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meta_information
dict
q39700
LigolwSegments.insert_from_segmentlistdict
train
def insert_from_segmentlistdict(self, seglists, name, version = None, comment = None, valid=None): """ Insert the segments from the segmentlistdict object seglists as a new list of "active" segments into this LigolwSegments object. The dictionary's keys are assumed to provide the instrument name for each seg...
python
{ "resource": "" }
q39701
LigolwSegments.get_by_name
train
def get_by_name(self, name, clip_to_valid = False): """ Retrieve the active segmentlists whose name equals name. The result is a segmentlistdict indexed by instrument. All segmentlist objects within it will be copies of the contents of this object, modifications will not affect the contents of this object....
python
{ "resource": "" }
q39702
LigolwSegments.finalize
train
def finalize(self, process_row = None): """ Restore the LigolwSegmentList objects to the XML tables in preparation for output. All segments from all segment lists are inserted into the tables in time order, but this is NOT behaviour external applications should rely on. This is done simply in the belief th...
python
{ "resource": "" }
q39703
GraphBuilder.add_graph
train
def add_graph(self, rhs_graph): """ Adds a graph to self.g :param rhs_graph: the graph to add :return: itself """ rhs_graph = self.__substitute_names_in_graph(rhs_graph) self.g = self.__merge_graphs(self.g, rhs_graph) return self
python
{ "resource": "" }
q39704
GraphBuilder.set
train
def set(self, code): """ Executes the code and apply it to the self.g :param code: the LISP code to execute :return: True/False, depending on the result of the LISP code """ if self.update: self.vertices_substitution_dict, self.edges_substitution_dict, self.m...
python
{ "resource": "" }
q39705
get_lock
train
def get_lock(lockfile): """ Tries to write a lockfile containing the current pid. Excepts if the lockfile already contains the pid of a running process. Although this should prevent a lock from being granted twice, it can theoretically deny a lock unjustly in the unlikely event that the origin...
python
{ "resource": "" }
q39706
confirm_lock
train
def confirm_lock(lockfile): """ Confirm that the given lockfile contains our pid. Should be entirely unecessary, but paranoia always served me well. """ pidfile = open(lockfile, "r") pidfile_pid = pidfile.readline().strip() pidfile.close() if int(pidfile_pid) != os.getpid(): rais...
python
{ "resource": "" }
q39707
_totuple
train
def _totuple( x ): """Utility stuff to convert string, int, long, float, None or anything to a usable tuple.""" if isinstance( x, basestring ): out = x, elif isinstance( x, ( int, long, float ) ): out = str( x ), elif x is None: out = None, else: out = tuple( x ) ...
python
{ "resource": "" }
q39708
escape
train
def escape( text, newline=False ): """Escape special html characters.""" if isinstance( text, basestring ): if '&' in text: text = text.replace( '&', '&amp;' ) if '>' in text: text = text.replace( '>', '&gt;' ) if '<' in text: text = text.replace( '<'...
python
{ "resource": "" }
q39709
element.render
train
def render( self, tag, single, between, kwargs ): """Append the actual tags to content.""" out = "<%s" % tag for key, value in list( kwargs.items( ) ): if value is not None: # when value is None that means stuff like <... checked> key = key.strip('_') ...
python
{ "resource": "" }
q39710
element.close
train
def close( self ): """Append a closing tag unless element has only opening tag.""" if self.tag in self.parent.twotags: self.parent.content.append( "</%s>" % self.tag ) elif self.tag in self.parent.onetags: raise ClosingError( self.tag ) elif self.parent.mode == '...
python
{ "resource": "" }
q39711
element.open
train
def open( self, **kwargs ): """Append an opening tag.""" if self.tag in self.parent.twotags or self.tag in self.parent.onetags: self.render( self.tag, False, None, kwargs ) elif self.mode == 'strict_html' and self.tag in self.parent.deptags: raise DeprecationError( self....
