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| | from __future__ import annotations |
| |
|
| | from .adaptors import FunctionSignature, adaptor, apply_alias, to_kwargs |
| | from .compose import Compose, OneOf, RandomOrder, SomeOf |
| | from .croppad.array import ( |
| | BorderPad, |
| | BoundingRect, |
| | CenterScaleCrop, |
| | CenterSpatialCrop, |
| | Crop, |
| | CropForeground, |
| | DivisiblePad, |
| | Pad, |
| | RandCropByLabelClasses, |
| | RandCropByPosNegLabel, |
| | RandScaleCrop, |
| | RandSpatialCrop, |
| | RandSpatialCropSamples, |
| | RandWeightedCrop, |
| | ResizeWithPadOrCrop, |
| | SpatialCrop, |
| | SpatialPad, |
| | ) |
| | from .croppad.batch import PadListDataCollate |
| | from .croppad.dictionary import ( |
| | BorderPadd, |
| | BorderPadD, |
| | BorderPadDict, |
| | BoundingRectd, |
| | BoundingRectD, |
| | BoundingRectDict, |
| | CenterScaleCropd, |
| | CenterScaleCropD, |
| | CenterScaleCropDict, |
| | CenterSpatialCropd, |
| | CenterSpatialCropD, |
| | CenterSpatialCropDict, |
| | Cropd, |
| | CropD, |
| | CropDict, |
| | CropForegroundd, |
| | CropForegroundD, |
| | CropForegroundDict, |
| | DivisiblePadd, |
| | DivisiblePadD, |
| | DivisiblePadDict, |
| | Padd, |
| | PadD, |
| | PadDict, |
| | RandCropByLabelClassesd, |
| | RandCropByLabelClassesD, |
| | RandCropByLabelClassesDict, |
| | RandCropByPosNegLabeld, |
| | RandCropByPosNegLabelD, |
| | RandCropByPosNegLabelDict, |
| | RandCropd, |
| | RandCropD, |
| | RandCropDict, |
| | RandScaleCropd, |
| | RandScaleCropD, |
| | RandScaleCropDict, |
| | RandSpatialCropd, |
| | RandSpatialCropD, |
| | RandSpatialCropDict, |
| | RandSpatialCropSamplesd, |
| | RandSpatialCropSamplesD, |
| | RandSpatialCropSamplesDict, |
| | RandWeightedCropd, |
| | RandWeightedCropD, |
| | RandWeightedCropDict, |
| | ResizeWithPadOrCropd, |
| | ResizeWithPadOrCropD, |
| | ResizeWithPadOrCropDict, |
| | SpatialCropd, |
| | SpatialCropD, |
| | SpatialCropDict, |
| | SpatialPadd, |
| | SpatialPadD, |
| | SpatialPadDict, |
| | ) |
| | from .croppad.functional import crop_func, crop_or_pad_nd, pad_func, pad_nd |
| | from .intensity.array import ( |
| | AdjustContrast, |
| | ClipIntensityPercentiles, |
| | ComputeHoVerMaps, |
| | DetectEnvelope, |
| | ForegroundMask, |
| | GaussianSharpen, |
| | GaussianSmooth, |
| | GibbsNoise, |
| | HistogramNormalize, |
| | IntensityRemap, |
| | KSpaceSpikeNoise, |
| | MaskIntensity, |
| | MedianSmooth, |
| | NormalizeIntensity, |
| | RandAdjustContrast, |
| | RandBiasField, |
| | RandCoarseDropout, |
| | RandCoarseShuffle, |
| | RandCoarseTransform, |
| | RandGaussianNoise, |
| | RandGaussianSharpen, |
| | RandGaussianSmooth, |
| | RandGibbsNoise, |
| | RandHistogramShift, |
| | RandIntensityRemap, |
| | RandKSpaceSpikeNoise, |
| | RandRicianNoise, |
| | RandScaleIntensity, |
| | RandScaleIntensityFixedMean, |
