id int32 0 252k | repo stringlengths 7 55 | path stringlengths 4 127 | func_name stringlengths 1 88 | original_string stringlengths 75 19.8k | language stringclasses 1
value | code stringlengths 75 19.8k | code_tokens list | docstring stringlengths 3 17.3k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 87 242 |
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232,300 | readbeyond/aeneas | aeneas/vad.py | VAD._compute_runs | def _compute_runs(self, array):
"""
Compute runs as a list of arrays,
each containing the indices of a contiguous run.
:param array: the data array
:type array: numpy 1D array
:rtype: list of numpy 1D arrays
"""
if len(array) < 1:
return []
... | python | def _compute_runs(self, array):
"""
Compute runs as a list of arrays,
each containing the indices of a contiguous run.
:param array: the data array
:type array: numpy 1D array
:rtype: list of numpy 1D arrays
"""
if len(array) < 1:
return []
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232,301 | readbeyond/aeneas | aeneas/vad.py | VAD._rolling_window | def _rolling_window(self, array, size):
"""
Compute rolling windows of width ``size`` of the given array.
Return a numpy 2D stride array,
where rows are the windows, each of ``size`` elements.
:param array: the data array
:type array: numpy 1D array (n)
:param ... | python | def _rolling_window(self, array, size):
"""
Compute rolling windows of width ``size`` of the given array.
Return a numpy 2D stride array,
where rows are the windows, each of ``size`` elements.
:param array: the data array
:type array: numpy 1D array (n)
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232,302 | pysam-developers/pysam | pysam/utils.py | PysamDispatcher.usage | def usage(self):
'''return the samtools usage information for this command'''
retval, stderr, stdout = _pysam_dispatch(
self.collection,
self.dispatch,
is_usage=True,
catch_stdout=True)
# some tools write usage to stderr, such as mpileup
if... | python | def usage(self):
'''return the samtools usage information for this command'''
retval, stderr, stdout = _pysam_dispatch(
self.collection,
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is_usage=True,
catch_stdout=True)
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232,303 | pysam-developers/pysam | pysam/Pileup.py | iterate | def iterate(infile):
'''iterate over ``samtools pileup -c`` formatted file.
*infile* can be any iterator over a lines.
The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution`
or :class:`pysam.Pileup.PileupIndel`.
.. note::
The parser converts to 0-based coord... | python | def iterate(infile):
'''iterate over ``samtools pileup -c`` formatted file.
*infile* can be any iterator over a lines.
The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution`
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232,304 | pysam-developers/pysam | pysam/Pileup.py | vcf2pileup | def vcf2pileup(vcf, sample):
'''convert vcf record to pileup record.'''
chromosome = vcf.contig
pos = vcf.pos
reference = vcf.ref
allelles = [reference] + vcf.alt
data = vcf[sample]
# get genotype
genotypes = data["GT"]
if len(genotypes) > 1:
raise ValueError("only single ... | python | def vcf2pileup(vcf, sample):
'''convert vcf record to pileup record.'''
chromosome = vcf.contig
pos = vcf.pos
reference = vcf.ref
allelles = [reference] + vcf.alt
data = vcf[sample]
# get genotype
genotypes = data["GT"]
if len(genotypes) > 1:
raise ValueError("only single ... | [
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232,305 | pysam-developers/pysam | pysam/Pileup.py | iterate_from_vcf | def iterate_from_vcf(infile, sample):
'''iterate over a vcf-formatted file.
*infile* can be any iterator over a lines.
The function yields named tuples of the type
:class:`pysam.Pileup.PileupSubstitution` or
:class:`pysam.Pileup.PileupIndel`.
Positions without a snp will be skipped.
This... | python | def iterate_from_vcf(infile, sample):
'''iterate over a vcf-formatted file.
*infile* can be any iterator over a lines.
The function yields named tuples of the type
:class:`pysam.Pileup.PileupSubstitution` or
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232,306 | pysam-developers/pysam | devtools/import.py | _update_pysam_files | def _update_pysam_files(cf, destdir):
'''update pysam files applying redirection of ouput'''
basename = os.path.basename(destdir)
for filename in cf:
if not filename:
continue
dest = filename + ".pysam.c"
with open(filename, encoding="utf-8") as infile:
lines ... | python | def _update_pysam_files(cf, destdir):
'''update pysam files applying redirection of ouput'''
basename = os.path.basename(destdir)
for filename in cf:
if not filename:
continue
dest = filename + ".pysam.c"
with open(filename, encoding="utf-8") as infile:
lines ... | [
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232,307 | pysam-developers/pysam | pysam/__init__.py | get_include | def get_include():
'''return a list of include directories.'''
dirname = os.path.abspath(os.path.join(os.path.dirname(__file__)))
#
# Header files may be stored in different relative locations
# depending on installation mode (e.g., `python setup.py install`,
# `python setup.py develop`. The fi... | python | def get_include():
'''return a list of include directories.'''
dirname = os.path.abspath(os.path.join(os.path.dirname(__file__)))
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232,308 | pysam-developers/pysam | pysam/__init__.py | get_libraries | def get_libraries():
'''return a list of libraries to link against.'''
# Note that this list does not include libcsamtools.so as there are
# numerous name conflicts with libchtslib.so.
dirname = os.path.abspath(os.path.join(os.path.dirname(__file__)))
pysam_libs = ['libctabixproxies',
... | python | def get_libraries():
'''return a list of libraries to link against.'''
# Note that this list does not include libcsamtools.so as there are
# numerous name conflicts with libchtslib.so.
dirname = os.path.abspath(os.path.join(os.path.dirname(__file__)))
pysam_libs = ['libctabixproxies',
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232,309 | nerdvegas/rez | src/rez/vendor/pygraph/classes/digraph.py | digraph.has_edge | def has_edge(self, edge):
"""
Return whether an edge exists.
@type edge: tuple
@param edge: Edge.
@rtype: boolean
@return: Truth-value for edge existence.
"""
u, v = edge
return (u, v) in self.edge_properties | python | def has_edge(self, edge):
"""
Return whether an edge exists.
@type edge: tuple
@param edge: Edge.