python
{ "resource": "" }
q39712
MultiIter
train
def MultiIter(*sequences): """ A generator for iterating over the elements of multiple sequences simultaneously. With N sequences given as input, the generator yields all possible distinct N-tuples that contain one element from each of the input sequences. Example: >>> x = MultiIter([0, 1, 2], [10, 11]) >>> ...
python
{ "resource": "" }
q39713
choices
train
def choices(vals, n): """ A generator for iterating over all choices of n elements from the input sequence vals. In each result returned, the original order of the values is preserved. Example: >>> x = choices(["a", "b", "c"], 2) >>> list(x) [('a', 'b'), ('a', 'c'), ('b', 'c')] The order of combinations in...
python
{ "resource": "" }
q39714
nonuniq
train
def nonuniq(iterable): """ Yield the non-unique items of an iterable, preserving order. If an item occurs N > 0 times in the input sequence, it will occur N-1 times in the output sequence. Example: >>> x = nonuniq([0, 0, 2, 6, 2, 0, 5]) >>> list(x) [0, 2, 0] """ temp_dict = {} for e in iterable: if e in...
python
{ "resource": "" }
q39715
inorder
train
def inorder(*iterables, **kwargs): """ A generator that yields the values from several ordered iterables in order. Example: >>> x = [0, 1, 2, 3] >>> y = [1.5, 2.5, 3.5, 4.5] >>> z = [1.75, 2.25, 3.75, 4.25] >>> list(inorder(x, y, z)) [0, 1, 1.5, 1.75, 2, 2.25, 2.5, 3, 3.5, 3.75, 4.25, 4.5] >>> list(inorder(...
python
{ "resource": "" }
q39716
randindex
train
def randindex(lo, hi, n = 1.): """ Yields integers in the range [lo, hi) where 0 <= lo < hi. Each return value is a two-element tuple. The first element is the random integer, the second is the natural logarithm of the probability with which that integer will be chosen. The CDF for the distribution from which ...
python
{ "resource": "" }
q39717
segment.shift
train
def shift(self, x): """ Return a new segment whose bounds are given by adding x to the segment's upper and lower bounds. """ return tuple.__new__(self.__class__, (self[0] + x, self[1] + x))
python
{ "resource": "" }
q39718
segmentlist.extent
train
def extent(self): """ Return the segment whose end-points denote the maximum and minimum extent of the segmentlist. Does not require the segmentlist to be coalesced. """ if not len(self): raise ValueError("empty list") min, max = self[0] for lo, hi in self: if min > lo: min = lo if max < h...
python
{ "resource": "" }
q39719
segmentlist.find
train
def find(self, item): """ Return the smallest i such that i is the index of an element that wholly contains item. Raises ValueError if no such element exists. Does not require the segmentlist to be coalesced. """ for i, seg in enumerate(self): if item in seg: return i raise ValueError(item)
python
{ "resource": "" }
q39720
segmentlistdict.map
train
def map(self, func): """ Return a dictionary of the results of func applied to each of the segmentlist objects in self. Example: >>> x = segmentlistdict() >>> x["H1"] = segmentlist([segment(0, 10)]) >>> x["H2"] = segmentlist([segment(5, 15)]) >>> x.map(lambda l: 12 in l) {'H2': True, 'H1': False} ...
python
{ "resource": "" }
q39721
segmentlistdict.keys_at
train
def keys_at(self, x): """ Return a list of the keys for the segment lists that contain x. Example: >>> x = segmentlistdict() >>> x["H1"] = segmentlist([segment(0, 10)]) >>> x["H2"] = segmentlist([segment(5, 15)]) >>> x.keys_at(12) ['H2'] """ return [key for key, segs in self.items() if x in segs...
