id int32 0 252k | repo stringlengths 7 55 | path stringlengths 4 127 | func_name stringlengths 1 88 | original_string stringlengths 75 19.8k | language stringclasses 1
value | code stringlengths 75 19.8k | code_tokens list | docstring stringlengths 3 17.3k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 87 242 |
|---|---|---|---|---|---|---|---|---|---|---|---|
16,800 | eventbrite/pysoa | pysoa/common/logging.py | SyslogHandler.emit | def emit(self, record):
"""
Emits a record. The record is sent carefully, according to the following rules, to ensure that data is not
lost by exceeding the MTU of the connection.
- If the byte-encoded record length plus prefix length plus suffix length plus priority length is less than... | python | def emit(self, record):
"""
Emits a record. The record is sent carefully, according to the following rules, to ensure that data is not
lost by exceeding the MTU of the connection.
- If the byte-encoded record length plus prefix length plus suffix length plus priority length is less than... | [
"def",
"emit",
"(",
"self",
",",
"record",
")",
":",
"# noinspection PyBroadException",
"try",
":",
"formatted_message",
"=",
"self",
".",
"format",
"(",
"record",
")",
"encoded_message",
"=",
"formatted_message",
".",
"encode",
"(",
"'utf-8'",
")",
"prefix",
... | Emits a record. The record is sent carefully, according to the following rules, to ensure that data is not
lost by exceeding the MTU of the connection.
- If the byte-encoded record length plus prefix length plus suffix length plus priority length is less than the
maximum allowed length, then ... | [
"Emits",
"a",
"record",
".",
"The",
"record",
"is",
"sent",
"carefully",
"according",
"to",
"the",
"following",
"rules",
"to",
"ensure",
"that",
"data",
"is",
"not",
"lost",
"by",
"exceeding",
"the",
"MTU",
"of",
"the",
"connection",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/common/logging.py#L270-L359 |
16,801 | eventbrite/pysoa | pysoa/client/expander.py | TypeNode.add_expansion | def add_expansion(self, expansion_node):
"""
Add a child expansion node to the type node's expansions.
If an expansion node with the same name is already present in type node's expansions, the new and existing
expansion node's children are merged.
:param expansion_node: The exp... | python | def add_expansion(self, expansion_node):
"""
Add a child expansion node to the type node's expansions.
If an expansion node with the same name is already present in type node's expansions, the new and existing
expansion node's children are merged.
:param expansion_node: The exp... | [
"def",
"add_expansion",
"(",
"self",
",",
"expansion_node",
")",
":",
"# Check for existing expansion node with the same name",
"existing_expansion_node",
"=",
"self",
".",
"get_expansion",
"(",
"expansion_node",
".",
"name",
")",
"if",
"existing_expansion_node",
":",
"# ... | Add a child expansion node to the type node's expansions.
If an expansion node with the same name is already present in type node's expansions, the new and existing
expansion node's children are merged.
:param expansion_node: The expansion node to add
:type expansion_node: ExpansionNod... | [
"Add",
"a",
"child",
"expansion",
"node",
"to",
"the",
"type",
"node",
"s",
"expansions",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/client/expander.py#L114-L132 |
16,802 | eventbrite/pysoa | pysoa/client/expander.py | TypeNode.find_objects | def find_objects(self, obj):
"""
Find all objects in obj that match the type of the type node.
:param obj: A dictionary or list of dictionaries to search, recursively
:type obj: union[dict, list[dict]]
:return: a list of dictionary objects that have a "_type" key value that mat... | python | def find_objects(self, obj):
"""
Find all objects in obj that match the type of the type node.
:param obj: A dictionary or list of dictionaries to search, recursively
:type obj: union[dict, list[dict]]
:return: a list of dictionary objects that have a "_type" key value that mat... | [
"def",
"find_objects",
"(",
"self",
",",
"obj",
")",
":",
"objects",
"=",
"[",
"]",
"if",
"isinstance",
"(",
"obj",
",",
"dict",
")",
":",
"# obj is a dictionary, so it is a potential match...",
"object_type",
"=",
"obj",
".",
"get",
"(",
"'_type'",
")",
"if... | Find all objects in obj that match the type of the type node.
:param obj: A dictionary or list of dictionaries to search, recursively
:type obj: union[dict, list[dict]]
:return: a list of dictionary objects that have a "_type" key value that matches the type of this node.
:rtype: list[... | [
"Find",
"all",
"objects",
"in",
"obj",
"that",
"match",
"the",
"type",
"of",
"the",
"type",
"node",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/client/expander.py#L147-L174 |
16,803 | eventbrite/pysoa | pysoa/client/expander.py | TypeNode.to_dict | def to_dict(self):
"""
Convert the tree node to its dictionary representation.
:return: an expansion dictionary that represents the type and expansions of this tree node.
:rtype dict[list[union[str, unicode]]]
"""
expansion_strings = []
for expansion in self.exp... | python | def to_dict(self):
"""
Convert the tree node to its dictionary representation.
:return: an expansion dictionary that represents the type and expansions of this tree node.
:rtype dict[list[union[str, unicode]]]
"""
expansion_strings = []
for expansion in self.exp... | [
"def",
"to_dict",
"(",
"self",
")",
":",
"expansion_strings",
"=",
"[",
"]",
"for",
"expansion",
"in",
"self",
".",
"expansions",
":",
"expansion_strings",
".",
"extend",
"(",
"expansion",
".",
"to_strings",
"(",
")",
")",
"return",
"{",
"self",
".",
"ty... | Convert the tree node to its dictionary representation.
:return: an expansion dictionary that represents the type and expansions of this tree node.
:rtype dict[list[union[str, unicode]]] | [
"Convert",
"the",
"tree",
"node",
"to",
"its",
"dictionary",
"representation",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/client/expander.py#L183-L197 |
16,804 | eventbrite/pysoa | pysoa/client/expander.py | ExpansionNode.to_strings | def to_strings(self):
"""
Convert the expansion node to a list of expansion strings.
:return: a list of expansion strings that represent the leaf nodes of the expansion tree.
:rtype: list[union[str, unicode]]
"""
result = []
if not self.expansions:
r... | python | def to_strings(self):
"""
Convert the expansion node to a list of expansion strings.
:return: a list of expansion strings that represent the leaf nodes of the expansion tree.
:rtype: list[union[str, unicode]]
"""
result = []
if not self.expansions:
r... | [
"def",
"to_strings",
"(",
"self",
")",
":",
"result",
"=",
"[",
"]",
"if",
"not",
"self",
".",
"expansions",
":",
"result",
".",
"append",
"(",
"self",
".",
"name",
")",
"else",
":",
"for",
"expansion",
"in",
"self",
".",
"expansions",
":",
"result",... | Convert the expansion node to a list of expansion strings.
:return: a list of expansion strings that represent the leaf nodes of the expansion tree.
:rtype: list[union[str, unicode]] | [
"Convert",
"the",
"expansion",
"node",
"to",
"a",
"list",
"of",
"expansion",
"strings",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/client/expander.py#L252-L267 |
16,805 | eventbrite/pysoa | pysoa/client/expander.py | ExpansionConverter.dict_to_trees | def dict_to_trees(self, expansion_dict):
"""
Convert an expansion dictionary to a list of expansion trees.
:param expansion_dict: An expansion dictionary (see below)
:type expansion_dict: dict
:return: a list of expansion trees (`TreeNode` instances).
:rtype: list[TreeN... | python | def dict_to_trees(self, expansion_dict):
"""
Convert an expansion dictionary to a list of expansion trees.
:param expansion_dict: An expansion dictionary (see below)
:type expansion_dict: dict
:return: a list of expansion trees (`TreeNode` instances).
:rtype: list[TreeN... | [
"def",
"dict_to_trees",
"(",
"self",
",",
"expansion_dict",
")",
":",
"trees",
"=",
"[",
"]",
"for",
"node_type",
",",
"expansion_list",
"in",
"six",
".",
"iteritems",
"(",
"expansion_dict",
")",
":",
"type_node",
"=",
"TypeNode",
"(",
"node_type",
"=",
"n... | Convert an expansion dictionary to a list of expansion trees.
:param expansion_dict: An expansion dictionary (see below)
:type expansion_dict: dict
:return: a list of expansion trees (`TreeNode` instances).
:rtype: list[TreeNode]
Expansion Dictionary Format:
{
... | [
"Convert",
"an",
"expansion",
"dictionary",
"to",
"a",
"list",
"of",
"expansion",
"trees",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/client/expander.py#L344-L401 |
16,806 | eventbrite/pysoa | pysoa/client/expander.py | ExpansionConverter.trees_to_dict | def trees_to_dict(trees_list):
"""
Convert a list of `TreeNode`s to an expansion dictionary.