@rtype: boolean
@return: Truth-value for edge existence.
"""
u, v = edge
return (u, v) in self.edge_properties | [
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232,310 | nerdvegas/rez | src/rez/package_serialise.py | dump_package_data | def dump_package_data(data, buf, format_=FileFormat.py, skip_attributes=None):
"""Write package data to `buf`.
Args:
data (dict): Data source - must conform to `package_serialise_schema`.
buf (file-like object): Destination stream.
format_ (`FileFormat`): Format to dump data in.
... | python | def dump_package_data(data, buf, format_=FileFormat.py, skip_attributes=None):
"""Write package data to `buf`.
Args:
data (dict): Data source - must conform to `package_serialise_schema`.
buf (file-like object): Destination stream.
format_ (`FileFormat`): Format to dump data in.
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232,311 | nerdvegas/rez | src/rez/vendor/distlib/_backport/sysconfig.py | get_config_vars | def get_config_vars(*args):
"""With no arguments, return a dictionary of all configuration
variables relevant for the current platform.
On Unix, this means every variable defined in Python's installed Makefile;
On Windows and Mac OS it's a much smaller set.
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"""With no arguments, return a dictionary of all configuration
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On Unix, this means every variable defined in Python's installed Makefile;
On Windows and Mac OS it's a much smaller set.
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232,312 | nerdvegas/rez | src/support/package_utils/set_authors.py | set_authors | def set_authors(data):
"""Add 'authors' attribute based on repo contributions
"""
if "authors" in data:
return
shfile = os.path.join(os.path.dirname(__file__), "get_committers.sh")
p = subprocess.Popen(["bash", shfile], stdout=subprocess.PIPE)
out, _ = p.communicate()
if p.returnco... | python | def set_authors(data):
"""Add 'authors' attribute based on repo contributions
"""
if "authors" in data:
return
shfile = os.path.join(os.path.dirname(__file__), "get_committers.sh")
p = subprocess.Popen(["bash", shfile], stdout=subprocess.PIPE)
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232,313 | nerdvegas/rez | src/rez/package_maker__.py | make_package | def make_package(name, path, make_base=None, make_root=None, skip_existing=True,
warn_on_skip=True):
"""Make and install a package.
Example:
>>> def make_root(variant, path):
>>> os.symlink("/foo_payload/misc/python27", "ext")
>>>
>>> with make_package('foo... | python | def make_package(name, path, make_base=None, make_root=None, skip_existing=True,
warn_on_skip=True):
"""Make and install a package.
Example:
>>> def make_root(variant, path):
>>> os.symlink("/foo_payload/misc/python27", "ext")
>>>
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232,314 | nerdvegas/rez | src/rez/package_maker__.py | PackageMaker.get_package | def get_package(self):
"""Create the analogous package.
Returns:
`Package` object.
"""
# get and validate package data
package_data = self._get_data()
package_data = package_schema.validate(package_data)
# check compatibility with rez version
... | python | def get_package(self):
"""Create the analogous package.
Returns:
`Package` object.
"""
# get and validate package data
package_data = self._get_data()
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# check compatibility with rez version
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232,315 | nerdvegas/rez | src/rez/vendor/pyparsing/pyparsing.py | getTokensEndLoc | def getTokensEndLoc():
"""Method to be called from within a parse action to determine the end
location of the parsed tokens."""
import inspect
fstack = inspect.stack()
try:
# search up the stack (through intervening argument normalizers) for correct calling routine
for f in... | python | def getTokensEndLoc():
"""Method to be called from within a parse action to determine the end
location of the parsed tokens."""
import inspect
fstack = inspect.stack()
try:
# search up the stack (through intervening argument normalizers) for correct calling routine
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232,316 | nerdvegas/rez | src/rez/utils/schema.py | schema_keys | def schema_keys(schema):
"""Get the string values of keys in a dict-based schema.
Non-string keys are ignored.
Returns:
Set of string keys of a schema which is in the form (eg):
schema = Schema({Required("foo"): int,
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"""
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"""Get the string values of keys in a dict-based schema.
Non-string keys are ignored.
Returns:
Set of string keys of a schema which is in the form (eg):
schema = Schema({Required("foo"): int,
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232,317 | nerdvegas/rez | src/rez/utils/schema.py | dict_to_schema | def dict_to_schema(schema_dict, required, allow_custom_keys=True, modifier=None):
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Args:
required (bool): Whether to make schema keys optional or required.
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232,318 | nerdvegas/rez | src/rezgui/widgets/ContextTableWidget.py | ContextTableWidget.enter_diff_mode | def enter_diff_mode(self, context_model=None):
"""Enter diff mode.
Args:
context_model (`ContextModel`): Context to diff against. If None, a
copy of the current context is used.
"""
assert not self.diff_mode
self.diff_mode = True
if context_model... | python | def enter_diff_mode(self, context_model=None):
"""Enter diff mode.
Args:
context_model (`ContextModel`): Context to diff against. If None, a
copy of the current context is used.
"""
assert not self.diff_mode
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232,319 | nerdvegas/rez | src/rezgui/widgets/ContextTableWidget.py | ContextTableWidget.leave_diff_mode | def leave_diff_mode(self):
"""Leave diff mode."""
assert self.diff_mode
self.diff_mode = False
self.diff_context_model = None
self.diff_from_source = False
self.setColumnCount(2)
self.refresh() | python | def leave_diff_mode(self):
"""Leave diff mode."""
assert self.diff_mode
self.diff_mode = False
self.diff_context_model = None
self.diff_from_source = False
self.setColumnCount(2)
self.refresh() | [
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232,320 | nerdvegas/rez | src/rezgui/widgets/ContextTableWidget.py | ContextTableWidget.get_title | def get_title(self):
"""Returns a string suitable for titling a window containing this table."""
def _title(context_model):
context = context_model.context()
if context is None:
return "new context*"
title = os.path.basename(context.load_path) if conte... | python | def get_title(self):
"""Returns a string suitable for titling a window containing this table."""
def _title(context_model):
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if context is None:
return "new context*"
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232,321 | nerdvegas/rez | src/rez/utils/colorize.py | _color_level | def _color_level(str_, level):
""" Return the string wrapped with the appropriate styling for the message
level. The styling will be determined based on the rez configuration.
