ALPaCA_V1
Collection
The datasets, codes, and checkpoints for ALPaCA-v1 training and evaluation. • 13 items • Updated
f1024 string | f2048 string | f4096 string | site string | description string | slide_id string | Conch int64 | MUSK int64 | UNI int64 | PathGen int64 |
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/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1ICLZ-0526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1ICLZ-0526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1ICLZ-0526_1_1024.npy | Thyroid | Thyroid tissue showing nodularity with slightly nodular features and generally poor preservation, focally bordering on severe autolysis. | GTEX-1ICLZ-0526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-P44H-0726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-P44H-0726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-P44H-0726_1_1024.npy | Heart - Left Ventricle | This slide from the left ventricle of the heart reveals centrally poorly fixed/autolytic tissue with no inflammation noted, raising doubt regarding infarction, pending glass review. | GTEX-P44H-0726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GZ2Q-0826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GZ2Q-0826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GZ2Q-0826_1_1024.npy | Thyroid | Thyroid slide reveals a well-circumscribed likely adenomatous nodule with interstitial fibrosis and variably sized follicles. | GTEX-1GZ2Q-0826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-P4QS-1226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-P4QS-1226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-P4QS-1226_1_1024.npy | Kidney - Medulla | This slide from the kidney medulla reveals a composition of nearly pure tubules with a few glomeruli, distinct from the cortex region. | GTEX-P4QS-1226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-R55F-2126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-R55F-2126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-R55F-2126_1_1024.npy | Pancreas | This slide reveals pancreatic tissue with notable adipose infiltration in varying proportions. | GTEX-R55F-2126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-YECK-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-YECK-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-YECK-1026_1_1024.npy | Heart - Left Ventricle | This slide reveals several remote infarcts in the left ventricle of the heart, delineated and approximately 1x0.5mm in size. | GTEX-YECK-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-U8T8-0926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-U8T8-0926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-U8T8-0926_1_1024.npy | Spleen | Spleen pathology assessment shows moderate congestion indicative of vascular engorgement. | GTEX-U8T8-0926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14A5I-2326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14A5I-2326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14A5I-2326_1_1024.npy | Kidney - Cortex | Kidney Cortex pathology assessment: Presence of glomeruli with autolyzed tubules noted. | GTEX-14A5I-2326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-147JS-0526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-147JS-0526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-147JS-0526_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide showing interstitial fat and vascular elements, with a representative delineation. | GTEX-147JS-0526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15RJE-1526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15RJE-1526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15RJE-1526_1_1024.npy | Kidney - Cortex | This slide from the kidney cortex reveals severe autolysis of tubules with no lesions identified. | GTEX-15RJE-1526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-145MG-0126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-145MG-0126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-145MG-0126_1_1024.npy | Adipose - Subcutaneous | Adipose Subcutaneous tissue slide demonstrates 20% fibrous content, highlighting notable pathology findings. | GTEX-145MG-0126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1M5QR-1426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1M5QR-1426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1M5QR-1426_1_1024.npy | Prostate | This slide reveals prostate tissue with glands showing sloughed epithelium admixed with stroma, and surrounding fat, vessels, and ganglion. | GTEX-1M5QR-1426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-17F97-0826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-17F97-0826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-17F97-0826_1_1024.npy | Artery - Coronary | Coronary artery pathology assessment shows calcification and sclerotic changes with fragmented tissue and absence of normal tissue, suggestive of previous coronary bypass surgery. | GTEX-17F97-0826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PVOW-1626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PVOW-1626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PVOW-1626_1_1024.npy | Esophagus - Mucosa | Esophagus Mucosa - This slide reveals notable epithelial changes in the mucosa of the esophagus. | GTEX-PVOW-1626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11DZ1-0526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11DZ1-0526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11DZ1-0526_1_1024.npy | Heart - Left Ventricle | This slide from the left ventricle of the heart reveals hypertrophied fibers with hypereosinophilic areas suggestive of ischemic