:param trees_list: A list of `TreeNode` instances
:type trees_list: list[TreeNode]
:return: An expansion dictionary that represents the expansions detailed in the provided expansions tr... | python | def trees_to_dict(trees_list):
"""
Convert a list of `TreeNode`s to an expansion dictionary.
:param trees_list: A list of `TreeNode` instances
:type trees_list: list[TreeNode]
:return: An expansion dictionary that represents the expansions detailed in the provided expansions tr... | [
"def",
"trees_to_dict",
"(",
"trees_list",
")",
":",
"result",
"=",
"{",
"}",
"for",
"tree",
"in",
"trees_list",
":",
"result",
".",
"update",
"(",
"tree",
".",
"to_dict",
"(",
")",
")",
"return",
"result"
] | Convert a list of `TreeNode`s to an expansion dictionary.
:param trees_list: A list of `TreeNode` instances
:type trees_list: list[TreeNode]
:return: An expansion dictionary that represents the expansions detailed in the provided expansions tree nodes
:rtype: dict[union[str, unicode]] | [
"Convert",
"a",
"list",
"of",
"TreeNode",
"s",
"to",
"an",
"expansion",
"dictionary",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/client/expander.py#L404-L419 |
16,807 | eventbrite/pysoa | pysoa/common/transport/redis_gateway/backend/sentinel.py | SentinelRedisClient._get_service_names | def _get_service_names(self):
"""
Get a list of service names from Sentinel. Tries Sentinel hosts until one succeeds; if none succeed,
raises a ConnectionError.
:return: the list of service names from Sentinel.
"""
master_info = None
connection_errors = []
... | python | def _get_service_names(self):
"""
Get a list of service names from Sentinel. Tries Sentinel hosts until one succeeds; if none succeed,
raises a ConnectionError.
:return: the list of service names from Sentinel.
"""
master_info = None
connection_errors = []
... | [
"def",
"_get_service_names",
"(",
"self",
")",
":",
"master_info",
"=",
"None",
"connection_errors",
"=",
"[",
"]",
"for",
"sentinel",
"in",
"self",
".",
"_sentinel",
".",
"sentinels",
":",
"# Unfortunately, redis.sentinel.Sentinel does not support sentinel_masters, so we... | Get a list of service names from Sentinel. Tries Sentinel hosts until one succeeds; if none succeed,
raises a ConnectionError.
:return: the list of service names from Sentinel. | [
"Get",
"a",
"list",
"of",
"service",
"names",
"from",
"Sentinel",
".",
"Tries",
"Sentinel",
"hosts",
"until",
"one",
"succeeds",
";",
"if",
"none",
"succeed",
"raises",
"a",
"ConnectionError",
"."
] | 9c052cae2397d13de3df8ae2c790846a70b53f18 | https://github.com/eventbrite/pysoa/blob/9c052cae2397d13de3df8ae2c790846a70b53f18/pysoa/common/transport/redis_gateway/backend/sentinel.py#L92-L114 |
16,808 | Yelp/venv-update | venv_update.py | timid_relpath | def timid_relpath(arg):
"""convert an argument to a relative path, carefully"""
# TODO-TEST: unit tests
from os.path import isabs, relpath, sep
if isabs(arg):
result = relpath(arg)
if result.count(sep) + 1 < arg.count(sep):
return result
return arg | python | def timid_relpath(arg):
"""convert an argument to a relative path, carefully"""
# TODO-TEST: unit tests
from os.path import isabs, relpath, sep
if isabs(arg):
result = relpath(arg)
if result.count(sep) + 1 < arg.count(sep):
return result
return arg | [
"def",
"timid_relpath",
"(",
"arg",
")",
":",
"# TODO-TEST: unit tests",
"from",
"os",
".",
"path",
"import",
"isabs",
",",
"relpath",
",",
"sep",
"if",
"isabs",
"(",
"arg",
")",
":",
"result",
"=",
"relpath",
"(",
"arg",
")",
"if",
"result",
".",
"cou... | convert an argument to a relative path, carefully | [
"convert",
"an",
"argument",
"to",
"a",
"relative",
"path",
"carefully"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/venv_update.py#L104-L113 |
16,809 | Yelp/venv-update | venv_update.py | ensure_virtualenv | def ensure_virtualenv(args, return_values):
"""Ensure we have a valid virtualenv."""
def adjust_options(options, args):
# TODO-TEST: proper error message with no arguments
venv_path = return_values.venv_path = args[0]
if venv_path == DEFAULT_VIRTUALENV_PATH or options.prompt == '<dirnam... | python | def ensure_virtualenv(args, return_values):
"""Ensure we have a valid virtualenv."""
def adjust_options(options, args):
# TODO-TEST: proper error message with no arguments
venv_path = return_values.venv_path = args[0]
if venv_path == DEFAULT_VIRTUALENV_PATH or options.prompt == '<dirnam... | [
"def",
"ensure_virtualenv",
"(",
"args",
",",
"return_values",
")",
":",
"def",
"adjust_options",
"(",
"options",
",",
"args",
")",
":",
"# TODO-TEST: proper error message with no arguments",
"venv_path",
"=",
"return_values",
".",
"venv_path",
"=",
"args",
"[",
"0"... | Ensure we have a valid virtualenv. | [
"Ensure",
"we",
"have",
"a",
"valid",
"virtualenv",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/venv_update.py#L272-L313 |
16,810 | Yelp/venv-update | venv_update.py | touch | def touch(filename, timestamp):
"""set the mtime of a file"""
if timestamp is not None:
timestamp = (timestamp, timestamp) # atime, mtime
from os import utime
utime(filename, timestamp) | python | def touch(filename, timestamp):
"""set the mtime of a file"""
if timestamp is not None:
timestamp = (timestamp, timestamp) # atime, mtime
from os import utime
utime(filename, timestamp) | [
"def",
"touch",
"(",
"filename",
",",
"timestamp",
")",
":",
"if",
"timestamp",
"is",
"not",
"None",
":",
"timestamp",
"=",
"(",
"timestamp",
",",
"timestamp",
")",
"# atime, mtime",
"from",
"os",
"import",
"utime",
"utime",
"(",
"filename",
",",
"timestam... | set the mtime of a file | [
"set",
"the",
"mtime",
"of",
"a",
"file"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/venv_update.py#L328-L334 |
16,811 | Yelp/venv-update | venv_update.py | pip_faster | def pip_faster(venv_path, pip_command, install, bootstrap_deps):
"""install and run pip-faster"""
# activate the virtualenv
execfile_(venv_executable(venv_path, 'activate_this.py'))
# disable a useless warning
# FIXME: ensure a "true SSLContext" is available
from os import environ
environ['... | python | def pip_faster(venv_path, pip_command, install, bootstrap_deps):
"""install and run pip-faster"""
# activate the virtualenv
execfile_(venv_executable(venv_path, 'activate_this.py'))
# disable a useless warning
# FIXME: ensure a "true SSLContext" is available
from os import environ
environ['... | [
"def",
"pip_faster",
"(",
"venv_path",
",",
"pip_command",
",",
"install",
",",
"bootstrap_deps",
")",
":",
"# activate the virtualenv",
"execfile_",
"(",
"venv_executable",
"(",
"venv_path",
",",
"'activate_this.py'",
")",
")",
"# disable a useless warning",
"# FIXME: ... | install and run pip-faster | [
"install",
"and",
"run",
"pip",
"-",
"faster"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/venv_update.py#L408-L423 |
16,812 | Yelp/venv-update | venv_update.py | raise_on_failure | def raise_on_failure(mainfunc):
"""raise if and only if mainfunc fails"""
try:
errors = mainfunc()
if errors:
exit(errors)
except CalledProcessError as error:
exit(error.returncode)
except SystemExit as error:
if error.code:
raise
except Keyboa... | python | def raise_on_failure(mainfunc):
"""raise if and only if mainfunc fails"""
try:
errors = mainfunc()
if errors:
exit(errors)
except CalledProcessError as error:
exit(error.returncode)
except SystemExit as error:
if error.code:
raise
except Keyboa... | [
"def",
"raise_on_failure",
"(",
"mainfunc",
")",
":",
"try",
":",
"errors",
"=",
"mainfunc",
"(",
")",
"if",
"errors",
":",
"exit",
"(",
"errors",
")",
"except",
"CalledProcessError",
"as",
"error",
":",
"exit",
"(",
"error",
".",
"returncode",
")",
"exc... | raise if and only if mainfunc fails | [
"raise",
"if",
"and",
"only",
"if",
"mainfunc",
"fails"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/venv_update.py#L426-L438 |
16,813 | Yelp/venv-update | pip_faster.py | cache_installed_wheels | def cache_installed_wheels(index_url, installed_packages):
"""After installation, pip tells us what it installed and from where.
We build a structure that looks like
.cache/pip-faster/wheelhouse/$index_url/$wheel
"""
for installed_package in installed_packages:
if not _can_be_cached(instal... | python | def cache_installed_wheels(index_url, installed_packages):
"""After installation, pip tells us what it installed and from where.