Args:
str_ (str): The string to be wrapped.
level (str): The message level. Should be one of 'critical', 'error',
... | python | def _color_level(str_, level):
""" Return the string wrapped with the appropriate styling for the message
level. The styling will be determined based on the rez configuration.
Args:
str_ (str): The string to be wrapped.
level (str): The message level. Should be one of 'critical', 'error',
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232,322 | nerdvegas/rez | src/rez/utils/colorize.py | _color | def _color(str_, fore_color=None, back_color=None, styles=None):
""" Return the string wrapped with the appropriate styling escape sequences.
Args:
str_ (str): The string to be wrapped.
fore_color (str, optional): Any foreground color supported by the
`Colorama`_ module.
back_color (s... | python | def _color(str_, fore_color=None, back_color=None, styles=None):
""" Return the string wrapped with the appropriate styling escape sequences.
Args:
str_ (str): The string to be wrapped.
fore_color (str, optional): Any foreground color supported by the
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232,323 | nerdvegas/rez | src/rez/utils/sourcecode.py | late | def late():
"""Used by functions in package.py that are evaluated lazily.
The term 'late' refers to the fact these package attributes are evaluated
late, ie when the attribute is queried for the first time.
If you want to implement a package.py attribute as a function, you MUST use
this decorator ... | python | def late():
"""Used by functions in package.py that are evaluated lazily.
The term 'late' refers to the fact these package attributes are evaluated
late, ie when the attribute is queried for the first time.
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232,324 | nerdvegas/rez | src/rez/utils/sourcecode.py | include | def include(module_name, *module_names):
"""Used by functions in package.py to have access to named modules.
See the 'package_definition_python_path' config setting for more info.
"""
def decorated(fn):
_add_decorator(fn, "include", nargs=[module_name] + list(module_names))
return fn
... | python | def include(module_name, *module_names):
"""Used by functions in package.py to have access to named modules.
See the 'package_definition_python_path' config setting for more info.
"""
def decorated(fn):
_add_decorator(fn, "include", nargs=[module_name] + list(module_names))
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232,325 | nerdvegas/rez | src/rez/packages_.py | iter_package_families | def iter_package_families(paths=None):
"""Iterate over package families, in no particular order.
Note that multiple package families with the same name can be returned.
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families.
Args:
paths (list of str, optional)... | python | def iter_package_families(paths=None):
"""Iterate over package families, in no particular order.
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232,326 | nerdvegas/rez | src/rez/packages_.py | iter_packages | def iter_packages(name, range_=None, paths=None):
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232,327 | nerdvegas/rez | src/rez/packages_.py | get_package | def get_package(name, version, paths=None):
"""Get an exact version of a package.
Args:
name (str): Name of the package, eg 'maya'.
version (Version or str): Version of the package, eg '1.0.0'
paths (list of str, optional): paths to search for package, defaults
to `config.pa... | python | def get_package(name, version, paths=None):
"""Get an exact version of a package.
Args:
name (str): Name of the package, eg 'maya'.
version (Version or str): Version of the package, eg '1.0.0'
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232,328 | nerdvegas/rez | src/rez/packages_.py | get_package_from_string | def get_package_from_string(txt, paths=None):
"""Get a package given a string.
Args:
txt (str): String such as 'foo', 'bah-1.3'.
paths (list of str, optional): paths to search for package, defaults
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Returns:
`Package` instance, or None if no pa... | python | def get_package_from_string(txt, paths=None):
"""Get a package given a string.
Args:
txt (str): String such as 'foo', 'bah-1.3'.
paths (list of str, optional): paths to search for package, defaults
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232,329 | nerdvegas/rez | src/rez/packages_.py | get_developer_package | def get_developer_package(path, format=None):
"""Create a developer package.
Args:
path (str): Path to dir containing package definition file.
format (str): Package definition file format, detected if None.
Returns:
`DeveloperPackage`.
"""
from rez.developer_package import ... | python | def get_developer_package(path, format=None):
"""Create a developer package.
Args:
path (str): Path to dir containing package definition file.
format (str): Package definition file format, detected if None.
Returns:
`DeveloperPackage`.
"""
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232,330 | nerdvegas/rez | src/rez/packages_.py | create_package | def create_package(name, data, package_cls=None):
"""Create a package given package data.
Args:
name (str): Package name.
data (dict): Package data. Must conform to `package_maker.package_schema`.
Returns:
`Package` object.
"""
from rez.package_maker__ import PackageMaker
... | python | def create_package(name, data, package_cls=None):
"""Create a package given package data.
Args:
name (str): Package name.
data (dict): Package data. Must conform to `package_maker.package_schema`.
Returns:
`Package` object.
"""
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232,331 | nerdvegas/rez | src/rez/packages_.py | get_last_release_time | def get_last_release_time(name, paths=None):
"""Returns the most recent time this package was released.
Note that releasing a variant into an already-released package is also
considered a package release.
Returns:
int: Epoch time of last package release, or zero if this cannot be
deter... | python | def get_last_release_time(name, paths=None):
"""Returns the most recent time this package was released.
Note that releasing a variant into an already-released package is also
considered a package release.
Returns:
int: Epoch time of last package release, or zero if this cannot be
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232,332 | nerdvegas/rez | src/rez/packages_.py | get_completions | def get_completions(prefix, paths=None, family_only=False):
"""Get autocompletion options given a prefix string.
Example:
>>> get_completions("may")
set(["maya", "maya_utils"])
>>> get_completions("maya-")
set(["maya-2013.1", "maya-2015.0.sp1"])
Args:
prefix (str):... | python | def get_completions(prefix, paths=None, family_only=False):
"""Get autocompletion options given a prefix string.
Example:
>>> get_completions("may")
set(["maya", "maya_utils"])
>>> get_completions("maya-")
set(["maya-2013.1", "maya-2015.0.sp1"])
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prefix (str):... | [
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232,333 | nerdvegas/rez | src/rez/packages_.py | PackageFamily.iter_packages | def iter_packages(self):
"""Iterate over the packages within this family, in no particular order.