python
{ "resource": "" }
q39722
segmentlistdict.intersects_segment
train
def intersects_segment(self, seg): """ Returns True if any segmentlist in self intersects the segment, otherwise returns False. """ return any(value.intersects_segment(seg) for value in self.itervalues())
python
{ "resource": "" }
q39723
segmentlistdict.intersects
train
def intersects(self, other): """ Returns True if there exists a segmentlist in self that intersects the corresponding segmentlist in other; returns False otherwise. See also: .intersects_all(), .all_intersects(), .all_intersects_all() """ return any(key in self and self[key].intersects(value) for key...
python
{ "resource": "" }
q39724
segmentlistdict.intersects_all
train
def intersects_all(self, other): """ Returns True if each segmentlist in other intersects the corresponding segmentlist in self; returns False if this is not the case, or if other is empty. See also: .intersects(), .all_intersects(), .all_intersects_all() """ return all(key in self and self[key].inte...
python
{ "resource": "" }
q39725
segmentlistdict.all_intersects_all
train
def all_intersects_all(self, other): """ Returns True if self and other have the same keys, and each segmentlist intersects the corresponding segmentlist in the other; returns False if this is not the case or if either dictionary is empty. See also: .intersects(), .all_intersects(), .intersects_all() ...
python
{ "resource": "" }
q39726
segmentlistdict.extend
train
def extend(self, other): """ Appends the segmentlists from other to the corresponding segmentlists in self, adding new segmentslists to self as needed. """ for key, value in other.iteritems(): if key not in self: self[key] = _shallowcopy(value) else: self[key].extend(value)
python
{ "resource": "" }
q39727
segmentlistdict.extract_common
train
def extract_common(self, keys): """ Return a new segmentlistdict containing only those segmentlists associated with the keys in keys, with each set to their mutual intersection. The offsets are preserved. """ keys = set(keys) new = self.__class__() intersection = self.intersection(keys) for key in ...
python
{ "resource": "" }
q39728
segmentlistdict.intersection
train
def intersection(self, keys): """ Return the intersection of the segmentlists associated with the keys in keys. """ keys = set(keys) if not keys: return segmentlist() seglist = _shallowcopy(self[keys.pop()]) for key in keys: seglist &= self[key] return seglist
python
{ "resource": "" }
q39729
extract
train
def extract(connection, filename, table_names = None, verbose = False, xsl_file = None): """ Convert the database at the given connection to a tabular LIGO Light-Weight XML document. The XML document is written to the file named filename. If table_names is not None, it should be a sequence of strings and only th...
python
{ "resource": "" }
q39730
append_search_summary
train
def append_search_summary(xmldoc, process, shared_object = "standalone", lalwrapper_cvs_tag = "", lal_cvs_tag = "", comment = None, ifos = None, inseg = None, outseg = None, nevents = 0, nnodes = 1): """ Append search summary information associated with the given process to the search summary table in xmldoc. Retur...
python
{ "resource": "" }
q39731
common_options
train
def common_options(func): """Commonly used command options.""" def parse_preset(ctx, param, value): return PRESETS.get(value, (None, None)) def parse_private(ctx, param, value): return hex_from_b64(value) if value else None func = click.option('--private', default=None, help='Private....
python
{ "resource": "" }
q39732
get_session_data
train
def get_session_data( username, password_verifier, salt, client_public, private, preset): """Print out server session data.""" session = SRPServerSession( SRPContext(username, prime=preset[0], generator=preset[1]), hex_from_b64(password_verifier), private=private) session.process(client_pub...
python
{ "resource": "" }
q39733
get_session_data
train
def get_session_data(ctx, username, password, salt, server_public, private, preset): """Print out client session data.""" session = SRPClientSession( SRPContext(username, password, prime=preset[0], generator=preset[1]), private=private) session.process(server_public, salt, base64=True) ...
python
{ "resource": "" }
q39734
cwd_decorator
train
def cwd_decorator(func): """ decorator to change cwd to directory containing rst for this function """ def wrapper(*args, **kw): cur_dir = os.getcwd() found = False for arg in sys.argv: if arg.endswith(".rst"): found = arg break ...