We build a structure that looks like
.cache/pip-faster/wheelhouse/$index_url/$wheel
"""
for installed_package in installed_packages:
if not _can_be_cached(instal... | [
"def",
"cache_installed_wheels",
"(",
"index_url",
",",
"installed_packages",
")",
":",
"for",
"installed_package",
"in",
"installed_packages",
":",
"if",
"not",
"_can_be_cached",
"(",
"installed_package",
")",
":",
"continue",
"_store_wheel_in_cache",
"(",
"installed_p... | After installation, pip tells us what it installed and from where.
We build a structure that looks like
.cache/pip-faster/wheelhouse/$index_url/$wheel | [
"After",
"installation",
"pip",
"tells",
"us",
"what",
"it",
"installed",
"and",
"from",
"where",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L171-L181 |
16,814 | Yelp/venv-update | pip_faster.py | pip | def pip(args):
"""Run pip, in-process."""
from sys import stdout
stdout.write(colorize(('pip',) + args))
stdout.write('\n')
stdout.flush()
return pipmodule._internal.main(list(args)) | python | def pip(args):
"""Run pip, in-process."""
from sys import stdout
stdout.write(colorize(('pip',) + args))
stdout.write('\n')
stdout.flush()
return pipmodule._internal.main(list(args)) | [
"def",
"pip",
"(",
"args",
")",
":",
"from",
"sys",
"import",
"stdout",
"stdout",
".",
"write",
"(",
"colorize",
"(",
"(",
"'pip'",
",",
")",
"+",
"args",
")",
")",
"stdout",
".",
"write",
"(",
"'\\n'",
")",
"stdout",
".",
"flush",
"(",
")",
"ret... | Run pip, in-process. | [
"Run",
"pip",
"in",
"-",
"process",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L204-L211 |
16,815 | Yelp/venv-update | pip_faster.py | dist_to_req | def dist_to_req(dist):
"""Make a pip.FrozenRequirement from a pkg_resources distribution object"""
try: # :pragma:nocover: (pip>=10)
from pip._internal.operations.freeze import FrozenRequirement
except ImportError: # :pragma:nocover: (pip<10)
from pip import FrozenRequirement
# normal... | python | def dist_to_req(dist):
"""Make a pip.FrozenRequirement from a pkg_resources distribution object"""
try: # :pragma:nocover: (pip>=10)
from pip._internal.operations.freeze import FrozenRequirement
except ImportError: # :pragma:nocover: (pip<10)
from pip import FrozenRequirement
# normal... | [
"def",
"dist_to_req",
"(",
"dist",
")",
":",
"try",
":",
"# :pragma:nocover: (pip>=10)",
"from",
"pip",
".",
"_internal",
".",
"operations",
".",
"freeze",
"import",
"FrozenRequirement",
"except",
"ImportError",
":",
"# :pragma:nocover: (pip<10)",
"from",
"pip",
"im... | Make a pip.FrozenRequirement from a pkg_resources distribution object | [
"Make",
"a",
"pip",
".",
"FrozenRequirement",
"from",
"a",
"pkg_resources",
"distribution",
"object"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L214-L227 |
16,816 | Yelp/venv-update | pip_faster.py | req_cycle | def req_cycle(req):
"""is this requirement cyclic?"""
cls = req.__class__
seen = {req.name}
while isinstance(req.comes_from, cls):
req = req.comes_from
if req.name in seen:
return True
else:
seen.add(req.name)
return False | python | def req_cycle(req):
"""is this requirement cyclic?"""
cls = req.__class__
seen = {req.name}
while isinstance(req.comes_from, cls):
req = req.comes_from
if req.name in seen:
return True
else:
seen.add(req.name)
return False | [
"def",
"req_cycle",
"(",
"req",
")",
":",
"cls",
"=",
"req",
".",
"__class__",
"seen",
"=",
"{",
"req",
".",
"name",
"}",
"while",
"isinstance",
"(",
"req",
".",
"comes_from",
",",
"cls",
")",
":",
"req",
"=",
"req",
".",
"comes_from",
"if",
"req",... | is this requirement cyclic? | [
"is",
"this",
"requirement",
"cyclic?"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L283-L293 |
16,817 | Yelp/venv-update | pip_faster.py | pretty_req | def pretty_req(req):
"""
return a copy of a pip requirement that is a bit more readable,
at the expense of removing some of its data
"""
from copy import copy
req = copy(req)
req.link = None
req.satisfied_by = None
return req | python | def pretty_req(req):
"""
return a copy of a pip requirement that is a bit more readable,
at the expense of removing some of its data
"""
from copy import copy
req = copy(req)
req.link = None
req.satisfied_by = None
return req | [
"def",
"pretty_req",
"(",
"req",
")",
":",
"from",
"copy",
"import",
"copy",
"req",
"=",
"copy",
"(",
"req",
")",
"req",
".",
"link",
"=",
"None",
"req",
".",
"satisfied_by",
"=",
"None",
"return",
"req"
] | return a copy of a pip requirement that is a bit more readable,
at the expense of removing some of its data | [
"return",
"a",
"copy",
"of",
"a",
"pip",
"requirement",
"that",
"is",
"a",
"bit",
"more",
"readable",
"at",
"the",
"expense",
"of",
"removing",
"some",
"of",
"its",
"data"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L296-L305 |
16,818 | Yelp/venv-update | pip_faster.py | trace_requirements | def trace_requirements(requirements):
"""given an iterable of pip InstallRequirements,
return the set of required packages, given their transitive requirements.
"""
requirements = tuple(pretty_req(r) for r in requirements)
working_set = fresh_working_set()
# breadth-first traversal:
from co... | python | def trace_requirements(requirements):
"""given an iterable of pip InstallRequirements,
return the set of required packages, given their transitive requirements.
"""
requirements = tuple(pretty_req(r) for r in requirements)
working_set = fresh_working_set()
# breadth-first traversal:
from co... | [
"def",
"trace_requirements",
"(",
"requirements",
")",
":",
"requirements",
"=",
"tuple",
"(",
"pretty_req",
"(",
"r",
")",
"for",
"r",
"in",
"requirements",
")",
"working_set",
"=",
"fresh_working_set",
"(",
")",
"# breadth-first traversal:",
"from",
"collections... | given an iterable of pip InstallRequirements,
return the set of required packages, given their transitive requirements. | [
"given",
"an",
"iterable",
"of",
"pip",
"InstallRequirements",
"return",
"the",
"set",
"of",
"required",
"packages",
"given",
"their",
"transitive",
"requirements",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L312-L359 |
16,819 | Yelp/venv-update | pip_faster.py | patch | def patch(attrs, updates):
"""Perform a set of updates to a attribute dictionary, return the original values."""
orig = {}
for attr, value in updates:
orig[attr] = attrs[attr]
attrs[attr] = value
return orig | python | def patch(attrs, updates):
"""Perform a set of updates to a attribute dictionary, return the original values."""
orig = {}
for attr, value in updates:
orig[attr] = attrs[attr]
attrs[attr] = value
return orig | [
"def",
"patch",
"(",
"attrs",
",",
"updates",
")",
":",
"orig",
"=",
"{",
"}",
"for",
"attr",
",",
"value",
"in",
"updates",
":",
"orig",
"[",
"attr",
"]",
"=",
"attrs",
"[",
"attr",
"]",
"attrs",
"[",
"attr",
"]",
"=",
"value",
"return",
"orig"
... | Perform a set of updates to a attribute dictionary, return the original values. | [
"Perform",
"a",
"set",
"of",
"updates",
"to",
"a",
"attribute",
"dictionary",
"return",
"the",
"original",
"values",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L430-L436 |
16,820 | Yelp/venv-update | pip_faster.py | patched | def patched(attrs, updates):
"""A context in which some attributes temporarily have a modified value."""
orig = patch(attrs, updates.items())
try:
yield orig
finally:
patch(attrs, orig.items()) | python | def patched(attrs, updates):
"""A context in which some attributes temporarily have a modified value."""
orig = patch(attrs, updates.items())
try:
yield orig
finally:
patch(attrs, orig.items()) | [
"def",
"patched",
"(",
"attrs",
",",
"updates",
")",
":",
"orig",
"=",
"patch",
"(",
"attrs",
",",
"updates",
".",
"items",
"(",
")",
")",
"try",
":",
"yield",
"orig",
"finally",
":",
"patch",
"(",
"attrs",
",",
"orig",
".",
"items",
"(",
")",
")... | A context in which some attributes temporarily have a modified value. | [
"A",
"context",
"in",
"which",
"some",
"attributes",
"temporarily",
"have",
"a",
"modified",
"value",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L440-L446 |
16,821 | Yelp/venv-update | pip_faster.py | pipfaster_packagefinder | def pipfaster_packagefinder():
"""Provide a short-circuited search when the requirement is pinned and appears on disk.