Returns:
`Package` iterator.
"""
for package in self.repository.iter_packages(self.resource):
yield Package(package) | python | def iter_packages(self):
"""Iterate over the packages within this family, in no particular order.
Returns:
`Package` iterator.
"""
for package in self.repository.iter_packages(self.resource):
yield Package(package) | [
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232,334 | nerdvegas/rez | src/rez/packages_.py | PackageBaseResourceWrapper.is_local | def is_local(self):
"""Returns True if the package is in the local package repository"""
local_repo = package_repository_manager.get_repository(
self.config.local_packages_path)
return (self.resource._repository.uid == local_repo.uid) | python | def is_local(self):
"""Returns True if the package is in the local package repository"""
local_repo = package_repository_manager.get_repository(
self.config.local_packages_path)
return (self.resource._repository.uid == local_repo.uid) | [
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232,335 | nerdvegas/rez | src/rez/packages_.py | PackageBaseResourceWrapper.print_info | def print_info(self, buf=None, format_=FileFormat.yaml,
skip_attributes=None, include_release=False):
"""Print the contents of the package.
Args:
buf (file-like object): Stream to write to.
format_ (`FileFormat`): Format to write in.
skip_attribute... | python | def print_info(self, buf=None, format_=FileFormat.yaml,
skip_attributes=None, include_release=False):
"""Print the contents of the package.
Args:
buf (file-like object): Stream to write to.
format_ (`FileFormat`): Format to write in.
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232,336 | nerdvegas/rez | src/rez/packages_.py | Package.qualified_name | def qualified_name(self):
"""Get the qualified name of the package.
Returns:
str: Name of the package with version, eg "maya-2016.1".
"""
o = VersionedObject.construct(self.name, self.version)
return str(o) | python | def qualified_name(self):
"""Get the qualified name of the package.
Returns:
str: Name of the package with version, eg "maya-2016.1".
"""
o = VersionedObject.construct(self.name, self.version)
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232,337 | nerdvegas/rez | src/rez/packages_.py | Package.parent | def parent(self):
"""Get the parent package family.
Returns:
`PackageFamily`.
"""
family = self.repository.get_parent_package_family(self.resource)
return PackageFamily(family) if family else None | python | def parent(self):
"""Get the parent package family.
Returns:
`PackageFamily`.
"""
family = self.repository.get_parent_package_family(self.resource)
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232,338 | nerdvegas/rez | src/rez/packages_.py | Package.iter_variants | def iter_variants(self):
"""Iterate over the variants within this package, in index order.
Returns:
`Variant` iterator.
"""
for variant in self.repository.iter_variants(self.resource):
yield Variant(variant, context=self.context, parent=self) | python | def iter_variants(self):
"""Iterate over the variants within this package, in index order.
Returns:
`Variant` iterator.
"""
for variant in self.repository.iter_variants(self.resource):
yield Variant(variant, context=self.context, parent=self) | [
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232,339 | nerdvegas/rez | src/rez/packages_.py | Package.get_variant | def get_variant(self, index=None):
"""Get the variant with the associated index.
Returns:
`Variant` object, or None if no variant with the given index exists.
"""
for variant in self.iter_variants():
if variant.index == index:
return variant | python | def get_variant(self, index=None):
"""Get the variant with the associated index.
Returns:
`Variant` object, or None if no variant with the given index exists.
"""
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232,340 | nerdvegas/rez | src/rez/packages_.py | Variant.qualified_name | def qualified_name(self):
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Returns:
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"""
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"""Get the qualified name of the variant.
Returns:
str: Name of the variant with version and index, eg "maya-2016.1[1]".
"""
idxstr = '' if self.index is None else str(self.index)
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232,341 | nerdvegas/rez | src/rez/packages_.py | Variant.parent | def parent(self):
"""Get the parent package.
Returns:
`Package`.
"""
if self._parent is not None:
return self._parent
try:
package = self.repository.get_parent_package(self.resource)
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"""Get the parent package.
Returns:
`Package`.
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if self._parent is not None:
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232,342 | nerdvegas/rez | src/rez/packages_.py | Variant.get_requires | def get_requires(self, build_requires=False, private_build_requires=False):
"""Get the requirements of the variant.
Args:
build_requires (bool): If True, include build requirements.
private_build_requires (bool): If True, include private build
requirements.
... | python | def get_requires(self, build_requires=False, private_build_requires=False):
"""Get the requirements of the variant.
Args:
build_requires (bool): If True, include build requirements.
private_build_requires (bool): If True, include private build
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232,343 | nerdvegas/rez | src/rez/packages_.py | Variant.install | def install(self, path, dry_run=False, overrides=None):
"""Install this variant into another package repository.
If the package already exists, this variant will be correctly merged
into the package. If the variant already exists in this package, the
existing variant is returned.
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232,344 | nerdvegas/rez | src/rez/serialise.py | open_file_for_write | def open_file_for_write(filepath, mode=None):
"""Writes both to given filepath, and tmpdir location.
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"""Writes both to given filepath, and tmpdir location.
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232,345 | nerdvegas/rez | src/rez/serialise.py | load_py | def load_py(stream, filepath=None):
"""Load python-formatted data from a stream.
Args:
stream (file-like object).
Returns:
dict.
"""
with add_sys_paths(config.package_definition_build_python_paths):
return _load_py(stream, filepath=filepath) | python | def load_py(stream, filepath=None):
"""Load python-formatted data from a stream.
Args:
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Returns:
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232,346 | nerdvegas/rez | src/rez/serialise.py | process_python_objects | def process_python_objects(data, filepath=None):
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232,347 | nerdvegas/rez | src/rez/serialise.py | load_yaml | def load_yaml(stream, **kwargs):
"""Load yaml-formatted data from a stream.
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"""
# if there's an error parsing the yaml, and you pass yaml.load a string,
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232,348 | nerdvegas/rez | src/rez/vendor/amqp/connection.py | Connection._blocked | def _blocked(self, args):
"""RabbitMQ Extension."""
reason = args.read_shortstr()
if self.on_blocked:
return self.on_blocked(reason) | python | def _blocked(self, args):
"""RabbitMQ Extension."""