python
{ "resource": "" }
q39735
to_xml
train
def to_xml(node, pretty=False): """ convert an etree node to xml """ fout = Sio() etree = et.ElementTree(node) etree.write(fout) xml = fout.getvalue() if pretty: xml = pretty_xml(xml, True) return xml
python
{ "resource": "" }
q39736
pretty_xml
train
def pretty_xml(string_input, add_ns=False): """ pretty indent string_input """ if add_ns: elem = "<foo " for key, value in DOC_CONTENT_ATTRIB.items(): elem += ' %s="%s"' % (key, value) string_input = elem + ">" + string_input + "</foo>" doc = minidom.parseString(string_in...
python
{ "resource": "" }
q39737
add_cell
train
def add_cell(preso, pos, width, height, padding=1, top_margin=4, left_margin=2): """ Add a text frame to current slide """ available_width = SLIDE_WIDTH available_width -= left_margin * 2 available_width -= padding * (width - 1) column_width = available_width / width avail_height = SLIDE_HEIGHT ...
python
{ "resource": "" }
q39738
Preso.add_otp_style
train
def add_otp_style(self, zip_odp, style_file): """ takes the slide content and merges in the style_file """ style = zipwrap.Zippier(style_file) for picture_file in style.ls("Pictures"): zip_odp.write(picture_file, style.cat(picture_file, True)) xml_data = style...
python
{ "resource": "" }
q39739
Picture.update_frame_attributes
train
def update_frame_attributes(self, attrib): """ For positioning update the frame """ if "align" in self.user_defined: align = self.user_defined["align"] if "top" in align: attrib["style:vertical-pos"] = "top" if "right" in align: attrib...
python
{ "resource": "" }
q39740
Slide.update_style
train
def update_style(self, mapping): """Use to update fill-color""" default = { "presentation:background-visible": "true", "presentation:background-objects-visible": "true", "draw:fill": "solid", "draw:fill-color": "#772953", "draw:fill-image-width...
python
{ "resource": "" }
q39741
Slide._copy
train
def _copy(self): """ needs to update page numbers """ ins = copy.copy(self) ins._fire_page_number(self.page_number + 1) return ins
python
{ "resource": "" }
q39742
Slide.get_node
train
def get_node(self): """return etree Element representing this slide""" # already added title, text frames # add animation chunks if self.animations: anim_par = el("anim:par", attrib={"presentation:node-type": "timing-root"}) self._page.append(anim_par) ...
python
{ "resource": "" }
q39743
Slide.add_list
train
def add_list(self, bl): """ note that this pushes the cur_element, but doesn't pop it. You'll need to do that """ # text:list doesn't like being a child of text:p if self.cur_element is None: self.add_text_frame() self.push_element() self.cur_e...
python
{ "resource": "" }
q39744
Slide.add_table
train
def add_table(self, t): """ remember to call pop_element after done with table """ self.push_element() self._page.append(t.node) self.cur_element = t
python
{ "resource": "" }
q39745
XMLSlide.update_text
train
def update_text(self, mapping): """Iterate over nodes, replace text with mapping""" found = False for node in self._page.iter("*"): if node.text or node.tail: for old, new in mapping.items(): if node.text and old in node.text: ...
python
{ "resource": "" }
q39746
MixedContent.parent_of
train
def parent_of(self, name): """ go to parent of node with name, and set as cur_node. Useful for creating new paragraphs """ if not self._in_tag(name): return node = self.cur_node while node.tag != name: node = node.getparent() self....
python
{ "resource": "" }
q39747
MixedContent._is_last_child
train
def _is_last_child(self, tagname, attributes=None): """ Check if last child of cur_node is tagname with attributes """ children = self.cur_node.getchildren() if children: result = self._is_node(tagname, attributes, node=children[-1]) return result ...
python
{ "resource": "" }
q39748
MixedContent._in_tag
train
def _in_tag(self, tagname, attributes=None): """ Determine if we are already in a certain tag. If we give attributes, make sure they match. """ node = self.cur_node while not node is None: if node.tag == tagname: if attributes and node.attrib =...
