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SALib/SALib
src/SALib/sample/ff.py
cli_action
def cli_action(args): """Run sampling method Parameters ---------- args : argparse namespace """ problem = read_param_file(args.paramfile) param_values = sample(problem, seed=args.seed) np.savetxt(args.output, param_values, delimiter=args.delimiter, fmt='%.' + str(args.precision) + 'e')
python
def cli_action(args): """Run sampling method Parameters ---------- args : argparse namespace """ problem = read_param_file(args.paramfile) param_values = sample(problem, seed=args.seed) np.savetxt(args.output, param_values, delimiter=args.delimiter, fmt='%.' + str(args.precision) + 'e')
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Run sampling method Parameters ---------- args : argparse namespace
[ "Run", "sampling", "method" ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/ff.py#L135-L145
227,201
SALib/SALib
src/SALib/sample/common_args.py
setup
def setup(parser): """Add common sampling options to CLI parser. Parameters ---------- parser : argparse object Returns ---------- Updated argparse object """ parser.add_argument( '-p', '--paramfile', type=str, required=True, help='Parameter Range File') parser.add_argument( '-o', '--output', type=str, required=True, help='Output File') parser.add_argument( '-s', '--seed', type=int, required=False, default=None, help='Random Seed') parser.add_argument( '--delimiter', type=str, required=False, default=' ', help='Column delimiter') parser.add_argument('--precision', type=int, required=False, default=8, help='Output floating-point precision') return parser
python
def setup(parser): """Add common sampling options to CLI parser. Parameters ---------- parser : argparse object Returns ---------- Updated argparse object """ parser.add_argument( '-p', '--paramfile', type=str, required=True, help='Parameter Range File') parser.add_argument( '-o', '--output', type=str, required=True, help='Output File') parser.add_argument( '-s', '--seed', type=int, required=False, default=None, help='Random Seed') parser.add_argument( '--delimiter', type=str, required=False, default=' ', help='Column delimiter') parser.add_argument('--precision', type=int, required=False, default=8, help='Output floating-point precision') return parser
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Add common sampling options to CLI parser. Parameters ---------- parser : argparse object Returns ---------- Updated argparse object
[ "Add", "common", "sampling", "options", "to", "CLI", "parser", "." ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/common_args.py#L4-L29
227,202
SALib/SALib
src/SALib/sample/common_args.py
run_cli
def run_cli(cli_parser, run_sample, known_args=None): """Run sampling with CLI arguments. Parameters ---------- cli_parser : function Function to add method specific arguments to parser run_sample: function Method specific function that runs the sampling known_args: list [optional] Additional arguments to parse Returns ---------- argparse object """ parser = create(cli_parser) args = parser.parse_args(known_args) run_sample(args)
python
def run_cli(cli_parser, run_sample, known_args=None): """Run sampling with CLI arguments. Parameters ---------- cli_parser : function Function to add method specific arguments to parser run_sample: function Method specific function that runs the sampling known_args: list [optional] Additional arguments to parse Returns ---------- argparse object """ parser = create(cli_parser) args = parser.parse_args(known_args) run_sample(args)
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Run sampling with CLI arguments. Parameters ---------- cli_parser : function Function to add method specific arguments to parser run_sample: function Method specific function that runs the sampling known_args: list [optional] Additional arguments to parse Returns ---------- argparse object
[ "Run", "sampling", "with", "CLI", "arguments", "." ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/common_args.py#L54-L73
227,203
SALib/SALib
src/SALib/sample/morris/strategy.py
Strategy.run_checks
def run_checks(number_samples, k_choices): """Runs checks on `k_choices` """ assert isinstance(k_choices, int), \ "Number of optimal trajectories should be an integer" if k_choices < 2: raise ValueError( "The number of optimal trajectories must be set to 2 or more.") if k_choices >= number_samples: msg = "The number of optimal trajectories should be less than the \ number of samples" raise ValueError(msg)
python
def run_checks(number_samples, k_choices): """Runs checks on `k_choices` """ assert isinstance(k_choices, int), \ "Number of optimal trajectories should be an integer" if k_choices < 2: raise ValueError( "The number of optimal trajectories must be set to 2 or more.") if k_choices >= number_samples: msg = "The number of optimal trajectories should be less than the \ number of samples" raise ValueError(msg)
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Runs checks on `k_choices`
[ "Runs", "checks", "on", "k_choices" ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/strategy.py#L123-L135
227,204
SALib/SALib
src/SALib/sample/morris/strategy.py
Strategy._make_index_list
def _make_index_list(num_samples, num_params, num_groups=None): """Identify indices of input sample associated with each trajectory For each trajectory, identifies the indexes of the input sample which is a function of the number of factors/groups and the number of samples Arguments --------- num_samples : int The number of trajectories num_params : int The number of parameters num_groups : int The number of groups Returns ------- list of numpy.ndarray Example ------- >>> BruteForce()._make_index_list(num_samples=4, num_params=3, num_groups=2) [np.array([0, 1, 2]), np.array([3, 4, 5]), np.array([6, 7, 8]), np.array([9, 10, 11])] """ if num_groups is None: num_groups = num_params index_list = [] for j in range(num_samples): index_list.append(np.arange(num_groups + 1) + j * (num_groups + 1)) return index_list
python
def _make_index_list(num_samples, num_params, num_groups=None): """Identify indices of input sample associated with each trajectory For each trajectory, identifies the indexes of the input sample which is a function of the number of factors/groups and the number of samples Arguments --------- num_samples : int The number of trajectories num_params : int The number of parameters num_groups : int The number of groups Returns ------- list of numpy.ndarray Example ------- >>> BruteForce()._make_index_list(num_samples=4, num_params=3, num_groups=2) [np.array([0, 1, 2]), np.array([3, 4, 5]), np.array([6, 7, 8]), np.array([9, 10, 11])] """ if num_groups is None: num_groups = num_params index_list = [] for j in range(num_samples): index_list.append(np.arange(num_groups + 1) + j * (num_groups + 1)) return index_list
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Identify indices of input sample associated with each trajectory For each trajectory, identifies the indexes of the input sample which is a function of the number of factors/groups and the number of samples Arguments --------- num_samples : int The number of trajectories num_params : int The number of parameters num_groups : int The number of groups Returns ------- list of numpy.ndarray Example ------- >>> BruteForce()._make_index_list(num_samples=4, num_params=3, num_groups=2) [np.array([0, 1, 2]), np.array([3, 4, 5]), np.array([6, 7, 8]), np.array([9, 10, 11])]
[ "Identify", "indices", "of", "input", "sample", "associated", "with", "each", "trajectory" ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/strategy.py#L138-L170
227,205
SALib/SALib
src/SALib/sample/morris/strategy.py
Strategy.compile_output
def compile_output(self, input_sample, num_samples, num_params, maximum_combo, num_groups=None): """Picks the trajectories from the input Arguments --------- input_sample : numpy.ndarray num_samples : int num_params : int maximum_combo : list num_groups : int """ if num_groups is None: num_groups = num_params self.check_input_sample(input_sample, num_groups, num_samples) index_list = self._make_index_list(num_samples, num_params, num_groups) output = np.zeros( (np.size(maximum_combo) * (num_groups + 1), num_params)) for counter, combo in enumerate(maximum_combo): output[index_list[counter]] = np.array( input_sample[index_list[combo]]) return output
python
def compile_output(self, input_sample, num_samples, num_params, maximum_combo, num_groups=None): """Picks the trajectories from the input Arguments --------- input_sample : numpy.ndarray num_samples : int num_params : int maximum_combo : list num_groups : int """ if num_groups is None: num_groups = num_params self.check_input_sample(input_sample, num_groups, num_samples) index_list = self._make_index_list(num_samples, num_params, num_groups) output = np.zeros( (np.size(maximum_combo) * (num_groups + 1), num_params)) for counter, combo in enumerate(maximum_combo): output[index_list[counter]] = np.array( input_sample[index_list[combo]]) return output
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Picks the trajectories from the input Arguments --------- input_sample : numpy.ndarray num_samples : int num_params : int maximum_combo : list num_groups : int
[ "Picks", "the", "trajectories", "from", "the", "input" ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/strategy.py#L172-L198
227,206
SALib/SALib
src/SALib/sample/morris/strategy.py
Strategy.check_input_sample
def check_input_sample(input_sample, num_params, num_samples): """Check the `input_sample` is valid Checks input sample is: - the correct size - values between 0 and 1 Arguments --------- input_sample : numpy.ndarray num_params : int num_samples : int """ assert type(input_sample) == np.ndarray, \ "Input sample is not an numpy array" assert input_sample.shape[0] == (num_params + 1) * num_samples, \ "Input sample does not match number of parameters or groups" assert np.any((input_sample >= 0) | (input_sample <= 1)), \ "Input sample must be scaled between 0 and 1"
python
def check_input_sample(input_sample, num_params, num_samples): """Check the `input_sample` is valid Checks input sample is: - the correct size - values between 0 and 1 Arguments --------- input_sample : numpy.ndarray num_params : int num_samples : int """ assert type(input_sample) == np.ndarray, \ "Input sample is not an numpy array" assert input_sample.shape[0] == (num_params + 1) * num_samples, \ "Input sample does not match number of parameters or groups" assert np.any((input_sample >= 0) | (input_sample <= 1)), \ "Input sample must be scaled between 0 and 1"
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Check the `input_sample` is valid Checks input sample is: - the correct size - values between 0 and 1 Arguments --------- input_sample : numpy.ndarray num_params : int num_samples : int
[ "Check", "the", "input_sample", "is", "valid" ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/strategy.py#L201-L219
227,207
SALib/SALib
src/SALib/sample/morris/strategy.py
Strategy.compute_distance
def compute_distance(m, l): '''Compute distance between two trajectories Returns ------- numpy.ndarray ''' if np.shape(m) != np.shape(l): raise ValueError("Input matrices are different sizes") if np.array_equal(m, l): # print("Trajectory %s and %s are equal" % (m, l)) distance = 0 else: distance = np.array(np.sum(cdist(m, l)), dtype=np.float32) return distance
python
def compute_distance(m, l): '''Compute distance between two trajectories Returns ------- numpy.ndarray ''' if np.shape(m) != np.shape(l): raise ValueError("Input matrices are different sizes") if np.array_equal(m, l): # print("Trajectory %s and %s are equal" % (m, l)) distance = 0 else: distance = np.array(np.sum(cdist(m, l)), dtype=np.float32) return distance
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Compute distance between two trajectories Returns ------- numpy.ndarray
[ "Compute", "distance", "between", "two", "trajectories" ]
9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/strategy.py#L222-L238
227,208
SALib/SALib
src/SALib/sample/morris/strategy.py
Strategy.compute_distance_matrix
def compute_distance_matrix(self, input_sample, num_samples, num_params, num_groups=None, local_optimization=False): """Computes the distance between each and every trajectory Each entry in the matrix represents the sum of the geometric distances between all the pairs of points of the two trajectories If the `groups` argument is filled, then the distances are still calculated for each trajectory, Arguments --------- input_sample : numpy.ndarray The input sample of trajectories for which to compute the distance matrix num_samples : int The number of trajectories num_params : int The number of factors num_groups : int, default=None The number of groups local_optimization : bool, default=False If True, fills the lower triangle of the distance matrix Returns ------- distance_matrix : numpy.ndarray """ if num_groups: self.check_input_sample(input_sample, num_groups, num_samples) else: self.check_input_sample(input_sample, num_params, num_samples) index_list = self._make_index_list(num_samples, num_params, num_groups) distance_matrix = np.zeros( (num_samples, num_samples), dtype=np.float32) for j in range(num_samples): input_1 = input_sample[index_list[j]] for k in range(j + 1, num_samples): input_2 = input_sample[index_list[k]] # Fills the lower triangle of the matrix if local_optimization is True: distance_matrix[j, k] = self.compute_distance( input_1, input_2) distance_matrix[k, j] = self.compute_distance(input_1, input_2) return distance_matrix
python
def compute_distance_matrix(self, input_sample, num_samples, num_params, num_groups=None, local_optimization=False): """Computes the distance between each and every trajectory Each entry in the matrix represents the sum of the geometric distances between all the pairs of points of the two trajectories If the `groups` argument is filled, then the distances are still calculated for each trajectory, Arguments --------- input_sample : numpy.ndarray The input sample of trajectories for which to compute the distance matrix num_samples : int The number of trajectories num_params : int The number of factors num_groups : int, default=None The number of groups local_optimization : bool, default=False If True, fills the lower triangle of the distance matrix Returns ------- distance_matrix : numpy.ndarray """ if num_groups: self.check_input_sample(input_sample, num_groups, num_samples) else: self.check_input_sample(input_sample, num_params, num_samples) index_list = self._make_index_list(num_samples, num_params, num_groups) distance_matrix = np.zeros( (num_samples, num_samples), dtype=np.float32) for j in range(num_samples): input_1 = input_sample[index_list[j]] for k in range(j + 1, num_samples): input_2 = input_sample[index_list[k]] # Fills the lower triangle of the matrix if local_optimization is True: distance_matrix[j, k] = self.compute_distance( input_1, input_2) distance_matrix[k, j] = self.compute_distance(input_1, input_2) return distance_matrix
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9744d73bb17cfcffc8282c7dc4a727efdc4bea3f
https://github.com/SALib/SALib/blob/9744d73bb17cfcffc8282c7dc4a727efdc4bea3f/src/SALib/sample/morris/strategy.py#L240-L290
227,209
nicodv/kmodes
kmodes/kmodes.py
move_point_cat
def move_point_cat(point, ipoint, to_clust, from_clust, cl_attr_freq, membship, centroids): """Move point between clusters, categorical attributes.""" membship[to_clust, ipoint] = 1 membship[from_clust, ipoint] = 0 # Update frequencies of attributes in cluster. for iattr, curattr in enumerate(point): to_attr_counts = cl_attr_freq[to_clust][iattr] from_attr_counts = cl_attr_freq[from_clust][iattr] # Increment the attribute count for the new "to" cluster to_attr_counts[curattr] += 1 current_attribute_value_freq = to_attr_counts[curattr] current_centroid_value = centroids[to_clust][iattr] current_centroid_freq = to_attr_counts[current_centroid_value] if current_centroid_freq < current_attribute_value_freq: # We have incremented this value to the new mode. Update the centroid. centroids[to_clust][iattr] = curattr # Decrement the attribute count for the old "from" cluster from_attr_counts[curattr] -= 1 old_centroid_value = centroids[from_clust][iattr] if old_centroid_value == curattr: # We have just removed a count from the old centroid value. We need to # recalculate the centroid as it may no longer be the maximum centroids[from_clust][iattr] = get_max_value_key(from_attr_counts) return cl_attr_freq, membship, centroids
python
def move_point_cat(point, ipoint, to_clust, from_clust, cl_attr_freq, membship, centroids): """Move point between clusters, categorical attributes.""" membship[to_clust, ipoint] = 1 membship[from_clust, ipoint] = 0 # Update frequencies of attributes in cluster. for iattr, curattr in enumerate(point): to_attr_counts = cl_attr_freq[to_clust][iattr] from_attr_counts = cl_attr_freq[from_clust][iattr] # Increment the attribute count for the new "to" cluster to_attr_counts[curattr] += 1 current_attribute_value_freq = to_attr_counts[curattr] current_centroid_value = centroids[to_clust][iattr] current_centroid_freq = to_attr_counts[current_centroid_value] if current_centroid_freq < current_attribute_value_freq: # We have incremented this value to the new mode. Update the centroid. centroids[to_clust][iattr] = curattr # Decrement the attribute count for the old "from" cluster from_attr_counts[curattr] -= 1 old_centroid_value = centroids[from_clust][iattr] if old_centroid_value == curattr: # We have just removed a count from the old centroid value. We need to # recalculate the centroid as it may no longer be the maximum centroids[from_clust][iattr] = get_max_value_key(from_attr_counts) return cl_attr_freq, membship, centroids
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Move point between clusters, categorical attributes.
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kmodes.py#L83-L112
227,210
nicodv/kmodes
kmodes/kmodes.py
_labels_cost
def _labels_cost(X, centroids, dissim, membship=None): """Calculate labels and cost function given a matrix of points and a list of centroids for the k-modes algorithm. """ X = check_array(X) n_points = X.shape[0] cost = 0. labels = np.empty(n_points, dtype=np.uint16) for ipoint, curpoint in enumerate(X): diss = dissim(centroids, curpoint, X=X, membship=membship) clust = np.argmin(diss) labels[ipoint] = clust cost += diss[clust] return labels, cost
python
def _labels_cost(X, centroids, dissim, membship=None): """Calculate labels and cost function given a matrix of points and a list of centroids for the k-modes algorithm. """ X = check_array(X) n_points = X.shape[0] cost = 0. labels = np.empty(n_points, dtype=np.uint16) for ipoint, curpoint in enumerate(X): diss = dissim(centroids, curpoint, X=X, membship=membship) clust = np.argmin(diss) labels[ipoint] = clust cost += diss[clust] return labels, cost
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Calculate labels and cost function given a matrix of points and a list of centroids for the k-modes algorithm.