changes. | GTEX-11DZ1-0526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-QMRM-2026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-QMRM-2026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-QMRM-2026_1_1024.npy | Artery - Tibial | Artery Tibial slide showing folded and polypoid intima in two arteries | GTEX-QMRM-2026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-U8T8-2226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-U8T8-2226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-U8T8-2226_1_1024.npy | Lung | This slide from the lung reveals small arteries thickened and presence of heart failure cells. | GTEX-U8T8-2226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1O9I2-1826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1O9I2-1826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1O9I2-1826_1_1024.npy | Esophagus - Muscularis | Esophagus Muscularis pathology slide confirms target muscularis. | GTEX-1O9I2-1826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1PBJJ-2226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1PBJJ-2226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1PBJJ-2226_1_1024.npy | Small Intestine - Terminal Ileum | This slide from the small intestine terminal ileum reveals mucosal autolysis with a good residual lymphoid component. | GTEX-1PBJJ-2226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-144FL-0326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-144FL-0326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-144FL-0326_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide showing atrophy with notable interstitial fat/vascular tissue involvement. | GTEX-144FL-0326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11TUW-1526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11TUW-1526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11TUW-1526_1_1024.npy | Esophagus - Gastroesophageal Junction | Esophagus Gastroesophageal Junction slide showing muscularis and attached adipose tissue with vessels. | GTEX-11TUW-1526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1B8SF-0826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1B8SF-0826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1B8SF-0826_1_1024.npy | Lung | This lung slide demonstrates severe congestion and fresh hemorrhage, with involvement of few larger vessels. | GTEX-1B8SF-0826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-RVPU-0926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-RVPU-0926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-RVPU-0926_1_1024.npy | Spleen | This slide of the spleen reveals poorly processed and badly autolyzed tissue characteristics. | GTEX-RVPU-0926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11P7K-2226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11P7K-2226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11P7K-2226_1_1024.npy | Nerve - Tibial | This slide shows a pathology assessment of the tibial nerve, highlighting well-trimmed sections with internal fatty connective tissue present. | GTEX-11P7K-2226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1AMEY-1626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1AMEY-1626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1AMEY-1626_1_1024.npy | Nerve - Tibial | This slide of Tibial Nerve reveals well-dissected tissue with notable internal fibrofatty content. | GTEX-1AMEY-1626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12BJ1-1226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12BJ1-1226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12BJ1-1226_1_1024.npy | Prostate | Prostate tissue showing glandular epithelial hyperplasia with well-preserved features. | GTEX-12BJ1-1226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11WQC-2826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11WQC-2826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11WQC-2826_1_1024.npy | Nerve - Tibial | Nerve Tibial pathology slide demonstrating well-trimmed sections for assessment. | GTEX-11WQC-2826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1ICG6-1926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1ICG6-1926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1ICG6-1926_1_1024.npy | Esophagus - Mucosa | Esophagus Mucosa - Slide showing partially sloughed epithelium. | GTEX-1ICG6-1926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XQ3S-0326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XQ3S-0326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XQ3S-0326_1_1024.npy | Artery - Tibial | This slide of Tibial Artery shows clean specimens with good clean aliquots. | GTEX-XQ3S-0326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1LNCM-1226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1LNCM-1226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1LNCM-1226_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide showing presence of fat and tendon structures. | GTEX-1LNCM-1226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1314G-0226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1314G-0226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1314G-0226_1_1024.npy | Thyroid | This slide shows skeletal muscle tissue, not thyroid, with no evidence of tumor pathology. | GTEX-1314G-0226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15RJ7-1726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15RJ7-1726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15RJ7-1726_1_1024.npy | Colon - Sigmoid | This slide from the sigmoid colon reveals notable findings in the target muscularis, highlighting key diagnostic categories related to the tissue condition. | GTEX-15RJ7-1726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15F5U-5013_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15F5U-5013_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15F5U-5013_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide showing notable presence of prominent blood vessels, resembling a PAXgene sample. | GTEX-15F5U-5013 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1HSMP-1326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1HSMP-1326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1HSMP-1326_1_1024.npy | Lung | Lung tissue showing minimal congestion | GTEX-1HSMP-1326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-Q2AI-1526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-Q2AI-1526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-Q2AI-1526_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide showing minimal fat and stroma, highlighting tissue characteristics. | GTEX-Q2AI-1526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GF9X-1826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GF9X-1826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GF9X-1826_1_1024.npy | Artery - Tibial | Artery Tibial pathology slide demonstrating well-trimmed features. | GTEX-1GF9X-1826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15EO6-1426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15EO6-1426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15EO6-1426_1_1024.npy | Kidney - Cortex | Kidney Cortex slide showing presence of glomeruli and autolyzed tubules | GTEX-15EO6-1426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14PJN-0826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14PJN-0826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14PJN-0826_1_1024.npy | Small Intestine - Terminal Ileum | This slide reveals correct target mucosa in the small intestine terminal ileum with insufficient target lymphoid aggregates. | GTEX-14PJN-0826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6RS-2826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6RS-2826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6RS-2826_1_1024.npy | Vagina | Vagina pathology assessment shows sloughed epithelium with a deep aspect revealing a fatty layer up to 1.5mm thick on 3 pieces. | GTEX-1F6RS-2826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13PL7-1426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13PL7-1426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13PL7-1426_1_1024.npy | Thyroid | Thyroid tissue slide reveals no abnormalities in the pathology assessment. | GTEX-13PL7-1426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GN73-0926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GN73-0926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GN73-0926_1_1024.npy | Breast - Mammary Tissue | This slide reveals fibroadipose tissue without mammary tissue in the breast, indicating a non-tumor pathology assessment. | GTEX-1GN73-0926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1KD5A-0626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1KD5A-0626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1KD5A-0626_1_1024.npy | Artery - Tibial | Artery Tibial pathology slide showing mild plaque formation. | GTEX-1KD5A-0626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1QMI2-1626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1QMI2-1626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1QMI2-1626_1_1024.npy | Adipose - Visceral (Omentum) | Visceral adipose tissue slide reveals notable fascia/mesothelial hyperplasia, indicative of hyperplasia pathology. | GTEX-1QMI2-1626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15FZZ-1726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15FZZ-1726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15FZZ-1726_1_1024.npy | Colon - Transverse | Colon Transverse slide showing absence of mucosa in one piece | GTEX-15FZZ-1726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6RS-0926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6RS-0926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6RS-0926_1_1024.npy | Heart - Atrial Appendage | This slide of the atrial appendage from the heart reveals significant presence of blood clots and internal fat, indicative of potential cardiovascular pathology. | GTEX-1F6RS-0926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13FH7-0526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13FH7-0526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13FH7-0526_1_1024.npy | Esophagus - Mucosa | Esophagus Mucosa pathology assessment showing fragments of vegetable matter. | GTEX-13FH7-0526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12BJ1-2626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12BJ1-2626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12BJ1-2626_1_1024.npy | Nerve - Tibial | Nerve Tibial pathology assessment: clean specimens with no adherent fat observed. | GTEX-12BJ1-2626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XQ8I-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XQ8I-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XQ8I-1026_1_1024.npy | Testis | This slide shows spermatogenesis in the testis tissue. | GTEX-XQ8I-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZF2S-0126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZF2S-0126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZF2S-0126_1_1024.npy | Adrenal Gland | Adrenal Gland pathology slide showing medullary hyperplasia with 20% external fat involvement. | GTEX-ZF2S-0126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-OXRO-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-OXRO-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-OXRO-1026_1_1024.npy | Fallopian Tube | This slide shows fallopian tube epithelium with notable pathology findings. | GTEX-OXRO-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6I4-1426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6I4-1426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6I4-1426_1_1024.npy | Testis | Testis pathology assessment: highlighting spermatogenesis presence/reduction. | GTEX-1F6I4-1426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PLZ4-1126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PLZ4-1126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PLZ4-1126_1_1024.npy | Nerve - Tibial | This slide shows a non-tumor pathology assessment of tibial nerve tissue with notable intermingled fat content. | GTEX-PLZ4-1126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-S4Q7-0426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-S4Q7-0426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-S4Q7-0426_1_1024.npy | Lung | Lung pathology slide showing diffuse mild chronic active pneumonitis and edema. | GTEX-S4Q7-0426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1269C-2126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1269C-2126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1269C-2126_1_1024.npy | Small Intestine - Terminal Ileum | This slide of the small intestine terminal ileum reveals autolyzed mucosa with residual lymphoid component, well trimmed of muscularis. | GTEX-1269C-2126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GF9W-1326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GF9W-1326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1GF9W-1326_1_1024.npy | Kidney - Cortex | Kidney Cortex pathology assessment reveals congestion and hyalinization with focal severe autolysis and rare hyalinized glomeruli outlined. | GTEX-1GF9W-1326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-18D9B-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-18D9B-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-18D9B-1026_1_1024.npy | Lung | This lung slide exhibits severe interstitial and vascular fibrosis with numerous pigmented alveolar macrophages (heart failure cells). | GTEX-18D9B-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11OC5-0426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11OC5-0426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11OC5-0426_1_1024.npy | Artery - Tibial | Artery Tibial slide reveals clean specimens with minute adherent fascial nubbin, delineated. | GTEX-11OC5-0426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14PHW-0726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14PHW-0726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-14PHW-0726_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide showing approximately 20% interstitial fat and vessel representation. | GTEX-14PHW-0726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13FTZ-2226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13FTZ-2226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13FTZ-2226_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide demonstrating minimal internal fat content | GTEX-13FTZ-2226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZYFD-3026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZYFD-3026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZYFD-3026_1_1024.npy | Brain - Cortex | Brain Cortex pathology slide showing absence of hemorrhage | GTEX-ZYFD-3026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-111YS-0126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-111YS-0126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-111YS-0126_1_1024.npy | Adrenal Gland | Adrenal Gland pathology assessment shows notable features of external fat presence, reflecting non-tumor pathology findings. | GTEX-111YS-0126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13JUV-2126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13JUV-2126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13JUV-2126_1_1024.npy | Esophagus - Gastroesophageal Junction | Esophagus Gastroesophageal Junction slide shows a mix of muscularis and fibrofatty tissue with scant muscularis, highlighting the tissue composition. | GTEX-13JUV-2126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-148VJ-0526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-148VJ-0526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-148VJ-0526_1_1024.npy | Nerve - Tibial | Nerve Tibial pathology slide with nubbins adherent fat up to 2 mm, delineated. | GTEX-148VJ-0526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PWCY-1726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PWCY-1726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-PWCY-1726_1_1024.npy | Vagina | This slide shows a vaginal tissue sample with a squamous lining, highlighting the non-tumor pathology features observed. | GTEX-PWCY-1726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1313W-2926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1313W-2926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1313W-2926_1_1024.npy | Vagina | This slide shows partially denuded squamous epithelium in the vagina. | GTEX-1313W-2926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XV7Q-2926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XV7Q-2926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XV7Q-2926_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide demonstrating approximately 35-40% interstitial fat content. | GTEX-XV7Q-2926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-131XF-0526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-131XF-0526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-131XF-0526_1_1024.npy | Artery - Coronary | Coronary artery pathology assessment: Mildly sclerotic artery with external fat and myocardium, revealing sclerotic changes. | GTEX-131XF-0526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12WSM-0226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12WSM-0226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12WSM-0226_1_1024.npy | Adipose - Subcutaneous | Adipose Subcutaneous tissue slide demonstrates fascia/fibrous tissue composition of approximately 10-15% total. | GTEX-12WSM-0226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-VJWN-0126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-VJWN-0126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-VJWN-0126_1_1024.npy | Skin - Sun Exposed (Lower leg) | Skin from the sun-exposed lower leg showing subcutaneous adipose tissue, highlighting notable pathology features. | GTEX-VJWN-0126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1H3NZ-2226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1H3NZ-2226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1H3NZ-2226_1_1024.npy | Stomach | Stomach slide showing varying degrees of mucosal autolysis. | GTEX-1H3NZ-2226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-WHSE-3026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-WHSE-3026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-WHSE-3026_1_1024.npy | Brain - Cortex | Brain Cortex pathology assessment showing notable findings in non-tumor tissue. | GTEX-WHSE-3026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1IDJF-1326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1IDJF-1326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1IDJF-1326_1_1024.npy | Esophagus - Muscularis | Esophagus Muscularis pathology assessment showing well-trimmed muscularis tissue. | GTEX-1IDJF-1326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-183FY-0826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-183FY-0826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-183FY-0826_1_1024.npy | Minor Salivary Gland | This slide shows skeletal muscle/stroma with a small amount of glandular tissue in a minor salivary gland sample. | GTEX-183FY-0826 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-WHSB-0226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-WHSB-0226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-WHSB-0226_1_1024.npy | Artery - Aorta | This slide of Aorta artery reveals serosa/vasa vasorum involvement with well-delineated intima/media layers. | GTEX-WHSB-0226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1B8KE-1626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1B8KE-1626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1B8KE-1626_1_1024.npy | Esophagus - Muscularis | Esophagus Muscularis pathology slide revealing confirmed target muscularis with a single mucus gland delineated. | GTEX-1B8KE-1626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-144GM-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-144GM-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-144GM-1026_1_1024.npy | Small Intestine - Terminal Ileum | This slide from the small intestine terminal ileum reveals clean specimens with lymphoid aggregates comprising approximately 20-30%, indicating a good specimen quality. | GTEX-144GM-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-S4P3-1126_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-S4P3-1126_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-S4P3-1126_1_1024.npy | Vagina | This slide reveals non-tumor pathology findings in the vagina, highlighting notable diagnostic categories related to the tissue condition. | GTEX-S4P3-1126 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13CZU-0926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13CZU-0926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13CZU-0926_1_1024.npy | Colon - Transverse | This slide from the transverse colon reveals notable pathology information related to the mucosa and submucosa layers. | GTEX-13CZU-0926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-OHPN-2626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-OHPN-2626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-OHPN-2626_1_1024.npy | Brain - Cerebellum | This slide reveals granular layer changes and cortex abnormalities in the cerebellum tissue. | GTEX-OHPN-2626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1N2DW-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1N2DW-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1N2DW-1026_1_1024.npy | Artery - Aorta | This slide shows a non-tumor pathology assessment of the aorta artery, highlighting notable findings in the attached adventitia. | GTEX-1N2DW-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13PVQ-2626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13PVQ-2626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13PVQ-2626_1_1024.npy | Prostate | Prostate tissue slide displays varying degrees of gland preservation, highlighting histological differences within the specimen. | GTEX-13PVQ-2626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13N2G-2926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13N2G-2926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13N2G-2926_1_1024.npy | Pituitary | This slide reveals adenohypophysis and an attached small fragment of neurohypophysis in the pituitary tissue. | GTEX-13N2G-2926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12WSD-2526_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12WSD-2526_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-12WSD-2526_1_1024.npy | Small Intestine - Terminal Ileum | This slide shows fragmented small intestine with notable lymphoid tissue involvement, comprising approximately 5-10% of the total tissue examined. | GTEX-12WSD-2526 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13JVG-1626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13JVG-1626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13JVG-1626_1_1024.npy | Pancreas | This slide shows a severely