| | RandShiftIntensity, |
| | RandStdShiftIntensity, |
| | SavitzkyGolaySmooth, |
| | ScaleIntensity, |
| | ScaleIntensityFixedMean, |
| | ScaleIntensityRange, |
| | ScaleIntensityRangePercentiles, |
| | ShiftIntensity, |
| | StdShiftIntensity, |
| | ThresholdIntensity, |
| | UltrasoundConfidenceMapTransform, |
| | ) |
| | from .intensity.dictionary import ( |
| | AdjustContrastd, |
| | AdjustContrastD, |
| | AdjustContrastDict, |
| | ClipIntensityPercentilesd, |
| | ClipIntensityPercentilesD, |
| | ClipIntensityPercentilesDict, |
| | ComputeHoVerMapsd, |
| | ComputeHoVerMapsD, |
| | ComputeHoVerMapsDict, |
| | ForegroundMaskd, |
| | ForegroundMaskD, |
| | ForegroundMaskDict, |
| | GaussianSharpend, |
| | GaussianSharpenD, |
| | GaussianSharpenDict, |
| | GaussianSmoothd, |
| | GaussianSmoothD, |
| | GaussianSmoothDict, |
| | GibbsNoised, |
| | GibbsNoiseD, |
| | GibbsNoiseDict, |
| | HistogramNormalized, |
| | HistogramNormalizeD, |
| | HistogramNormalizeDict, |
| | KSpaceSpikeNoised, |
| | KSpaceSpikeNoiseD, |
| | KSpaceSpikeNoiseDict, |
| | MaskIntensityd, |
| | MaskIntensityD, |
| | MaskIntensityDict, |
| | MedianSmoothd, |
| | MedianSmoothD, |
| | MedianSmoothDict, |
| | NormalizeIntensityd, |
| | NormalizeIntensityD, |
| | NormalizeIntensityDict, |
| | RandAdjustContrastd, |
| | RandAdjustContrastD, |
| | RandAdjustContrastDict, |
| | RandBiasFieldd, |
| | RandBiasFieldD, |
| | RandBiasFieldDict, |
| | RandCoarseDropoutd, |
| | RandCoarseDropoutD, |
| | RandCoarseDropoutDict, |
| | RandCoarseShuffled, |
| | RandCoarseShuffleD, |
| | RandCoarseShuffleDict, |
| | RandGaussianNoised, |
| | RandGaussianNoiseD, |
| | RandGaussianNoiseDict, |
| | RandGaussianSharpend, |
| | RandGaussianSharpenD, |
| | RandGaussianSharpenDict, |
| | RandGaussianSmoothd, |
| | RandGaussianSmoothD, |
| | RandGaussianSmoothDict, |
| | RandGibbsNoised, |
| | RandGibbsNoiseD, |
| | RandGibbsNoiseDict, |
| | RandHistogramShiftd, |
| | RandHistogramShiftD, |
| | RandHistogramShiftDict, |
| | RandKSpaceSpikeNoised, |
| | RandKSpaceSpikeNoiseD, |
| | RandKSpaceSpikeNoiseDict, |
| | RandRicianNoised, |
| | RandRicianNoiseD, |
| | RandRicianNoiseDict, |
| | RandScaleIntensityd, |
| | RandScaleIntensityD, |
| | RandScaleIntensityDict, |
| | RandScaleIntensityFixedMeand, |
| | RandScaleIntensityFixedMeanD, |
| | RandScaleIntensityFixedMeanDict, |
| | RandShiftIntensityd, |
| | RandShiftIntensityD, |
| | RandShiftIntensityDict, |
| | RandStdShiftIntensityd, |
| | RandStdShiftIntensityD, |
| | RandStdShiftIntensityDict, |
| | SavitzkyGolaySmoothd, |
| | SavitzkyGolaySmoothD, |
| | SavitzkyGolaySmoothDict, |
| | ScaleIntensityd, |
| | ScaleIntensityD, |
| | ScaleIntensityDict, |
| | ScaleIntensityRanged, |
| | ScaleIntensityRangeD, |
| | ScaleIntensityRangeDict, |
| | ScaleIntensityRangePercentilesd, |
| | ScaleIntensityRangePercentilesD, |