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kmodes.py#L115-L131
227,211
nicodv/kmodes
kmodes/kmodes.py
_k_modes_iter
def _k_modes_iter(X, centroids, cl_attr_freq, membship, dissim, random_state): """Single iteration of k-modes clustering algorithm""" moves = 0 for ipoint, curpoint in enumerate(X): clust = np.argmin(dissim(centroids, curpoint, X=X, membship=membship)) if membship[clust, ipoint]: # Point is already in its right place. continue # Move point, and update old/new cluster frequencies and centroids. moves += 1 old_clust = np.argwhere(membship[:, ipoint])[0][0] cl_attr_freq, membship, centroids = move_point_cat( curpoint, ipoint, clust, old_clust, cl_attr_freq, membship, centroids ) # In case of an empty cluster, reinitialize with a random point # from the largest cluster. if not membship[old_clust, :].any(): from_clust = membship.sum(axis=1).argmax() choices = [ii for ii, ch in enumerate(membship[from_clust, :]) if ch] rindx = random_state.choice(choices) cl_attr_freq, membship, centroids = move_point_cat( X[rindx], rindx, old_clust, from_clust, cl_attr_freq, membship, centroids ) return centroids, moves
python
def _k_modes_iter(X, centroids, cl_attr_freq, membship, dissim, random_state): """Single iteration of k-modes clustering algorithm""" moves = 0 for ipoint, curpoint in enumerate(X): clust = np.argmin(dissim(centroids, curpoint, X=X, membship=membship)) if membship[clust, ipoint]: # Point is already in its right place. continue # Move point, and update old/new cluster frequencies and centroids. moves += 1 old_clust = np.argwhere(membship[:, ipoint])[0][0] cl_attr_freq, membship, centroids = move_point_cat( curpoint, ipoint, clust, old_clust, cl_attr_freq, membship, centroids ) # In case of an empty cluster, reinitialize with a random point # from the largest cluster. if not membship[old_clust, :].any(): from_clust = membship.sum(axis=1).argmax() choices = [ii for ii, ch in enumerate(membship[from_clust, :]) if ch] rindx = random_state.choice(choices) cl_attr_freq, membship, centroids = move_point_cat( X[rindx], rindx, old_clust, from_clust, cl_attr_freq, membship, centroids ) return centroids, moves
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Single iteration of k-modes clustering algorithm
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kmodes.py#L134-L162
227,212
nicodv/kmodes
kmodes/kmodes.py
k_modes
def k_modes(X, n_clusters, max_iter, dissim, init, n_init, verbose, random_state, n_jobs): """k-modes algorithm""" random_state = check_random_state(random_state) if sparse.issparse(X): raise TypeError("k-modes does not support sparse data.") X = check_array(X, dtype=None) # Convert the categorical values in X to integers for speed. # Based on the unique values in X, we can make a mapping to achieve this. X, enc_map = encode_features(X) n_points, n_attrs = X.shape assert n_clusters <= n_points, "Cannot have more clusters ({}) " \ "than data points ({}).".format(n_clusters, n_points) # Are there more n_clusters than unique rows? Then set the unique # rows as initial values and skip iteration. unique = get_unique_rows(X) n_unique = unique.shape[0] if n_unique <= n_clusters: max_iter = 0 n_init = 1 n_clusters = n_unique init = unique results = [] seeds = random_state.randint(np.iinfo(np.int32).max, size=n_init) if n_jobs == 1: for init_no in range(n_init): results.append(k_modes_single(X, n_clusters, n_points, n_attrs, max_iter, dissim, init, init_no, verbose, seeds[init_no])) else: results = Parallel(n_jobs=n_jobs, verbose=0)( delayed(k_modes_single)(X, n_clusters, n_points, n_attrs, max_iter, dissim, init, init_no, verbose, seed) for init_no, seed in enumerate(seeds)) all_centroids, all_labels, all_costs, all_n_iters = zip(*results) best = np.argmin(all_costs) if n_init > 1 and verbose: print("Best run was number {}".format(best + 1)) return all_centroids[best], enc_map, all_labels[best], \ all_costs[best], all_n_iters[best]
python
def k_modes(X, n_clusters, max_iter, dissim, init, n_init, verbose, random_state, n_jobs): """k-modes algorithm""" random_state = check_random_state(random_state) if sparse.issparse(X): raise TypeError("k-modes does not support sparse data.") X = check_array(X, dtype=None) # Convert the categorical values in X to integers for speed. # Based on the unique values in X, we can make a mapping to achieve this. X, enc_map = encode_features(X) n_points, n_attrs = X.shape assert n_clusters <= n_points, "Cannot have more clusters ({}) " \ "than data points ({}).".format(n_clusters, n_points) # Are there more n_clusters than unique rows? Then set the unique # rows as initial values and skip iteration. unique = get_unique_rows(X) n_unique = unique.shape[0] if n_unique <= n_clusters: max_iter = 0 n_init = 1 n_clusters = n_unique init = unique results = [] seeds = random_state.randint(np.iinfo(np.int32).max, size=n_init) if n_jobs == 1: for init_no in range(n_init): results.append(k_modes_single(X, n_clusters, n_points, n_attrs, max_iter, dissim, init, init_no, verbose, seeds[init_no])) else: results = Parallel(n_jobs=n_jobs, verbose=0)( delayed(k_modes_single)(X, n_clusters, n_points, n_attrs, max_iter, dissim, init, init_no, verbose, seed) for init_no, seed in enumerate(seeds)) all_centroids, all_labels, all_costs, all_n_iters = zip(*results) best = np.argmin(all_costs) if n_init > 1 and verbose: print("Best run was number {}".format(best + 1)) return all_centroids[best], enc_map, all_labels[best], \ all_costs[best], all_n_iters[best]
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k-modes algorithm
[ "k", "-", "modes", "algorithm" ]
cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kmodes.py#L243-L287
227,213
nicodv/kmodes
kmodes/kmodes.py
KModes.fit
def fit(self, X, y=None, **kwargs): """Compute k-modes clustering. Parameters ---------- X : array-like, shape=[n_samples, n_features] """ X = pandas_to_numpy(X) random_state = check_random_state(self.random_state) self._enc_cluster_centroids, self._enc_map, self.labels_,\ self.cost_, self.n_iter_ = k_modes(X, self.n_clusters, self.max_iter, self.cat_dissim, self.init, self.n_init, self.verbose, random_state, self.n_jobs) return self
python
def fit(self, X, y=None, **kwargs): """Compute k-modes clustering. Parameters ---------- X : array-like, shape=[n_samples, n_features] """ X = pandas_to_numpy(X) random_state = check_random_state(self.random_state) self._enc_cluster_centroids, self._enc_map, self.labels_,\ self.cost_, self.n_iter_ = k_modes(X, self.n_clusters, self.max_iter, self.cat_dissim, self.init, self.n_init, self.verbose, random_state, self.n_jobs) return self
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Compute k-modes clustering. Parameters ---------- X : array-like, shape=[n_samples, n_features]
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kmodes.py#L381-L401
227,214
nicodv/kmodes
kmodes/kmodes.py
KModes.fit_predict
def fit_predict(self, X, y=None, **kwargs): """Compute cluster centroids and predict cluster index for each sample. Convenience method; equivalent to calling fit(X) followed by predict(X). """ return self.fit(X, **kwargs).predict(X, **kwargs)
python
def fit_predict(self, X, y=None, **kwargs): """Compute cluster centroids and predict cluster index for each sample. Convenience method; equivalent to calling fit(X) followed by predict(X). """ return self.fit(X, **kwargs).predict(X, **kwargs)
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Compute cluster centroids and predict cluster index for each sample. Convenience method; equivalent to calling fit(X) followed by predict(X).
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kmodes.py#L403-L409
227,215
nicodv/kmodes
kmodes/util/__init__.py
get_max_value_key
def get_max_value_key(dic): """Gets the key for the maximum value in a dict.""" v = np.array(list(dic.values())) k = np.array(list(dic.keys())) maxima = np.where(v == np.max(v))[0] if len(maxima) == 1: return k[maxima[0]] else: # In order to be consistent, always selects the minimum key # (guaranteed to be unique) when there are multiple maximum values. return k[maxima[np.argmin(k[maxima])]]
python
def get_max_value_key(dic): """Gets the key for the maximum value in a dict.""" v = np.array(list(dic.values())) k = np.array(list(dic.keys())) maxima = np.where(v == np.max(v))[0] if len(maxima) == 1: return k[maxima[0]] else: # In order to be consistent, always selects the minimum key # (guaranteed to be unique) when there are multiple maximum values. return k[maxima[np.argmin(k[maxima])]]
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Gets the key for the maximum value in a dict.
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/util/__init__.py#L12-L23
227,216
nicodv/kmodes
kmodes/util/__init__.py
decode_centroids
def decode_centroids(encoded, mapping): """Decodes the encoded centroids array back to the original data labels using a list of mappings. """ decoded = [] for ii in range(encoded.shape[1]): # Invert the mapping so that we can decode. inv_mapping = {v: k for k, v in mapping[ii].items()} decoded.append(np.vectorize(inv_mapping.__getitem__)(encoded[:, ii])) return np.atleast_2d(np.array(decoded)).T
python
def decode_centroids(encoded, mapping): """Decodes the encoded centroids array back to the original data labels using a list of mappings. """ decoded = [] for ii in range(encoded.shape[1]): # Invert the mapping so that we can decode. inv_mapping = {v: k for k, v in mapping[ii].items()} decoded.append(np.vectorize(inv_mapping.__getitem__)(encoded[:, ii])) return np.atleast_2d(np.array(decoded)).T
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Decodes the encoded centroids array back to the original data labels using a list of mappings.
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/util/__init__.py#L54-L63
227,217
nicodv/kmodes
kmodes/kprototypes.py
move_point_num
def move_point_num(point, to_clust, from_clust, cl_attr_sum, cl_memb_sum): """Move point between clusters, numerical attributes.""" # Update sum of attributes in cluster. for iattr, curattr in enumerate(point): cl_attr_sum[to_clust][iattr] += curattr cl_attr_sum[from_clust][iattr] -= curattr # Update sums of memberships in cluster cl_memb_sum[to_clust] += 1 cl_memb_sum[from_clust] -= 1 return cl_attr_sum, cl_memb_sum
python
def move_point_num(point, to_clust, from_clust, cl_attr_sum, cl_memb_sum): """Move point between clusters, numerical attributes.""" # Update sum of attributes in cluster. for iattr, curattr in enumerate(point): cl_attr_sum[to_clust][iattr] += curattr cl_attr_sum[from_clust][iattr] -= curattr # Update sums of memberships in cluster cl_memb_sum[to_clust] += 1 cl_memb_sum[from_clust] -= 1 return cl_attr_sum, cl_memb_sum
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Move point between clusters, numerical attributes.
[ "Move", "point", "between", "clusters", "numerical", "attributes", "." ]
cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kprototypes.py#L28-L37
227,218
nicodv/kmodes
kmodes/kprototypes.py
_split_num_cat
def _split_num_cat(X, categorical): """Extract numerical and categorical columns. Convert to numpy arrays, if needed. :param X: Feature matrix :param categorical: Indices of categorical columns """ Xnum = np.asanyarray(X[:, [ii for ii in range(X.shape[1]) if ii not in categorical]]).astype(np.float64) Xcat = np.asanyarray(X[:, categorical]) return Xnum, Xcat
python
def _split_num_cat(X, categorical): """Extract numerical and categorical columns. Convert to numpy arrays, if needed. :param X: Feature matrix :param categorical: Indices of categorical columns """ Xnum = np.asanyarray(X[:, [ii for ii in range(X.shape[1]) if ii not in categorical]]).astype(np.float64) Xcat = np.asanyarray(X[:, categorical]) return Xnum, Xcat
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Extract numerical and categorical columns. Convert to numpy arrays, if needed. :param X: Feature matrix :param categorical: Indices of categorical columns
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kprototypes.py#L40-L50
227,219
nicodv/kmodes
kmodes/kprototypes.py
_labels_cost
def _labels_cost(Xnum, Xcat, centroids, num_dissim, cat_dissim, gamma, membship=None): """Calculate labels and cost function given a matrix of points and a list of centroids for the k-prototypes algorithm. """ n_points = Xnum.shape[0] Xnum = check_array(Xnum) cost = 0. labels = np.empty(n_points, dtype=np.uint16) for ipoint in range(n_points): # Numerical cost = sum of Euclidean distances num_costs = num_dissim(centroids[0], Xnum[ipoint]) cat_costs = cat_dissim(centroids[1], Xcat[ipoint], X=Xcat, membship=membship) # Gamma relates the categorical cost to the numerical cost. tot_costs = num_costs + gamma * cat_costs clust = np.argmin(tot_costs) labels[ipoint] = clust cost += tot_costs[clust] return labels, cost
python
def _labels_cost(Xnum, Xcat, centroids, num_dissim, cat_dissim, gamma, membship=None): """Calculate labels and cost function given a matrix of points and a list of centroids for the k-prototypes algorithm. """ n_points = Xnum.shape[0] Xnum = check_array(Xnum) cost = 0. labels = np.empty(n_points, dtype=np.uint16) for ipoint in range(n_points): # Numerical cost = sum of Euclidean distances num_costs = num_dissim(centroids[0], Xnum[ipoint]) cat_costs = cat_dissim(centroids[1], Xcat[ipoint], X=Xcat, membship=membship) # Gamma relates the categorical cost to the numerical cost. tot_costs = num_costs + gamma * cat_costs clust = np.argmin(tot_costs) labels[ipoint] = clust cost += tot_costs[clust] return labels, cost
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Calculate labels and cost function given a matrix of points and a list of centroids for the k-prototypes algorithm.
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kprototypes.py#L53-L73
227,220
nicodv/kmodes
kmodes/kprototypes.py
_k_prototypes_iter
def _k_prototypes_iter(Xnum, Xcat, centroids, cl_attr_sum, cl_memb_sum, cl_attr_freq, membship, num_dissim, cat_dissim, gamma, random_state): """Single iteration of the k-prototypes algorithm""" moves = 0 for ipoint in range(Xnum.shape[0]): clust = np.argmin( num_dissim(centroids[0], Xnum[ipoint]) + gamma * cat_dissim(centroids[1], Xcat[ipoint], X=Xcat, membship=membship) ) if membship[clust, ipoint]: # Point is already in its right place. continue # Move point, and update old/new cluster frequencies and centroids. moves += 1 old_clust = np.argwhere(membship[:, ipoint])[0][0] # Note that membship gets updated by kmodes.move_point_cat. # move_point_num only updates things specific to the k-means part. cl_attr_sum, cl_memb_sum = move_point_num( Xnum[ipoint], clust, old_clust, cl_attr_sum, cl_memb_sum ) cl_attr_freq, membship, centroids[1] = kmodes.move_point_cat( Xcat[ipoint], ipoint, clust, old_clust, cl_attr_freq, membship, centroids[1] ) # Update old and new centroids for numerical attributes using # the means and sums of all values for iattr in range(len(Xnum[ipoint])): for curc in (clust, old_clust): if cl_memb_sum[curc]: centroids[0][curc, iattr] = cl_attr_sum[curc, iattr] / cl_memb_sum[curc] else: centroids[0][curc, iattr] = 0. # In case of an empty cluster, reinitialize with a random point # from largest cluster. if not cl_memb_sum[old_clust]: from_clust = membship.sum(axis=1).argmax() choices = [ii for ii, ch in enumerate(membship[from_clust, :]) if ch] rindx = random_state.choice(choices) cl_attr_sum, cl_memb_sum = move_point_num( Xnum[rindx], old_clust, from_clust, cl_attr_sum, cl_memb_sum ) cl_attr_freq, membship, centroids[1] = kmodes.move_point_cat( Xcat[rindx], rindx, old_clust, from_clust, cl_attr_freq, membship, centroids[1] ) return centroids, moves
python
def _k_prototypes_iter(Xnum, Xcat, centroids, cl_attr_sum, cl_memb_sum, cl_attr_freq, membship, num_dissim, cat_dissim, gamma, random_state): """Single iteration of the k-prototypes algorithm""" moves = 0 for ipoint in range(Xnum.shape[0]): clust = np.argmin( num_dissim(centroids[0], Xnum[ipoint]) + gamma * cat_dissim(centroids[1], Xcat[ipoint], X=Xcat, membship=membship) ) if membship[clust, ipoint]: # Point is already in its right place. continue # Move point, and update old/new cluster frequencies and centroids. moves += 1 old_clust = np.argwhere(membship[:, ipoint])[0][0] # Note that membship gets updated by kmodes.move_point_cat. # move_point_num only updates things specific to the k-means part. cl_attr_sum, cl_memb_sum = move_point_num( Xnum[ipoint], clust, old_clust, cl_attr_sum, cl_memb_sum ) cl_attr_freq, membship, centroids[1] = kmodes.move_point_cat( Xcat[ipoint], ipoint, clust, old_clust, cl_attr_freq, membship, centroids[1] ) # Update old and new centroids for numerical attributes using # the means and sums of all values for iattr in range(len(Xnum[ipoint])): for curc in (clust, old_clust): if cl_memb_sum[curc]: centroids[0][curc, iattr] = cl_attr_sum[curc, iattr] / cl_memb_sum[curc] else: centroids[0][curc, iattr] = 0. # In case of an empty cluster, reinitialize with a random point # from largest cluster. if not cl_memb_sum[old_clust]: from_clust = membship.sum(axis=1).argmax() choices = [ii for ii, ch in enumerate(membship[from_clust, :]) if ch] rindx = random_state.choice(choices) cl_attr_sum, cl_memb_sum = move_point_num( Xnum[rindx], old_clust, from_clust, cl_attr_sum, cl_memb_sum ) cl_attr_freq, membship, centroids[1] = kmodes.move_point_cat( Xcat[rindx], rindx, old_clust, from_clust, cl_attr_freq, membship, centroids[1] ) return centroids, moves
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Single iteration of the k-prototypes algorithm
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kprototypes.py#L76-L127
227,221
nicodv/kmodes
kmodes/kprototypes.py
k_prototypes
def k_prototypes(X, categorical, n_clusters, max_iter, num_dissim, cat_dissim, gamma, init, n_init, verbose, random_state, n_jobs): """k-prototypes algorithm""" random_state = check_random_state(random_state) if sparse.issparse(X): raise TypeError("k-prototypes does not support sparse data.") if categorical is None or not categorical: raise NotImplementedError( "No categorical data selected, effectively doing k-means. " "Present a list of categorical columns, or use scikit-learn's " "KMeans instead." ) if isinstance(categorical, int): categorical = [categorical] assert len(categorical) != X.shape[1], \ "All columns are categorical, use k-modes instead of k-prototypes." assert max(categorical) < X.shape[1], \ "Categorical index larger than number of columns." ncatattrs = len(categorical) nnumattrs = X.shape[1] - ncatattrs n_points = X.shape[0] assert n_clusters <= n_points, "Cannot have more clusters ({}) " \ "than data points ({}).".format(n_clusters, n_points) Xnum, Xcat = _split_num_cat(X, categorical) Xnum, Xcat = check_array(Xnum), check_array(Xcat, dtype=None) # Convert the categorical values in Xcat to integers for speed. # Based on the unique values in Xcat, we can make a mapping to achieve this. Xcat, enc_map = encode_features(Xcat) # Are there more n_clusters than unique rows? Then set the unique # rows as initial values and skip iteration. unique = get_unique_rows(X) n_unique = unique.shape[0] if n_unique <= n_clusters: max_iter = 0 n_init = 1 n_clusters = n_unique init = list(_split_num_cat(unique, categorical)) init[1], _ = encode_features(init[1], enc_map) # Estimate a good value for gamma, which determines the weighing of # categorical values in clusters (see Huang [1997]). if gamma is None: gamma = 0.5 * Xnum.std() results = [] seeds = random_state.randint(np.iinfo(np.int32).max, size=n_init) if n_jobs == 1: for init_no in range(n_init): results.append(k_prototypes_single(Xnum, Xcat, nnumattrs, ncatattrs, n_clusters, n_points, max_iter, num_dissim, cat_dissim, gamma, init, init_no, verbose, seeds[init_no])) else: results = Parallel(n_jobs=n_jobs, verbose=0)( delayed(k_prototypes_single)(Xnum, Xcat, nnumattrs, ncatattrs, n_clusters, n_points, max_iter, num_dissim, cat_dissim, gamma, init, init_no, verbose, seed) for init_no, seed in enumerate(seeds)) all_centroids, all_labels, all_costs, all_n_iters = zip(*results) best = np.argmin(all_costs) if n_init > 1 and verbose: print("Best run was number {}".format(best + 1)) # Note: return gamma in case it was automatically determined. return all_centroids[best], enc_map, all_labels[best], \ all_costs[best], all_n_iters[best], gamma
python
def k_prototypes(X, categorical, n_clusters, max_iter, num_dissim, cat_dissim, gamma, init, n_init, verbose, random_state, n_jobs): """k-prototypes algorithm""" random_state = check_random_state(random_state) if sparse.issparse(X): raise TypeError("k-prototypes does not support sparse data.") if categorical is None or not categorical: raise NotImplementedError( "No categorical data selected, effectively doing k-means. " "Present a list of categorical columns, or use scikit-learn's " "KMeans instead." ) if isinstance(categorical, int): categorical = [categorical] assert len(categorical) != X.shape[1], \ "All columns are categorical, use k-modes instead of k-prototypes." assert max(categorical) < X.shape[1], \ "Categorical index larger than number of columns." ncatattrs = len(categorical) nnumattrs = X.shape[1] - ncatattrs n_points = X.shape[0] assert n_clusters <= n_points, "Cannot have more clusters ({}) " \ "than data points ({}).".format(n_clusters, n_points) Xnum, Xcat = _split_num_cat(X, categorical) Xnum, Xcat = check_array(Xnum), check_array(Xcat, dtype=None) # Convert the categorical values in Xcat to integers for speed. # Based on the unique values in Xcat, we can make a mapping to achieve this. Xcat, enc_map = encode_features(Xcat) # Are there more n_clusters than unique rows? Then set the unique # rows as initial values and skip iteration. unique = get_unique_rows(X) n_unique = unique.shape[0] if n_unique <= n_clusters: max_iter = 0 n_init = 1 n_clusters = n_unique init = list(_split_num_cat(unique, categorical)) init[1], _ = encode_features(init[1], enc_map) # Estimate a good value for gamma, which determines the weighing of # categorical values in clusters (see Huang [1997]). if gamma is None: gamma = 0.5 * Xnum.std() results = [] seeds = random_state.randint(np.iinfo(np.int32).max, size=n_init) if n_jobs == 1: for init_no in range(n_init): results.append(k_prototypes_single(Xnum, Xcat, nnumattrs, ncatattrs, n_clusters, n_points, max_iter, num_dissim, cat_dissim, gamma, init, init_no, verbose, seeds[init_no])) else: results = Parallel(n_jobs=n_jobs, verbose=0)( delayed(k_prototypes_single)(Xnum, Xcat, nnumattrs, ncatattrs, n_clusters, n_points, max_iter, num_dissim, cat_dissim, gamma, init, init_no, verbose, seed) for init_no, seed in enumerate(seeds)) all_centroids, all_labels, all_costs, all_n_iters = zip(*results) best = np.argmin(all_costs) if n_init > 1 and verbose: print("Best run was number {}".format(best + 1)) # Note: return gamma in case it was automatically determined. return all_centroids[best], enc_map, all_labels[best], \ all_costs[best], all_n_iters[best], gamma
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k-prototypes algorithm
[ "k", "-", "prototypes", "algorithm" ]
cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kprototypes.py#L255-L327
227,222
nicodv/kmodes
kmodes/kprototypes.py
KPrototypes.fit
def fit(self, X, y=None, categorical=None): """Compute k-prototypes clustering. Parameters ---------- X : array-like, shape=[n_samples, n_features] categorical : Index of columns that contain categorical data """ if categorical is not None: assert isinstance(categorical, (int, list, tuple)), "The 'categorical' \ argument needs to be an integer with the index of the categorical \ column in your data, or a list or tuple of several of them, \ but it is a {}.".format(type(categorical)) X = pandas_to_numpy(X) random_state = check_random_state(self.random_state) # If self.gamma is None, gamma will be automatically determined from # the data. The function below returns its value. self._enc_cluster_centroids, self._enc_map, self.labels_, self.cost_,\ self.n_iter_, self.gamma = k_prototypes(X, categorical, self.n_clusters, self.max_iter, self.num_dissim, self.cat_dissim, self.gamma, self.init, self.n_init, self.verbose, random_state, self.n_jobs) return self
python
def fit(self, X, y=None, categorical=None): """Compute k-prototypes clustering. Parameters ---------- X : array-like, shape=[n_samples, n_features] categorical : Index of columns that contain categorical data """ if categorical is not None: assert isinstance(categorical, (int, list, tuple)), "The 'categorical' \ argument needs to be an integer with the index of the categorical \ column in your data, or a list or tuple of several of them, \ but it is a {}.".format(type(categorical)) X = pandas_to_numpy(X) random_state = check_random_state(self.random_state) # If self.gamma is None, gamma will be automatically determined from # the data. The function below returns its value. self._enc_cluster_centroids, self._enc_map, self.labels_, self.cost_,\ self.n_iter_, self.gamma = k_prototypes(X, categorical, self.n_clusters, self.max_iter, self.num_dissim, self.cat_dissim, self.gamma, self.init, self.n_init, self.verbose, random_state, self.n_jobs) return self
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Compute k-prototypes clustering. Parameters ---------- X : array-like, shape=[n_samples, n_features] categorical : Index of columns that contain categorical data
[ "Compute", "k", "-", "prototypes", "clustering", "." ]
cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/kprototypes.py#L431-L463
227,223
nicodv/kmodes
kmodes/util/dissim.py
euclidean_dissim
def euclidean_dissim(a, b, **_): """Euclidean distance dissimilarity function""" if np.isnan(a).any() or np.isnan(b).any(): raise ValueError("Missing values detected in numerical columns.") return np.sum((a - b) ** 2, axis=1)
python
def euclidean_dissim(a, b, **_): """Euclidean distance dissimilarity function""" if np.isnan(a).any() or np.isnan(b).any(): raise ValueError("Missing values detected in numerical columns.") return np.sum((a - b) ** 2, axis=1)
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Euclidean distance dissimilarity function
[ "Euclidean", "distance", "dissimilarity", "function" ]
cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/util/dissim.py#L13-L17
227,224
nicodv/kmodes
kmodes/util/dissim.py
ng_dissim
def ng_dissim(a, b, X=None, membship=None): """Ng et al.'s dissimilarity measure, as presented in Michael K. Ng, Mark Junjie Li, Joshua Zhexue Huang, and Zengyou He, "On the Impact of Dissimilarity Measure in k-Modes Clustering Algorithm", IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 29, No. 3, January, 2007 This function can potentially speed up training convergence. Note that membship must be a rectangular array such that the len(membship) = len(a) and len(membship[i]) = X.shape[1] In case of missing membship, this function reverts back to matching dissimilarity (e.g., when predicting). """ # Without membership, revert to matching dissimilarity if membship is None: return matching_dissim(a, b) def calc_cjr(b, X, memj, idr): """Num objects w/ category value x_{i,r} for rth attr in jth cluster""" xcids = np.where(memj == 1) return float((np.take(X, xcids, axis=0)[0][:, idr] == b[idr]).sum(0)) def calc_dissim(b, X, memj, idr): # Size of jth cluster cj = float(np.sum(memj)) return (1.0 - (calc_cjr(b, X, memj, idr) / cj)) if cj != 0.0 else 0.0 if len(membship) != a.shape[0] and len(membship[0]) != X.shape[1]: raise ValueError("'membship' must be a rectangular array where " "the number of rows in 'membship' equals the " "number of rows in 'a' and the number of " "columns in 'membship' equals the number of rows in 'X'.") return np.array([np.array([calc_dissim(b, X, membship[idj], idr) if b[idr] == t else 1.0 for idr, t in enumerate(val_a)]).sum(0) for idj, val_a in enumerate(a)])
python
def ng_dissim(a, b, X=None, membship=None): """Ng et al.'s dissimilarity measure, as presented in Michael K. Ng, Mark Junjie Li, Joshua Zhexue Huang, and Zengyou He, "On the Impact of Dissimilarity Measure in k-Modes Clustering Algorithm", IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 29, No. 3, January, 2007 This function can potentially speed up training convergence. Note that membship must be a rectangular array such that the len(membship) = len(a) and len(membship[i]) = X.shape[1] In case of missing membship, this function reverts back to matching dissimilarity (e.g., when predicting). """ # Without membership, revert to matching dissimilarity if membship is None: return matching_dissim(a, b) def calc_cjr(b, X, memj, idr): """Num objects w/ category value x_{i,r} for rth attr in jth cluster""" xcids = np.where(memj == 1) return float((np.take(X, xcids, axis=0)[0][:, idr] == b[idr]).sum(0)) def calc_dissim(b, X, memj, idr): # Size of jth cluster cj = float(np.sum(memj)) return (1.0 - (calc_cjr(b, X, memj, idr) / cj)) if cj != 0.0 else 0.0 if len(membship) != a.shape[0] and len(membship[0]) != X.shape[1]: raise ValueError("'membship' must be a rectangular array where " "the number of rows in 'membship' equals the " "number of rows in 'a' and the number of " "columns in 'membship' equals the number of rows in 'X'.") return np.array([np.array([calc_dissim(b, X, membship[idj], idr) if b[idr] == t else 1.0 for idr, t in enumerate(val_a)]).sum(0) for idj, val_a in enumerate(a)])
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Ng et al.'s dissimilarity measure, as presented in Michael K. Ng, Mark Junjie Li, Joshua Zhexue Huang, and Zengyou He, "On the Impact of Dissimilarity Measure in k-Modes Clustering Algorithm", IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 29, No. 3, January, 2007 This function can potentially speed up training convergence. Note that membship must be a rectangular array such that the len(membship) = len(a) and len(membship[i]) = X.shape[1] In case of missing membship, this function reverts back to matching dissimilarity (e.g., when predicting).