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232,349 | nerdvegas/rez | src/rez/vendor/amqp/connection.py | Connection._x_secure_ok | def _x_secure_ok(self, response):
"""Security mechanism response
This method attempts to authenticate, passing a block of SASL
data for the security mechanism at the server side.
PARAMETERS:
response: longstr
security response data
A block ... | python | def _x_secure_ok(self, response):
"""Security mechanism response
This method attempts to authenticate, passing a block of SASL
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PARAMETERS:
response: longstr
security response data
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232,350 | nerdvegas/rez | src/rez/vendor/amqp/connection.py | Connection._x_start_ok | def _x_start_ok(self, client_properties, mechanism, response, locale):
"""Select security mechanism and locale
This method selects a SASL security mechanism. ASL uses SASL
(RFC2222) to negotiate authentication and encryption.
PARAMETERS:
client_properties: table
... | python | def _x_start_ok(self, client_properties, mechanism, response, locale):
"""Select security mechanism and locale
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(RFC2222) to negotiate authentication and encryption.
PARAMETERS:
client_properties: table
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232,351 | nerdvegas/rez | src/rez/vendor/amqp/connection.py | Connection._tune | def _tune(self, args):
"""Propose connection tuning parameters
This method proposes a set of connection configuration values
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PARAMETERS:
channel_max: short
proposed maximum channels
... | python | def _tune(self, args):
"""Propose connection tuning parameters
This method proposes a set of connection configuration values
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PARAMETERS:
channel_max: short
proposed maximum channels
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232,352 | nerdvegas/rez | src/rez/vendor/amqp/connection.py | Connection.heartbeat_tick | def heartbeat_tick(self, rate=2):
"""Send heartbeat packets, if necessary, and fail if none have been
received recently. This should be called frequently, on the order of
once per second.
:keyword rate: Ignored
"""
if not self.heartbeat:
return
# tr... | python | def heartbeat_tick(self, rate=2):
"""Send heartbeat packets, if necessary, and fail if none have been
received recently. This should be called frequently, on the order of
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:keyword rate: Ignored
"""
if not self.heartbeat:
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232,353 | nerdvegas/rez | src/rez/vendor/amqp/connection.py | Connection._x_tune_ok | def _x_tune_ok(self, channel_max, frame_max, heartbeat):
"""Negotiate connection tuning parameters
This method sends the client's connection tuning parameters to
the server. Certain fields are negotiated, others provide
capability information.
PARAMETERS:
channel_ma... | python | def _x_tune_ok(self, channel_max, frame_max, heartbeat):
"""Negotiate connection tuning parameters
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PARAMETERS:
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232,354 | nerdvegas/rez | src/rez/status.py | Status.parent_suite | def parent_suite(self):
"""Get the current parent suite.
A parent suite exists when a context within a suite is active. That is,
during execution of a tool within a suite, or after a user has entered
an interactive shell in a suite context, for example via the command-
line synt... | python | def parent_suite(self):
"""Get the current parent suite.
A parent suite exists when a context within a suite is active. That is,
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232,355 | nerdvegas/rez | src/rez/status.py | Status.print_info | def print_info(self, obj=None, buf=sys.stdout):
"""Print a status message about the given object.
If an object is not provided, status info is shown about the current
environment - what the active context is if any, and what suites are
visible.
Args:
obj (str): Stri... | python | def print_info(self, obj=None, buf=sys.stdout):
"""Print a status message about the given object.
If an object is not provided, status info is shown about the current
environment - what the active context is if any, and what suites are
visible.
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obj (str): Stri... | [
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232,356 | nerdvegas/rez | src/rez/status.py | Status.print_tools | def print_tools(self, pattern=None, buf=sys.stdout):
"""Print a list of visible tools.
Args:
pattern (str): Only list tools that match this glob pattern.
"""
seen = set()
rows = []
context = self.context
if context:
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"""Print a list of visible tools.
Args:
pattern (str): Only list tools that match this glob pattern.
"""
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232,357 | nerdvegas/rez | src/rez/developer_package.py | DeveloperPackage.from_path | def from_path(cls, path, format=None):
"""Load a developer package.
A developer package may for example be a package.yaml or package.py in a
user's source directory.
Args:
path: Directory containing the package definition file, or file
path for the package f... | python | def from_path(cls, path, format=None):
"""Load a developer package.
A developer package may for example be a package.yaml or package.py in a
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Args:
path: Directory containing the package definition file, or file
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232,358 | nerdvegas/rez | src/rez/vendor/yaml/__init__.py | dump_all | def dump_all(documents, stream=None, Dumper=Dumper,
default_style=None, default_flow_style=None,
canonical=None, indent=None, width=None,
allow_unicode=None, line_break=None,
encoding='utf-8', explicit_start=None, explicit_end=None,
version=None, tags=None):
"""
Serialize... | python | def dump_all(documents, stream=None, Dumper=Dumper,
default_style=None, default_flow_style=None,
canonical=None, indent=None, width=None,
allow_unicode=None, line_break=None,
encoding='utf-8', explicit_start=None, explicit_end=None,
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232,359 | nerdvegas/rez | src/rezgui/objects/ProcessTrackerThread.py | ProcessTrackerThread.running_instances | def running_instances(self, context, process_name):
"""Get a list of running instances.
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context (`ResolvedContext`): Context the process is running in.
process_name (str): Name of the process.
Returns:
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"""Get a list of running instances.
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context (`ResolvedContext`): Context the process is running in.
process_name (str): Name of the process.
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232,360 | nerdvegas/rez | src/rez/rex.py | ActionManager.get_public_methods | def get_public_methods(self):
"""
return a list of methods on this class which should be exposed in the rex
API.
"""
return self.get_action_methods() + [
('getenv', self.getenv),
('expandvars', self.expandvars),
('defined', self.defined),
... | python | def get_public_methods(self):
"""
return a list of methods on this class which should be exposed in the rex
API.