python
{ "resource": "" }
q39749
MixedContent._check_add_node
train
def _check_add_node(self, parent, name): """ Returns False if bad to make name a child of parent """ if name == ns("text", "a"): if parent.tag == ns("draw", "text-box"): return False return True
python
{ "resource": "" }
q39750
MixedContent._add_styles
train
def _add_styles(self, add_paragraph=True, add_text=True): """ Adds paragraph and span wrappers if necessary based on style """ p_styles = self.get_para_styles() t_styles = self.get_span_styles() for s in self.slide.pending_styles: if isinstance(s, ParagraphSty...
python
{ "resource": "" }
q39751
MixedContent.line_break
train
def line_break(self): """insert as many line breaks as the insert_line_break variable says """ for i in range(self.slide.insert_line_break): # needs to be inside text:p if not self._in_tag(ns("text", "p")): # we can just add a text:p and no line-break ...
python
{ "resource": "" }
q39752
Table.__tableStringParser
train
def __tableStringParser(self, tableString): """ Will parse and check tableString parameter for any invalid strings. Args: tableString (str): Standard table string with header and decisions. Raises: ValueError: tableString is empty. ValueError: One of the header element is not unique. ValueError: M...
python
{ "resource": "" }
q39753
Table.__replaceSpecialValues
train
def __replaceSpecialValues(self, decisions): """ Will replace special values in decisions array. Args: decisions (array of array of str): Standard decision array format. Raises: ValueError: Row element don't have parent value. Returns: New decision array with updated values. """ error = [] fo...
python
{ "resource": "" }
q39754
Table.__toString
train
def __toString(self, values): """ Will replace dict values with string values Args: values (dict): Dictionary of values Returns: Updated values dict """ for key in values: if not values[key] is str: values[key] = str(values[key]) return values
python
{ "resource": "" }
q39755
Table.__valueKeyWithHeaderIndex
train
def __valueKeyWithHeaderIndex(self, values): """ This is hellper function, so that we can mach decision values with row index as represented in header index. Args: values (dict): Normaly this will have dict of header values and values from decision Return: >>> return() { values[headerName] : in...
python
{ "resource": "" }
q39756
Table.__checkDecisionParameters
train
def __checkDecisionParameters(self, result, **values): """ Checker of decision parameters, it will raise ValueError if finds something wrong. Args: result (array of str): See public decision methods **values (array of str): See public decision methods Raise: ValueError: Result array none. ValueErr...
python
{ "resource": "" }
q39757
Table.__getDecision
train
def __getDecision(self, result, multiple=False, **values): """ The main method for decision picking. Args: result (array of str): What values you want to get in return array. multiple (bolean, optional): Do you want multiple result if it finds many maching decisions. **values (dict): What should finder ...
python
{ "resource": "" }
q39758
Table.decision
train
def decision(self, result, **values): """ The decision method with callback option. This method will find matching row, construct a dictionary and call callback with dictionary. Args: callback (function): Callback function will be called when decision will be finded. result (array of str): Array of heade...
python
{ "resource": "" }
q39759
Table.allDecisions
train
def allDecisions(self, result, **values): """ Joust like self.decision but for multiple finded values. Returns: Arrays of arrays of finded elements or if finds only one mach, array of strings. """ data = self.__getDecision(result, multiple=True, **values) data = [data[value] for value in result] if le...