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cdb19fe5448aba1bf501626694bb52e68eafab45
https://github.com/nicodv/kmodes/blob/cdb19fe5448aba1bf501626694bb52e68eafab45/kmodes/util/dissim.py#L20-L58
227,225
Bogdanp/dramatiq
dramatiq/results/backend.py
ResultBackend.store_result
def store_result(self, message, result: Result, ttl: int) -> None: """Store a result in the backend. Parameters: message(Message) result(object): Must be serializable. ttl(int): The maximum amount of time the result may be stored in the backend for. """ message_key = self.build_message_key(message) return self._store(message_key, result, ttl)
python
def store_result(self, message, result: Result, ttl: int) -> None: """Store a result in the backend. Parameters: message(Message) result(object): Must be serializable. ttl(int): The maximum amount of time the result may be stored in the backend for. """ message_key = self.build_message_key(message) return self._store(message_key, result, ttl)
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Store a result in the backend. Parameters: message(Message) result(object): Must be serializable. ttl(int): The maximum amount of time the result may be stored in the backend for.
[ "Store", "a", "result", "in", "the", "backend", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/results/backend.py#L98-L108
227,226
Bogdanp/dramatiq
dramatiq/results/backend.py
ResultBackend.build_message_key
def build_message_key(self, message) -> str: """Given a message, return its globally-unique key. Parameters: message(Message) Returns: str """ message_key = "%(namespace)s:%(queue_name)s:%(actor_name)s:%(message_id)s" % { "namespace": self.namespace, "queue_name": q_name(message.queue_name), "actor_name": message.actor_name, "message_id": message.message_id, } return hashlib.md5(message_key.encode("utf-8")).hexdigest()
python
def build_message_key(self, message) -> str: """Given a message, return its globally-unique key. Parameters: message(Message) Returns: str """ message_key = "%(namespace)s:%(queue_name)s:%(actor_name)s:%(message_id)s" % { "namespace": self.namespace, "queue_name": q_name(message.queue_name), "actor_name": message.actor_name, "message_id": message.message_id, } return hashlib.md5(message_key.encode("utf-8")).hexdigest()
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Given a message, return its globally-unique key. Parameters: message(Message) Returns: str
[ "Given", "a", "message", "return", "its", "globally", "-", "unique", "key", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/results/backend.py#L110-L125
227,227
Bogdanp/dramatiq
dramatiq/results/backend.py
ResultBackend._store
def _store(self, message_key: str, result: Result, ttl: int) -> None: # pragma: no cover """Store a result in the backend. Subclasses may implement this method if they want to use the default implementation of set_result. """ raise NotImplementedError("%(classname)r does not implement _store()" % { "classname": type(self).__name__, })
python
def _store(self, message_key: str, result: Result, ttl: int) -> None: # pragma: no cover """Store a result in the backend. Subclasses may implement this method if they want to use the default implementation of set_result. """ raise NotImplementedError("%(classname)r does not implement _store()" % { "classname": type(self).__name__, })
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Store a result in the backend. Subclasses may implement this method if they want to use the default implementation of set_result.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/results/backend.py#L136-L143
227,228
Bogdanp/dramatiq
dramatiq/rate_limits/rate_limiter.py
RateLimiter.acquire
def acquire(self, *, raise_on_failure=True): """Attempt to acquire a slot under this rate limiter. Parameters: raise_on_failure(bool): Whether or not failures should raise an exception. If this is false, the context manager will instead return a boolean value representing whether or not the rate limit slot was acquired. Returns: bool: Whether or not the slot could be acquired. """ acquired = False try: acquired = self._acquire() if raise_on_failure and not acquired: raise RateLimitExceeded("rate limit exceeded for key %(key)r" % vars(self)) yield acquired finally: if acquired: self._release()
python
def acquire(self, *, raise_on_failure=True): """Attempt to acquire a slot under this rate limiter. Parameters: raise_on_failure(bool): Whether or not failures should raise an exception. If this is false, the context manager will instead return a boolean value representing whether or not the rate limit slot was acquired. Returns: bool: Whether or not the slot could be acquired. """ acquired = False try: acquired = self._acquire() if raise_on_failure and not acquired: raise RateLimitExceeded("rate limit exceeded for key %(key)r" % vars(self)) yield acquired finally: if acquired: self._release()
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Attempt to acquire a slot under this rate limiter. Parameters: raise_on_failure(bool): Whether or not failures should raise an exception. If this is false, the context manager will instead return a boolean value representing whether or not the rate limit slot was acquired. Returns: bool: Whether or not the slot could be acquired.
[ "Attempt", "to", "acquire", "a", "slot", "under", "this", "rate", "limiter", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/rate_limits/rate_limiter.py#L56-L78
227,229
Bogdanp/dramatiq
dramatiq/middleware/prometheus.py
flock
def flock(path): """Attempt to acquire a POSIX file lock. """ with open(path, "w+") as lf: try: fcntl.flock(lf, fcntl.LOCK_EX | fcntl.LOCK_NB) acquired = True yield acquired except OSError: acquired = False yield acquired finally: if acquired: fcntl.flock(lf, fcntl.LOCK_UN)
python
def flock(path): """Attempt to acquire a POSIX file lock. """ with open(path, "w+") as lf: try: fcntl.flock(lf, fcntl.LOCK_EX | fcntl.LOCK_NB) acquired = True yield acquired except OSError: acquired = False yield acquired finally: if acquired: fcntl.flock(lf, fcntl.LOCK_UN)
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Attempt to acquire a POSIX file lock.
[ "Attempt", "to", "acquire", "a", "POSIX", "file", "lock", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/middleware/prometheus.py#L227-L242
227,230
Bogdanp/dramatiq
dramatiq/message.py
Message.copy
def copy(self, **attributes): """Create a copy of this message. """ updated_options = attributes.pop("options", {}) options = self.options.copy() options.update(updated_options) return self._replace(**attributes, options=options)
python
def copy(self, **attributes): """Create a copy of this message. """ updated_options = attributes.pop("options", {}) options = self.options.copy() options.update(updated_options) return self._replace(**attributes, options=options)
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Create a copy of this message.
[ "Create", "a", "copy", "of", "this", "message", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/message.py#L103-L109
227,231
Bogdanp/dramatiq
dramatiq/message.py
Message.get_result
def get_result(self, *, backend=None, block=False, timeout=None): """Get the result associated with this message from a result backend. Warning: If you use multiple result backends or brokers you should always pass the backend parameter. This method is only able to infer the result backend off of the default broker. Parameters: backend(ResultBackend): The result backend to use to get the result. If omitted, this method will try to find and use the result backend on the default broker instance. block(bool): Whether or not to block while waiting for a result. timeout(int): The maximum amount of time, in ms, to block while waiting for a result. Raises: RuntimeError: If there is no result backend on the default broker. ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: object: The result. """ if not backend: broker = get_broker() for middleware in broker.middleware: if isinstance(middleware, Results): backend = middleware.backend break else: raise RuntimeError("The default broker doesn't have a results backend.") return backend.get_result(self, block=block, timeout=timeout)
python
def get_result(self, *, backend=None, block=False, timeout=None): """Get the result associated with this message from a result backend. Warning: If you use multiple result backends or brokers you should always pass the backend parameter. This method is only able to infer the result backend off of the default broker. Parameters: backend(ResultBackend): The result backend to use to get the result. If omitted, this method will try to find and use the result backend on the default broker instance. block(bool): Whether or not to block while waiting for a result. timeout(int): The maximum amount of time, in ms, to block while waiting for a result. Raises: RuntimeError: If there is no result backend on the default broker. ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: object: The result. """ if not backend: broker = get_broker() for middleware in broker.middleware: if isinstance(middleware, Results): backend = middleware.backend break else: raise RuntimeError("The default broker doesn't have a results backend.") return backend.get_result(self, block=block, timeout=timeout)
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Get the result associated with this message from a result backend. Warning: If you use multiple result backends or brokers you should always pass the backend parameter. This method is only able to infer the result backend off of the default broker. Parameters: backend(ResultBackend): The result backend to use to get the result. If omitted, this method will try to find and use the result backend on the default broker instance. block(bool): Whether or not to block while waiting for a result. timeout(int): The maximum amount of time, in ms, to block while waiting for a result. Raises: RuntimeError: If there is no result backend on the default broker. ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: object: The result.
[ "Get", "the", "result", "associated", "with", "this", "message", "from", "a", "result", "backend", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/message.py#L111-L147
227,232
Bogdanp/dramatiq
dramatiq/common.py
compute_backoff
def compute_backoff(attempts, *, factor=5, jitter=True, max_backoff=2000, max_exponent=32): """Compute an exponential backoff value based on some number of attempts. Parameters: attempts(int): The number of attempts there have been so far. factor(int): The number of milliseconds to multiply each backoff by. max_backoff(int): The max number of milliseconds to backoff by. max_exponent(int): The maximum backoff exponent. Returns: tuple: The new number of attempts and the backoff in milliseconds. """ exponent = min(attempts, max_exponent) backoff = min(factor * 2 ** exponent, max_backoff) if jitter: backoff /= 2 backoff = int(backoff + uniform(0, backoff)) return attempts + 1, backoff
python
def compute_backoff(attempts, *, factor=5, jitter=True, max_backoff=2000, max_exponent=32): """Compute an exponential backoff value based on some number of attempts. Parameters: attempts(int): The number of attempts there have been so far. factor(int): The number of milliseconds to multiply each backoff by. max_backoff(int): The max number of milliseconds to backoff by. max_exponent(int): The maximum backoff exponent. Returns: tuple: The new number of attempts and the backoff in milliseconds. """ exponent = min(attempts, max_exponent) backoff = min(factor * 2 ** exponent, max_backoff) if jitter: backoff /= 2 backoff = int(backoff + uniform(0, backoff)) return attempts + 1, backoff
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Compute an exponential backoff value based on some number of attempts. Parameters: attempts(int): The number of attempts there have been so far. factor(int): The number of milliseconds to multiply each backoff by. max_backoff(int): The max number of milliseconds to backoff by. max_exponent(int): The maximum backoff exponent. Returns: tuple: The new number of attempts and the backoff in milliseconds.