"""
return self.get_action_methods() + [
('getenv', self.getenv),
('expandvars', self.expandvars),
('defined', self.defined),
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232,361 | nerdvegas/rez | src/rez/rex.py | Python.apply_environ | def apply_environ(self):
"""Apply changes to target environ.
"""
if self.manager is None:
raise RezSystemError("You must call 'set_manager' on a Python rex "
"interpreter before using it.")
self.target_environ.update(self.manager.environ) | python | def apply_environ(self):
"""Apply changes to target environ.
"""
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raise RezSystemError("You must call 'set_manager' on a Python rex "
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232,362 | nerdvegas/rez | src/rez/rex.py | EscapedString.formatted | def formatted(self, func):
"""Return the string with non-literal parts formatted.
Args:
func (callable): Callable that translates a string into a
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Returns:
`EscapedString` object.
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func (callable): Callable that translates a string into a
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232,363 | nerdvegas/rez | src/rez/rex.py | RexExecutor.execute_code | def execute_code(self, code, filename=None, isolate=False):
"""Execute code within the execution context.
Args:
code (str or SourceCode): Rex code to execute.
filename (str): Filename to report if there are syntax errors.
isolate (bool): If True, do not affect `self.... | python | def execute_code(self, code, filename=None, isolate=False):
"""Execute code within the execution context.
Args:
code (str or SourceCode): Rex code to execute.
filename (str): Filename to report if there are syntax errors.
isolate (bool): If True, do not affect `self.... | [
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232,364 | nerdvegas/rez | src/rez/rex.py | RexExecutor.execute_function | def execute_function(self, func, *nargs, **kwargs):
"""
Execute a function object within the execution context.
@returns The result of the function call.
"""
# makes a copy of the func
import types
fn = types.FunctionType(func.func_code,
... | python | def execute_function(self, func, *nargs, **kwargs):
"""
Execute a function object within the execution context.
@returns The result of the function call.
"""
# makes a copy of the func
import types
fn = types.FunctionType(func.func_code,
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232,365 | nerdvegas/rez | src/rez/rex.py | RexExecutor.get_output | def get_output(self, style=OutputStyle.file):
"""Returns the result of all previous calls to execute_code."""
return self.manager.get_output(style=style) | python | def get_output(self, style=OutputStyle.file):
"""Returns the result of all previous calls to execute_code."""
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232,366 | nerdvegas/rez | src/rez/vendor/pygraph/algorithms/filters/find.py | find.configure | def configure(self, graph, spanning_tree):
"""
Configure the filter.
@type graph: graph
@param graph: Graph.
@type spanning_tree: dictionary
@param spanning_tree: Spanning tree.
"""
self.graph = graph
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"""
Configure the filter.
@type graph: graph
@param graph: Graph.
@type spanning_tree: dictionary
@param spanning_tree: Spanning tree.
"""
self.graph = graph
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232,367 | nerdvegas/rez | src/rez/package_filter.py | PackageFilterBase.iter_packages | def iter_packages(self, name, range_=None, paths=None):
"""Same as iter_packages in packages.py, but also applies this filter.
Args:
name (str): Name of the package, eg 'maya'.
range_ (VersionRange or str): If provided, limits the versions returned
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"""Same as iter_packages in packages.py, but also applies this filter.
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name (str): Name of the package, eg 'maya'.
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232,368 | nerdvegas/rez | src/rez/package_filter.py | PackageFilter.copy | def copy(self):
"""Return a shallow copy of the filter.
Adding rules to the copy will not alter the source.
"""
other = PackageFilter.__new__(PackageFilter)
other._excludes = self._excludes.copy()
other._includes = self._includes.copy()
return other | python | def copy(self):
"""Return a shallow copy of the filter.
Adding rules to the copy will not alter the source.
"""
other = PackageFilter.__new__(PackageFilter)
other._excludes = self._excludes.copy()
other._includes = self._includes.copy()
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232,369 | nerdvegas/rez | src/rez/package_filter.py | PackageFilter.cost | def cost(self):
"""Get the approximate cost of this filter.
Cost is the total cost of the exclusion rules in this filter. The cost
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Returns:
float: The approximate cost of the filter.
"""
total = 0.0
for fa... | python | def cost(self):
"""Get the approximate cost of this filter.
Cost is the total cost of the exclusion rules in this filter. The cost
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Returns:
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232,370 | nerdvegas/rez | src/rez/package_filter.py | PackageFilterList.add_filter | def add_filter(self, package_filter):
"""Add a filter to the list.
Args:
package_filter (`PackageFilter`): Filter to add.
"""
filters = self.filters + [package_filter]
self.filters = sorted(filters, key=lambda x: x.cost) | python | def add_filter(self, package_filter):
"""Add a filter to the list.
Args:
package_filter (`PackageFilter`): Filter to add.
"""
filters = self.filters + [package_filter]
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232,371 | nerdvegas/rez | src/rez/package_filter.py | PackageFilterList.copy | def copy(self):
"""Return a copy of the filter list.
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232,372 | nerdvegas/rez | src/rez/package_filter.py | Rule.parse_rule | def parse_rule(cls, txt):
"""Parse a rule from a string.
See rezconfig.package_filter for an overview of valid strings.
Args:
txt (str): String to parse.
Returns:
`Rule` instance.
"""
types = {"glob": GlobRule,
"regex": RegexRul... | python | def parse_rule(cls, txt):
"""Parse a rule from a string.
See rezconfig.package_filter for an overview of valid strings.
Args:
txt (str): String to parse.
Returns:
`Rule` instance.
"""
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232,373 | nerdvegas/rez | src/rez/vendor/amqp/serialization.py | AMQPReader.read_bit | def read_bit(self):
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"""Read a single boolean value."""
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232,374 | nerdvegas/rez | src/rez/vendor/amqp/serialization.py | AMQPReader.read_long | def read_long(self):
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232,375 | nerdvegas/rez | src/rez/vendor/amqp/serialization.py | AMQPReader.read_longlong | def read_longlong(self):
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232,376 | nerdvegas/rez | src/rez/vendor/amqp/serialization.py | AMQPReader.read_float | def read_float(self):
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"""Read float value."""