Suggested upstream at: https://github.com/pypa/pip/pull/2114
"""
# A poor man's dependency injection: monkeypatch :(
try: # :pragma:nocover: pip>=18.1
from pip._internal.c... | python | def pipfaster_packagefinder():
"""Provide a short-circuited search when the requirement is pinned and appears on disk.
Suggested upstream at: https://github.com/pypa/pip/pull/2114
"""
# A poor man's dependency injection: monkeypatch :(
try: # :pragma:nocover: pip>=18.1
from pip._internal.c... | [
"def",
"pipfaster_packagefinder",
"(",
")",
":",
"# A poor man's dependency injection: monkeypatch :(",
"try",
":",
"# :pragma:nocover: pip>=18.1",
"from",
"pip",
".",
"_internal",
".",
"cli",
"import",
"base_command",
"except",
"ImportError",
":",
"# :pragma:nocover: pip<18.... | Provide a short-circuited search when the requirement is pinned and appears on disk.
Suggested upstream at: https://github.com/pypa/pip/pull/2114 | [
"Provide",
"a",
"short",
"-",
"circuited",
"search",
"when",
"the",
"requirement",
"is",
"pinned",
"and",
"appears",
"on",
"disk",
"."
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L454-L464 |
16,822 | Yelp/venv-update | pip_faster.py | pipfaster_download_cacher | def pipfaster_download_cacher(index_urls):
"""vanilla pip stores a cache of the http session in its cache and not the
wheel files. We intercept the download and save those files into our
cache
"""
from pip._internal import download
orig = download._download_http_url
patched_fn = get_patched... | python | def pipfaster_download_cacher(index_urls):
"""vanilla pip stores a cache of the http session in its cache and not the
wheel files. We intercept the download and save those files into our
cache
"""
from pip._internal import download
orig = download._download_http_url
patched_fn = get_patched... | [
"def",
"pipfaster_download_cacher",
"(",
"index_urls",
")",
":",
"from",
"pip",
".",
"_internal",
"import",
"download",
"orig",
"=",
"download",
".",
"_download_http_url",
"patched_fn",
"=",
"get_patched_download_http_url",
"(",
"orig",
",",
"index_urls",
")",
"retu... | vanilla pip stores a cache of the http session in its cache and not the
wheel files. We intercept the download and save those files into our
cache | [
"vanilla",
"pip",
"stores",
"a",
"cache",
"of",
"the",
"http",
"session",
"in",
"its",
"cache",
"and",
"not",
"the",
"wheel",
"files",
".",
"We",
"intercept",
"the",
"download",
"and",
"save",
"those",
"files",
"into",
"our",
"cache"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L467-L475 |
16,823 | Yelp/venv-update | pip_faster.py | FasterInstallCommand.run | def run(self, options, args):
"""update install options with caching values"""
if options.prune:
previously_installed = pip_get_installed()
index_urls = [options.index_url] + options.extra_index_urls
with pipfaster_download_cacher(index_urls):
requirement_set = s... | python | def run(self, options, args):
"""update install options with caching values"""
if options.prune:
previously_installed = pip_get_installed()
index_urls = [options.index_url] + options.extra_index_urls
with pipfaster_download_cacher(index_urls):
requirement_set = s... | [
"def",
"run",
"(",
"self",
",",
"options",
",",
"args",
")",
":",
"if",
"options",
".",
"prune",
":",
"previously_installed",
"=",
"pip_get_installed",
"(",
")",
"index_urls",
"=",
"[",
"options",
".",
"index_url",
"]",
"+",
"options",
".",
"extra_index_ur... | update install options with caching values | [
"update",
"install",
"options",
"with",
"caching",
"values"
] | 6feae7ab09ee870c582b97443cfa8f0dc8626ba7 | https://github.com/Yelp/venv-update/blob/6feae7ab09ee870c582b97443cfa8f0dc8626ba7/pip_faster.py#L387-L423 |
16,824 | RedisJSON/rejson-py | rejson/client.py | Client.setEncoder | def setEncoder(self, encoder):
"""
Sets the client's encoder
``encoder`` should be an instance of a ``json.JSONEncoder`` class
"""
if not encoder:
self._encoder = json.JSONEncoder()
else:
self._encoder = encoder
self._encode = self._encoder... | python | def setEncoder(self, encoder):
"""
Sets the client's encoder
``encoder`` should be an instance of a ``json.JSONEncoder`` class
"""
if not encoder:
self._encoder = json.JSONEncoder()
else:
self._encoder = encoder
self._encode = self._encoder... | [
"def",
"setEncoder",
"(",
"self",
",",
"encoder",
")",
":",
"if",
"not",
"encoder",
":",
"self",
".",
"_encoder",
"=",
"json",
".",
"JSONEncoder",
"(",
")",
"else",
":",
"self",
".",
"_encoder",
"=",
"encoder",
"self",
".",
"_encode",
"=",
"self",
".... | Sets the client's encoder
``encoder`` should be an instance of a ``json.JSONEncoder`` class | [
"Sets",
"the",
"client",
"s",
"encoder",
"encoder",
"should",
"be",
"an",
"instance",
"of",
"a",
"json",
".",
"JSONEncoder",
"class"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L78-L87 |
16,825 | RedisJSON/rejson-py | rejson/client.py | Client.setDecoder | def setDecoder(self, decoder):
"""
Sets the client's decoder
``decoder`` should be an instance of a ``json.JSONDecoder`` class
"""
if not decoder:
self._decoder = json.JSONDecoder()
else:
self._decoder = decoder
self._decode = self._decoder... | python | def setDecoder(self, decoder):
"""
Sets the client's decoder
``decoder`` should be an instance of a ``json.JSONDecoder`` class
"""
if not decoder:
self._decoder = json.JSONDecoder()
else:
self._decoder = decoder
self._decode = self._decoder... | [
"def",
"setDecoder",
"(",
"self",
",",
"decoder",
")",
":",
"if",
"not",
"decoder",
":",
"self",
".",
"_decoder",
"=",
"json",
".",
"JSONDecoder",
"(",
")",
"else",
":",
"self",
".",
"_decoder",
"=",
"decoder",
"self",
".",
"_decode",
"=",
"self",
".... | Sets the client's decoder
``decoder`` should be an instance of a ``json.JSONDecoder`` class | [
"Sets",
"the",
"client",
"s",
"decoder",
"decoder",
"should",
"be",
"an",
"instance",
"of",
"a",
"json",
".",
"JSONDecoder",
"class"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L89-L98 |
16,826 | RedisJSON/rejson-py | rejson/client.py | Client.jsondel | def jsondel(self, name, path=Path.rootPath()):
"""
Deletes the JSON value stored at key ``name`` under ``path``
"""
return self.execute_command('JSON.DEL', name, str_path(path)) | python | def jsondel(self, name, path=Path.rootPath()):
"""
Deletes the JSON value stored at key ``name`` under ``path``
"""
return self.execute_command('JSON.DEL', name, str_path(path)) | [
"def",
"jsondel",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.DEL'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
")"
] | Deletes the JSON value stored at key ``name`` under ``path`` | [
"Deletes",
"the",
"JSON",
"value",
"stored",
"at",
"key",
"name",
"under",
"path"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L100-L104 |
16,827 | RedisJSON/rejson-py | rejson/client.py | Client.jsonget | def jsonget(self, name, *args):
"""
Get the object stored as a JSON value at key ``name``
``args`` is zero or more paths, and defaults to root path
"""
pieces = [name]
if len(args) == 0:
pieces.append(Path.rootPath())
else:
for p in args:
... | python | def jsonget(self, name, *args):
"""
Get the object stored as a JSON value at key ``name``
``args`` is zero or more paths, and defaults to root path
"""
pieces = [name]
if len(args) == 0:
pieces.append(Path.rootPath())
else:
for p in args:
... | [
"def",
"jsonget",
"(",
"self",
",",
"name",
",",
"*",
"args",
")",
":",
"pieces",
"=",
"[",
"name",
"]",
"if",
"len",
"(",
"args",
")",
"==",
"0",
":",
"pieces",
".",
"append",
"(",
"Path",
".",
"rootPath",
"(",
")",
")",
"else",
":",
"for",
... | Get the object stored as a JSON value at key ``name``
``args`` is zero or more paths, and defaults to root path | [
"Get",
"the",
"object",