[ "Compute", "an", "exponential", "backoff", "value", "based", "on", "some", "number", "of", "attempts", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/common.py#L24-L41
227,233
Bogdanp/dramatiq
dramatiq/common.py
join_all
def join_all(joinables, timeout): """Wait on a list of objects that can be joined with a total timeout represented by ``timeout``. Parameters: joinables(object): Objects with a join method. timeout(int): The total timeout in milliseconds. """ started, elapsed = current_millis(), 0 for ob in joinables: ob.join(timeout=timeout / 1000) elapsed = current_millis() - started timeout = max(0, timeout - elapsed)
python
def join_all(joinables, timeout): """Wait on a list of objects that can be joined with a total timeout represented by ``timeout``. Parameters: joinables(object): Objects with a join method. timeout(int): The total timeout in milliseconds. """ started, elapsed = current_millis(), 0 for ob in joinables: ob.join(timeout=timeout / 1000) elapsed = current_millis() - started timeout = max(0, timeout - elapsed)
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Wait on a list of objects that can be joined with a total timeout represented by ``timeout``. Parameters: joinables(object): Objects with a join method. timeout(int): The total timeout in milliseconds.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/common.py#L86-L98
227,234
Bogdanp/dramatiq
dramatiq/common.py
dq_name
def dq_name(queue_name): """Returns the delayed queue name for a given queue. If the given queue name already belongs to a delayed queue, then it is returned unchanged. """ if queue_name.endswith(".DQ"): return queue_name if queue_name.endswith(".XQ"): queue_name = queue_name[:-3] return queue_name + ".DQ"
python
def dq_name(queue_name): """Returns the delayed queue name for a given queue. If the given queue name already belongs to a delayed queue, then it is returned unchanged. """ if queue_name.endswith(".DQ"): return queue_name if queue_name.endswith(".XQ"): queue_name = queue_name[:-3] return queue_name + ".DQ"
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Returns the delayed queue name for a given queue. If the given queue name already belongs to a delayed queue, then it is returned unchanged.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/common.py#L109-L119
227,235
Bogdanp/dramatiq
dramatiq/common.py
xq_name
def xq_name(queue_name): """Returns the dead letter queue name for a given queue. If the given queue name belongs to a delayed queue, the dead letter queue name for the original queue is generated. """ if queue_name.endswith(".XQ"): return queue_name if queue_name.endswith(".DQ"): queue_name = queue_name[:-3] return queue_name + ".XQ"
python
def xq_name(queue_name): """Returns the dead letter queue name for a given queue. If the given queue name belongs to a delayed queue, the dead letter queue name for the original queue is generated. """ if queue_name.endswith(".XQ"): return queue_name if queue_name.endswith(".DQ"): queue_name = queue_name[:-3] return queue_name + ".XQ"
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Returns the dead letter queue name for a given queue. If the given queue name belongs to a delayed queue, the dead letter queue name for the original queue is generated.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/common.py#L122-L132
227,236
Bogdanp/dramatiq
dramatiq/broker.py
get_broker
def get_broker() -> "Broker": """Get the global broker instance. If no global broker is set, this initializes a RabbitmqBroker and returns it. Returns: Broker: The default Broker. """ global global_broker if global_broker is None: from .brokers.rabbitmq import RabbitmqBroker set_broker(RabbitmqBroker( host="127.0.0.1", port=5672, heartbeat=5, connection_attempts=5, blocked_connection_timeout=30, )) return global_broker
python
def get_broker() -> "Broker": """Get the global broker instance. If no global broker is set, this initializes a RabbitmqBroker and returns it. Returns: Broker: The default Broker. """ global global_broker if global_broker is None: from .brokers.rabbitmq import RabbitmqBroker set_broker(RabbitmqBroker( host="127.0.0.1", port=5672, heartbeat=5, connection_attempts=5, blocked_connection_timeout=30, )) return global_broker
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Get the global broker instance. If no global broker is set, this initializes a RabbitmqBroker and returns it. Returns: Broker: The default Broker.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/broker.py#L26-L44
227,237
Bogdanp/dramatiq
dramatiq/broker.py
Broker.add_middleware
def add_middleware(self, middleware, *, before=None, after=None): """Add a middleware object to this broker. The middleware is appended to the end of the middleware list by default. You can specify another middleware (by class) as a reference point for where the new middleware should be added. Parameters: middleware(Middleware): The middleware. before(type): Add this middleware before a specific one. after(type): Add this middleware after a specific one. Raises: ValueError: When either ``before`` or ``after`` refer to a middleware that hasn't been registered yet. """ assert not (before and after), \ "provide either 'before' or 'after', but not both" if before or after: for i, m in enumerate(self.middleware): # noqa if isinstance(m, before or after): break else: raise ValueError("Middleware %r not found" % (before or after)) if before: self.middleware.insert(i, middleware) else: self.middleware.insert(i + 1, middleware) else: self.middleware.append(middleware) self.actor_options |= middleware.actor_options for actor_name in self.get_declared_actors(): middleware.after_declare_actor(self, actor_name) for queue_name in self.get_declared_queues(): middleware.after_declare_queue(self, queue_name) for queue_name in self.get_declared_delay_queues(): middleware.after_declare_delay_queue(self, queue_name)
python
def add_middleware(self, middleware, *, before=None, after=None): """Add a middleware object to this broker. The middleware is appended to the end of the middleware list by default. You can specify another middleware (by class) as a reference point for where the new middleware should be added. Parameters: middleware(Middleware): The middleware. before(type): Add this middleware before a specific one. after(type): Add this middleware after a specific one. Raises: ValueError: When either ``before`` or ``after`` refer to a middleware that hasn't been registered yet. """ assert not (before and after), \ "provide either 'before' or 'after', but not both" if before or after: for i, m in enumerate(self.middleware): # noqa if isinstance(m, before or after): break else: raise ValueError("Middleware %r not found" % (before or after)) if before: self.middleware.insert(i, middleware) else: self.middleware.insert(i + 1, middleware) else: self.middleware.append(middleware) self.actor_options |= middleware.actor_options for actor_name in self.get_declared_actors(): middleware.after_declare_actor(self, actor_name) for queue_name in self.get_declared_queues(): middleware.after_declare_queue(self, queue_name) for queue_name in self.get_declared_delay_queues(): middleware.after_declare_delay_queue(self, queue_name)
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Add a middleware object to this broker. The middleware is appended to the end of the middleware list by default. You can specify another middleware (by class) as a reference point for where the new middleware should be added. Parameters: middleware(Middleware): The middleware. before(type): Add this middleware before a specific one. after(type): Add this middleware after a specific one. Raises: ValueError: When either ``before`` or ``after`` refer to a middleware that hasn't been registered yet.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/broker.py#L102-L144
227,238
Bogdanp/dramatiq
dramatiq/broker.py
Broker.declare_actor
def declare_actor(self, actor): # pragma: no cover """Declare a new actor on this broker. Declaring an Actor twice replaces the first actor with the second by name. Parameters: actor(Actor): The actor being declared. """ self.emit_before("declare_actor", actor) self.declare_queue(actor.queue_name) self.actors[actor.actor_name] = actor self.emit_after("declare_actor", actor)
python
def declare_actor(self, actor): # pragma: no cover """Declare a new actor on this broker. Declaring an Actor twice replaces the first actor with the second by name. Parameters: actor(Actor): The actor being declared. """ self.emit_before("declare_actor", actor) self.declare_queue(actor.queue_name) self.actors[actor.actor_name] = actor self.emit_after("declare_actor", actor)
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Declare a new actor on this broker. Declaring an Actor twice replaces the first actor with the second by name. Parameters: actor(Actor): The actor being declared.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/broker.py#L166-L176
227,239
Bogdanp/dramatiq
dramatiq/brokers/rabbitmq.py
URLRabbitmqBroker
def URLRabbitmqBroker(url, *, middleware=None): """Alias for the RabbitMQ broker that takes a connection URL as a positional argument. Parameters: url(str): A connection string. middleware(list[Middleware]): The middleware to add to this broker. """ warnings.warn( "Use RabbitmqBroker with the 'url' parameter instead of URLRabbitmqBroker.", DeprecationWarning, stacklevel=2, ) return RabbitmqBroker(url=url, middleware=middleware)
python
def URLRabbitmqBroker(url, *, middleware=None): """Alias for the RabbitMQ broker that takes a connection URL as a positional argument. Parameters: url(str): A connection string. middleware(list[Middleware]): The middleware to add to this broker. """ warnings.warn( "Use RabbitmqBroker with the 'url' parameter instead of URLRabbitmqBroker.", DeprecationWarning, stacklevel=2, ) return RabbitmqBroker(url=url, middleware=middleware)
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Alias for the RabbitMQ broker that takes a connection URL as a positional argument. Parameters: url(str): A connection string. middleware(list[Middleware]): The middleware to add to this broker.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/rabbitmq.py#L387-L400
227,240
Bogdanp/dramatiq
dramatiq/brokers/rabbitmq.py
RabbitmqBroker.close
def close(self): """Close all open RabbitMQ connections. """ # The main thread may keep connections open for a long time # w/o publishing heartbeats, which means that they'll end up # being closed by the time the broker is closed. When that # happens, pika logs a bunch of scary stuff so we want to # filter that out. logging_filter = _IgnoreScaryLogs() logging.getLogger("pika.adapters.base_connection").addFilter(logging_filter) logging.getLogger("pika.adapters.blocking_connection").addFilter(logging_filter) self.logger.debug("Closing channels and connections...") for channel_or_conn in chain(self.channels, self.connections): try: channel_or_conn.close() except pika.exceptions.AMQPError: pass except Exception: # pragma: no cover self.logger.debug("Encountered an error while closing %r.", channel_or_conn, exc_info=True) self.logger.debug("Channels and connections closed.")
python
def close(self): """Close all open RabbitMQ connections. """ # The main thread may keep connections open for a long time # w/o publishing heartbeats, which means that they'll end up # being closed by the time the broker is closed. When that # happens, pika logs a bunch of scary stuff so we want to # filter that out. logging_filter = _IgnoreScaryLogs() logging.getLogger("pika.adapters.base_connection").addFilter(logging_filter) logging.getLogger("pika.adapters.blocking_connection").addFilter(logging_filter) self.logger.debug("Closing channels and connections...") for channel_or_conn in chain(self.channels, self.connections): try: channel_or_conn.close() except pika.exceptions.AMQPError: pass except Exception: # pragma: no cover self.logger.debug("Encountered an error while closing %r.", channel_or_conn, exc_info=True) self.logger.debug("Channels and connections closed.")
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Close all open RabbitMQ connections.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/rabbitmq.py#L147-L168
227,241
Bogdanp/dramatiq
dramatiq/brokers/rabbitmq.py
RabbitmqBroker.declare_queue
def declare_queue(self, queue_name): """Declare a queue. Has no effect if a queue with the given name already exists. Parameters: queue_name(str): The name of the new queue. Raises: ConnectionClosed: If the underlying channel or connection has been closed. """ attempts = 1 while True: try: if queue_name not in self.queues: self.emit_before("declare_queue", queue_name) self._declare_queue(queue_name) self.queues.add(queue_name) self.emit_after("declare_queue", queue_name) delayed_name = dq_name(queue_name) self._declare_dq_queue(queue_name) self.delay_queues.add(delayed_name) self.emit_after("declare_delay_queue", delayed_name) self._declare_xq_queue(queue_name) break except (pika.exceptions.AMQPConnectionError, pika.exceptions.AMQPChannelError) as e: # pragma: no cover # Delete the channel and the connection so that the next # caller may initiate new ones of each. del self.channel del self.connection attempts += 1 if attempts > MAX_DECLARE_ATTEMPTS: raise ConnectionClosed(e) from None self.logger.debug( "Retrying declare due to closed connection. [%d/%d]", attempts, MAX_DECLARE_ATTEMPTS, )
python
def declare_queue(self, queue_name): """Declare a queue. Has no effect if a queue with the given name already exists. Parameters: queue_name(str): The name of the new queue. Raises: ConnectionClosed: If the underlying channel or connection has been closed. """ attempts = 1 while True: try: if queue_name not in self.queues: self.emit_before("declare_queue", queue_name) self._declare_queue(queue_name) self.queues.add(queue_name) self.emit_after("declare_queue", queue_name) delayed_name = dq_name(queue_name) self._declare_dq_queue(queue_name) self.delay_queues.add(delayed_name) self.emit_after("declare_delay_queue", delayed_name) self._declare_xq_queue(queue_name) break except (pika.exceptions.AMQPConnectionError, pika.exceptions.AMQPChannelError) as e: # pragma: no cover # Delete the channel and the connection so that the next # caller may initiate new ones of each. del self.channel del self.connection attempts += 1 if attempts > MAX_DECLARE_ATTEMPTS: raise ConnectionClosed(e) from None self.logger.debug( "Retrying declare due to closed connection. [%d/%d]", attempts, MAX_DECLARE_ATTEMPTS, )
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Declare a queue. Has no effect if a queue with the given name already exists. Parameters: queue_name(str): The name of the new queue. Raises: ConnectionClosed: If the underlying channel or connection has been closed.
[ "Declare", "a", "queue", ".", "Has", "no", "effect", "if", "a", "queue", "with", "the", "given", "name", "already", "exists", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/rabbitmq.py#L183-L224
227,242
Bogdanp/dramatiq
dramatiq/brokers/rabbitmq.py
RabbitmqBroker.get_queue_message_counts
def get_queue_message_counts(self, queue_name): """Get the number of messages in a queue. This method is only meant to be used in unit and integration tests. Parameters: queue_name(str): The queue whose message counts to get. Returns: tuple: A triple representing the number of messages in the queue, its delayed queue and its dead letter queue. """ queue_response = self._declare_queue(queue_name) dq_queue_response = self._declare_dq_queue(queue_name) xq_queue_response = self._declare_xq_queue(queue_name) return ( queue_response.method.message_count, dq_queue_response.method.message_count, xq_queue_response.method.message_count, )
python
def get_queue_message_counts(self, queue_name): """Get the number of messages in a queue. This method is only meant to be used in unit and integration tests. Parameters: queue_name(str): The queue whose message counts to get. Returns: tuple: A triple representing the number of messages in the queue, its delayed queue and its dead letter queue. """ queue_response = self._declare_queue(queue_name) dq_queue_response = self._declare_dq_queue(queue_name) xq_queue_response = self._declare_xq_queue(queue_name) return ( queue_response.method.message_count, dq_queue_response.method.message_count, xq_queue_response.method.message_count, )
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Get the number of messages in a queue. This method is only meant to be used in unit and integration tests. Parameters: queue_name(str): The queue whose message counts to get. Returns: tuple: A triple representing the number of messages in the queue, its delayed queue and its dead letter queue.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/rabbitmq.py#L318-L336
227,243
Bogdanp/dramatiq
dramatiq/rate_limits/barrier.py
Barrier.create
def create(self, parties): """Create the barrier for the given number of parties. Parameters: parties(int): The number of parties to wait for. Returns: bool: Whether or not the new barrier was successfully created. """ assert parties > 0, "parties must be a positive integer." return self.backend.add(self.key, parties, self.ttl)
python
def create(self, parties): """Create the barrier for the given number of parties. Parameters: parties(int): The number of parties to wait for. Returns: bool: Whether or not the new barrier was successfully created. """ assert parties > 0, "parties must be a positive integer." return self.backend.add(self.key, parties, self.ttl)
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Create the barrier for the given number of parties. Parameters: parties(int): The number of parties to wait for. Returns: bool: Whether or not the new barrier was successfully created.
[ "Create", "the", "barrier", "for", "the", "given", "number", "of", "parties", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/rate_limits/barrier.py#L50-L60
227,244
Bogdanp/dramatiq
dramatiq/rate_limits/barrier.py
Barrier.wait
def wait(self, *, block=True, timeout=None): """Signal that a party has reached the barrier. Warning: Barrier blocking is currently only supported by the stub and Redis backends. Warning: Re-using keys between blocking calls may lead to undefined behaviour. Make sure your barrier keys are always unique (use a UUID). Parameters: block(bool): Whether or not to block while waiting for the other parties. timeout(int): The maximum number of milliseconds to wait for the barrier to be cleared. Returns: bool: Whether or not the barrier has been reached by all parties. """ cleared = not self.backend.decr(self.key, 1, 1, self.ttl) if cleared: self.backend.wait_notify(self.key_events, self.ttl) return True if block: return self.backend.wait(self.key_events, timeout) return False
python
def wait(self, *, block=True, timeout=None): """Signal that a party has reached the barrier. Warning: Barrier blocking is currently only supported by the stub and Redis backends. Warning: Re-using keys between blocking calls may lead to undefined behaviour. Make sure your barrier keys are always unique (use a UUID). Parameters: block(bool): Whether or not to block while waiting for the other parties. timeout(int): The maximum number of milliseconds to wait for the barrier to be cleared. Returns: bool: Whether or not the barrier has been reached by all parties. """ cleared = not self.backend.decr(self.key, 1, 1, self.ttl) if cleared: self.backend.wait_notify(self.key_events, self.ttl) return True if block: return self.backend.wait(self.key_events, timeout) return False
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Signal that a party has reached the barrier. Warning: Barrier blocking is currently only supported by the stub and Redis backends. Warning: Re-using keys between blocking calls may lead to undefined behaviour. Make sure your barrier keys are always unique (use a UUID). Parameters: block(bool): Whether or not to block while waiting for the other parties. timeout(int): The maximum number of milliseconds to wait for the barrier to be cleared. Returns: bool: Whether or not the barrier has been reached by all parties.
[ "Signal", "that", "a", "party", "has", "reached", "the", "barrier", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/rate_limits/barrier.py#L62-L91
227,245
Bogdanp/dramatiq
dramatiq/middleware/threading.py
raise_thread_exception
def raise_thread_exception(thread_id, exception): """Raise an exception in a thread. Currently, this is only available on CPython. Note: This works by setting an async exception in the thread. This means that the exception will only get called the next time that thread acquires the GIL. Concretely, this means that this middleware can't cancel system calls. """ if current_platform == "CPython": _raise_thread_exception_cpython(thread_id, exception) else: message = "Setting thread exceptions (%s) is not supported for your current platform (%r)." exctype = (exception if inspect.isclass(exception) else type(exception)).__name__ logger.critical(message, exctype, current_platform)
python
def raise_thread_exception(thread_id, exception): """Raise an exception in a thread. Currently, this is only available on CPython. Note: This works by setting an async exception in the thread. This means that the exception will only get called the next time that thread acquires the GIL. Concretely, this means that this middleware can't cancel system calls. """ if current_platform == "CPython": _raise_thread_exception_cpython(thread_id, exception) else: message = "Setting thread exceptions (%s) is not supported for your current platform (%r)." exctype = (exception if inspect.isclass(exception) else type(exception)).__name__ logger.critical(message, exctype, current_platform)
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Raise an exception in a thread. Currently, this is only available on CPython. Note: This works by setting an async exception in the thread. This means that the exception will only get called the next time that thread acquires the GIL. Concretely, this means that this middleware can't cancel system calls.
[ "Raise", "an", "exception", "in", "a", "thread", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/middleware/threading.py#L43-L59
227,246
Bogdanp/dramatiq
dramatiq/watcher.py
setup_file_watcher
def setup_file_watcher(path, use_polling=False): """Sets up a background thread that watches for source changes and automatically sends SIGHUP to the current process whenever a file changes. """ if use_polling: observer_class = watchdog.observers.polling.PollingObserver else: observer_class = EVENTED_OBSERVER file_event_handler = _SourceChangesHandler(patterns=["*.py"]) file_watcher = observer_class() file_watcher.schedule(file_event_handler, path, recursive=True) file_watcher.start() return file_watcher
python
def setup_file_watcher(path, use_polling=False): """Sets up a background thread that watches for source changes and automatically sends SIGHUP to the current process whenever a file changes. """ if use_polling: observer_class = watchdog.observers.polling.PollingObserver else: observer_class = EVENTED_OBSERVER file_event_handler = _SourceChangesHandler(patterns=["*.py"]) file_watcher = observer_class() file_watcher.schedule(file_event_handler, path, recursive=True) file_watcher.start() return file_watcher
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Sets up a background thread that watches for source changes and automatically sends SIGHUP to the current process whenever a file changes.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/watcher.py#L16-L30
227,247
Bogdanp/dramatiq
dramatiq/brokers/stub.py
StubBroker.declare_queue
def declare_queue(self, queue_name): """Declare a queue. Has no effect if a queue with the given name has already been declared. Parameters: queue_name(str): The name of the new queue. """ if queue_name not in self.queues: self.emit_before("declare_queue", queue_name) self.queues[queue_name] = Queue() self.emit_after("declare_queue", queue_name) delayed_name = dq_name(queue_name) self.queues[delayed_name] = Queue() self.delay_queues.add(delayed_name) self.emit_after("declare_delay_queue", delayed_name)
python
def declare_queue(self, queue_name): """Declare a queue. Has no effect if a queue with the given name has already been declared. Parameters: queue_name(str): The name of the new queue. """ if queue_name not in self.queues: self.emit_before("declare_queue", queue_name) self.queues[queue_name] = Queue() self.emit_after("declare_queue", queue_name) delayed_name = dq_name(queue_name) self.queues[delayed_name] = Queue() self.delay_queues.add(delayed_name) self.emit_after("declare_delay_queue", delayed_name)
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Declare a queue. Has no effect if a queue with the given name has already been declared. Parameters: queue_name(str): The name of the new queue.
[ "Declare", "a", "queue", ".", "Has", "no", "effect", "if", "a", "queue", "with", "the", "given", "name", "has", "already", "been", "declared", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/stub.py#L66-L81
227,248
Bogdanp/dramatiq
dramatiq/brokers/stub.py
StubBroker.flush_all
def flush_all(self): """Drop all messages from all declared queues. """ for queue_name in chain(self.queues, self.delay_queues): self.flush(queue_name)
python
def flush_all(self): """Drop all messages from all declared queues. """ for queue_name in chain(self.queues, self.delay_queues): self.flush(queue_name)
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Drop all messages from all declared queues.
[ "Drop", "all", "messages", "from", "all", "declared", "queues", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/brokers/stub.py#L123-L127
227,249
Bogdanp/dramatiq
dramatiq/composition.py
pipeline.run
def run(self, *, delay=None): """Run this pipeline. Parameters: delay(int): The minimum amount of time, in milliseconds, the pipeline should be delayed by. Returns: pipeline: Itself. """ self.broker.enqueue(self.messages[0], delay=delay) return self
python
def run(self, *, delay=None): """Run this pipeline. Parameters: delay(int): The minimum amount of time, in milliseconds, the pipeline should be delayed by. Returns: pipeline: Itself. """ self.broker.enqueue(self.messages[0], delay=delay) return self
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Run this pipeline. Parameters: delay(int): The minimum amount of time, in milliseconds, the pipeline should be delayed by. Returns: pipeline: Itself.
[ "Run", "this", "pipeline", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/composition.py#L101-L112
227,250
Bogdanp/dramatiq
dramatiq/composition.py
pipeline.get_result
def get_result(self, *, block=False, timeout=None): """Get the result of this pipeline. Pipeline results are represented by the result of the last message in the chain. Parameters: block(bool): Whether or not to block until a result is set. timeout(int): The maximum amount of time, in ms, to wait for a result when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: object: The result. """ return self.messages[-1].get_result(block=block, timeout=timeout)
python
def get_result(self, *, block=False, timeout=None): """Get the result of this pipeline. Pipeline results are represented by the result of the last message in the chain. Parameters: block(bool): Whether or not to block until a result is set. timeout(int): The maximum amount of time, in ms, to wait for a result when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: object: The result. """ return self.messages[-1].get_result(block=block, timeout=timeout)
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Get the result of this pipeline. Pipeline results are represented by the result of the last message in the chain. Parameters: block(bool): Whether or not to block until a result is set. timeout(int): The maximum amount of time, in ms, to wait for a result when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: object: The result.
[ "Get", "the", "result", "of", "this", "pipeline", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/composition.py#L114-L132
227,251
Bogdanp/dramatiq
dramatiq/composition.py
pipeline.get_results
def get_results(self, *, block=False, timeout=None): """Get the results of each job in the pipeline. Parameters: block(bool): Whether or not to block until a result is set. timeout(int): The maximum amount of time, in ms, to wait for a result when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: A result generator. """ deadline = None if timeout: deadline = time.monotonic() + timeout / 1000 for message in self.messages: if deadline: timeout = max(0, int((deadline - time.monotonic()) * 1000)) yield message.get_result(block=block, timeout=timeout)
python
def get_results(self, *, block=False, timeout=None): """Get the results of each job in the pipeline. Parameters: block(bool): Whether or not to block until a result is set. timeout(int): The maximum amount of time, in ms, to wait for a result when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: A result generator. """ deadline = None if timeout: deadline = time.monotonic() + timeout / 1000 for message in self.messages: if deadline: timeout = max(0, int((deadline - time.monotonic()) * 1000)) yield message.get_result(block=block, timeout=timeout)
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Get the results of each job in the pipeline. Parameters: block(bool): Whether or not to block until a result is set. timeout(int): The maximum amount of time, in ms, to wait for a result when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the result isn't set. ResultTimeout: When waiting for a result times out. Returns: A result generator.