| | ScaleIntensityRangePercentilesDict, |
| | ShiftIntensityd, |
| | ShiftIntensityD, |
| | ShiftIntensityDict, |
| | StdShiftIntensityd, |
| | StdShiftIntensityD, |
| | StdShiftIntensityDict, |
| | ThresholdIntensityd, |
| | ThresholdIntensityD, |
| | ThresholdIntensityDict, |
| | ) |
| | from .inverse import InvertibleTransform, TraceableTransform |
| | from .inverse_batch_transform import BatchInverseTransform, Decollated, DecollateD, DecollateDict |
| | from .io.array import SUPPORTED_READERS, LoadImage, SaveImage |
| | from .io.dictionary import LoadImaged, LoadImageD, LoadImageDict, SaveImaged, SaveImageD, SaveImageDict |
| | from .lazy.array import ApplyPending |
| | from .lazy.dictionary import ApplyPendingd, ApplyPendingD, ApplyPendingDict |
| | from .lazy.functional import apply_pending |
| | from .lazy.utils import combine_transforms, resample |
| | from .meta_utility.dictionary import ( |
| | FromMetaTensord, |
| | FromMetaTensorD, |
| | FromMetaTensorDict, |
| | ToMetaTensord, |
| | ToMetaTensorD, |
| | ToMetaTensorDict, |
| | ) |
| | from .nvtx import ( |
| | Mark, |
| | Markd, |
| | MarkD, |
| | MarkDict, |
| | RandMark, |
| | RandMarkd, |
| | RandMarkD, |
| | RandMarkDict, |
| | RandRangePop, |
| | RandRangePopd, |
| | RandRangePopD, |
| | RandRangePopDict, |
| | RandRangePush, |
| | RandRangePushd, |
| | RandRangePushD, |
| | RandRangePushDict, |
| | RangePop, |
| | RangePopd, |
| | RangePopD, |
| | RangePopDict, |
| | RangePush, |
| | RangePushd, |
| | RangePushD, |
| | RangePushDict, |
| | ) |
| | from .post.array import ( |
| | Activations, |
| | AsDiscrete, |
| | DistanceTransformEDT, |
| | FillHoles, |
| | Invert, |
| | KeepLargestConnectedComponent, |
| | LabelFilter, |
| | LabelToContour, |
| | MeanEnsemble, |
| | ProbNMS, |
| | RemoveSmallObjects, |
| | SobelGradients, |
| | VoteEnsemble, |
| | ) |
| | from .post.dictionary import ( |
| | ActivationsD, |
| | Activationsd, |
| | ActivationsDict, |
| | AsDiscreteD, |
| | AsDiscreted, |
| | AsDiscreteDict, |
| | DistanceTransformEDTd, |
| | DistanceTransformEDTD, |
| | DistanceTransformEDTDict, |
| | Ensembled, |
| | EnsembleD, |
| | EnsembleDict, |
| | FillHolesD, |
| | FillHolesd, |
| | FillHolesDict, |
| | InvertD, |
| | Invertd, |
| | InvertDict, |
| | KeepLargestConnectedComponentD, |
| | KeepLargestConnectedComponentd, |
| | KeepLargestConnectedComponentDict, |
| | LabelFilterD, |
| | LabelFilterd, |
| | LabelFilterDict, |
| | LabelToContourD, |
| | LabelToContourd, |
| | LabelToContourDict, |
| | MeanEnsembleD, |
| | MeanEnsembled, |
| | MeanEnsembleDict, |
| | ProbNMSD, |
| | ProbNMSd, |
| | ProbNMSDict, |
| | RemoveSmallObjectsD, |
| | RemoveSmallObjectsd, |
| | RemoveSmallObjectsDict, |
| | SaveClassificationD, |
| | SaveClassificationd, |
| | SaveClassificationDict, |
| | SobelGradientsd, |
| | SobelGradientsD, |
| | SobelGradientsDict, |