"stored",
"as",
"a",
"JSON",
"value",
"at",
"key",
"name",
"args",
"is",
"zero",
"or",
"more",
"paths",
"and",
"defaults",
"to",
"root",
"path"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L106-L123 |
16,828 | RedisJSON/rejson-py | rejson/client.py | Client.jsonmget | def jsonmget(self, path, *args):
"""
Gets the objects stored as a JSON values under ``path`` from
keys ``args``
"""
pieces = []
pieces.extend(args)
pieces.append(str_path(path))
return self.execute_command('JSON.MGET', *pieces) | python | def jsonmget(self, path, *args):
"""
Gets the objects stored as a JSON values under ``path`` from
keys ``args``
"""
pieces = []
pieces.extend(args)
pieces.append(str_path(path))
return self.execute_command('JSON.MGET', *pieces) | [
"def",
"jsonmget",
"(",
"self",
",",
"path",
",",
"*",
"args",
")",
":",
"pieces",
"=",
"[",
"]",
"pieces",
".",
"extend",
"(",
"args",
")",
"pieces",
".",
"append",
"(",
"str_path",
"(",
"path",
")",
")",
"return",
"self",
".",
"execute_command",
... | Gets the objects stored as a JSON values under ``path`` from
keys ``args`` | [
"Gets",
"the",
"objects",
"stored",
"as",
"a",
"JSON",
"values",
"under",
"path",
"from",
"keys",
"args"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L125-L133 |
16,829 | RedisJSON/rejson-py | rejson/client.py | Client.jsonset | def jsonset(self, name, path, obj, nx=False, xx=False):
"""
Set the JSON value at key ``name`` under the ``path`` to ``obj``
``nx`` if set to True, set ``value`` only if it does not exist
``xx`` if set to True, set ``value`` only if it exists
"""
pieces = [name, str_path(... | python | def jsonset(self, name, path, obj, nx=False, xx=False):
"""
Set the JSON value at key ``name`` under the ``path`` to ``obj``
``nx`` if set to True, set ``value`` only if it does not exist
``xx`` if set to True, set ``value`` only if it exists
"""
pieces = [name, str_path(... | [
"def",
"jsonset",
"(",
"self",
",",
"name",
",",
"path",
",",
"obj",
",",
"nx",
"=",
"False",
",",
"xx",
"=",
"False",
")",
":",
"pieces",
"=",
"[",
"name",
",",
"str_path",
"(",
"path",
")",
",",
"self",
".",
"_encode",
"(",
"obj",
")",
"]",
... | Set the JSON value at key ``name`` under the ``path`` to ``obj``
``nx`` if set to True, set ``value`` only if it does not exist
``xx`` if set to True, set ``value`` only if it exists | [
"Set",
"the",
"JSON",
"value",
"at",
"key",
"name",
"under",
"the",
"path",
"to",
"obj",
"nx",
"if",
"set",
"to",
"True",
"set",
"value",
"only",
"if",
"it",
"does",
"not",
"exist",
"xx",
"if",
"set",
"to",
"True",
"set",
"value",
"only",
"if",
"it... | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L135-L151 |
16,830 | RedisJSON/rejson-py | rejson/client.py | Client.jsontype | def jsontype(self, name, path=Path.rootPath()):
"""
Gets the type of the JSON value under ``path`` from key ``name``
"""
return self.execute_command('JSON.TYPE', name, str_path(path)) | python | def jsontype(self, name, path=Path.rootPath()):
"""
Gets the type of the JSON value under ``path`` from key ``name``
"""
return self.execute_command('JSON.TYPE', name, str_path(path)) | [
"def",
"jsontype",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.TYPE'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
")"
] | Gets the type of the JSON value under ``path`` from key ``name`` | [
"Gets",
"the",
"type",
"of",
"the",
"JSON",
"value",
"under",
"path",
"from",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L153-L157 |
16,831 | RedisJSON/rejson-py | rejson/client.py | Client.jsonstrappend | def jsonstrappend(self, name, string, path=Path.rootPath()):
"""
Appends to the string JSON value under ``path`` at key ``name`` the
provided ``string``
"""
return self.execute_command('JSON.STRAPPEND', name, str_path(path), self._encode(string)) | python | def jsonstrappend(self, name, string, path=Path.rootPath()):
"""
Appends to the string JSON value under ``path`` at key ``name`` the
provided ``string``
"""
return self.execute_command('JSON.STRAPPEND', name, str_path(path), self._encode(string)) | [
"def",
"jsonstrappend",
"(",
"self",
",",
"name",
",",
"string",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.STRAPPEND'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
",",
"sel... | Appends to the string JSON value under ``path`` at key ``name`` the
provided ``string`` | [
"Appends",
"to",
"the",
"string",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name",
"the",
"provided",
"string"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L173-L178 |
16,832 | RedisJSON/rejson-py | rejson/client.py | Client.jsonstrlen | def jsonstrlen(self, name, path=Path.rootPath()):
"""
Returns the length of the string JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.STRLEN', name, str_path(path)) | python | def jsonstrlen(self, name, path=Path.rootPath()):
"""
Returns the length of the string JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.STRLEN', name, str_path(path)) | [
"def",
"jsonstrlen",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.STRLEN'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
")"
] | Returns the length of the string JSON value under ``path`` at key
``name`` | [
"Returns",
"the",
"length",
"of",
"the",
"string",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L180-L185 |
16,833 | RedisJSON/rejson-py | rejson/client.py | Client.jsonarrappend | def jsonarrappend(self, name, path=Path.rootPath(), *args):
"""
Appends the objects ``args`` to the array under the ``path` in key
``name``
"""
pieces = [name, str_path(path)]
for o in args:
pieces.append(self._encode(o))
return self.execute_command('J... | python | def jsonarrappend(self, name, path=Path.rootPath(), *args):
"""
Appends the objects ``args`` to the array under the ``path` in key
``name``
"""
pieces = [name, str_path(path)]
for o in args:
pieces.append(self._encode(o))
return self.execute_command('J... | [
"def",
"jsonarrappend",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
",",
"*",
"args",
")",
":",
"pieces",
"=",
"[",
"name",
",",
"str_path",
"(",
"path",
")",
"]",
"for",
"o",
"in",
"args",
":",
"pieces",
".",
... | Appends the objects ``args`` to the array under the ``path` in key
``name`` | [
"Appends",
"the",
"objects",
"args",
"to",
"the",
"array",
"under",
"the",
"path",
"in",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L187-L195 |
16,834 | RedisJSON/rejson-py | rejson/client.py | Client.jsonarrindex | def jsonarrindex(self, name, path, scalar, start=0, stop=-1):
"""
Returns the index of ``scalar`` in the JSON array under ``path`` at key
``name``. The search can be limited using the optional inclusive
``start`` and exclusive ``stop`` indices.
"""
return self.execute_com... | python | def jsonarrindex(self, name, path, scalar, start=0, stop=-1):
"""
Returns the index of ``scalar`` in the JSON array under ``path`` at key
``name``. The search can be limited using the optional inclusive
``start`` and exclusive ``stop`` indices.
"""
return self.execute_com... | [
"def",
"jsonarrindex",
"(",
"self",
",",
"name",
",",
"path",
",",
"scalar",
",",
"start",
"=",
"0",
",",
"stop",
"=",
"-",
"1",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.ARRINDEX'",
",",
"name",
",",
"str_path",
"(",
"path",
")... | Returns the index of ``scalar`` in the JSON array under ``path`` at key
``name``. The search can be limited using the optional inclusive
``start`` and exclusive ``stop`` indices. | [
"Returns",
"the",
"index",
"of",
"scalar",
"in",
"the",
"JSON",
"array",
"under",
"path",
"at",
"key",
"name",
".",
"The",
"search",
"can",
"be",
"limited",
"using",
"the",
"optional",
"inclusive",
"start",
"and",
"exclusive",
"stop",
"indices",
"."
