| | |
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| | |
| | |
| | """ |
| | How to use the adaptor function |
| | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| | |
| | The key to using 'adaptor' lies in understanding the function that want to |
| | adapt. The 'inputs' and 'outputs' parameters take either strings, lists/tuples |
| | of strings or a dictionary mapping strings, depending on call signature of the |
| | function being called. |
| | |
| | The adaptor function is written to minimise the cognitive load on the caller. |
| | There should be a minimal number of cases where the caller has to set anything |
| | on the input parameter, and for functions that return a single value, it is |
| | only necessary to name the dictionary keyword to which that value is assigned. |
| | |
| | Use of `outputs` |
| | ---------------- |
| | |
| | `outputs` can take either a string, a list/tuple of string or a dict of string |
| | to string, depending on what the transform being adapted returns: |
| | |
| | - If the transform returns a single argument, then outputs can be supplied a |
| | string that indicates what key to assign the return value to in the |
| | dictionary |
| | - If the transform returns a list/tuple of values, then outputs can be supplied |
| | a list/tuple of the same length. The strings in outputs map the return value |
| | at the corresponding position to a key in the dictionary |
| | - If the transform returns a dictionary of values, then outputs must be supplied |
| | a dictionary that maps keys in the function's return dictionary to the |
| | dictionary being passed between functions |
| | |
| | Note, the caller is free to use a more complex way of specifying the outputs |
| | parameter than is required. The following are synonymous and will be treated |
| | identically: |
| | |
| | .. code-block:: python |
| | |
| | # single argument |
| | adaptor(MyTransform(), 'image') |
| | adaptor(MyTransform(), ['image']) |
| | adaptor(MyTransform(), {'image': 'image'}) |
| | |
| | # multiple arguments |
| | adaptor(MyTransform(), ['image', 'label']) |
| | adaptor(MyTransform(), {'image': 'image', 'label': 'label'}) |
| | |
| | Use of `inputs` |
| | --------------- |
| | |
| | `inputs` can usually be omitted when using `adaptor`. It is only required when a |
| | the function's parameter names do not match the names in the dictionary that is |
| | used to chain transform calls. |
| | |
| | .. code-block:: python |
| | |
| | class MyTransform1: |
| | def __call__(self, image): |
| | # do stuff to image |
| | return image + 1 |
| | |
| | |
| | class MyTransform2: |
| | def __call__(self, img_dict): |
| | # do stuff to image |
| | img_dict["image"] += 1 |
| | return img_dict |
| | |
| | |
| | xform = Compose([adaptor(MyTransform1(), "image"), MyTransform2()]) |
| | d = {"image": 1} |
| | print(xform(d)) |
| | |
| | >>> {'image': 3} |
| | |
| | .. code-block:: python |
| | |
| | class MyTransform3: |
| | def __call__(self, img_dict): |
| | # do stuff to image |
| | img_dict["image"] -= 1 |
| | img_dict["segment"] = img_dict["image"] |
| | return img_dict |
| | |
| | |
| | class MyTransform4: |
| | def __call__(self, img, seg): |
| | # do stuff to image |
| | img -= 1 |
| | seg -= 1 |
| | return img, seg |
| | |
| | |
| | xform = Compose([MyTransform3(), adaptor(MyTransform4(), ["img", "seg"], {"image": "img", "segment": "seg"})]) |
| | d = {"image": 1} |
| | print(xform(d)) |
| | |
| | >>> {'image': 0, 'segment': 0, 'img': -1, 'seg': -1} |
| | |
| | Inputs: |
| | |
| | - dictionary in: None | Name maps |
| | - params in (match): None | Name list | Name maps |
| | - params in (mismatch): Name maps |
| | - params & `**kwargs` (match) : None | Name maps |
| | - params & `**kwargs` (mismatch) : Name maps |
| | |
| | Outputs: |
| | |
| | - dictionary out: None | Name maps |
| | - list/tuple out: list/tuple |
| | - variable out: string |
| | |
| | """ |
| |
|
| | from __future__ import annotations |
| |
|
| | from typing import Callable |
| |
|
| | from monai.utils import export as _monai_export |
| |
|
| | __all__ = ["adaptor", "apply_alias", "to_kwargs", "FunctionSignature"] |