[ "Get", "the", "results", "of", "each", "job", "in", "the", "pipeline", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/composition.py#L134-L157
227,252
Bogdanp/dramatiq
dramatiq/composition.py
group.run
def run(self, *, delay=None): """Run the actors in this group. Parameters: delay(int): The minimum amount of time, in milliseconds, each message in the group should be delayed by. """ for child in self.children: if isinstance(child, (group, pipeline)): child.run(delay=delay) else: self.broker.enqueue(child, delay=delay) return self
python
def run(self, *, delay=None): """Run the actors in this group. Parameters: delay(int): The minimum amount of time, in milliseconds, each message in the group should be delayed by. """ for child in self.children: if isinstance(child, (group, pipeline)): child.run(delay=delay) else: self.broker.enqueue(child, delay=delay) return self
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Run the actors in this group. Parameters: delay(int): The minimum amount of time, in milliseconds, each message in the group should be delayed by.
[ "Run", "the", "actors", "in", "this", "group", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/composition.py#L220-L233
227,253
Bogdanp/dramatiq
dramatiq/composition.py
group.get_results
def get_results(self, *, block=False, timeout=None): """Get the results of each job in the group. Parameters: block(bool): Whether or not to block until the results are stored. timeout(int): The maximum amount of time, in milliseconds, to wait for results when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the results aren't set. ResultTimeout: When waiting for results times out. Returns: A result generator. """ deadline = None if timeout: deadline = time.monotonic() + timeout / 1000 for child in self.children: if deadline: timeout = max(0, int((deadline - time.monotonic()) * 1000)) if isinstance(child, group): yield list(child.get_results(block=block, timeout=timeout)) else: yield child.get_result(block=block, timeout=timeout)
python
def get_results(self, *, block=False, timeout=None): """Get the results of each job in the group. Parameters: block(bool): Whether or not to block until the results are stored. timeout(int): The maximum amount of time, in milliseconds, to wait for results when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the results aren't set. ResultTimeout: When waiting for results times out. Returns: A result generator. """ deadline = None if timeout: deadline = time.monotonic() + timeout / 1000 for child in self.children: if deadline: timeout = max(0, int((deadline - time.monotonic()) * 1000)) if isinstance(child, group): yield list(child.get_results(block=block, timeout=timeout)) else: yield child.get_result(block=block, timeout=timeout)
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Get the results of each job in the group. Parameters: block(bool): Whether or not to block until the results are stored. timeout(int): The maximum amount of time, in milliseconds, to wait for results when block is True. Defaults to 10 seconds. Raises: ResultMissing: When block is False and the results aren't set. ResultTimeout: When waiting for results times out. Returns: A result generator.
[ "Get", "the", "results", "of", "each", "job", "in", "the", "group", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/composition.py#L235-L262
227,254
Bogdanp/dramatiq
dramatiq/composition.py
group.wait
def wait(self, *, timeout=None): """Block until all the jobs in the group have finished or until the timeout expires. Parameters: timeout(int): The maximum amount of time, in ms, to wait. Defaults to 10 seconds. """ for _ in self.get_results(block=True, timeout=timeout): # pragma: no cover pass
python
def wait(self, *, timeout=None): """Block until all the jobs in the group have finished or until the timeout expires. Parameters: timeout(int): The maximum amount of time, in ms, to wait. Defaults to 10 seconds. """ for _ in self.get_results(block=True, timeout=timeout): # pragma: no cover pass
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Block until all the jobs in the group have finished or until the timeout expires. Parameters: timeout(int): The maximum amount of time, in ms, to wait. Defaults to 10 seconds.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/composition.py#L264-L273
227,255
Bogdanp/dramatiq
dramatiq/actor.py
actor
def actor(fn=None, *, actor_class=Actor, actor_name=None, queue_name="default", priority=0, broker=None, **options): """Declare an actor. Examples: >>> import dramatiq >>> @dramatiq.actor ... def add(x, y): ... print(x + y) ... >>> add Actor(<function add at 0x106c6d488>, queue_name='default', actor_name='add') >>> add(1, 2) 3 >>> add.send(1, 2) Message( queue_name='default', actor_name='add', args=(1, 2), kwargs={}, options={}, message_id='e0d27b45-7900-41da-bb97-553b8a081206', message_timestamp=1497862448685) Parameters: fn(callable): The function to wrap. actor_class(type): Type created by the decorator. Defaults to :class:`Actor` but can be any callable as long as it returns an actor and takes the same arguments as the :class:`Actor` class. actor_name(str): The name of the actor. queue_name(str): The name of the queue to use. priority(int): The actor's global priority. If two tasks have been pulled on a worker concurrently and one has a higher priority than the other then it will be processed first. Lower numbers represent higher priorities. broker(Broker): The broker to use with this actor. **options(dict): Arbitrary options that vary with the set of middleware that you use. See ``get_broker().actor_options``. Returns: Actor: The decorated function. """ def decorator(fn): nonlocal actor_name, broker actor_name = actor_name or fn.__name__ if not _queue_name_re.fullmatch(queue_name): raise ValueError( "Queue names must start with a letter or an underscore followed " "by any number of letters, digits, dashes or underscores." ) broker = broker or get_broker() invalid_options = set(options) - broker.actor_options if invalid_options: invalid_options_list = ", ".join(invalid_options) raise ValueError(( "The following actor options are undefined: %s. " "Did you forget to add a middleware to your Broker?" ) % invalid_options_list) return actor_class( fn, actor_name=actor_name, queue_name=queue_name, priority=priority, broker=broker, options=options, ) if fn is None: return decorator return decorator(fn)
python
def actor(fn=None, *, actor_class=Actor, actor_name=None, queue_name="default", priority=0, broker=None, **options): """Declare an actor. Examples: >>> import dramatiq >>> @dramatiq.actor ... def add(x, y): ... print(x + y) ... >>> add Actor(<function add at 0x106c6d488>, queue_name='default', actor_name='add') >>> add(1, 2) 3 >>> add.send(1, 2) Message( queue_name='default', actor_name='add', args=(1, 2), kwargs={}, options={}, message_id='e0d27b45-7900-41da-bb97-553b8a081206', message_timestamp=1497862448685) Parameters: fn(callable): The function to wrap. actor_class(type): Type created by the decorator. Defaults to :class:`Actor` but can be any callable as long as it returns an actor and takes the same arguments as the :class:`Actor` class. actor_name(str): The name of the actor. queue_name(str): The name of the queue to use. priority(int): The actor's global priority. If two tasks have been pulled on a worker concurrently and one has a higher priority than the other then it will be processed first. Lower numbers represent higher priorities. broker(Broker): The broker to use with this actor. **options(dict): Arbitrary options that vary with the set of middleware that you use. See ``get_broker().actor_options``. Returns: Actor: The decorated function. """ def decorator(fn): nonlocal actor_name, broker actor_name = actor_name or fn.__name__ if not _queue_name_re.fullmatch(queue_name): raise ValueError( "Queue names must start with a letter or an underscore followed " "by any number of letters, digits, dashes or underscores." ) broker = broker or get_broker() invalid_options = set(options) - broker.actor_options if invalid_options: invalid_options_list = ", ".join(invalid_options) raise ValueError(( "The following actor options are undefined: %s. " "Did you forget to add a middleware to your Broker?" ) % invalid_options_list) return actor_class( fn, actor_name=actor_name, queue_name=queue_name, priority=priority, broker=broker, options=options, ) if fn is None: return decorator return decorator(fn)
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Declare an actor. Examples: >>> import dramatiq >>> @dramatiq.actor ... def add(x, y): ... print(x + y) ... >>> add Actor(<function add at 0x106c6d488>, queue_name='default', actor_name='add') >>> add(1, 2) 3 >>> add.send(1, 2) Message( queue_name='default', actor_name='add', args=(1, 2), kwargs={}, options={}, message_id='e0d27b45-7900-41da-bb97-553b8a081206', message_timestamp=1497862448685) Parameters: fn(callable): The function to wrap. actor_class(type): Type created by the decorator. Defaults to :class:`Actor` but can be any callable as long as it returns an actor and takes the same arguments as the :class:`Actor` class. actor_name(str): The name of the actor. queue_name(str): The name of the queue to use. priority(int): The actor's global priority. If two tasks have been pulled on a worker concurrently and one has a higher priority than the other then it will be processed first. Lower numbers represent higher priorities. broker(Broker): The broker to use with this actor. **options(dict): Arbitrary options that vary with the set of middleware that you use. See ``get_broker().actor_options``. Returns: Actor: The decorated function.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/actor.py#L157-L225
227,256
Bogdanp/dramatiq
dramatiq/actor.py
Actor.message
def message(self, *args, **kwargs): """Build a message. This method is useful if you want to compose actors. See the actor composition documentation for details. Parameters: *args(tuple): Positional arguments to send to the actor. **kwargs(dict): Keyword arguments to send to the actor. Examples: >>> (add.message(1, 2) | add.message(3)) pipeline([add(1, 2), add(3)]) Returns: Message: A message that can be enqueued on a broker. """ return self.message_with_options(args=args, kwargs=kwargs)
python
def message(self, *args, **kwargs): """Build a message. This method is useful if you want to compose actors. See the actor composition documentation for details. Parameters: *args(tuple): Positional arguments to send to the actor. **kwargs(dict): Keyword arguments to send to the actor. Examples: >>> (add.message(1, 2) | add.message(3)) pipeline([add(1, 2), add(3)]) Returns: Message: A message that can be enqueued on a broker. """ return self.message_with_options(args=args, kwargs=kwargs)
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Build a message. This method is useful if you want to compose actors. See the actor composition documentation for details. Parameters: *args(tuple): Positional arguments to send to the actor. **kwargs(dict): Keyword arguments to send to the actor. Examples: >>> (add.message(1, 2) | add.message(3)) pipeline([add(1, 2), add(3)]) Returns: Message: A message that can be enqueued on a broker.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/actor.py#L54-L70
227,257
Bogdanp/dramatiq
dramatiq/actor.py
Actor.message_with_options
def message_with_options(self, *, args=None, kwargs=None, **options): """Build a message with an arbitray set of processing options. This method is useful if you want to compose actors. See the actor composition documentation for details. Parameters: args(tuple): Positional arguments that are passed to the actor. kwargs(dict): Keyword arguments that are passed to the actor. **options(dict): Arbitrary options that are passed to the broker and any registered middleware. Returns: Message: A message that can be enqueued on a broker. """ for name in ["on_failure", "on_success"]: callback = options.get(name) if isinstance(callback, Actor): options[name] = callback.actor_name elif not isinstance(callback, (type(None), str)): raise TypeError(name + " value must be an Actor") return Message( queue_name=self.queue_name, actor_name=self.actor_name, args=args or (), kwargs=kwargs or {}, options=options, )
python
def message_with_options(self, *, args=None, kwargs=None, **options): """Build a message with an arbitray set of processing options. This method is useful if you want to compose actors. See the actor composition documentation for details. Parameters: args(tuple): Positional arguments that are passed to the actor. kwargs(dict): Keyword arguments that are passed to the actor. **options(dict): Arbitrary options that are passed to the broker and any registered middleware. Returns: Message: A message that can be enqueued on a broker. """ for name in ["on_failure", "on_success"]: callback = options.get(name) if isinstance(callback, Actor): options[name] = callback.actor_name elif not isinstance(callback, (type(None), str)): raise TypeError(name + " value must be an Actor") return Message( queue_name=self.queue_name, actor_name=self.actor_name, args=args or (), kwargs=kwargs or {}, options=options, )
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Build a message with an arbitray set of processing options. This method is useful if you want to compose actors. See the actor composition documentation for details. Parameters: args(tuple): Positional arguments that are passed to the actor. kwargs(dict): Keyword arguments that are passed to the actor. **options(dict): Arbitrary options that are passed to the broker and any registered middleware. Returns: Message: A message that can be enqueued on a broker.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/actor.py#L72-L99
227,258
Bogdanp/dramatiq
dramatiq/actor.py
Actor.send
def send(self, *args, **kwargs): """Asynchronously send a message to this actor. Parameters: *args(tuple): Positional arguments to send to the actor. **kwargs(dict): Keyword arguments to send to the actor. Returns: Message: The enqueued message. """ return self.send_with_options(args=args, kwargs=kwargs)
python
def send(self, *args, **kwargs): """Asynchronously send a message to this actor. Parameters: *args(tuple): Positional arguments to send to the actor. **kwargs(dict): Keyword arguments to send to the actor. Returns: Message: The enqueued message. """ return self.send_with_options(args=args, kwargs=kwargs)
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Asynchronously send a message to this actor. Parameters: *args(tuple): Positional arguments to send to the actor. **kwargs(dict): Keyword arguments to send to the actor. Returns: Message: The enqueued message.
[ "Asynchronously", "send", "a", "message", "to", "this", "actor", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/actor.py#L101-L111
227,259
Bogdanp/dramatiq
dramatiq/actor.py
Actor.send_with_options
def send_with_options(self, *, args=None, kwargs=None, delay=None, **options): """Asynchronously send a message to this actor, along with an arbitrary set of processing options for the broker and middleware. Parameters: args(tuple): Positional arguments that are passed to the actor. kwargs(dict): Keyword arguments that are passed to the actor. delay(int): The minimum amount of time, in milliseconds, the message should be delayed by. **options(dict): Arbitrary options that are passed to the broker and any registered middleware. Returns: Message: The enqueued message. """ message = self.message_with_options(args=args, kwargs=kwargs, **options) return self.broker.enqueue(message, delay=delay)
python
def send_with_options(self, *, args=None, kwargs=None, delay=None, **options): """Asynchronously send a message to this actor, along with an arbitrary set of processing options for the broker and middleware. Parameters: args(tuple): Positional arguments that are passed to the actor. kwargs(dict): Keyword arguments that are passed to the actor. delay(int): The minimum amount of time, in milliseconds, the message should be delayed by. **options(dict): Arbitrary options that are passed to the broker and any registered middleware. Returns: Message: The enqueued message. """ message = self.message_with_options(args=args, kwargs=kwargs, **options) return self.broker.enqueue(message, delay=delay)
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Asynchronously send a message to this actor, along with an arbitrary set of processing options for the broker and middleware. Parameters: args(tuple): Positional arguments that are passed to the actor. kwargs(dict): Keyword arguments that are passed to the actor. delay(int): The minimum amount of time, in milliseconds, the message should be delayed by. **options(dict): Arbitrary options that are passed to the broker and any registered middleware. Returns: Message: The enqueued message.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/actor.py#L113-L130
227,260
Bogdanp/dramatiq
dramatiq/worker.py
Worker.start
def start(self): """Initialize the worker boot sequence and start up all the worker threads. """ self.broker.emit_before("worker_boot", self) worker_middleware = _WorkerMiddleware(self) self.broker.add_middleware(worker_middleware) for _ in range(self.worker_threads): self._add_worker() self.broker.emit_after("worker_boot", self)
python
def start(self): """Initialize the worker boot sequence and start up all the worker threads. """ self.broker.emit_before("worker_boot", self) worker_middleware = _WorkerMiddleware(self) self.broker.add_middleware(worker_middleware) for _ in range(self.worker_threads): self._add_worker() self.broker.emit_after("worker_boot", self)
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Initialize the worker boot sequence and start up all the worker threads.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L80-L91
227,261
Bogdanp/dramatiq
dramatiq/worker.py
Worker.pause
def pause(self): """Pauses all the worker threads. """ for child in chain(self.consumers.values(), self.workers): child.pause() for child in chain(self.consumers.values(), self.workers): child.paused_event.wait()
python
def pause(self): """Pauses all the worker threads. """ for child in chain(self.consumers.values(), self.workers): child.pause() for child in chain(self.consumers.values(), self.workers): child.paused_event.wait()
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Pauses all the worker threads.
[ "Pauses", "all", "the", "worker", "threads", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L93-L100
227,262
Bogdanp/dramatiq
dramatiq/worker.py
Worker.resume
def resume(self): """Resumes all the worker threads. """ for child in chain(self.consumers.values(), self.workers): child.resume()
python
def resume(self): """Resumes all the worker threads. """ for child in chain(self.consumers.values(), self.workers): child.resume()
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Resumes all the worker threads.
[ "Resumes", "all", "the", "worker", "threads", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L102-L106
227,263
Bogdanp/dramatiq
dramatiq/worker.py
Worker.stop
def stop(self, timeout=600000): """Gracefully stop the Worker and all of its consumers and workers. Parameters: timeout(int): The number of milliseconds to wait for everything to shut down. """ self.broker.emit_before("worker_shutdown", self) self.logger.info("Shutting down...") # Stop workers before consumers. The consumers are kept alive # during this process so that heartbeats keep being sent to # the broker while workers finish their current tasks. self.logger.debug("Stopping workers...") for thread in self.workers: thread.stop() join_all(self.workers, timeout) self.logger.debug("Workers stopped.") self.logger.debug("Stopping consumers...") for thread in self.consumers.values(): thread.stop() join_all(self.consumers.values(), timeout) self.logger.debug("Consumers stopped.") self.logger.debug("Requeueing in-memory messages...") messages_by_queue = defaultdict(list) for _, message in iter_queue(self.work_queue): messages_by_queue[message.queue_name].append(message) for queue_name, messages in messages_by_queue.items(): try: self.consumers[queue_name].requeue_messages(messages) except ConnectionError: self.logger.warning("Failed to requeue messages on queue %r.", queue_name, exc_info=True) self.logger.debug("Done requeueing in-progress messages.") self.logger.debug("Closing consumers...") for consumer in self.consumers.values(): consumer.close() self.logger.debug("Consumers closed.") self.broker.emit_after("worker_shutdown", self) self.logger.info("Worker has been shut down.")
python
def stop(self, timeout=600000): """Gracefully stop the Worker and all of its consumers and workers. Parameters: timeout(int): The number of milliseconds to wait for everything to shut down. """ self.broker.emit_before("worker_shutdown", self) self.logger.info("Shutting down...") # Stop workers before consumers. The consumers are kept alive # during this process so that heartbeats keep being sent to # the broker while workers finish their current tasks. self.logger.debug("Stopping workers...") for thread in self.workers: thread.stop() join_all(self.workers, timeout) self.logger.debug("Workers stopped.") self.logger.debug("Stopping consumers...") for thread in self.consumers.values(): thread.stop() join_all(self.consumers.values(), timeout) self.logger.debug("Consumers stopped.") self.logger.debug("Requeueing in-memory messages...") messages_by_queue = defaultdict(list) for _, message in iter_queue(self.work_queue): messages_by_queue[message.queue_name].append(message) for queue_name, messages in messages_by_queue.items(): try: self.consumers[queue_name].requeue_messages(messages) except ConnectionError: self.logger.warning("Failed to requeue messages on queue %r.", queue_name, exc_info=True) self.logger.debug("Done requeueing in-progress messages.") self.logger.debug("Closing consumers...") for consumer in self.consumers.values(): consumer.close() self.logger.debug("Consumers closed.") self.broker.emit_after("worker_shutdown", self) self.logger.info("Worker has been shut down.")
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Gracefully stop the Worker and all of its consumers and workers. Parameters: timeout(int): The number of milliseconds to wait for everything to shut down.
[ "Gracefully", "stop", "the", "Worker", "and", "all", "of", "its", "consumers", "and", "workers", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L108-L153
227,264
Bogdanp/dramatiq
dramatiq/worker.py
Worker.join
def join(self): """Wait for this worker to complete its work in progress. This method is useful when testing code. """ while True: for consumer in self.consumers.values(): consumer.delay_queue.join() self.work_queue.join() # If nothing got put on the delay queues while we were # joining on the work queue then it shoud be safe to exit. # This could still miss stuff but the chances are slim. for consumer in self.consumers.values(): if consumer.delay_queue.unfinished_tasks: break else: if self.work_queue.unfinished_tasks: continue return
python
def join(self): """Wait for this worker to complete its work in progress. This method is useful when testing code. """ while True: for consumer in self.consumers.values(): consumer.delay_queue.join() self.work_queue.join() # If nothing got put on the delay queues while we were # joining on the work queue then it shoud be safe to exit. # This could still miss stuff but the chances are slim. for consumer in self.consumers.values(): if consumer.delay_queue.unfinished_tasks: break else: if self.work_queue.unfinished_tasks: continue return
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Wait for this worker to complete its work in progress. This method is useful when testing code.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L155-L174
227,265
Bogdanp/dramatiq
dramatiq/worker.py
_ConsumerThread.handle_delayed_messages
def handle_delayed_messages(self): """Enqueue any delayed messages whose eta has passed. """ for eta, message in iter_queue(self.delay_queue): if eta > current_millis(): self.delay_queue.put((eta, message)) self.delay_queue.task_done() break queue_name = q_name(message.queue_name) new_message = message.copy(queue_name=queue_name) del new_message.options["eta"] self.broker.enqueue(new_message) self.post_process_message(message) self.delay_queue.task_done()
python
def handle_delayed_messages(self): """Enqueue any delayed messages whose eta has passed. """ for eta, message in iter_queue(self.delay_queue): if eta > current_millis(): self.delay_queue.put((eta, message)) self.delay_queue.task_done() break queue_name = q_name(message.queue_name) new_message = message.copy(queue_name=queue_name) del new_message.options["eta"] self.broker.enqueue(new_message) self.post_process_message(message) self.delay_queue.task_done()
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Enqueue any delayed messages whose eta has passed.