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L197-L203 |
16,835 | RedisJSON/rejson-py | rejson/client.py | Client.jsonarrinsert | def jsonarrinsert(self, name, path, index, *args):
"""
Inserts the objects ``args`` to the array at index ``index`` under the
``path` in key ``name``
"""
pieces = [name, str_path(path), index]
for o in args:
pieces.append(self._encode(o))
return self.e... | python | def jsonarrinsert(self, name, path, index, *args):
"""
Inserts the objects ``args`` to the array at index ``index`` under the
``path` in key ``name``
"""
pieces = [name, str_path(path), index]
for o in args:
pieces.append(self._encode(o))
return self.e... | [
"def",
"jsonarrinsert",
"(",
"self",
",",
"name",
",",
"path",
",",
"index",
",",
"*",
"args",
")",
":",
"pieces",
"=",
"[",
"name",
",",
"str_path",
"(",
"path",
")",
",",
"index",
"]",
"for",
"o",
"in",
"args",
":",
"pieces",
".",
"append",
"("... | Inserts the objects ``args`` to the array at index ``index`` under the
``path` in key ``name`` | [
"Inserts",
"the",
"objects",
"args",
"to",
"the",
"array",
"at",
"index",
"index",
"under",
"the",
"path",
"in",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L205-L213 |
16,836 | RedisJSON/rejson-py | rejson/client.py | Client.jsonarrlen | def jsonarrlen(self, name, path=Path.rootPath()):
"""
Returns the length of the array JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.ARRLEN', name, str_path(path)) | python | def jsonarrlen(self, name, path=Path.rootPath()):
"""
Returns the length of the array JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.ARRLEN', name, str_path(path)) | [
"def",
"jsonarrlen",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.ARRLEN'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
")"
] | Returns the length of the array JSON value under ``path`` at key
``name`` | [
"Returns",
"the",
"length",
"of",
"the",
"array",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L215-L220 |
16,837 | RedisJSON/rejson-py | rejson/client.py | Client.jsonarrpop | def jsonarrpop(self, name, path=Path.rootPath(), index=-1):
"""
Pops the element at ``index`` in the array JSON value under ``path`` at
key ``name``
"""
return self.execute_command('JSON.ARRPOP', name, str_path(path), index) | python | def jsonarrpop(self, name, path=Path.rootPath(), index=-1):
"""
Pops the element at ``index`` in the array JSON value under ``path`` at
key ``name``
"""
return self.execute_command('JSON.ARRPOP', name, str_path(path), index) | [
"def",
"jsonarrpop",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
",",
"index",
"=",
"-",
"1",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.ARRPOP'",
",",
"name",
",",
"str_path",
"(",
"path",
")",... | Pops the element at ``index`` in the array JSON value under ``path`` at
key ``name`` | [
"Pops",
"the",
"element",
"at",
"index",
"in",
"the",
"array",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L222-L227 |
16,838 | RedisJSON/rejson-py | rejson/client.py | Client.jsonarrtrim | def jsonarrtrim(self, name, path, start, stop):
"""
Trim the array JSON value under ``path`` at key ``name`` to the
inclusive range given by ``start`` and ``stop``
"""
return self.execute_command('JSON.ARRTRIM', name, str_path(path), start, stop) | python | def jsonarrtrim(self, name, path, start, stop):
"""
Trim the array JSON value under ``path`` at key ``name`` to the
inclusive range given by ``start`` and ``stop``
"""
return self.execute_command('JSON.ARRTRIM', name, str_path(path), start, stop) | [
"def",
"jsonarrtrim",
"(",
"self",
",",
"name",
",",
"path",
",",
"start",
",",
"stop",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.ARRTRIM'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
",",
"start",
",",
"stop",
")"
] | Trim the array JSON value under ``path`` at key ``name`` to the
inclusive range given by ``start`` and ``stop`` | [
"Trim",
"the",
"array",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name",
"to",
"the",
"inclusive",
"range",
"given",
"by",
"start",
"and",
"stop"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L229-L234 |
16,839 | RedisJSON/rejson-py | rejson/client.py | Client.jsonobjkeys | def jsonobjkeys(self, name, path=Path.rootPath()):
"""
Returns the key names in the dictionary JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.OBJKEYS', name, str_path(path)) | python | def jsonobjkeys(self, name, path=Path.rootPath()):
"""
Returns the key names in the dictionary JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.OBJKEYS', name, str_path(path)) | [
"def",
"jsonobjkeys",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.OBJKEYS'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
")"
] | Returns the key names in the dictionary JSON value under ``path`` at key
``name`` | [
"Returns",
"the",
"key",
"names",
"in",
"the",
"dictionary",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L236-L241 |
16,840 | RedisJSON/rejson-py | rejson/client.py | Client.jsonobjlen | def jsonobjlen(self, name, path=Path.rootPath()):
"""
Returns the length of the dictionary JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.OBJLEN', name, str_path(path)) | python | def jsonobjlen(self, name, path=Path.rootPath()):
"""
Returns the length of the dictionary JSON value under ``path`` at key
``name``
"""
return self.execute_command('JSON.OBJLEN', name, str_path(path)) | [
"def",
"jsonobjlen",
"(",
"self",
",",
"name",
",",
"path",
"=",
"Path",
".",
"rootPath",
"(",
")",
")",
":",
"return",
"self",
".",
"execute_command",
"(",
"'JSON.OBJLEN'",
",",
"name",
",",
"str_path",
"(",
"path",
")",
")"
] | Returns the length of the dictionary JSON value under ``path`` at key
``name`` | [
"Returns",
"the",
"length",
"of",
"the",
"dictionary",
"JSON",
"value",
"under",
"path",
"at",
"key",
"name"
] | 55f0adf3adc40f5a769e28e541dbbf5377b90ec6 | https://github.com/RedisJSON/rejson-py/blob/55f0adf3adc40f5a769e28e541dbbf5377b90ec6/rejson/client.py#L243-L248 |
16,841 | mitodl/django-server-status | server_status/views.py | get_pg_info | def get_pg_info():
"""Check PostgreSQL connection."""
from psycopg2 import connect, OperationalError
log.debug("entered get_pg_info")
try:
conf = settings.DATABASES['default']
database = conf["NAME"]
user = conf["USER"]
host = conf["HOST"]
port = conf["PORT"]
... | python | def get_pg_info():
"""Check PostgreSQL connection."""
from psycopg2 import connect, OperationalError
log.debug("entered get_pg_info")
try:
conf = settings.DATABASES['default']
database = conf["NAME"]
user = conf["USER"]
host = conf["HOST"]
port = conf["PORT"]
... | [
"def",
"get_pg_info",
"(",
")",
":",
"from",
"psycopg2",
"import",
"connect",
",",
"OperationalError",
"log",
".",
"debug",
"(",
"\"entered get_pg_info\"",
")",
"try",
":",
"conf",
"=",
"settings",
".",
"DATABASES",
"[",
"'default'",
"]",
"database",
"=",
"c... | Check PostgreSQL connection. | [
"Check",
"PostgreSQL",
"connection",
"."
] | 99bd29343138f94a08718fdbd9285e551751777b | https://github.com/mitodl/django-server-status/blob/99bd29343138f94a08718fdbd9285e551751777b/server_status/views.py#L30-L61 |
16,842 | mitodl/django-server-status | server_status/views.py | get_redis_info | def get_redis_info():
"""Check Redis connection."""
from kombu.utils.url import _parse_url as parse_redis_url
from redis import (
StrictRedis,
ConnectionError as RedisConnectionError,
ResponseError as RedisResponseError,
)
for conf_name in ('REDIS_URL', 'BROKER_URL', 'CELERY_... | python | def get_redis_info():
"""Check Redis connection."""
from kombu.utils.url import _parse_url as parse_redis_url
from redis import (
StrictRedis,
ConnectionError as RedisConnectionError,
ResponseError as RedisResponseError,
)
for conf_name in ('REDIS_URL', 'BROKER_URL', 'CELERY_... | [
"def",
"get_redis_info",
"(",
")",
":",
"from",
"kombu",
".",
"utils",
".",
"url",
"import",
"_parse_url",
"as",
"parse_redis_url",
"from",
"redis",
"import",
"(",
"StrictRedis",
",",
"ConnectionError",
"as",
"RedisConnectionError",
",",
"ResponseError",
"as",
"... | Check Redis connection. | [
"Check",
"Redis",
"connection",
"."
] | 99bd29343138f94a08718fdbd9285e551751777b | https://github.com/mitodl/django-server-status/blob/99bd29343138f94a08718fdbd9285e551751777b/server_status/views.py#L64-L102 |
16,843 | mitodl/django-server-status | server_status/views.py | get_elasticsearch_info | def get_elasticsearch_info():
"""Check Elasticsearch connection."""
from elasticsearch import (
Elasticsearch,
ConnectionError as ESConnectionError
)
if hasattr(settings, 'ELASTICSEARCH_URL'):
url = settings.ELASTICSEARCH_URL
else:
return {"status": NO_CONFIG}
sta... | python | def get_elasticsearch_info():
"""Check Elasticsearch connection."""
from elasticsearch import (
Elasticsearch,
ConnectionError as ESConnectionError
)
if hasattr(settings, 'ELASTICSEARCH_URL'):
url = settings.ELASTICSEARCH_URL
else:
return {"status": NO_CONFIG}
sta... | [
"def",
"get_elasticsearch_info",
"(",
")",
":",
"from",
"elasticsearch",
"import",
"(",
"Elasticsearch",
",",
"ConnectionError",
"as",
"ESConnectionError",
")",
"if",
"hasattr",
"(",
"settings",
",",
"'ELASTICSEARCH_URL'",
")",
":",
"url",
"=",
"settings",
".",
... | Check Elasticsearch connection. | [
"Check",
"Elasticsearch",
"connection",
"."