| | VoteEnsembleD, |
| | VoteEnsembled, |
| | VoteEnsembleDict, |
| | ) |
| | from .regularization.array import CutMix, CutOut, MixUp |
| | from .regularization.dictionary import ( |
| | CutMixd, |
| | CutMixD, |
| | CutMixDict, |
| | CutOutd, |
| | CutOutD, |
| | CutOutDict, |
| | MixUpd, |
| | MixUpD, |
| | MixUpDict, |
| | ) |
| | from .signal.array import ( |
| | SignalContinuousWavelet, |
| | SignalFillEmpty, |
| | SignalRandAddGaussianNoise, |
| | SignalRandAddSine, |
| | SignalRandAddSinePartial, |
| | SignalRandAddSquarePulse, |
| | SignalRandAddSquarePulsePartial, |
| | SignalRandDrop, |
| | SignalRandScale, |
| | SignalRandShift, |
| | SignalRemoveFrequency, |
| | ) |
| | from .signal.dictionary import SignalFillEmptyd, SignalFillEmptyD, SignalFillEmptyDict |
| | from .smooth_field.array import ( |
| | RandSmoothDeform, |
| | RandSmoothFieldAdjustContrast, |
| | RandSmoothFieldAdjustIntensity, |
| | SmoothField, |
| | ) |
| | from .smooth_field.dictionary import ( |
| | RandSmoothDeformd, |
| | RandSmoothDeformD, |
| | RandSmoothDeformDict, |
| | RandSmoothFieldAdjustContrastd, |
| | RandSmoothFieldAdjustContrastD, |
| | RandSmoothFieldAdjustContrastDict, |
| | RandSmoothFieldAdjustIntensityd, |
| | RandSmoothFieldAdjustIntensityD, |
| | RandSmoothFieldAdjustIntensityDict, |
| | ) |
| | from .spatial.array import ( |
| | Affine, |
| | AffineGrid, |
| | Flip, |
| | GridDistortion, |
| | GridPatch, |
| | GridSplit, |
| | Orientation, |
| | Rand2DElastic, |
| | Rand3DElastic, |
| | RandAffine, |
| | RandAffineGrid, |
| | RandAxisFlip, |
| | RandDeformGrid, |
| | RandFlip, |
| | RandGridDistortion, |
| | RandGridPatch, |
| | RandRotate, |
| | RandRotate90, |
| | RandSimulateLowResolution, |
| | RandZoom, |
| | Resample, |
| | ResampleToMatch, |
| | Resize, |
| | Rotate, |
| | Rotate90, |
| | Spacing, |
| | SpatialResample, |
| | Zoom, |
| | ) |
| | from .spatial.dictionary import ( |
| | Affined, |
| | AffineD, |
| | AffineDict, |
| | Flipd, |
| | FlipD, |
| | FlipDict, |
| | GridDistortiond, |
| | GridDistortionD, |
| | GridDistortionDict, |
| | GridPatchd, |
| | GridPatchD, |
| | GridPatchDict, |
| | GridSplitd, |
| | GridSplitD, |
| | GridSplitDict, |
| | Orientationd, |
| | OrientationD, |
| | OrientationDict, |
| | Rand2DElasticd, |
| | Rand2DElasticD, |
| | Rand2DElasticDict, |
| | Rand3DElasticd, |
| | Rand3DElasticD, |
| | Rand3DElasticDict, |
| | RandAffined, |
| | RandAffineD, |
| | RandAffineDict, |
| | RandAxisFlipd, |
| | RandAxisFlipD, |
| | RandAxisFlipDict, |
| | RandFlipd, |
| | RandFlipD, |
| | RandFlipDict, |
| | RandGridDistortiond, |
| | RandGridDistortionD, |
| | RandGridDistortionDict, |
| | RandGridPatchd, |
| | RandGridPatchD, |
| | RandGridPatchDict, |
| | RandRotate90d, |
| | RandRotate90D, |
| | RandRotate90Dict, |
| | RandRotated, |
| | RandRotateD, |
| | RandRotateDict, |