[ "Enqueue", "any", "delayed", "messages", "whose", "eta", "has", "passed", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L285-L300
227,266
Bogdanp/dramatiq
dramatiq/worker.py
_ConsumerThread.handle_message
def handle_message(self, message): """Handle a message received off of the underlying consumer. If the message has an eta, delay it. Otherwise, put it on the work queue. """ try: if "eta" in message.options: self.logger.debug("Pushing message %r onto delay queue.", message.message_id) self.broker.emit_before("delay_message", message) self.delay_queue.put((message.options.get("eta", 0), message)) else: actor = self.broker.get_actor(message.actor_name) self.logger.debug("Pushing message %r onto work queue.", message.message_id) self.work_queue.put((actor.priority, message)) except ActorNotFound: self.logger.error( "Received message for undefined actor %r. Moving it to the DLQ.", message.actor_name, exc_info=True, ) message.fail() self.post_process_message(message)
python
def handle_message(self, message): """Handle a message received off of the underlying consumer. If the message has an eta, delay it. Otherwise, put it on the work queue. """ try: if "eta" in message.options: self.logger.debug("Pushing message %r onto delay queue.", message.message_id) self.broker.emit_before("delay_message", message) self.delay_queue.put((message.options.get("eta", 0), message)) else: actor = self.broker.get_actor(message.actor_name) self.logger.debug("Pushing message %r onto work queue.", message.message_id) self.work_queue.put((actor.priority, message)) except ActorNotFound: self.logger.error( "Received message for undefined actor %r. Moving it to the DLQ.", message.actor_name, exc_info=True, ) message.fail() self.post_process_message(message)
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Handle a message received off of the underlying consumer. If the message has an eta, delay it. Otherwise, put it on the work queue.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L302-L323
227,267
Bogdanp/dramatiq
dramatiq/worker.py
_ConsumerThread.post_process_message
def post_process_message(self, message): """Called by worker threads whenever they're done processing individual messages, signaling that each message is ready to be acked or rejected. """ while True: try: if message.failed: self.logger.debug("Rejecting message %r.", message.message_id) self.broker.emit_before("nack", message) self.consumer.nack(message) self.broker.emit_after("nack", message) else: self.logger.debug("Acknowledging message %r.", message.message_id) self.broker.emit_before("ack", message) self.consumer.ack(message) self.broker.emit_after("ack", message) return # This applies to the Redis broker. The alternative to # constantly retrying would be to give up here and let the # message be re-processed after the worker is eventually # stopped or restarted, but we'd be doing the same work # twice in that case and the behaviour would surprise # users who don't deploy frequently. except ConnectionError as e: self.logger.warning( "Failed to post_process_message(%s) due to a connection error: %s\n" "The operation will be retried in %s seconds until the connection recovers.\n" "If you restart this worker before this operation succeeds, the message will be re-processed later.", message, e, POST_PROCESS_MESSAGE_RETRY_DELAY_SECS ) time.sleep(POST_PROCESS_MESSAGE_RETRY_DELAY_SECS) continue # Not much point retrying here so we bail. Most likely, # the message will be re-run after the worker is stopped # or restarted (because its ack lease will have expired). except Exception: # pragma: no cover self.logger.exception( "Unhandled error during post_process_message(%s). You've found a bug in Dramatiq. Please report it!\n" "Although your message has been processed, it will be processed again once this worker is restarted.", message, ) return
python
def post_process_message(self, message): """Called by worker threads whenever they're done processing individual messages, signaling that each message is ready to be acked or rejected. """ while True: try: if message.failed: self.logger.debug("Rejecting message %r.", message.message_id) self.broker.emit_before("nack", message) self.consumer.nack(message) self.broker.emit_after("nack", message) else: self.logger.debug("Acknowledging message %r.", message.message_id) self.broker.emit_before("ack", message) self.consumer.ack(message) self.broker.emit_after("ack", message) return # This applies to the Redis broker. The alternative to # constantly retrying would be to give up here and let the # message be re-processed after the worker is eventually # stopped or restarted, but we'd be doing the same work # twice in that case and the behaviour would surprise # users who don't deploy frequently. except ConnectionError as e: self.logger.warning( "Failed to post_process_message(%s) due to a connection error: %s\n" "The operation will be retried in %s seconds until the connection recovers.\n" "If you restart this worker before this operation succeeds, the message will be re-processed later.", message, e, POST_PROCESS_MESSAGE_RETRY_DELAY_SECS ) time.sleep(POST_PROCESS_MESSAGE_RETRY_DELAY_SECS) continue # Not much point retrying here so we bail. Most likely, # the message will be re-run after the worker is stopped # or restarted (because its ack lease will have expired). except Exception: # pragma: no cover self.logger.exception( "Unhandled error during post_process_message(%s). You've found a bug in Dramatiq. Please report it!\n" "Although your message has been processed, it will be processed again once this worker is restarted.", message, ) return
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Called by worker threads whenever they're done processing individual messages, signaling that each message is ready to be acked or rejected.
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L325-L373
227,268
Bogdanp/dramatiq
dramatiq/worker.py
_ConsumerThread.close
def close(self): """Close this consumer thread and its underlying connection. """ try: if self.consumer: self.requeue_messages(m for _, m in iter_queue(self.delay_queue)) self.consumer.close() except ConnectionError: pass
python
def close(self): """Close this consumer thread and its underlying connection. """ try: if self.consumer: self.requeue_messages(m for _, m in iter_queue(self.delay_queue)) self.consumer.close() except ConnectionError: pass
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Close this consumer thread and its underlying connection.
[ "Close", "this", "consumer", "thread", "and", "its", "underlying", "connection", "." ]
a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L403-L411
227,269
Bogdanp/dramatiq
dramatiq/worker.py
_WorkerThread.process_message
def process_message(self, message): """Process a message pulled off of the work queue then push it back to its associated consumer for post processing. Parameters: message(MessageProxy) """ try: self.logger.debug("Received message %s with id %r.", message, message.message_id) self.broker.emit_before("process_message", message) res = None if not message.failed: actor = self.broker.get_actor(message.actor_name) res = actor(*message.args, **message.kwargs) self.broker.emit_after("process_message", message, result=res) except SkipMessage: self.logger.warning("Message %s was skipped.", message) self.broker.emit_after("skip_message", message) except BaseException as e: # Stuff the exception into the message [proxy] so that it # may be used by the stub broker to provide a nicer # testing experience. message.stuff_exception(e) if isinstance(e, RateLimitExceeded): self.logger.warning("Rate limit exceeded in message %s: %s.", message, e) else: self.logger.warning("Failed to process message %s with unhandled exception.", message, exc_info=True) self.broker.emit_after("process_message", message, exception=e) finally: # NOTE: There is no race here as any message that was # processed must have come off of a consumer. Therefore, # there has to be a consumer for that message's queue so # this is safe. Probably. self.consumers[message.queue_name].post_process_message(message) self.work_queue.task_done()
python
def process_message(self, message): """Process a message pulled off of the work queue then push it back to its associated consumer for post processing. Parameters: message(MessageProxy) """ try: self.logger.debug("Received message %s with id %r.", message, message.message_id) self.broker.emit_before("process_message", message) res = None if not message.failed: actor = self.broker.get_actor(message.actor_name) res = actor(*message.args, **message.kwargs) self.broker.emit_after("process_message", message, result=res) except SkipMessage: self.logger.warning("Message %s was skipped.", message) self.broker.emit_after("skip_message", message) except BaseException as e: # Stuff the exception into the message [proxy] so that it # may be used by the stub broker to provide a nicer # testing experience. message.stuff_exception(e) if isinstance(e, RateLimitExceeded): self.logger.warning("Rate limit exceeded in message %s: %s.", message, e) else: self.logger.warning("Failed to process message %s with unhandled exception.", message, exc_info=True) self.broker.emit_after("process_message", message, exception=e) finally: # NOTE: There is no race here as any message that was # processed must have come off of a consumer. Therefore, # there has to be a consumer for that message's queue so # this is safe. Probably. self.consumers[message.queue_name].post_process_message(message) self.work_queue.task_done()
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Process a message pulled off of the work queue then push it back to its associated consumer for post processing. Parameters: message(MessageProxy)
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a8cc2728478e794952a5a50c3fb19ec455fe91b6
https://github.com/Bogdanp/dramatiq/blob/a8cc2728478e794952a5a50c3fb19ec455fe91b6/dramatiq/worker.py#L456-L497
227,270
github/octodns
octodns/manager.py
Manager.compare
def compare(self, a, b, zone): ''' Compare zone data between 2 sources. Note: only things supported by both sources will be considered ''' self.log.info('compare: a=%s, b=%s, zone=%s', a, b, zone) try: a = [self.providers[source] for source in a] b = [self.providers[source] for source in b] except KeyError as e: raise Exception('Unknown source: {}'.format(e.args[0])) sub_zones = self.configured_sub_zones(zone) za = Zone(zone, sub_zones) for source in a: source.populate(za) zb = Zone(zone, sub_zones) for source in b: source.populate(zb) return zb.changes(za, _AggregateTarget(a + b))
python
def compare(self, a, b, zone): ''' Compare zone data between 2 sources. Note: only things supported by both sources will be considered ''' self.log.info('compare: a=%s, b=%s, zone=%s', a, b, zone) try: a = [self.providers[source] for source in a] b = [self.providers[source] for source in b] except KeyError as e: raise Exception('Unknown source: {}'.format(e.args[0])) sub_zones = self.configured_sub_zones(zone) za = Zone(zone, sub_zones) for source in a: source.populate(za) zb = Zone(zone, sub_zones) for source in b: source.populate(zb) return zb.changes(za, _AggregateTarget(a + b))
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Compare zone data between 2 sources. Note: only things supported by both sources will be considered
[ "Compare", "zone", "data", "between", "2", "sources", "." ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/manager.py#L335-L358
227,271
github/octodns
octodns/manager.py
Manager.dump
def dump(self, zone, output_dir, lenient, split, source, *sources): ''' Dump zone data from the specified source ''' self.log.info('dump: zone=%s, sources=%s', zone, sources) # We broke out source to force at least one to be passed, add it to any # others we got. sources = [source] + list(sources) try: sources = [self.providers[s] for s in sources] except KeyError as e: raise Exception('Unknown source: {}'.format(e.args[0])) clz = YamlProvider if split: clz = SplitYamlProvider target = clz('dump', output_dir) zone = Zone(zone, self.configured_sub_zones(zone)) for source in sources: source.populate(zone, lenient=lenient) plan = target.plan(zone) if plan is None: plan = Plan(zone, zone, [], False) target.apply(plan)
python
def dump(self, zone, output_dir, lenient, split, source, *sources): ''' Dump zone data from the specified source ''' self.log.info('dump: zone=%s, sources=%s', zone, sources) # We broke out source to force at least one to be passed, add it to any # others we got. sources = [source] + list(sources) try: sources = [self.providers[s] for s in sources] except KeyError as e: raise Exception('Unknown source: {}'.format(e.args[0])) clz = YamlProvider if split: clz = SplitYamlProvider target = clz('dump', output_dir) zone = Zone(zone, self.configured_sub_zones(zone)) for source in sources: source.populate(zone, lenient=lenient) plan = target.plan(zone) if plan is None: plan = Plan(zone, zone, [], False) target.apply(plan)
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Dump zone data from the specified source
[ "Dump", "zone", "data", "from", "the", "specified", "source" ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/manager.py#L360-L387
227,272
github/octodns
octodns/provider/dyn.py
_CachingDynZone.flush_zone
def flush_zone(cls, zone_name): '''Flushes the zone cache, if there is one''' cls.log.debug('flush_zone: zone_name=%s', zone_name) try: del cls._cache[zone_name] except KeyError: pass
python
def flush_zone(cls, zone_name): '''Flushes the zone cache, if there is one''' cls.log.debug('flush_zone: zone_name=%s', zone_name) try: del cls._cache[zone_name] except KeyError: pass
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Flushes the zone cache, if there is one
[ "Flushes", "the", "zone", "cache", "if", "there", "is", "one" ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/dyn.py#L156-L162
227,273
github/octodns
octodns/provider/azuredns.py
AzureProvider._check_zone
def _check_zone(self, name, create=False): '''Checks whether a zone specified in a source exist in Azure server. Note that Azure zones omit end '.' eg: contoso.com vs contoso.com. Returns the name if it exists. :param name: Name of a zone to checks :type name: str :param create: If True, creates the zone of that name. :type create: bool :type return: str or None ''' self.log.debug('_check_zone: name=%s', name) try: if name in self._azure_zones: return name self._dns_client.zones.get(self._resource_group, name) self._azure_zones.add(name) return name except CloudError as err: msg = 'The Resource \'Microsoft.Network/dnszones/{}\''.format(name) msg += ' under resource group \'{}\''.format(self._resource_group) msg += ' was not found.' if msg == err.message: # Then the only error is that the zone doesn't currently exist if create: self.log.debug('_check_zone:no matching zone; creating %s', name) create_zone = self._dns_client.zones.create_or_update create_zone(self._resource_group, name, Zone(location='global')) return name else: return raise
python
def _check_zone(self, name, create=False): '''Checks whether a zone specified in a source exist in Azure server. Note that Azure zones omit end '.' eg: contoso.com vs contoso.com. Returns the name if it exists. :param name: Name of a zone to checks :type name: str :param create: If True, creates the zone of that name. :type create: bool :type return: str or None ''' self.log.debug('_check_zone: name=%s', name) try: if name in self._azure_zones: return name self._dns_client.zones.get(self._resource_group, name) self._azure_zones.add(name) return name except CloudError as err: msg = 'The Resource \'Microsoft.Network/dnszones/{}\''.format(name) msg += ' under resource group \'{}\''.format(self._resource_group) msg += ' was not found.' if msg == err.message: # Then the only error is that the zone doesn't currently exist if create: self.log.debug('_check_zone:no matching zone; creating %s', name) create_zone = self._dns_client.zones.create_or_update create_zone(self._resource_group, name, Zone(location='global')) return name else: return raise
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Checks whether a zone specified in a source exist in Azure server. Note that Azure zones omit end '.' eg: contoso.com vs contoso.com. Returns the name if it exists. :param name: Name of a zone to checks :type name: str :param create: If True, creates the zone of that name. :type create: bool :type return: str or None
[ "Checks", "whether", "a", "zone", "specified", "in", "a", "source", "exist", "in", "Azure", "server", "." ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/azuredns.py#L306-L341
227,274
github/octodns
octodns/provider/azuredns.py
AzureProvider._apply_Create
def _apply_Create(self, change): '''A record from change must be created. :param change: a change object :type change: octodns.record.Change :type return: void ''' ar = _AzureRecord(self._resource_group, change.new) create = self._dns_client.record_sets.create_or_update create(resource_group_name=ar.resource_group, zone_name=ar.zone_name, relative_record_set_name=ar.relative_record_set_name, record_type=ar.record_type, parameters=ar.params) self.log.debug('* Success Create/Update: {}'.format(ar))
python
def _apply_Create(self, change): '''A record from change must be created. :param change: a change object :type change: octodns.record.Change :type return: void ''' ar = _AzureRecord(self._resource_group, change.new) create = self._dns_client.record_sets.create_or_update create(resource_group_name=ar.resource_group, zone_name=ar.zone_name, relative_record_set_name=ar.relative_record_set_name, record_type=ar.record_type, parameters=ar.params) self.log.debug('* Success Create/Update: {}'.format(ar))
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A record from change must be created. :param change: a change object :type change: octodns.record.Change :type return: void
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65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/azuredns.py#L450-L467
227,275
github/octodns
octodns/provider/base.py
BaseProvider.apply
def apply(self, plan): ''' Submits actual planned changes to the provider. Returns the number of changes made ''' if self.apply_disabled: self.log.info('apply: disabled') return 0 self.log.info('apply: making changes') self._apply(plan) return len(plan.changes)
python
def apply(self, plan): ''' Submits actual planned changes to the provider. Returns the number of changes made ''' if self.apply_disabled: self.log.info('apply: disabled') return 0 self.log.info('apply: making changes') self._apply(plan) return len(plan.changes)
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Submits actual planned changes to the provider. Returns the number of changes made
[ "Submits", "actual", "planned", "changes", "to", "the", "provider", ".", "Returns", "the", "number", "of", "changes", "made" ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/base.py#L83-L94
227,276
github/octodns
octodns/provider/ovh.py
OvhProvider._is_valid_dkim
def _is_valid_dkim(self, value): """Check if value is a valid DKIM""" validator_dict = {'h': lambda val: val in ['sha1', 'sha256'], 's': lambda val: val in ['*', 'email'], 't': lambda val: val in ['y', 's'], 'v': lambda val: val == 'DKIM1', 'k': lambda val: val == 'rsa', 'n': lambda _: True, 'g': lambda _: True} splitted = value.split('\\;') found_key = False for splitted_value in splitted: sub_split = map(lambda x: x.strip(), splitted_value.split("=", 1)) if len(sub_split) < 2: return False key, value = sub_split[0], sub_split[1] if key == "p": is_valid_key = self._is_valid_dkim_key(value) if not is_valid_key: return False found_key = True else: is_valid_key = validator_dict.get(key, lambda _: False)(value) if not is_valid_key: return False return found_key
python
def _is_valid_dkim(self, value): """Check if value is a valid DKIM""" validator_dict = {'h': lambda val: val in ['sha1', 'sha256'], 's': lambda val: val in ['*', 'email'], 't': lambda val: val in ['y', 's'], 'v': lambda val: val == 'DKIM1', 'k': lambda val: val == 'rsa', 'n': lambda _: True, 'g': lambda _: True} splitted = value.split('\\;') found_key = False for splitted_value in splitted: sub_split = map(lambda x: x.strip(), splitted_value.split("=", 1)) if len(sub_split) < 2: return False key, value = sub_split[0], sub_split[1] if key == "p": is_valid_key = self._is_valid_dkim_key(value) if not is_valid_key: return False found_key = True else: is_valid_key = validator_dict.get(key, lambda _: False)(value) if not is_valid_key: return False return found_key
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Check if value is a valid DKIM
[ "Check", "if", "value", "is", "a", "valid", "DKIM" ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/ovh.py#L315-L341
227,277
github/octodns
octodns/provider/googlecloud.py
GoogleCloudProvider._get_gcloud_records
def _get_gcloud_records(self, gcloud_zone, page_token=None): """ Generator function which yields ResourceRecordSet for the managed gcloud zone, until there are no more records to pull. :param gcloud_zone: zone to pull records from :type gcloud_zone: google.cloud.dns.ManagedZone :param page_token: page token for the page to get :return: a resource record set :type return: google.cloud.dns.ResourceRecordSet """ gcloud_iterator = gcloud_zone.list_resource_record_sets( page_token=page_token) for gcloud_record in gcloud_iterator: yield gcloud_record # This is to get results which may be on a "paged" page. # (if more than max_results) entries. if gcloud_iterator.next_page_token: for gcloud_record in self._get_gcloud_records( gcloud_zone, gcloud_iterator.next_page_token): # yield from is in python 3 only. yield gcloud_record
python
def _get_gcloud_records(self, gcloud_zone, page_token=None): """ Generator function which yields ResourceRecordSet for the managed gcloud zone, until there are no more records to pull. :param gcloud_zone: zone to pull records from :type gcloud_zone: google.cloud.dns.ManagedZone :param page_token: page token for the page to get :return: a resource record set :type return: google.cloud.dns.ResourceRecordSet """ gcloud_iterator = gcloud_zone.list_resource_record_sets( page_token=page_token) for gcloud_record in gcloud_iterator: yield gcloud_record # This is to get results which may be on a "paged" page. # (if more than max_results) entries. if gcloud_iterator.next_page_token: for gcloud_record in self._get_gcloud_records( gcloud_zone, gcloud_iterator.next_page_token): # yield from is in python 3 only. yield gcloud_record
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Generator function which yields ResourceRecordSet for the managed gcloud zone, until there are no more records to pull. :param gcloud_zone: zone to pull records from :type gcloud_zone: google.cloud.dns.ManagedZone :param page_token: page token for the page to get :return: a resource record set :type return: google.cloud.dns.ResourceRecordSet
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65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/googlecloud.py#L150-L171
227,278
github/octodns
octodns/provider/googlecloud.py
GoogleCloudProvider._get_cloud_zones
def _get_cloud_zones(self, page_token=None): """Load all ManagedZones into the self._gcloud_zones dict which is mapped with the dns_name as key. :return: void """ gcloud_zones = self.gcloud_client.list_zones(page_token=page_token) for gcloud_zone in gcloud_zones: self._gcloud_zones[gcloud_zone.dns_name] = gcloud_zone if gcloud_zones.next_page_token: self._get_cloud_zones(gcloud_zones.next_page_token)
python
def _get_cloud_zones(self, page_token=None): """Load all ManagedZones into the self._gcloud_zones dict which is mapped with the dns_name as key. :return: void """ gcloud_zones = self.gcloud_client.list_zones(page_token=page_token) for gcloud_zone in gcloud_zones: self._gcloud_zones[gcloud_zone.dns_name] = gcloud_zone if gcloud_zones.next_page_token: self._get_cloud_zones(gcloud_zones.next_page_token)
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Load all ManagedZones into the self._gcloud_zones dict which is mapped with the dns_name as key. :return: void
[ "Load", "all", "ManagedZones", "into", "the", "self", ".", "_gcloud_zones", "dict", "which", "is", "mapped", "with", "the", "dns_name", "as", "key", "." ]
65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6
https://github.com/github/octodns/blob/65ee60491e22e6bb0a2aa08f7069c6ecf6c3fee6/octodns/provider/googlecloud.py#L173-L185
227,279
nabla-c0d3/sslyze
sslyze/plugins/robot_plugin.py
RobotTlsRecordPayloads.get_client_key_exchange_record
def get_client_key_exchange_record( cls, robot_payload_enum: RobotPmsPaddingPayloadEnum, tls_version: TlsVersionEnum, modulus: int, exponent: int ) -> TlsRsaClientKeyExchangeRecord: """A client key exchange record with a hardcoded pre_master_secret, and a valid or invalid padding. """ pms_padding = cls._compute_pms_padding(modulus) tls_version_hex = binascii.b2a_hex(TlsRecordTlsVersionBytes[tls_version.name].value).decode('ascii') pms_with_padding_payload = cls._CKE_PAYLOADS_HEX[robot_payload_enum] final_pms = pms_with_padding_payload.format( pms_padding=pms_padding, tls_version=tls_version_hex, pms=cls._PMS_HEX ) cke_robot_record = TlsRsaClientKeyExchangeRecord.from_parameters( tls_version, exponent, modulus, int(final_pms, 16) ) return cke_robot_record
python
def get_client_key_exchange_record( cls, robot_payload_enum: RobotPmsPaddingPayloadEnum, tls_version: TlsVersionEnum, modulus: int, exponent: int ) -> TlsRsaClientKeyExchangeRecord: """A client key exchange record with a hardcoded pre_master_secret, and a valid or invalid padding. """ pms_padding = cls._compute_pms_padding(modulus) tls_version_hex = binascii.b2a_hex(TlsRecordTlsVersionBytes[tls_version.name].value).decode('ascii') pms_with_padding_payload = cls._CKE_PAYLOADS_HEX[robot_payload_enum] final_pms = pms_with_padding_payload.format( pms_padding=pms_padding, tls_version=tls_version_hex, pms=cls._PMS_HEX ) cke_robot_record = TlsRsaClientKeyExchangeRecord.from_parameters( tls_version, exponent, modulus, int(final_pms, 16) ) return cke_robot_record
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A client key exchange record with a hardcoded pre_master_secret, and a valid or invalid padding.