| |
|
| |
|
| | @_monai_export("monai.transforms") |
| | def adaptor(function, outputs, inputs=None): |
| |
|
| | def must_be_types_or_none(variable_name, variable, types): |
| | if variable is not None: |
| | if not isinstance(variable, types): |
| | raise TypeError(f"'{variable_name}' must be None or one of {types} but is {type(variable)}") |
| |
|
| | def must_be_types(variable_name, variable, types): |
| | if not isinstance(variable, types): |
| | raise TypeError(f"'{variable_name}' must be one of {types} but is {type(variable)}") |
| |
|
| | def map_names(ditems, input_map): |
| | return {input_map(k, k): v for k, v in ditems.items()} |
| |
|
| | def map_only_names(ditems, input_map): |
| | return {v: ditems[k] for k, v in input_map.items()} |
| |
|
| | def _inner(ditems): |
| | sig = FunctionSignature(function) |
| |
|
| | if sig.found_kwargs: |
| | must_be_types_or_none("inputs", inputs, (dict,)) |
| | |
| | if inputs is None: |
| | dinputs = dict(ditems) |
| | else: |
| | |
| | dinputs = map_names(ditems, inputs) |
| |
|
| | else: |
| | |
| | |
| | dinputs = {k: v for k, v in ditems.items() if k in sig.non_var_parameters} |
| | must_be_types_or_none("inputs", inputs, (str, list, tuple, dict)) |
| | if inputs is None: |
| | pass |
| | elif isinstance(inputs, str): |
| | if len(sig.non_var_parameters) != 1: |
| | raise ValueError("if 'inputs' is a string, function may only have a single non-variadic parameter") |
| | dinputs = {inputs: ditems[inputs]} |
| | elif isinstance(inputs, (list, tuple)): |
| | dinputs = {k: dinputs[k] for k in inputs} |
| | else: |
| | |
| | dinputs = map_only_names(ditems, inputs) |
| |
|
| | ret = function(**dinputs) |
| |
|
| | |
| | op = outputs |
| | if isinstance(ret, dict): |
| | must_be_types_or_none("outputs", op, (dict,)) |
| | if op is not None: |
| | ret = {v: ret[k] for k, v in op.items()} |
| | elif isinstance(ret, (list, tuple)): |
| | if len(ret) == 1: |
| | must_be_types("outputs", op, (str, list, tuple)) |
| | else: |
| | must_be_types("outputs", op, (list, tuple)) |
| |
|
| | if isinstance(op, str): |
| | op = [op] |
| |
|
| | if len(ret) != len(outputs): |
| | raise ValueError("'outputs' must have the same length as the number of elements that were returned") |
| |
|
| | ret = dict(zip(op, ret)) |
| | else: |
| | must_be_types("outputs", op, (str, list, tuple)) |
| | if isinstance(op, (list, tuple)): |
| | if len(op) != 1: |
| | raise ValueError("'outputs' must be of length one if it is a list or tuple") |
| | op = op[0] |
| | ret = {op: ret} |
| |
|
| | ditems = dict(ditems) |
| | for k, v in ret.items(): |
| | ditems[k] = v |
| |
|
| | return ditems |
| |
|
| | return _inner |
| |
|
| |
|
| | @_monai_export("monai.transforms") |
| | def apply_alias(fn, name_map): |
| |
|
| | def _inner(data): |
| | |
| | pre_call = dict(data) |
| | for _from, _to in name_map.items(): |
| | pre_call[_to] = pre_call.pop(_from) |
| |
|
| | |
| | post_call = fn(pre_call) |
| |
|
| | |
| | for _from, _to in name_map.items(): |
| | post_call[_from] = post_call.pop(_to) |
| |
|
| | return post_call |
| |
|
| | return _inner |
| |
|
| |
|
| | @_monai_export("monai.transforms") |
| | def to_kwargs(fn): |
| |
|
| | def _inner(data): |
| | return fn(**data) |
| |
|
| | return _inner |
| |
|
| |
|
| | class FunctionSignature: |
| |
|
| | def __init__(self, function: Callable) -> None: |
| | import inspect |
| |
|
| | sfn = inspect.signature(function) |
| | self.found_args = False |
| | self.found_kwargs = False |
| | self.defaults = {} |
| | self.non_var_parameters = set() |
| | for p in sfn.parameters.values(): |
| | if p.kind is inspect.Parameter.VAR_POSITIONAL: |
| | self.found_args = True |
| | if p.kind is inspect.Parameter.VAR_KEYWORD: |
| | self.found_kwargs = True |
| | else: |
| | self.non_var_parameters.add(p.name) |
| | self.defaults[p.name] = p.default is not p.empty |
| |
|
| | def __repr__(self) -> str: |
| | s = "<class 'FunctionSignature': found_args={}, found_kwargs={}, defaults={}" |
| | return s.format(self.found_args, self.found_kwargs, self.defaults) |
| |
|
| | def __str__(self) -> str: |
| | return self.__repr__() |
| |
|