| | RandSimulateLowResolutiond, |
| | RandSimulateLowResolutionD, |
| | RandSimulateLowResolutionDict, |
| | RandZoomd, |
| | RandZoomD, |
| | RandZoomDict, |
| | ResampleToMatchd, |
| | ResampleToMatchD, |
| | ResampleToMatchDict, |
| | Resized, |
| | ResizeD, |
| | ResizeDict, |
| | Rotate90d, |
| | Rotate90D, |
| | Rotate90Dict, |
| | Rotated, |
| | RotateD, |
| | RotateDict, |
| | Spacingd, |
| | SpacingD, |
| | SpacingDict, |
| | SpatialResampled, |
| | SpatialResampleD, |
| | SpatialResampleDict, |
| | Zoomd, |
| | ZoomD, |
| | ZoomDict, |
| | ) |
| | from .spatial.functional import spatial_resample |
| | from .traits import LazyTrait, MultiSampleTrait, RandomizableTrait, ThreadUnsafe |
| | from .transform import LazyTransform, MapTransform, Randomizable, RandomizableTransform, Transform, apply_transform |
| | from .utility.array import ( |
| | AddCoordinateChannels, |
| | AddExtremePointsChannel, |
| | AsChannelLast, |
| | CastToType, |
| | ClassesToIndices, |
| | ConvertToMultiChannelBasedOnBratsClasses, |
| | CuCIM, |
| | DataStats, |
| | EnsureChannelFirst, |
| | EnsureType, |
| | FgBgToIndices, |
| | Identity, |
| | ImageFilter, |
| | IntensityStats, |
| | LabelToMask, |
| | Lambda, |
| | MapLabelValue, |
| | RandCuCIM, |
| | RandIdentity, |
| | RandImageFilter, |
| | RandLambda, |
| | RemoveRepeatedChannel, |
| | RepeatChannel, |
| | SimulateDelay, |
| | SplitDim, |
| | SqueezeDim, |
| | ToCupy, |
| | ToDevice, |
| | ToNumpy, |
| | ToPIL, |
| | TorchVision, |
| | ToTensor, |
| | Transpose, |
| | ) |
| | from .utility.dictionary import ( |
| | AddCoordinateChannelsd, |
| | AddCoordinateChannelsD, |
| | AddCoordinateChannelsDict, |
| | AddExtremePointsChanneld, |
| | AddExtremePointsChannelD, |
| | AddExtremePointsChannelDict, |
| | AsChannelLastd, |
| | AsChannelLastD, |
| | AsChannelLastDict, |
| | CastToTyped, |
| | CastToTypeD, |
| | CastToTypeDict, |
| | ClassesToIndicesd, |
| | ClassesToIndicesD, |
| | ClassesToIndicesDict, |
| | ConcatItemsd, |
| | ConcatItemsD, |
| | ConcatItemsDict, |
| | ConvertToMultiChannelBasedOnBratsClassesd, |
| | ConvertToMultiChannelBasedOnBratsClassesD, |
| | ConvertToMultiChannelBasedOnBratsClassesDict, |
| | CopyItemsd, |
| | CopyItemsD, |
| | CopyItemsDict, |
| | CuCIMd, |
| | CuCIMD, |
| | CuCIMDict, |
| | DataStatsd, |
| | DataStatsD, |
| | DataStatsDict, |
| | DeleteItemsd, |
| | DeleteItemsD, |
| | DeleteItemsDict, |
| | EnsureChannelFirstd, |
| | EnsureChannelFirstD, |
| | EnsureChannelFirstDict, |
| | EnsureTyped, |
| | EnsureTypeD, |
| | EnsureTypeDict, |
| | FgBgToIndicesd, |
| | FgBgToIndicesD, |
| | FgBgToIndicesDict, |
| | FlattenSubKeysd, |
| | FlattenSubKeysD, |
| | FlattenSubKeysDict, |
| | Identityd, |
| | IdentityD, |
| | IdentityDict, |
| | ImageFilterd, |
| | ImageFilterD, |
| | ImageFilterDict, |
| | IntensityStatsd, |
| | IntensityStatsD, |