python
{ "resource": "" }
q39760
ThriftConnection._dict_to_map_str_str
train
def _dict_to_map_str_str(self, d): """ Thrift requires the params and headers dict values to only contain str values. """ return dict(map( lambda (k, v): (k, str(v).lower() if isinstance(v, bool) else str(v)), d.iteritems() ))
python
{ "resource": "" }
q39761
suppress_stdout
train
def suppress_stdout(): """ Context manager that suppresses stdout. Examples: >>> with suppress_stdout(): ... print('Test print') >>> print('test') test """ save_stdout = sys.stdout sys.stdout = DevNull() yield sys.stdout = save_stdout
python
{ "resource": "" }
q39762
clean_title
train
def clean_title(title): """ Clean title -> remove dates, remove duplicated spaces and strip title. Args: title (str): Title. Returns: str: Clean title without dates, duplicated, trailing and leading spaces. """ date_pattern = re.compile(r'\W*' r'\...
python
{ "resource": "" }
q39763
get_ext
train
def get_ext(url): """ Extract an extension from the url. Args: url (str): String representation of a url. Returns: str: Filename extension from a url (without a dot), '' if extension is not present. """ parsed = urllib.parse.urlparse(url) root, ext = os.path.splitext(pars...
python
{ "resource": "" }
q39764
delete_duplicates
train
def delete_duplicates(seq): """ Remove duplicates from an iterable, preserving the order. Args: seq: Iterable of various type. Returns: list: List of unique objects. """ seen = set() seen_add = seen.add return [x for x in seq if not (x in seen or seen_add(x))]
python
{ "resource": "" }
q39765
RethinkCollection.joinOn
train
def joinOn(self, model, onIndex): """ Performs an eqJoin on with the given model. The resulting join will be accessible through the models name. """ return self._joinOnAsPriv(model, onIndex, model.__name__)
python
{ "resource": "" }
q39766
RethinkCollection.joinOnAs
train
def joinOnAs(self, model, onIndex, whatAs): """ Like `joinOn` but allows setting the joined results name to access it from. Performs an eqJoin on with the given model. The resulting join will be accessible through the given name. """ return self._joinOnAsPriv(mod...
python
{ "resource": "" }
q39767
RethinkCollection._joinOnAsPriv
train
def _joinOnAsPriv(self, model, onIndex, whatAs): """ Private method for handling joins. """ if self._join: raise Exception("Already joined with a table!") self._join = model self._joinedField = whatAs table = model.table self._query = self._qu...
python
{ "resource": "" }
q39768
RethinkCollection.orderBy
train
def orderBy(self, field, direct="desc"): """ Allows for the results to be ordered by a specific field. If given, direction can be set with passing an additional argument in the form of "asc" or "desc" """ if direct == "desc": self._query = self._query.order_by...
python
{ "resource": "" }
q39769
RethinkCollection.offset
train
def offset(self, value): """ Allows for skipping a specified number of results in query. Useful for pagination. """ self._query = self._query.skip(value) return self
python
{ "resource": "" }
q39770
RethinkCollection.limit
train
def limit(self, value): """ Allows for limiting number of results returned for query. Useful for pagination. """ self._query = self._query.limit(value) return self
python
{ "resource": "" }
q39771
RethinkCollection.fetch
train
def fetch(self): """ Fetches the query and then tries to wrap the data in the model, joining as needed, if applicable. """ returnResults = [] results = self._query.run() for result in results: if self._join: # Because we can tell the m...
python
{ "resource": "" }
q39772
coerce_put_post
train
def coerce_put_post(request): """ Django doesn't particularly understand REST. In case we send data over PUT, Django won't actually look at the data and load it. We need to twist its arm here. The try/except abominiation here is due to a bug in mod_python. This should fix it. """ if...
python
{ "resource": "" }
q39773
Mimer.loader_for_type
train
def loader_for_type(self, ctype): """ Gets a function ref to deserialize content for a certain mimetype. """ for loadee, mimes in Mimer.TYPES.iteritems(): for mime in mimes: if ctype.startswith(mime): return loadee
python
{ "resource": "" }
q39774
getsteps
train
def getsteps(levels, tagmax): """ Returns a list with the max number of posts per "tagcloud level" """ ntw = levels if ntw < 2: ntw = 2 steps = [(stp, 1 + (stp * int(math.ceil(tagmax * 1.0 / ntw - 1)))) for stp in range(ntw)] # just to be sure~ steps[-1] = (steps[-1][0], tagmax+1) return steps
python
{ "resource": "" }
q39775
build
train
def build(site, tagdata): """ Returns the tag cloud for a list of tags. """ tagdata.sort() # we get the most popular tag to calculate the tags' weigth tagmax = 0 for tagname, tagcount in tagdata: if tagcount > tagmax: tagmax = tagcount steps = getsteps(site.tagcloud_levels, tagmax) tags = [] for tagnam...