] | 99bd29343138f94a08718fdbd9285e551751777b | https://github.com/mitodl/django-server-status/blob/99bd29343138f94a08718fdbd9285e551751777b/server_status/views.py#L105-L125 |
16,844 | mitodl/django-server-status | server_status/views.py | get_celery_info | def get_celery_info():
"""
Check celery availability
"""
import celery
if not getattr(settings, 'USE_CELERY', False):
log.error("No celery config found. Set USE_CELERY in settings to enable.")
return {"status": NO_CONFIG}
start = datetime.now()
try:
# pylint: disable=... | python | def get_celery_info():
"""
Check celery availability
"""
import celery
if not getattr(settings, 'USE_CELERY', False):
log.error("No celery config found. Set USE_CELERY in settings to enable.")
return {"status": NO_CONFIG}
start = datetime.now()
try:
# pylint: disable=... | [
"def",
"get_celery_info",
"(",
")",
":",
"import",
"celery",
"if",
"not",
"getattr",
"(",
"settings",
",",
"'USE_CELERY'",
",",
"False",
")",
":",
"log",
".",
"error",
"(",
"\"No celery config found. Set USE_CELERY in settings to enable.\"",
")",
"return",
"{",
"\... | Check celery availability | [
"Check",
"celery",
"availability"
] | 99bd29343138f94a08718fdbd9285e551751777b | https://github.com/mitodl/django-server-status/blob/99bd29343138f94a08718fdbd9285e551751777b/server_status/views.py#L128-L153 |
16,845 | mitodl/django-server-status | server_status/views.py | get_certificate_info | def get_certificate_info():
"""
checks app certificate expiry status
"""
if hasattr(settings, 'MIT_WS_CERTIFICATE') and settings.MIT_WS_CERTIFICATE:
mit_ws_certificate = settings.MIT_WS_CERTIFICATE
else:
return {"status": NO_CONFIG}
app_cert = OpenSSL.crypto.load_certificate(
... | python | def get_certificate_info():
"""
checks app certificate expiry status
"""
if hasattr(settings, 'MIT_WS_CERTIFICATE') and settings.MIT_WS_CERTIFICATE:
mit_ws_certificate = settings.MIT_WS_CERTIFICATE
else:
return {"status": NO_CONFIG}
app_cert = OpenSSL.crypto.load_certificate(
... | [
"def",
"get_certificate_info",
"(",
")",
":",
"if",
"hasattr",
"(",
"settings",
",",
"'MIT_WS_CERTIFICATE'",
")",
"and",
"settings",
".",
"MIT_WS_CERTIFICATE",
":",
"mit_ws_certificate",
"=",
"settings",
".",
"MIT_WS_CERTIFICATE",
"else",
":",
"return",
"{",
"\"st... | checks app certificate expiry status | [
"checks",
"app",
"certificate",
"expiry",
"status"
] | 99bd29343138f94a08718fdbd9285e551751777b | https://github.com/mitodl/django-server-status/blob/99bd29343138f94a08718fdbd9285e551751777b/server_status/views.py#L156-L182 |
16,846 | bitcaster-io/bitcaster | src/telebot/__init__.py | TeleBot._start | def _start(self):
'''Requests bot information based on current api_key, and sets
self.whoami to dictionary with username, first_name, and id of the
configured bot.
'''
if self.whoami is None:
me = self.get_me()
if me.get('ok', False):
self... | python | def _start(self):
'''Requests bot information based on current api_key, and sets
self.whoami to dictionary with username, first_name, and id of the
configured bot.
'''
if self.whoami is None:
me = self.get_me()
if me.get('ok', False):
self... | [
"def",
"_start",
"(",
"self",
")",
":",
"if",
"self",
".",
"whoami",
"is",
"None",
":",
"me",
"=",
"self",
".",
"get_me",
"(",
")",
"if",
"me",
".",
"get",
"(",
"'ok'",
",",
"False",
")",
":",
"self",
".",
"whoami",
"=",
"me",
"[",
"'result'",
... | Requests bot information based on current api_key, and sets
self.whoami to dictionary with username, first_name, and id of the
configured bot. | [
"Requests",
"bot",
"information",
"based",
"on",
"current",
"api_key",
"and",
"sets",
"self",
".",
"whoami",
"to",
"dictionary",
"with",
"username",
"first_name",
"and",
"id",
"of",
"the",
"configured",
"bot",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/telebot/__init__.py#L74-L86 |
16,847 | bitcaster-io/bitcaster | src/telebot/__init__.py | TeleBot.poll | def poll(self, offset=None, poll_timeout=600, cooldown=60, debug=False):
'''These should also be in the config section, but some here for
overrides
'''
if self.config['api_key'] is None:
raise ValueError('config api_key is undefined')
if offset or self.config.get('o... | python | def poll(self, offset=None, poll_timeout=600, cooldown=60, debug=False):
'''These should also be in the config section, but some here for
overrides
'''
if self.config['api_key'] is None:
raise ValueError('config api_key is undefined')
if offset or self.config.get('o... | [
"def",
"poll",
"(",
"self",
",",
"offset",
"=",
"None",
",",
"poll_timeout",
"=",
"600",
",",
"cooldown",
"=",
"60",
",",
"debug",
"=",
"False",
")",
":",
"if",
"self",
".",
"config",
"[",
"'api_key'",
"]",
"is",
"None",
":",
"raise",
"ValueError",
... | These should also be in the config section, but some here for
overrides | [
"These",
"should",
"also",
"be",
"in",
"the",
"config",
"section",
"but",
"some",
"here",
"for",
"overrides"
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/telebot/__init__.py#L88-L114 |
16,848 | bitcaster-io/bitcaster | src/bitcaster/utils/language.py | get_attr | def get_attr(obj, attr, default=None):
"""Recursive get object's attribute. May use dot notation.
>>> class C(object): pass
>>> a = C()
>>> a.b = C()
>>> a.b.c = 4
>>> get_attr(a, 'b.c')
4
>>> get_attr(a, 'b.c.y', None)
>>> get_attr(a, 'b.c.y', 1)
1
"""
if '.' not in a... | python | def get_attr(obj, attr, default=None):
"""Recursive get object's attribute. May use dot notation.
>>> class C(object): pass
>>> a = C()
>>> a.b = C()
>>> a.b.c = 4
>>> get_attr(a, 'b.c')
4
>>> get_attr(a, 'b.c.y', None)
>>> get_attr(a, 'b.c.y', 1)
1
"""
if '.' not in a... | [
"def",
"get_attr",
"(",
"obj",
",",
"attr",
",",
"default",
"=",
"None",
")",
":",
"if",
"'.'",
"not",
"in",
"attr",
":",
"return",
"getattr",
"(",
"obj",
",",
"attr",
",",
"default",
")",
"else",
":",
"L",
"=",
"attr",
".",
"split",
"(",
"'.'",
... | Recursive get object's attribute. May use dot notation.
>>> class C(object): pass
>>> a = C()
>>> a.b = C()
>>> a.b.c = 4
>>> get_attr(a, 'b.c')
4
>>> get_attr(a, 'b.c.y', None)
>>> get_attr(a, 'b.c.y', 1)
1 | [
"Recursive",
"get",
"object",
"s",
"attribute",
".",
"May",
"use",
"dot",
"notation",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/utils/language.py#L32-L51 |
16,849 | bitcaster-io/bitcaster | src/bitcaster/web/templatetags/bc_assets.py | asset | def asset(path):
"""
Join the given path with the STATIC_URL setting.
Usage::
{% static path [as varname] %}
Examples::
{% static "myapp/css/base.css" %}
{% static variable_with_path %}
{% static "myapp/css/base.css" as admin_base_css %}
{% static variable_wit... | python | def asset(path):
"""
Join the given path with the STATIC_URL setting.
Usage::
{% static path [as varname] %}
Examples::
{% static "myapp/css/base.css" %}
{% static variable_with_path %}
{% static "myapp/css/base.css" as admin_base_css %}
{% static variable_wit... | [
"def",
"asset",
"(",
"path",
")",
":",
"commit",
"=",
"bitcaster",
".",
"get_full_version",
"(",
")",
"return",
"mark_safe",
"(",
"'{0}?{1}'",
".",
"format",
"(",
"_static",
"(",
"path",
")",
",",
"commit",
")",
")"
] | Join the given path with the STATIC_URL setting.
Usage::
{% static path [as varname] %}
Examples::
{% static "myapp/css/base.css" %}
{% static variable_with_path %}
{% static "myapp/css/base.css" as admin_base_css %}
{% static variable_with_path as varname %} | [
"Join",
"the",
"given",
"path",
"with",
"the",
"STATIC_URL",
"setting",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/web/templatetags/bc_assets.py#L19-L35 |
16,850 | bitcaster-io/bitcaster | src/bitcaster/utils/wsgi.py | get_client_ip | def get_client_ip(request):
"""
Naively yank the first IP address in an X-Forwarded-For header
and assume this is correct.
Note: Don't use this in security sensitive situations since this
value may be forged from a client.
"""
try:
return request.META['HTTP_X_FORWARDED_FOR'].split('... | python | def get_client_ip(request):
"""
Naively yank the first IP address in an X-Forwarded-For header
and assume this is correct.