| | IntensityStatsDict, |
| | LabelToMaskd, |
| | LabelToMaskD, |
| | LabelToMaskDict, |
| | Lambdad, |
| | LambdaD, |
| | LambdaDict, |
| | MapLabelValued, |
| | MapLabelValueD, |
| | MapLabelValueDict, |
| | RandCuCIMd, |
| | RandCuCIMD, |
| | RandCuCIMDict, |
| | RandImageFilterd, |
| | RandImageFilterD, |
| | RandImageFilterDict, |
| | RandLambdad, |
| | RandLambdaD, |
| | RandLambdaDict, |
| | RandTorchVisiond, |
| | RandTorchVisionD, |
| | RandTorchVisionDict, |
| | RemoveRepeatedChanneld, |
| | RemoveRepeatedChannelD, |
| | RemoveRepeatedChannelDict, |
| | RepeatChanneld, |
| | RepeatChannelD, |
| | RepeatChannelDict, |
| | SelectItemsd, |
| | SelectItemsD, |
| | SelectItemsDict, |
| | SimulateDelayd, |
| | SimulateDelayD, |
| | SimulateDelayDict, |
| | SplitDimd, |
| | SplitDimD, |
| | SplitDimDict, |
| | SqueezeDimd, |
| | SqueezeDimD, |
| | SqueezeDimDict, |
| | ToCupyd, |
| | ToCupyD, |
| | ToCupyDict, |
| | ToDeviced, |
| | ToDeviceD, |
| | ToDeviceDict, |
| | ToNumpyd, |
| | ToNumpyD, |
| | ToNumpyDict, |
| | ToPILd, |
| | ToPILD, |
| | ToPILDict, |
| | TorchVisiond, |
| | TorchVisionD, |
| | TorchVisionDict, |
| | ToTensord, |
| | ToTensorD, |
| | ToTensorDict, |
| | Transposed, |
| | TransposeD, |
| | TransposeDict, |
| | ) |
| | from .utils import ( |
| | Fourier, |
| | allow_missing_keys_mode, |
| | attach_hook, |
| | check_non_lazy_pending_ops, |
| | compute_divisible_spatial_size, |
| | convert_applied_interp_mode, |
| | convert_pad_mode, |
| | convert_to_contiguous, |
| | copypaste_arrays, |
| | create_control_grid, |
| | create_grid, |
| | create_rotate, |
| | create_scale, |
| | create_shear, |
| | create_translate, |
| | distance_transform_edt, |
| | equalize_hist, |
| | extreme_points_to_image, |
| | generate_label_classes_crop_centers, |
| | generate_pos_neg_label_crop_centers, |
| | generate_spatial_bounding_box, |
| | get_extreme_points, |
| | get_largest_connected_component_mask, |
| | get_number_image_type_conversions, |
| | get_transform_backends, |
| | img_bounds, |
| | in_bounds, |
| | is_empty, |
| | is_positive, |
| | map_binary_to_indices, |
| | map_classes_to_indices, |
| | map_spatial_axes, |
| | print_transform_backends, |
| | rand_choice, |
| | remove_small_objects, |
| | rescale_array, |
| | rescale_array_int_max, |
| | rescale_instance_array, |
| | reset_ops_id, |
| | resize_center, |
| | resolves_modes, |
| | sync_meta_info, |
| | weighted_patch_samples, |
| | zero_margins, |
| | ) |
| | from .utils_pytorch_numpy_unification import ( |
| | allclose, |
| | any_np_pt, |
| | ascontiguousarray, |
| | clip, |
| | concatenate, |
| | cumsum, |
| | floor_divide, |
| | in1d, |
| | isfinite, |
| | isnan, |
| | maximum, |
| | mode, |
| | moveaxis, |
| | nonzero, |
| | percentile, |
| | ravel, |
| | repeat, |
| | stack, |
| | unravel_index, |
| | where, |
| | ) |
| |
|