[ "A", "client", "key", "exchange", "record", "with", "a", "hardcoded", "pre_master_secret", "and", "a", "valid", "or", "invalid", "padding", "." ]
0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/robot_plugin.py#L71-L90
227,280
nabla-c0d3/sslyze
sslyze/plugins/robot_plugin.py
RobotTlsRecordPayloads.get_finished_record_bytes
def get_finished_record_bytes(cls, tls_version: TlsVersionEnum) -> bytes: """The Finished TLS record corresponding to the hardcoded PMS used in the Client Key Exchange record. """ # TODO(AD): The ROBOT poc script uses the same Finished record for all possible client hello (default, GCM, # etc.); as the Finished record contains a hashes of all previous records, it will be wrong and will cause # servers to send a TLS Alert 20 # Here just like in the poc script, the Finished message does not match the Client Hello we sent return b'\x16' + TlsRecordTlsVersionBytes[tls_version.name].value + cls._FINISHED_RECORD
python
def get_finished_record_bytes(cls, tls_version: TlsVersionEnum) -> bytes: """The Finished TLS record corresponding to the hardcoded PMS used in the Client Key Exchange record. """ # TODO(AD): The ROBOT poc script uses the same Finished record for all possible client hello (default, GCM, # etc.); as the Finished record contains a hashes of all previous records, it will be wrong and will cause # servers to send a TLS Alert 20 # Here just like in the poc script, the Finished message does not match the Client Hello we sent return b'\x16' + TlsRecordTlsVersionBytes[tls_version.name].value + cls._FINISHED_RECORD
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The Finished TLS record corresponding to the hardcoded PMS used in the Client Key Exchange record.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/robot_plugin.py#L109-L116
227,281
nabla-c0d3/sslyze
sslyze/plugins/robot_plugin.py
RobotServerResponsesAnalyzer.compute_result_enum
def compute_result_enum(self) -> RobotScanResultEnum: """Look at the server's response to each ROBOT payload and return the conclusion of the analysis. """ # Ensure the results were consistent for payload_enum, server_responses in self._payload_responses.items(): # We ran the check twice per payload and the two responses should be the same if server_responses[0] != server_responses[1]: return RobotScanResultEnum.UNKNOWN_INCONSISTENT_RESULTS # Check if the server acts as an oracle by checking if the server replied differently to the payloads if len(set([server_responses[0] for server_responses in self._payload_responses.values()])) == 1: # All server responses were identical - no oracle return RobotScanResultEnum.NOT_VULNERABLE_NO_ORACLE # All server responses were NOT identical, server is vulnerable # Check to see if it is a weak oracle response_1 = self._payload_responses[RobotPmsPaddingPayloadEnum.WRONG_FIRST_TWO_BYTES][0] response_2 = self._payload_responses[RobotPmsPaddingPayloadEnum.WRONG_POSITION_00][0] response_3 = self._payload_responses[RobotPmsPaddingPayloadEnum.NO_00_IN_THE_MIDDLE][0] # From the original script: # If the response to the invalid PKCS#1 request (oracle_bad1) is equal to both # requests starting with 0002, we have a weak oracle. This is because the only # case where we can distinguish valid from invalid requests is when we send # correctly formatted PKCS#1 message with 0x00 on a correct position. This # makes our oracle weak if response_1 == response_2 == response_3: return RobotScanResultEnum.VULNERABLE_WEAK_ORACLE else: return RobotScanResultEnum.VULNERABLE_STRONG_ORACLE
python
def compute_result_enum(self) -> RobotScanResultEnum: """Look at the server's response to each ROBOT payload and return the conclusion of the analysis. """ # Ensure the results were consistent for payload_enum, server_responses in self._payload_responses.items(): # We ran the check twice per payload and the two responses should be the same if server_responses[0] != server_responses[1]: return RobotScanResultEnum.UNKNOWN_INCONSISTENT_RESULTS # Check if the server acts as an oracle by checking if the server replied differently to the payloads if len(set([server_responses[0] for server_responses in self._payload_responses.values()])) == 1: # All server responses were identical - no oracle return RobotScanResultEnum.NOT_VULNERABLE_NO_ORACLE # All server responses were NOT identical, server is vulnerable # Check to see if it is a weak oracle response_1 = self._payload_responses[RobotPmsPaddingPayloadEnum.WRONG_FIRST_TWO_BYTES][0] response_2 = self._payload_responses[RobotPmsPaddingPayloadEnum.WRONG_POSITION_00][0] response_3 = self._payload_responses[RobotPmsPaddingPayloadEnum.NO_00_IN_THE_MIDDLE][0] # From the original script: # If the response to the invalid PKCS#1 request (oracle_bad1) is equal to both # requests starting with 0002, we have a weak oracle. This is because the only # case where we can distinguish valid from invalid requests is when we send # correctly formatted PKCS#1 message with 0x00 on a correct position. This # makes our oracle weak if response_1 == response_2 == response_3: return RobotScanResultEnum.VULNERABLE_WEAK_ORACLE else: return RobotScanResultEnum.VULNERABLE_STRONG_ORACLE
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Look at the server's response to each ROBOT payload and return the conclusion of the analysis.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/robot_plugin.py#L135-L164
227,282
nabla-c0d3/sslyze
sslyze/plugins/utils/trust_store/trust_store.py
TrustStore.is_extended_validation
def is_extended_validation(self, certificate: Certificate) -> bool: """Is the supplied server certificate EV? """ if not self.ev_oids: raise ValueError('No EV OIDs supplied for {} store - cannot detect EV certificates'.format(self.name)) try: cert_policies_ext = certificate.extensions.get_extension_for_oid(ExtensionOID.CERTIFICATE_POLICIES) except ExtensionNotFound: return False for policy in cert_policies_ext.value: if policy.policy_identifier in self.ev_oids: return True return False
python
def is_extended_validation(self, certificate: Certificate) -> bool: """Is the supplied server certificate EV? """ if not self.ev_oids: raise ValueError('No EV OIDs supplied for {} store - cannot detect EV certificates'.format(self.name)) try: cert_policies_ext = certificate.extensions.get_extension_for_oid(ExtensionOID.CERTIFICATE_POLICIES) except ExtensionNotFound: return False for policy in cert_policies_ext.value: if policy.policy_identifier in self.ev_oids: return True return False
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Is the supplied server certificate EV?
[ "Is", "the", "supplied", "server", "certificate", "EV?" ]
0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/utils/trust_store/trust_store.py#L58-L72
227,283
nabla-c0d3/sslyze
sslyze/synchronous_scanner.py
SynchronousScanner.run_scan_command
def run_scan_command( self, server_info: ServerConnectivityInfo, scan_command: PluginScanCommand ) -> PluginScanResult: """Run a single scan command against a server; will block until the scan command has been completed. Args: server_info: The server's connectivity information. The test_connectivity_to_server() method must have been called first to ensure that the server is online and accessible. scan_command: The scan command to run against this server. Returns: The result of the scan command, which will be an instance of the scan command's corresponding PluginScanResult subclass. """ plugin_class = self._plugins_repository.get_plugin_class_for_command(scan_command) plugin = plugin_class() return plugin.process_task(server_info, scan_command)
python
def run_scan_command( self, server_info: ServerConnectivityInfo, scan_command: PluginScanCommand ) -> PluginScanResult: """Run a single scan command against a server; will block until the scan command has been completed. Args: server_info: The server's connectivity information. The test_connectivity_to_server() method must have been called first to ensure that the server is online and accessible. scan_command: The scan command to run against this server. Returns: The result of the scan command, which will be an instance of the scan command's corresponding PluginScanResult subclass. """ plugin_class = self._plugins_repository.get_plugin_class_for_command(scan_command) plugin = plugin_class() return plugin.process_task(server_info, scan_command)
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Run a single scan command against a server; will block until the scan command has been completed. Args: server_info: The server's connectivity information. The test_connectivity_to_server() method must have been called first to ensure that the server is online and accessible. scan_command: The scan command to run against this server. Returns: The result of the scan command, which will be an instance of the scan command's corresponding PluginScanResult subclass.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/synchronous_scanner.py#L32-L50
227,284
nabla-c0d3/sslyze
sslyze/plugins/utils/trust_store/trust_store_repository.py
TrustStoresRepository.update_default
def update_default(cls) -> 'TrustStoresRepository': """Update the default trust stores used by SSLyze. The latest stores will be downloaded from https://github.com/nabla-c0d3/trust_stores_observatory. """ temp_path = mkdtemp() try: # Download the latest trust stores archive_path = join(temp_path, 'trust_stores_as_pem.tar.gz') urlretrieve(cls._UPDATE_URL, archive_path) # Extract the archive extract_path = join(temp_path, 'extracted') tarfile.open(archive_path).extractall(extract_path) # Copy the files to SSLyze and overwrite the existing stores shutil.rmtree(cls._DEFAULT_TRUST_STORES_PATH) shutil.copytree(extract_path, cls._DEFAULT_TRUST_STORES_PATH) finally: shutil.rmtree(temp_path) # Re-generate the default repo - not thread-safe cls._DEFAULT_REPOSITORY = cls(cls._DEFAULT_TRUST_STORES_PATH) return cls._DEFAULT_REPOSITORY
python
def update_default(cls) -> 'TrustStoresRepository': """Update the default trust stores used by SSLyze. The latest stores will be downloaded from https://github.com/nabla-c0d3/trust_stores_observatory. """ temp_path = mkdtemp() try: # Download the latest trust stores archive_path = join(temp_path, 'trust_stores_as_pem.tar.gz') urlretrieve(cls._UPDATE_URL, archive_path) # Extract the archive extract_path = join(temp_path, 'extracted') tarfile.open(archive_path).extractall(extract_path) # Copy the files to SSLyze and overwrite the existing stores shutil.rmtree(cls._DEFAULT_TRUST_STORES_PATH) shutil.copytree(extract_path, cls._DEFAULT_TRUST_STORES_PATH) finally: shutil.rmtree(temp_path) # Re-generate the default repo - not thread-safe cls._DEFAULT_REPOSITORY = cls(cls._DEFAULT_TRUST_STORES_PATH) return cls._DEFAULT_REPOSITORY
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Update the default trust stores used by SSLyze. The latest stores will be downloaded from https://github.com/nabla-c0d3/trust_stores_observatory.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/utils/trust_store/trust_store_repository.py#L123-L146
227,285
nabla-c0d3/sslyze
sslyze/plugins/openssl_cipher_suites_plugin.py
OpenSslCipherSuitesPlugin._get_preferred_cipher_suite
def _get_preferred_cipher_suite( cls, server_connectivity_info: ServerConnectivityInfo, ssl_version: OpenSslVersionEnum, accepted_cipher_list: List['AcceptedCipherSuite'] ) -> Optional['AcceptedCipherSuite']: """Try to detect the server's preferred cipher suite among all cipher suites supported by SSLyze. """ if len(accepted_cipher_list) < 2: return None accepted_cipher_names = [cipher.openssl_name for cipher in accepted_cipher_list] should_use_legacy_openssl = None # For TLS 1.2, we need to figure whether the modern or legacy OpenSSL should be used to connect if ssl_version == OpenSslVersionEnum.TLSV1_2: should_use_legacy_openssl = True # If there are more than two modern-supported cipher suites, use the modern OpenSSL for cipher_name in accepted_cipher_names: modern_supported_cipher_count = 0 if not WorkaroundForTls12ForCipherSuites.requires_legacy_openssl(cipher_name): modern_supported_cipher_count += 1 if modern_supported_cipher_count > 1: should_use_legacy_openssl = False break first_cipher_str = ', '.join(accepted_cipher_names) # Swap the first two ciphers in the list to see if the server always picks the client's first cipher second_cipher_str = ', '.join([accepted_cipher_names[1], accepted_cipher_names[0]] + accepted_cipher_names[2:]) try: first_cipher = cls._get_selected_cipher_suite( server_connectivity_info, ssl_version, first_cipher_str, should_use_legacy_openssl ) second_cipher = cls._get_selected_cipher_suite( server_connectivity_info, ssl_version, second_cipher_str, should_use_legacy_openssl ) except (SslHandshakeRejected, ConnectionError): # Could not complete a handshake return None if first_cipher.name == second_cipher.name: # The server has its own preference for picking a cipher suite return first_cipher else: # The server has no preferred cipher suite as it follows the client's preference for picking a cipher suite return None
python
def _get_preferred_cipher_suite( cls, server_connectivity_info: ServerConnectivityInfo, ssl_version: OpenSslVersionEnum, accepted_cipher_list: List['AcceptedCipherSuite'] ) -> Optional['AcceptedCipherSuite']: """Try to detect the server's preferred cipher suite among all cipher suites supported by SSLyze. """ if len(accepted_cipher_list) < 2: return None accepted_cipher_names = [cipher.openssl_name for cipher in accepted_cipher_list] should_use_legacy_openssl = None # For TLS 1.2, we need to figure whether the modern or legacy OpenSSL should be used to connect if ssl_version == OpenSslVersionEnum.TLSV1_2: should_use_legacy_openssl = True # If there are more than two modern-supported cipher suites, use the modern OpenSSL for cipher_name in accepted_cipher_names: modern_supported_cipher_count = 0 if not WorkaroundForTls12ForCipherSuites.requires_legacy_openssl(cipher_name): modern_supported_cipher_count += 1 if modern_supported_cipher_count > 1: should_use_legacy_openssl = False break first_cipher_str = ', '.join(accepted_cipher_names) # Swap the first two ciphers in the list to see if the server always picks the client's first cipher second_cipher_str = ', '.join([accepted_cipher_names[1], accepted_cipher_names[0]] + accepted_cipher_names[2:]) try: first_cipher = cls._get_selected_cipher_suite( server_connectivity_info, ssl_version, first_cipher_str, should_use_legacy_openssl ) second_cipher = cls._get_selected_cipher_suite( server_connectivity_info, ssl_version, second_cipher_str, should_use_legacy_openssl ) except (SslHandshakeRejected, ConnectionError): # Could not complete a handshake return None if first_cipher.name == second_cipher.name: # The server has its own preference for picking a cipher suite return first_cipher else: # The server has no preferred cipher suite as it follows the client's preference for picking a cipher suite return None
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Try to detect the server's preferred cipher suite among all cipher suites supported by SSLyze.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/openssl_cipher_suites_plugin.py#L283-L330
227,286
nabla-c0d3/sslyze
sslyze/plugins/openssl_cipher_suites_plugin.py
CipherSuite.name
def name(self) -> str: """OpenSSL uses a different naming convention than the corresponding RFCs. """ return OPENSSL_TO_RFC_NAMES_MAPPING[self.ssl_version].get(self.openssl_name, self.openssl_name)
python
def name(self) -> str: """OpenSSL uses a different naming convention than the corresponding RFCs. """ return OPENSSL_TO_RFC_NAMES_MAPPING[self.ssl_version].get(self.openssl_name, self.openssl_name)
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OpenSSL uses a different naming convention than the corresponding RFCs.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/openssl_cipher_suites_plugin.py#L366-L369
227,287
nabla-c0d3/sslyze
sslyze/concurrent_scanner.py
ConcurrentScanner.queue_scan_command
def queue_scan_command(self, server_info: ServerConnectivityInfo, scan_command: PluginScanCommand) -> None: """Queue a scan command targeting a specific server. Args: server_info: The server's connectivity information. The test_connectivity_to_server() method must have been called first to ensure that the server is online and accessible. scan_command: The scan command to run against this server. """ # Ensure we have the right processes and queues in place for this hostname self._check_and_create_process(server_info.hostname) # Add the task to the right queue self._queued_tasks_nb += 1 if scan_command.is_aggressive: # Aggressive commands should not be run in parallel against # a given server so we use the priority queues to prevent this self._hostname_queues_dict[server_info.hostname].put((server_info, scan_command)) else: # Normal commands get put in the standard/shared queue self._task_queue.put((server_info, scan_command))
python
def queue_scan_command(self, server_info: ServerConnectivityInfo, scan_command: PluginScanCommand) -> None: """Queue a scan command targeting a specific server. Args: server_info: The server's connectivity information. The test_connectivity_to_server() method must have been called first to ensure that the server is online and accessible. scan_command: The scan command to run against this server. """ # Ensure we have the right processes and queues in place for this hostname self._check_and_create_process(server_info.hostname) # Add the task to the right queue self._queued_tasks_nb += 1 if scan_command.is_aggressive: # Aggressive commands should not be run in parallel against # a given server so we use the priority queues to prevent this self._hostname_queues_dict[server_info.hostname].put((server_info, scan_command)) else: # Normal commands get put in the standard/shared queue self._task_queue.put((server_info, scan_command))
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Queue a scan command targeting a specific server. Args: server_info: The server's connectivity information. The test_connectivity_to_server() method must have been called first to ensure that the server is online and accessible. scan_command: The scan command to run against this server.