python
{ "resource": "" }
q39776
getquery
train
def getquery(query): 'Performs a query and get the results.' try: conn = connection.cursor() conn.execute(query) data = conn.fetchall() conn.close() except: data = list() return data
python
{ "resource": "" }
q39777
getcloud
train
def getcloud(site, feed_id=None): """ Returns the tag cloud for a site or a site's subscriber. """ cloudict = fjcache.cache_get(site.id, 'tagclouds') if not cloudict: cloudict = cloudata(site) fjcache.cache_set(site, 'tagclouds', cloudict) # A subscriber's tag cloud has been requested. if feed_id: feed_id...
python
{ "resource": "" }
q39778
extract_stations
train
def extract_stations(page): '''Extract bus stations from routine page. :param page: crawled page. ''' stations = [_(station.value) for station in page('.stateName')] return { 'terminal': { stations[0]: list(reversed(stations)), stations[-1]: stations }, ...
python
{ "resource": "" }
q39779
extract_current_routine
train
def extract_current_routine(page, stations): '''Extract current routine information from page. :param page: crawled page. :param stations: bus stations list. See `~extract_stations`. ''' current_routines = CURRENT_ROUTINE_PATTERN.findall(page.text()) if not current_routines: return ...
python
{ "resource": "" }
q39780
extract_bus_routine
train
def extract_bus_routine(page): '''Extract bus routine information from page. :param page: crawled page. ''' if not isinstance(page, pq): page = pq(page) stations = extract_stations(page) return { # Routine name. 'name': extract_routine_name(page), # Bus station...
python
{ "resource": "" }
q39781
RethinkModel._grabData
train
def _grabData(self, key): """ Tries to find the existing document in the database, if it is found, then the objects _data is set to that document, and this returns `True`, otherwise this will return `False` :param key: The primary key of the object we're looking for :typ...
python
{ "resource": "" }
q39782
RethinkModel.save
train
def save(self): """ If an id exists in the database, we assume we'll update it, and if not then we'll insert it. This could be a problem with creating your own id's on new objects, however luckily, we keep track of if this is a new object through a private _new variable, and use ...
python
{ "resource": "" }
q39783
RethinkModel.delete
train
def delete(self): """ Deletes the current instance. This assumes that we know what we're doing, and have a primary key in our data already. If this is a new instance, then we'll let the user know with an Exception """ if self._new: raise Exception("This is a n...
python
{ "resource": "" }
q39784
BGTree.add_edge
train
def add_edge(self, node1_name, node2_name, edge_length=DEFAULT_EDGE_LENGTH): """ Adds a new edge to the current tree with specified characteristics Forbids addition of an edge, if a parent node is not present Forbids addition of an edge, if a child node already exists :param node1_name...
python
{ "resource": "" }
q39785
BGTree.__get_node_by_name
train
def __get_node_by_name(self, name): """ Returns a first TreeNode object, which name matches the specified argument :raises: ValueError (if no node with specified name is present in the tree) """ try: for entry in filter(lambda x: x.name == name, self.nodes()): ...
python
{ "resource": "" }
q39786
BGTree.__has_edge
train
def __has_edge(self, node1_name, node2_name, account_for_direction=True): """ Returns a boolean flag, telling if a tree has an edge with two nodes, specified by their names as arguments If a account_for_direction is specified as True, the order of specified node names has to relate to parent - child re...