autolyzed pancreas with notable pathology features. | GTEX-13JVG-1626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15TU5-2226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15TU5-2226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15TU5-2226_1_1024.npy | Kidney - Cortex | Kidney Cortex pathology assessment shows tubules as the main site of autolysis with no evidence of active or chronic disease. | GTEX-15TU5-2226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1KD4Q-2726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1KD4Q-2726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1KD4Q-2726_1_1024.npy | Small Intestine - Terminal Ileum | This slide from the small intestine terminal ileum reveals several foci of lymphoid tissue amidst predominantly muscularis propria, suggestive of a mixed tissue composition. | GTEX-1KD4Q-2726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-Y5V5-1926_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-Y5V5-1926_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-Y5V5-1926_1_1024.npy | Colon - Sigmoid | This slide shows colonic mucosa from the sigmoid colon with moderate to severe autolysis. | GTEX-Y5V5-1926 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1NV5F-1226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1NV5F-1226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1NV5F-1226_1_1024.npy | Heart - Atrial Appendage | Pathology assessment of the atrial appendage from the heart slide reveals notable internal fat content. | GTEX-1NV5F-1226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13NZB-2326_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13NZB-2326_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13NZB-2326_1_1024.npy | Nerve - Tibial | This slide from the tibial nerve reveals a small amount of attached and internal fat, within normal limits. | GTEX-13NZB-2326 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13CF3-2426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13CF3-2426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13CF3-2426_1_1024.npy | Skin - Sun Exposed (Lower leg) | Skin from sun-exposed lower leg showing minimal intradermal fat deposition. | GTEX-13CF3-2426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15EOM-0726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15EOM-0726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-15EOM-0726_1_1024.npy | Heart - Atrial Appendage | This slide of the atrial appendage from the heart reveals notable fat content, characteristic of the tissue condition observed. | GTEX-15EOM-0726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1O97I-1026_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1O97I-1026_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1O97I-1026_1_1024.npy | Thyroid | Thyroid tissue slide depicting blood vessels at one pole, highlighting vascular pathology features. | GTEX-1O97I-1026 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-18D9U-1426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-18D9U-1426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-18D9U-1426_1_1024.npy | Heart - Atrial Appendage | Heart Atrial Appendage pathology assessment shows no abnormalities. | GTEX-18D9U-1426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11ZTS-1226_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11ZTS-1226_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-11ZTS-1226_1_1024.npy | Lung | This lung slide demonstrates mild congestion, indicative of a congestive pathology condition. | GTEX-11ZTS-1226 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-REY6-2426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-REY6-2426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-REY6-2426_1_1024.npy | Breast - Mammary Tissue | This slide shows non-tumor breast mammary tissue with predominant adipose tissue and absence of mammary ducts. | GTEX-REY6-2426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1J8EW-1426_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1J8EW-1426_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1J8EW-1426_1_1024.npy | Esophagus - Gastroesophageal Junction | Esophagus Gastroesophageal Junction slide shows prominent fat and fibrous content with fibrosis noted, along with reduced muscle content in one area. | GTEX-1J8EW-1426 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6IF-0726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6IF-0726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-1F6IF-0726_1_1024.npy | Skin - Sun Exposed (Lower leg) | Skin from sun-exposed lower leg showing squamous epithelium with variable thickness. | GTEX-1F6IF-0726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13YAN-1726_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13YAN-1726_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-13YAN-1726_1_1024.npy | Spleen | Spleen showing marked congestion | GTEX-13YAN-1726 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XUJ4-2626_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XUJ4-2626_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-XUJ4-2626_1_1024.npy | Muscle - Skeletal | Skeletal muscle slide demonstrating 10-20% interstitial fat content. | GTEX-XUJ4-2626 | 1 | 1 | 1 | 1 |
/bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZXG5-1826_0_1024.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZXG5-1826_1_512.npy | /bask/projects/p/phwq4930-gbm/Zeyu/WSI_Dataset/Conch/GTEx-Normal/GTEX-ZXG5-1826_1_1024.npy | Small Intestine - Terminal Ileum | This slide shows the small intestine terminal ileum with intact muscularis propria and absence of mucosa, without evidence of ileal lymphoid tissue. | GTEX-ZXG5-1826 | 1 | 1 | 1 | 1 |
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