[ "Queue", "a", "scan", "command", "targeting", "a", "specific", "server", "." ]
0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/concurrent_scanner.py#L83-L102
227,288
nabla-c0d3/sslyze
sslyze/concurrent_scanner.py
ConcurrentScanner.get_results
def get_results(self) -> Iterable[PluginScanResult]: """Return the result of previously queued scan commands; new commands cannot be queued once this is called. Returns: The results of all the scan commands previously queued. Each result will be an instance of the scan corresponding command's PluginScanResult subclass. If there was an unexpected error while running the scan command, it will be a 'PluginRaisedExceptionScanResult' instance instead. """ # Put a 'None' sentinel in the queue to let the each process know when every task has been completed for _ in range(self._get_current_processes_nb()): self._task_queue.put(None) for hostname, hostname_queue in self._hostname_queues_dict.items(): for i in range(len(self._processes_dict[hostname])): hostname_queue.put(None) received_task_results = 0 # Go on until all the tasks have been completed and all processes are done expected_task_results = self._queued_tasks_nb + self._get_current_processes_nb() while received_task_results != expected_task_results: result = self._result_queue.get() self._result_queue.task_done() received_task_results += 1 if result is None: # Getting None means that one process was done pass else: # Getting an actual result yield result # Ensure all the queues and processes are done self._task_queue.join() self._result_queue.join() for hostname_queue in self._hostname_queues_dict.values(): hostname_queue.join() for process_list in self._processes_dict.values(): for process in process_list: process.join()
python
def get_results(self) -> Iterable[PluginScanResult]: """Return the result of previously queued scan commands; new commands cannot be queued once this is called. Returns: The results of all the scan commands previously queued. Each result will be an instance of the scan corresponding command's PluginScanResult subclass. If there was an unexpected error while running the scan command, it will be a 'PluginRaisedExceptionScanResult' instance instead. """ # Put a 'None' sentinel in the queue to let the each process know when every task has been completed for _ in range(self._get_current_processes_nb()): self._task_queue.put(None) for hostname, hostname_queue in self._hostname_queues_dict.items(): for i in range(len(self._processes_dict[hostname])): hostname_queue.put(None) received_task_results = 0 # Go on until all the tasks have been completed and all processes are done expected_task_results = self._queued_tasks_nb + self._get_current_processes_nb() while received_task_results != expected_task_results: result = self._result_queue.get() self._result_queue.task_done() received_task_results += 1 if result is None: # Getting None means that one process was done pass else: # Getting an actual result yield result # Ensure all the queues and processes are done self._task_queue.join() self._result_queue.join() for hostname_queue in self._hostname_queues_dict.values(): hostname_queue.join() for process_list in self._processes_dict.values(): for process in process_list: process.join()
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Return the result of previously queued scan commands; new commands cannot be queued once this is called. Returns: The results of all the scan commands previously queued. Each result will be an instance of the scan corresponding command's PluginScanResult subclass. If there was an unexpected error while running the scan command, it will be a 'PluginRaisedExceptionScanResult' instance instead.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/concurrent_scanner.py#L135-L172
227,289
nabla-c0d3/sslyze
sslyze/utils/worker_process.py
WorkerProcess.run
def run(self) -> None: """The process will first complete tasks it gets from self.queue_in. Once it gets notified that all the tasks have been completed, it terminates. """ from sslyze.concurrent_scanner import PluginRaisedExceptionScanResult # Start processing task in the priority queue first current_queue_in = self.priority_queue_in while True: task = current_queue_in.get() # Grab a task from queue_in if task is None: # All tasks have been completed current_queue_in.task_done() if current_queue_in == self.priority_queue_in: # All high priority tasks have been completed; switch to low priority tasks current_queue_in = self.queue_in continue else: # All the tasks have been completed; pass on the sentinel to result_queue and exit self.queue_out.put(None) break server_info, scan_command = task try: result = self._synchronous_scanner.run_scan_command(server_info, scan_command) except Exception as e: # raise result = PluginRaisedExceptionScanResult(server_info, scan_command, e) # Send the result to queue_out self.queue_out.put(result) current_queue_in.task_done()
python
def run(self) -> None: """The process will first complete tasks it gets from self.queue_in. Once it gets notified that all the tasks have been completed, it terminates. """ from sslyze.concurrent_scanner import PluginRaisedExceptionScanResult # Start processing task in the priority queue first current_queue_in = self.priority_queue_in while True: task = current_queue_in.get() # Grab a task from queue_in if task is None: # All tasks have been completed current_queue_in.task_done() if current_queue_in == self.priority_queue_in: # All high priority tasks have been completed; switch to low priority tasks current_queue_in = self.queue_in continue else: # All the tasks have been completed; pass on the sentinel to result_queue and exit self.queue_out.put(None) break server_info, scan_command = task try: result = self._synchronous_scanner.run_scan_command(server_info, scan_command) except Exception as e: # raise result = PluginRaisedExceptionScanResult(server_info, scan_command, e) # Send the result to queue_out self.queue_out.put(result) current_queue_in.task_done()
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The process will first complete tasks it gets from self.queue_in. Once it gets notified that all the tasks have been completed, it terminates.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/utils/worker_process.py#L26-L58
227,290
nabla-c0d3/sslyze
sslyze/utils/connection_helpers.py
ProxyTunnelingConnectionHelper.connect_socket
def connect_socket(self, sock: socket.socket) -> None: """Setup HTTP tunneling with the configured proxy. """ # Setup HTTP tunneling try: sock.connect((self._tunnel_host, self._tunnel_port)) except socket.timeout as e: raise ProxyError(self.ERR_PROXY_OFFLINE.format(str(e))) except socket.error as e: raise ProxyError(self.ERR_PROXY_OFFLINE.format(str(e))) # Send a CONNECT request with the host we want to tunnel to if self._tunnel_basic_auth_token is None: sock.send(self.HTTP_CONNECT_REQ.format(self._server_host, self._server_port).encode('utf-8')) else: sock.send(self.HTTP_CONNECT_REQ_PROXY_AUTH_BASIC.format( self._server_host, self._server_port, self._tunnel_basic_auth_token ).encode('utf-8')) http_response = HttpResponseParser.parse_from_socket(sock) # Check if the proxy was able to connect to the host if http_response.status != 200: raise ProxyError(self.ERR_CONNECT_REJECTED)
python
def connect_socket(self, sock: socket.socket) -> None: """Setup HTTP tunneling with the configured proxy. """ # Setup HTTP tunneling try: sock.connect((self._tunnel_host, self._tunnel_port)) except socket.timeout as e: raise ProxyError(self.ERR_PROXY_OFFLINE.format(str(e))) except socket.error as e: raise ProxyError(self.ERR_PROXY_OFFLINE.format(str(e))) # Send a CONNECT request with the host we want to tunnel to if self._tunnel_basic_auth_token is None: sock.send(self.HTTP_CONNECT_REQ.format(self._server_host, self._server_port).encode('utf-8')) else: sock.send(self.HTTP_CONNECT_REQ_PROXY_AUTH_BASIC.format( self._server_host, self._server_port, self._tunnel_basic_auth_token ).encode('utf-8')) http_response = HttpResponseParser.parse_from_socket(sock) # Check if the proxy was able to connect to the host if http_response.status != 200: raise ProxyError(self.ERR_CONNECT_REJECTED)
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Setup HTTP tunneling with the configured proxy.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/utils/connection_helpers.py#L63-L85
227,291
nabla-c0d3/sslyze
sslyze/server_connectivity_info.py
ServerConnectivityInfo.get_preconfigured_ssl_connection
def get_preconfigured_ssl_connection( self, override_ssl_version: Optional[OpenSslVersionEnum] = None, ssl_verify_locations: Optional[str] = None, should_use_legacy_openssl: Optional[bool] = None, ) -> SslConnection: """Get an SSLConnection instance with the right SSL configuration for successfully connecting to the server. Used by all plugins to connect to the server and run scans. """ if override_ssl_version is not None: # Caller wants to override the ssl version to use for this connection final_ssl_version = override_ssl_version # Then we don't know which cipher suite is supported by the server for this ssl version openssl_cipher_string = None else: # Use the ssl version and cipher suite that were successful during connectivity testing final_ssl_version = self.highest_ssl_version_supported openssl_cipher_string = self.openssl_cipher_string_supported if should_use_legacy_openssl is not None: # Caller wants to override which version of OpenSSL to use # Then we don't know which cipher suite is supported by this version of OpenSSL openssl_cipher_string = None if self.client_auth_credentials is not None: # If we have creds for client authentication, go ahead and use them should_ignore_client_auth = False else: # Ignore client auth requests if the server allows optional TLS client authentication should_ignore_client_auth = True # But do not ignore them is client authentication is required so that the right exceptions get thrown # within the plugins, providing a better output if self.client_auth_requirement == ClientAuthenticationServerConfigurationEnum.REQUIRED: should_ignore_client_auth = False ssl_connection = SslConnectionConfigurator.get_connection( ssl_version=final_ssl_version, server_info=self, openssl_cipher_string=openssl_cipher_string, ssl_verify_locations=ssl_verify_locations, should_use_legacy_openssl=should_use_legacy_openssl, should_ignore_client_auth=should_ignore_client_auth, ) return ssl_connection
python
def get_preconfigured_ssl_connection( self, override_ssl_version: Optional[OpenSslVersionEnum] = None, ssl_verify_locations: Optional[str] = None, should_use_legacy_openssl: Optional[bool] = None, ) -> SslConnection: """Get an SSLConnection instance with the right SSL configuration for successfully connecting to the server. Used by all plugins to connect to the server and run scans. """ if override_ssl_version is not None: # Caller wants to override the ssl version to use for this connection final_ssl_version = override_ssl_version # Then we don't know which cipher suite is supported by the server for this ssl version openssl_cipher_string = None else: # Use the ssl version and cipher suite that were successful during connectivity testing final_ssl_version = self.highest_ssl_version_supported openssl_cipher_string = self.openssl_cipher_string_supported if should_use_legacy_openssl is not None: # Caller wants to override which version of OpenSSL to use # Then we don't know which cipher suite is supported by this version of OpenSSL openssl_cipher_string = None if self.client_auth_credentials is not None: # If we have creds for client authentication, go ahead and use them should_ignore_client_auth = False else: # Ignore client auth requests if the server allows optional TLS client authentication should_ignore_client_auth = True # But do not ignore them is client authentication is required so that the right exceptions get thrown # within the plugins, providing a better output if self.client_auth_requirement == ClientAuthenticationServerConfigurationEnum.REQUIRED: should_ignore_client_auth = False ssl_connection = SslConnectionConfigurator.get_connection( ssl_version=final_ssl_version, server_info=self, openssl_cipher_string=openssl_cipher_string, ssl_verify_locations=ssl_verify_locations, should_use_legacy_openssl=should_use_legacy_openssl, should_ignore_client_auth=should_ignore_client_auth, ) return ssl_connection
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Get an SSLConnection instance with the right SSL configuration for successfully connecting to the server. Used by all plugins to connect to the server and run scans.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/server_connectivity_info.py#L70-L114
227,292
nabla-c0d3/sslyze
sslyze/cli/command_line_parser.py
CommandLineParser._add_plugin_options
def _add_plugin_options(self, available_plugins: Set[Type[Plugin]]) -> None: """Recovers the list of command line options implemented by the available plugins and adds them to the command line parser. """ for plugin_class in available_plugins: # Add the current plugin's commands to the parser group = OptionGroup(self._parser, plugin_class.get_title(), plugin_class.get_description()) for option in plugin_class.get_cli_option_group(): group.add_option(option) self._parser.add_option_group(group)
python
def _add_plugin_options(self, available_plugins: Set[Type[Plugin]]) -> None: """Recovers the list of command line options implemented by the available plugins and adds them to the command line parser. """ for plugin_class in available_plugins: # Add the current plugin's commands to the parser group = OptionGroup(self._parser, plugin_class.get_title(), plugin_class.get_description()) for option in plugin_class.get_cli_option_group(): group.add_option(option) self._parser.add_option_group(group)
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Recovers the list of command line options implemented by the available plugins and adds them to the command line parser.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/cli/command_line_parser.py#L428-L437
227,293
nabla-c0d3/sslyze
setup.py
get_long_description
def get_long_description(): """Convert the README file into the long description. """ with open(path.join(root_path, 'README.md'), encoding='utf-8') as f: long_description = f.read() return long_description
python
def get_long_description(): """Convert the README file into the long description. """ with open(path.join(root_path, 'README.md'), encoding='utf-8') as f: long_description = f.read() return long_description
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Convert the README file into the long description.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/setup.py#L23-L28
227,294
nabla-c0d3/sslyze
setup.py
get_include_files
def get_include_files(): """"Get the list of trust stores so they properly packaged when doing a cx_freeze build. """ plugin_data_files = [] trust_stores_pem_path = path.join(root_path, 'sslyze', 'plugins', 'utils', 'trust_store', 'pem_files') for file in listdir(trust_stores_pem_path): file = path.join(trust_stores_pem_path, file) if path.isfile(file): # skip directories filename = path.basename(file) plugin_data_files.append((file, path.join('pem_files', filename))) return plugin_data_files
python
def get_include_files(): """"Get the list of trust stores so they properly packaged when doing a cx_freeze build. """ plugin_data_files = [] trust_stores_pem_path = path.join(root_path, 'sslyze', 'plugins', 'utils', 'trust_store', 'pem_files') for file in listdir(trust_stores_pem_path): file = path.join(trust_stores_pem_path, file) if path.isfile(file): # skip directories filename = path.basename(file) plugin_data_files.append((file, path.join('pem_files', filename))) return plugin_data_files
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Get the list of trust stores so they properly packaged when doing a cx_freeze build.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/setup.py#L31-L41
227,295
nabla-c0d3/sslyze
sslyze/plugins/utils/certificate_utils.py
CertificateUtils.get_dns_subject_alternative_names
def get_dns_subject_alternative_names(certificate: cryptography.x509.Certificate) -> List[str]: """Retrieve all the DNS entries of the Subject Alternative Name extension. """ subj_alt_names: List[str] = [] try: san_ext = certificate.extensions.get_extension_for_oid(ExtensionOID.SUBJECT_ALTERNATIVE_NAME) subj_alt_names = san_ext.value.get_values_for_type(DNSName) except ExtensionNotFound: pass return subj_alt_names
python
def get_dns_subject_alternative_names(certificate: cryptography.x509.Certificate) -> List[str]: """Retrieve all the DNS entries of the Subject Alternative Name extension. """ subj_alt_names: List[str] = [] try: san_ext = certificate.extensions.get_extension_for_oid(ExtensionOID.SUBJECT_ALTERNATIVE_NAME) subj_alt_names = san_ext.value.get_values_for_type(DNSName) except ExtensionNotFound: pass return subj_alt_names
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Retrieve all the DNS entries of the Subject Alternative Name extension.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/utils/certificate_utils.py#L24-L33
227,296
nabla-c0d3/sslyze
sslyze/plugins/utils/certificate_utils.py
CertificateUtils.matches_hostname
def matches_hostname(cls, certificate: cryptography.x509.Certificate, hostname: str) -> None: """Verify that the certificate was issued for the given hostname. Raises: CertificateError: If the certificate was not issued for the supplied hostname. """ # Extract the names from the certificate to create the properly-formatted dictionary certificate_names = { 'subject': (tuple([('commonName', name) for name in cls.get_common_names(certificate.subject)]),), 'subjectAltName': tuple([('DNS', name) for name in cls.get_dns_subject_alternative_names(certificate)]), } # CertificateError is raised on failure ssl.match_hostname(certificate_names, hostname)
python
def matches_hostname(cls, certificate: cryptography.x509.Certificate, hostname: str) -> None: """Verify that the certificate was issued for the given hostname. Raises: CertificateError: If the certificate was not issued for the supplied hostname. """ # Extract the names from the certificate to create the properly-formatted dictionary certificate_names = { 'subject': (tuple([('commonName', name) for name in cls.get_common_names(certificate.subject)]),), 'subjectAltName': tuple([('DNS', name) for name in cls.get_dns_subject_alternative_names(certificate)]), } # CertificateError is raised on failure ssl.match_hostname(certificate_names, hostname)
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Verify that the certificate was issued for the given hostname. Raises: CertificateError: If the certificate was not issued for the supplied hostname.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/utils/certificate_utils.py#L36-L48
227,297
nabla-c0d3/sslyze
sslyze/plugins/utils/certificate_utils.py
CertificateUtils.get_name_as_short_text
def get_name_as_short_text(cls, name_field: cryptography.x509.Name) -> str: """Convert a name field returned by the cryptography module to a string suitable for displaying it to the user. """ # Name_field is supposed to be a Subject or an Issuer; print the CN if there is one common_names = cls.get_common_names(name_field) if common_names: # We don't support certs with multiple CNs return common_names[0] else: # Otherwise show the whole field return cls.get_name_as_text(name_field)
python
def get_name_as_short_text(cls, name_field: cryptography.x509.Name) -> str: """Convert a name field returned by the cryptography module to a string suitable for displaying it to the user. """ # Name_field is supposed to be a Subject or an Issuer; print the CN if there is one common_names = cls.get_common_names(name_field) if common_names: # We don't support certs with multiple CNs return common_names[0] else: # Otherwise show the whole field return cls.get_name_as_text(name_field)
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Convert a name field returned by the cryptography module to a string suitable for displaying it to the user.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/utils/certificate_utils.py#L51-L61
227,298
nabla-c0d3/sslyze
sslyze/plugins/utils/certificate_utils.py
CertificateUtils.has_ocsp_must_staple_extension
def has_ocsp_must_staple_extension(certificate: cryptography.x509.Certificate) -> bool: """Return True if the certificate has the OCSP Must-Staple extension defined in RFC 6066. """ has_ocsp_must_staple = False try: tls_feature_ext = certificate.extensions.get_extension_for_oid(ExtensionOID.TLS_FEATURE) for feature_type in tls_feature_ext.value: if feature_type == cryptography.x509.TLSFeatureType.status_request: has_ocsp_must_staple = True break except ExtensionNotFound: pass return has_ocsp_must_staple
python
def has_ocsp_must_staple_extension(certificate: cryptography.x509.Certificate) -> bool: """Return True if the certificate has the OCSP Must-Staple extension defined in RFC 6066. """ has_ocsp_must_staple = False try: tls_feature_ext = certificate.extensions.get_extension_for_oid(ExtensionOID.TLS_FEATURE) for feature_type in tls_feature_ext.value: if feature_type == cryptography.x509.TLSFeatureType.status_request: has_ocsp_must_staple = True break except ExtensionNotFound: pass return has_ocsp_must_staple
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Return True if the certificate has the OCSP Must-Staple extension defined in RFC 6066.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/plugins/utils/certificate_utils.py#L95-L108
227,299
nabla-c0d3/sslyze
sslyze/utils/tls_wrapped_protocol_helpers.py
HttpsHelper.send_request
def send_request(self, ssl_client: SslClient) -> str: """Send an HTTP GET to the server and return the HTTP status code. """ try: ssl_client.write(HttpRequestGenerator.get_request(self._hostname)) # Parse the response and print the Location header http_response = HttpResponseParser.parse_from_ssl_connection(ssl_client) if http_response.version == 9: # HTTP 0.9 => Probably not an HTTP response result = self.ERR_NOT_HTTP else: redirect = '' if 300 <= http_response.status < 400: redirect_location = http_response.getheader('Location') if redirect_location: # Add redirection URL to the result redirect = f' - {redirect_location}' result = self.GET_RESULT_FORMAT.format(http_response.status, http_response.reason, redirect) except socket.timeout: result = self.ERR_HTTP_TIMEOUT except IOError: result = self.ERR_GENERIC return result
python
def send_request(self, ssl_client: SslClient) -> str: """Send an HTTP GET to the server and return the HTTP status code. """ try: ssl_client.write(HttpRequestGenerator.get_request(self._hostname)) # Parse the response and print the Location header http_response = HttpResponseParser.parse_from_ssl_connection(ssl_client) if http_response.version == 9: # HTTP 0.9 => Probably not an HTTP response result = self.ERR_NOT_HTTP else: redirect = '' if 300 <= http_response.status < 400: redirect_location = http_response.getheader('Location') if redirect_location: # Add redirection URL to the result redirect = f' - {redirect_location}' result = self.GET_RESULT_FORMAT.format(http_response.status, http_response.reason, redirect) except socket.timeout: result = self.ERR_HTTP_TIMEOUT except IOError: result = self.ERR_GENERIC return result
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Send an HTTP GET to the server and return the HTTP status code.
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0fb3ae668453d7ecf616d0755f237ca7be9f62fa
https://github.com/nabla-c0d3/sslyze/blob/0fb3ae668453d7ecf616d0755f237ca7be9f62fa/sslyze/utils/tls_wrapped_protocol_helpers.py#L65-L90