python
{ "resource": "" }
q39787
BGTree.__get_v_tree_consistent_leaf_based_hashable_multicolors
train
def __get_v_tree_consistent_leaf_based_hashable_multicolors(self): """ Internally used method, that recalculates VTree-consistent sets of leaves in the current tree """ result = [] nodes = deque([self.__root]) while len(nodes) > 0: current_node = nodes.popleft() c...
python
{ "resource": "" }
q39788
reload
train
def reload(*command, ignore_patterns=[]): """Reload given command""" path = "." sig = signal.SIGTERM delay = 0.25 ignorefile = ".reloadignore" ignore_patterns = ignore_patterns or load_ignore_patterns(ignorefile) event_handler = ReloadEventHandler(ignore_patterns) reloader = Reloader(c...
python
{ "resource": "" }
q39789
reload_me
train
def reload_me(*args, ignore_patterns=[]): """Reload currently running command with given args""" command = [sys.executable, sys.argv[0]] command.extend(args) reload(*command, ignore_patterns=ignore_patterns)
python
{ "resource": "" }
q39790
GRIMMReader.parse_data_string
train
def parse_data_string(data_string): """ Parses a string assumed to contain gene order data, retrieving information about fragment type, gene order, blocks names and their orientation First checks if gene order termination signs are present. Selects the earliest one. Checks that informat...
python
{ "resource": "" }
q39791
GRIMMReader.__assign_vertex_pair
train
def __assign_vertex_pair(block): """ Assigns usual BreakpointGraph type vertices to supplied block. Vertices are labeled as "block_name" + "h" and "block_name" + "t" according to blocks orientation. :param block: information about a genomic block to create a pair of vertices for in a format of...
python
{ "resource": "" }
q39792
GRIMMReader.get_breakpoint_graph
train
def get_breakpoint_graph(stream, merge_edges=True): """ Taking a file-like object transforms supplied gene order data into the language of :param merge_edges: a flag that indicates if parallel edges in produced breakpoint graph shall be merged or not :type merge_edges: ``bool`` :param s...
python
{ "resource": "" }
q39793
BGGenome.from_json
train
def from_json(cls, data, json_schema_class=None): """ JSON deserialization method that retrieves a genome instance from its json representation If specific json schema is provided, it is utilized, and if not, a class specific is used """ schema = cls.json_schema if json_schema_class is ...
python
{ "resource": "" }
q39794
send_file
train
def send_file(request, filename, content_type='image/jpeg'): """ Send a file through Django without loading the whole file into memory at once. The FileWrapper will turn the file object into an iterator for...
python
{ "resource": "" }
q39795
send_zipfile
train
def send_zipfile(request, fileList): """ Create a ZIP file on disk and transmit it in chunks of 8KB, without loading the whole file into memory. A similar approach can be used for large dynamic PDF files....
python
{ "resource": "" }
q39796
enable
train
def enable(): """ Enable all benchmarking. """ Benchmark.enable = True ComparisonBenchmark.enable = True BenchmarkedFunction.enable = True BenchmarkedClass.enable = True
python
{ "resource": "" }
q39797
disable
train
def disable(): """ Disable all benchmarking. """ Benchmark.enable = False ComparisonBenchmark.enable = False BenchmarkedFunction.enable = False BenchmarkedClass.enable = False
python
{ "resource": "" }
q39798
TaggedVertex.add_tag
train
def add_tag(self, tag, value): """ as tags are kept in a sorted order, a bisection is a fastest way to identify a correct position of or a new tag to be added. An additional check is required to make sure w don't add duplicates """ index = bisect_left(self.tags, (tag, value)) con...
python
{ "resource": "" }
q39799
BGEdge.colors_json_ids
train
def colors_json_ids(self): """ A proxy property based access to vertices in current edge When edge is serialized to JSON object, no explicit object for its multicolor is created, but rather all colors, taking into account their multiplicity, are referenced by their json_ids. """ ...
python
{ "resource": "" }