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232,377 | nerdvegas/rez | src/rez/vendor/amqp/serialization.py | AMQPReader.read_shortstr | def read_shortstr(self):
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232,378 | nerdvegas/rez | src/rez/vendor/amqp/serialization.py | GenericContent._load_properties | def _load_properties(self, raw_bytes):
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232,379 | nerdvegas/rez | src/rez/util.py | create_executable_script | def create_executable_script(filepath, body, program=None):
"""Create an executable script.
Args:
filepath (str): File to create.
body (str or callable): Contents of the script. If a callable, its code
is used as the script body.
program (str): Name of program to launch the ... | python | def create_executable_script(filepath, body, program=None):
"""Create an executable script.
Args:
filepath (str): File to create.
body (str or callable): Contents of the script. If a callable, its code
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232,380 | nerdvegas/rez | src/rez/util.py | create_forwarding_script | def create_forwarding_script(filepath, module, func_name, *nargs, **kwargs):
"""Create a 'forwarding' script.
A forwarding script is one that executes some arbitrary Rez function. This
is used internally by Rez to dynamically create a script that uses Rez,
even though the parent environment may not be ... | python | def create_forwarding_script(filepath, module, func_name, *nargs, **kwargs):
"""Create a 'forwarding' script.
A forwarding script is one that executes some arbitrary Rez function. This
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232,381 | nerdvegas/rez | src/rez/util.py | dedup | def dedup(seq):
"""Remove duplicates from a list while keeping order."""
seen = set()
for item in seq:
if item not in seen:
seen.add(item)
yield item | python | def dedup(seq):
"""Remove duplicates from a list while keeping order."""
seen = set()
for item in seq:
if item not in seen:
seen.add(item)
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232,382 | nerdvegas/rez | src/rez/util.py | find_last_sublist | def find_last_sublist(list_, sublist):
"""Given a list, find the last occurance of a sublist within it.
Returns:
Index where the sublist starts, or None if there is no match.
"""
for i in reversed(range(len(list_) - len(sublist) + 1)):
if list_[i] == sublist[0] and list_[i:i + len(subli... | python | def find_last_sublist(list_, sublist):
"""Given a list, find the last occurance of a sublist within it.
Returns:
Index where the sublist starts, or None if there is no match.
"""
for i in reversed(range(len(list_) - len(sublist) + 1)):
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232,383 | nerdvegas/rez | src/rez/package_help.py | PackageHelp.open | def open(self, section_index=0):
"""Launch a help section."""
uri = self._sections[section_index][1]
if len(uri.split()) == 1:
self._open_url(uri)
else:
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... | python | def open(self, section_index=0):
"""Launch a help section."""
uri = self._sections[section_index][1]
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self._open_url(uri)
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232,384 | nerdvegas/rez | src/rez/package_help.py | PackageHelp.print_info | def print_info(self, buf=None):
"""Print help sections."""
buf = buf or sys.stdout
print >> buf, "Sections:"
for i, section in enumerate(self._sections):
print >> buf, " %s:\t%s (%s)" % (i + 1, section[0], section[1]) | python | def print_info(self, buf=None):
"""Print help sections."""
buf = buf or sys.stdout
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232,385 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.set_servers | def set_servers(self, servers):
"""
Set the pool of servers used by this client.
@param servers: an array of servers.
Servers can be passed in two forms:
1. Strings of the form C{"host:port"}, which implies a default weight of 1.
2. Tuples of the form C{("host:po... | python | def set_servers(self, servers):
"""
Set the pool of servers used by this client.
@param servers: an array of servers.
Servers can be passed in two forms:
1. Strings of the form C{"host:port"}, which implies a default weight of 1.
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232,386 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.get_stats | def get_stats(self, stat_args = None):
'''Get statistics from each of the servers.
@param stat_args: Additional arguments to pass to the memcache
"stats" command.
@return: A list of tuples ( server_identifier, stats_dictionary ).
The dictionary contains a number of name... | python | def get_stats(self, stat_args = None):
'''Get statistics from each of the servers.
@param stat_args: Additional arguments to pass to the memcache
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@return: A list of tuples ( server_identifier, stats_dictionary ).
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232,387 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.delete_multi | def delete_multi(self, keys, time=0, key_prefix=''):
'''
Delete multiple keys in the memcache doing just one query.
>>> notset_keys = mc.set_multi({'key1' : 'val1', 'key2' : 'val2'})
>>> mc.get_multi(['key1', 'key2']) == {'key1' : 'val1', 'key2' : 'val2'}
1
>>> mc.delete... | python | def delete_multi(self, keys, time=0, key_prefix=''):
'''
Delete multiple keys in the memcache doing just one query.
>>> notset_keys = mc.set_multi({'key1' : 'val1', 'key2' : 'val2'})
>>> mc.get_multi(['key1', 'key2']) == {'key1' : 'val1', 'key2' : 'val2'}
1
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232,388 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.delete | def delete(self, key, time=0):
'''Deletes a key from the memcache.
@return: Nonzero on success.
@param time: number of seconds any subsequent set / update commands
should fail. Defaults to None for no delay.
@rtype: int
'''
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self.... | python | def delete(self, key, time=0):
'''Deletes a key from the memcache.
@return: Nonzero on success.
@param time: number of seconds any subsequent set / update commands
should fail. Defaults to None for no delay.
@rtype: int
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232,389 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.add | def add(self, key, val, time = 0, min_compress_len = 0):
'''
Add new key with value.
Like L{set}, but only stores in memcache if the key doesn't already exist.
@return: Nonzero on success.
@rtype: int
'''
return self._set("add", key, val, time, min_compress_len) | python | def add(self, key, val, time = 0, min_compress_len = 0):
'''
Add new key with value.
Like L{set}, but only stores in memcache if the key doesn't already exist.
@return: Nonzero on success.
@rtype: int
'''
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232,390 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.append | def append(self, key, val, time=0, min_compress_len=0):
'''Append the value to the end of the existing key's value.
Only stores in memcache if key already exists.
Also see L{prepend}.
@return: Nonzero on success.
@rtype: int
'''
return self._set("append", key, v... | python | def append(self, key, val, time=0, min_compress_len=0):
'''Append the value to the end of the existing key's value.
