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| | """ |
| | A collection of dictionary-based wrappers for moving between MetaTensor types and dictionaries of data. |
| | These can be used to make backwards compatible code. |
| | |
| | Class names are ended with 'd' to denote dictionary-based transforms. |
| | """ |
| |
|
| | from __future__ import annotations |
| |
|
| | from collections.abc import Hashable, Mapping, Sequence |
| |
|
| | import numpy as np |
| | import torch |
| |
|
| | from monai.config.type_definitions import KeysCollection, NdarrayOrTensor |
| | from monai.data.meta_tensor import MetaTensor |
| | from monai.transforms.inverse import InvertibleTransform |
| | from monai.transforms.transform import MapTransform |
| | from monai.utils.enums import PostFix, TransformBackends |
| | from monai.utils.misc import ensure_tuple_rep |
| |
|
| | __all__ = [ |
| | "FromMetaTensord", |
| | "FromMetaTensorD", |
| | "FromMetaTensorDict", |
| | "ToMetaTensord", |
| | "ToMetaTensorD", |
| | "ToMetaTensorDict", |
| | ] |
| |
|
| |
|
| | class FromMetaTensord(MapTransform, InvertibleTransform): |
| | """ |
| | Dictionary-based transform to convert MetaTensor to a dictionary. |
| | |
| | If input is `{"a": MetaTensor, "b": MetaTensor}`, then output will |
| | have the form `{"a": torch.Tensor, "a_meta_dict": dict, "a_transforms": list, "b": ...}`. |
| | """ |
| |
|
| | backend = [TransformBackends.TORCH, TransformBackends.NUMPY, TransformBackends.CUPY] |
| |
|
| | def __init__( |
| | self, keys: KeysCollection, data_type: Sequence[str] | str = "tensor", allow_missing_keys: bool = False |
| | ): |
| | """ |
| | Args: |
| | keys: keys of the corresponding items to be transformed. |
| | See also: :py:class:`monai.transforms.compose.MapTransform` |
| | data_type: target data type to convert, should be "tensor" or "numpy". |
| | allow_missing_keys: don't raise exception if key is missing. |
| | """ |
| | super().__init__(keys, allow_missing_keys) |
| | self.as_tensor_output = tuple(d == "tensor" for d in ensure_tuple_rep(data_type, len(self.keys))) |
| |
|
| | def __call__(self, data: Mapping[Hashable, NdarrayOrTensor]) -> dict[Hashable, NdarrayOrTensor]: |
| | d = dict(data) |
| | for key, t in self.key_iterator(d, self.as_tensor_output): |
| | im: MetaTensor = d[key] |
| | d.update(im.as_dict(key, output_type=torch.Tensor if t else np.ndarray)) |
| | self.push_transform(d, key) |
| | return d |
| |
|
| | def inverse(self, data: Mapping[Hashable, NdarrayOrTensor]) -> dict[Hashable, NdarrayOrTensor]: |
| | d = dict(data) |
| | for key in self.key_iterator(d): |
| | |
| | _ = self.get_most_recent_transform(d, key) |
| | |
| | im = d[key] |
| | meta = d.pop(PostFix.meta(key), None) |
| | transforms = d.pop(PostFix.transforms(key), None) |
| | im = MetaTensor(im, meta=meta, applied_operations=transforms) |
| | d[key] = im |
| | |
| | self.pop_transform(d, key) |
| | return d |
| |
|
| |
|
| | class ToMetaTensord(MapTransform, InvertibleTransform): |
| | """ |
| | Dictionary-based transform to convert a dictionary to MetaTensor. |
| | |
| | If input is `{"a": torch.Tensor, "a_meta_dict": dict, "b": ...}`, then output will |
| | have the form `{"a": MetaTensor, "b": MetaTensor}`. |
| | """ |
| |
|
| | backend = [TransformBackends.TORCH, TransformBackends.NUMPY, TransformBackends.CUPY] |
| |
|
| | def __call__(self, data: Mapping[Hashable, NdarrayOrTensor]) -> dict[Hashable, NdarrayOrTensor]: |
| | d = dict(data) |
| | for key in self.key_iterator(d): |
| | self.push_transform(d, key) |
| | im = d[key] |
| | meta = d.pop(PostFix.meta(key), None) |
| | transforms = d.pop(PostFix.transforms(key), None) |
| | im = MetaTensor(im, meta=meta, applied_operations=transforms) |
| | d[key] = im |
| | return d |
| |
|
| | def inverse(self, data: Mapping[Hashable, NdarrayOrTensor]) -> dict[Hashable, NdarrayOrTensor]: |
| | d = dict(data) |
| | for key in self.key_iterator(d): |
| | |
| | _ = self.get_most_recent_transform(d, key) |
| | |
| | im: MetaTensor = d[key] |
| | d.update(im.as_dict(key)) |
| | |
| | self.pop_transform(d, key) |
| | return d |
| |
|
| |
|
| | FromMetaTensorD = FromMetaTensorDict = FromMetaTensord |
| | ToMetaTensorD = ToMetaTensorDict = ToMetaTensord |
| |
|