Only stores in memcache if key already exists.
Also see L{prepend}.
@return: Nonzero on success.
@rtype: int
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Also see L{prepend}.
@return: Nonzero on success.
@rtype: int | [
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232,391 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.prepend | def prepend(self, key, val, time=0, min_compress_len=0):
'''Prepend the value to the beginning of the existing key's value.
Only stores in memcache if key already exists.
Also see L{append}.
@return: Nonzero on success.
@rtype: int
'''
return self._set("prepend"... | python | def prepend(self, key, val, time=0, min_compress_len=0):
'''Prepend the value to the beginning of the existing key's value.
Only stores in memcache if key already exists.
Also see L{append}.
@return: Nonzero on success.
@rtype: int
'''
return self._set("prepend"... | [
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232,392 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.replace | def replace(self, key, val, time=0, min_compress_len=0):
'''Replace existing key with value.
Like L{set}, but only stores in memcache if the key already exists.
The opposite of L{add}.
@return: Nonzero on success.
@rtype: int
'''
return self._set("replace", key,... | python | def replace(self, key, val, time=0, min_compress_len=0):
'''Replace existing key with value.
Like L{set}, but only stores in memcache if the key already exists.
The opposite of L{add}.
@return: Nonzero on success.
@rtype: int
'''
return self._set("replace", key,... | [
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232,393 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.set | def set(self, key, val, time=0, min_compress_len=0):
'''Unconditionally sets a key to a given value in the memcache.
The C{key} can optionally be an tuple, with the first element
being the server hash value and the second being the key.
If you want to avoid making this module calculate ... | python | def set(self, key, val, time=0, min_compress_len=0):
'''Unconditionally sets a key to a given value in the memcache.
The C{key} can optionally be an tuple, with the first element
being the server hash value and the second being the key.
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232,394 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.set_multi | def set_multi(self, mapping, time=0, key_prefix='', min_compress_len=0):
'''
Sets multiple keys in the memcache doing just one query.
>>> notset_keys = mc.set_multi({'key1' : 'val1', 'key2' : 'val2'})
>>> mc.get_multi(['key1', 'key2']) == {'key1' : 'val1', 'key2' : 'val2'}
1
... | python | def set_multi(self, mapping, time=0, key_prefix='', min_compress_len=0):
'''
Sets multiple keys in the memcache doing just one query.
>>> notset_keys = mc.set_multi({'key1' : 'val1', 'key2' : 'val2'})
>>> mc.get_multi(['key1', 'key2']) == {'key1' : 'val1', 'key2' : 'val2'}
1
... | [
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>>> mc.get_multi(['key1', 'key2']) == {'key1' : 'val1', 'key2' : 'val2'}
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232,395 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | Client.get_multi | def get_multi(self, keys, key_prefix=''):
'''
Retrieves multiple keys from the memcache doing just one query.
>>> success = mc.set("foo", "bar")
>>> success = mc.set("baz", 42)
>>> mc.get_multi(["foo", "baz", "foobar"]) == {"foo": "bar", "baz": 42}
1
>>> mc.set_m... | python | def get_multi(self, keys, key_prefix=''):
'''
Retrieves multiple keys from the memcache doing just one query.
>>> success = mc.set("foo", "bar")
>>> success = mc.set("baz", 42)
>>> mc.get_multi(["foo", "baz", "foobar"]) == {"foo": "bar", "baz": 42}
1
>>> mc.set_m... | [
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>>> success = mc.set("baz", 42)
>>> mc.get_multi(["foo", "baz", "foobar"]) == {"foo": "bar", "baz": 42}
1
>>> mc.set_multi({'k1' : 1, 'k2' : 2}, key_prefix='pfx_') == []
1
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232,396 | nerdvegas/rez | src/rez/vendor/memcache/memcache.py | _Host.readline | def readline(self, raise_exception=False):
"""Read a line and return it. If "raise_exception" is set,
raise _ConnectionDeadError if the read fails, otherwise return
an empty string.
"""
buf = self.buffer
if self.socket:
recv = self.socket.recv
else:
... | python | def readline(self, raise_exception=False):
"""Read a line and return it. If "raise_exception" is set,
raise _ConnectionDeadError if the read fails, otherwise return
an empty string.
"""
buf = self.buffer
if self.socket:
recv = self.socket.recv
else:
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232,397 | nerdvegas/rez | src/rezplugins/package_repository/memory.py | MemoryPackageRepository.create_repository | def create_repository(cls, repository_data):
"""Create a standalone, in-memory repository.
Using this function bypasses the `package_repository_manager` singleton.
This is usually desired however, since in-memory repositories are for
temporarily storing programmatically created packages... | python | def create_repository(cls, repository_data):
"""Create a standalone, in-memory repository.
Using this function bypasses the `package_repository_manager` singleton.
This is usually desired however, since in-memory repositories are for
temporarily storing programmatically created packages... | [
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Using this function bypasses the `package_repository_manager` singleton.
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232,398 | nerdvegas/rez | src/build_utils/distlib/metadata.py | LegacyMetadata.read_file | def read_file(self, fileob):
"""Read the metadata values from a file object."""
msg = message_from_file(fileob)
self._fields['Metadata-Version'] = msg['metadata-version']
# When reading, get all the fields we can
for field in _ALL_FIELDS:
if field not in msg:
... | python | def read_file(self, fileob):
"""Read the metadata values from a file object."""
msg = message_from_file(fileob)
self._fields['Metadata-Version'] = msg['metadata-version']
# When reading, get all the fields we can
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232,399 | nerdvegas/rez | src/build_utils/distlib/metadata.py | LegacyMetadata.check | def check(self, strict=False):
"""Check if the metadata is compliant. If strict is True then raise if
no Name or Version are provided"""
self.set_metadata_version()
# XXX should check the versions (if the file was loaded)
missing, warnings = [], []
for attr in ('Name', ... | python | def check(self, strict=False):
"""Check if the metadata is compliant. If strict is True then raise if
no Name or Version are provided"""
self.set_metadata_version()
# XXX should check the versions (if the file was loaded)
missing, warnings = [], []
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