Note: Don't use this in security sensitive situations since this
value may be forged from a client.
"""
try:
return request.META['HTTP_X_FORWARDED_FOR'].split('... | [
"def",
"get_client_ip",
"(",
"request",
")",
":",
"try",
":",
"return",
"request",
".",
"META",
"[",
"'HTTP_X_FORWARDED_FOR'",
"]",
".",
"split",
"(",
"','",
")",
"[",
"0",
"]",
".",
"strip",
"(",
")",
"except",
"(",
"KeyError",
",",
"IndexError",
")",... | Naively yank the first IP address in an X-Forwarded-For header
and assume this is correct.
Note: Don't use this in security sensitive situations since this
value may be forged from a client. | [
"Naively",
"yank",
"the",
"first",
"IP",
"address",
"in",
"an",
"X",
"-",
"Forwarded",
"-",
"For",
"header",
"and",
"assume",
"this",
"is",
"correct",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/utils/wsgi.py#L6-L17 |
16,851 | bitcaster-io/bitcaster | src/tweepy/api.py | API._pack_image | def _pack_image(filename, max_size, form_field='image', f=None):
"""Pack image from file into multipart-formdata post body"""
# image must be less than 700kb in size
if f is None:
try:
if os.path.getsize(filename) > (max_size * 1024):
raise TweepEr... | python | def _pack_image(filename, max_size, form_field='image', f=None):
"""Pack image from file into multipart-formdata post body"""
# image must be less than 700kb in size
if f is None:
try:
if os.path.getsize(filename) > (max_size * 1024):
raise TweepEr... | [
"def",
"_pack_image",
"(",
"filename",
",",
"max_size",
",",
"form_field",
"=",
"'image'",
",",
"f",
"=",
"None",
")",
":",
"# image must be less than 700kb in size",
"if",
"f",
"is",
"None",
":",
"try",
":",
"if",
"os",
".",
"path",
".",
"getsize",
"(",
... | Pack image from file into multipart-formdata post body | [
"Pack",
"image",
"from",
"file",
"into",
"multipart",
"-",
"formdata",
"post",
"body"
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/tweepy/api.py#L1344-L1394 |
16,852 | bitcaster-io/bitcaster | src/bitcaster/web/templatetags/bitcaster.py | channel_submit_row | def channel_submit_row(context):
"""
Display the row of buttons for delete and save.
"""
change = context['change']
is_popup = context['is_popup']
save_as = context['save_as']
show_save = context.get('show_save', True)
show_save_and_continue = context.get('show_save_and_continue', True)
... | python | def channel_submit_row(context):
"""
Display the row of buttons for delete and save.
"""
change = context['change']
is_popup = context['is_popup']
save_as = context['save_as']
show_save = context.get('show_save', True)
show_save_and_continue = context.get('show_save_and_continue', True)
... | [
"def",
"channel_submit_row",
"(",
"context",
")",
":",
"change",
"=",
"context",
"[",
"'change'",
"]",
"is_popup",
"=",
"context",
"[",
"'is_popup'",
"]",
"save_as",
"=",
"context",
"[",
"'save_as'",
"]",
"show_save",
"=",
"context",
".",
"get",
"(",
"'sho... | Display the row of buttons for delete and save. | [
"Display",
"the",
"row",
"of",
"buttons",
"for",
"delete",
"and",
"save",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/web/templatetags/bitcaster.py#L77-L106 |
16,853 | bitcaster-io/bitcaster | src/bitcaster/social_auth.py | BitcasterStrategy.get_setting | def get_setting(self, name):
notfound = object()
"get configuration from 'constance.config' first "
value = getattr(config, name, notfound)
if name.endswith('_WHITELISTED_DOMAINS'):
if value:
return value.split(',')
else:
return []
... | python | def get_setting(self, name):
notfound = object()
"get configuration from 'constance.config' first "
value = getattr(config, name, notfound)
if name.endswith('_WHITELISTED_DOMAINS'):
if value:
return value.split(',')
else:
return []
... | [
"def",
"get_setting",
"(",
"self",
",",
"name",
")",
":",
"notfound",
"=",
"object",
"(",
")",
"value",
"=",
"getattr",
"(",
"config",
",",
"name",
",",
"notfound",
")",
"if",
"name",
".",
"endswith",
"(",
"'_WHITELISTED_DOMAINS'",
")",
":",
"if",
"val... | get configuration from 'constance.config' first | [
"get",
"configuration",
"from",
"constance",
".",
"config",
"first"
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/social_auth.py#L78-L95 |
16,854 | bitcaster-io/bitcaster | src/bitcaster/messages.py | Wrapper.debug | def debug(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``DEBUG`` level."""
add(self.target_name, request, constants.DEBUG, message, extra_tags=extra_tags,
fail_silently=fail_silently) | python | def debug(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``DEBUG`` level."""
add(self.target_name, request, constants.DEBUG, message, extra_tags=extra_tags,
fail_silently=fail_silently) | [
"def",
"debug",
"(",
"self",
",",
"request",
",",
"message",
",",
"extra_tags",
"=",
"''",
",",
"fail_silently",
"=",
"False",
")",
":",
"add",
"(",
"self",
".",
"target_name",
",",
"request",
",",
"constants",
".",
"DEBUG",
",",
"message",
",",
"extra... | Add a message with the ``DEBUG`` level. | [
"Add",
"a",
"message",
"with",
"the",
"DEBUG",
"level",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/messages.py#L54-L57 |
16,855 | bitcaster-io/bitcaster | src/bitcaster/messages.py | Wrapper.info | def info(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``INFO`` level."""
add(self.target_name,
request, constants.INFO, message, extra_tags=extra_tags,
fail_silently=fail_silently) | python | def info(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``INFO`` level."""
add(self.target_name,
request, constants.INFO, message, extra_tags=extra_tags,
fail_silently=fail_silently) | [
"def",
"info",
"(",
"self",
",",
"request",
",",
"message",
",",
"extra_tags",
"=",
"''",
",",
"fail_silently",
"=",
"False",
")",
":",
"add",
"(",
"self",
".",
"target_name",
",",
"request",
",",
"constants",
".",
"INFO",
",",
"message",
",",
"extra_t... | Add a message with the ``INFO`` level. | [
"Add",
"a",
"message",
"with",
"the",
"INFO",
"level",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/messages.py#L59-L63 |
16,856 | bitcaster-io/bitcaster | src/bitcaster/messages.py | Wrapper.success | def success(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``SUCCESS`` level."""
add(self.target_name, request, constants.SUCCESS, message, extra_tags=extra_tags,
fail_silently=fail_silently) | python | def success(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``SUCCESS`` level."""
add(self.target_name, request, constants.SUCCESS, message, extra_tags=extra_tags,
fail_silently=fail_silently) | [
"def",
"success",
"(",
"self",
",",
"request",
",",
"message",
",",
"extra_tags",
"=",
"''",
",",
"fail_silently",
"=",
"False",
")",
":",
"add",
"(",
"self",
".",
"target_name",
",",
"request",
",",
"constants",
".",
"SUCCESS",
",",
"message",
",",
"e... | Add a message with the ``SUCCESS`` level. | [
"Add",
"a",
"message",
"with",
"the",
"SUCCESS",
"level",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/messages.py#L65-L68 |
16,857 | bitcaster-io/bitcaster | src/bitcaster/messages.py | Wrapper.warning | def warning(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``WARNING`` level."""
add(self.target_name, request, constants.WARNING, message, extra_tags=extra_tags,
fail_silently=fail_silently) | python | def warning(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``WARNING`` level."""
add(self.target_name, request, constants.WARNING, message, extra_tags=extra_tags,
fail_silently=fail_silently) | [
"def",
"warning",
"(",
"self",
",",
"request",
",",
"message",
",",
"extra_tags",
"=",
"''",
",",
"fail_silently",
"=",
"False",
")",
":",
"add",
"(",
"self",
".",
"target_name",
",",
"request",
",",
"constants",
".",
"WARNING",
",",
"message",
",",
"e... | Add a message with the ``WARNING`` level. | [
"Add",
"a",
"message",
"with",
"the",
"WARNING",
"level",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/messages.py#L70-L73 |
16,858 | bitcaster-io/bitcaster | src/bitcaster/messages.py | Wrapper.error | def error(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``ERROR`` level."""
add(self.target_name, request, constants.ERROR, message, extra_tags=extra_tags,
fail_silently=fail_silently) | python | def error(self, request, message, extra_tags='', fail_silently=False):
"""Add a message with the ``ERROR`` level."""
add(self.target_name, request, constants.ERROR, message, extra_tags=extra_tags,
fail_silently=fail_silently) | [
"def",
"error",
"(",
"self",
",",
"request",
",",
"message",
",",
"extra_tags",
"=",
"''",
",",
"fail_silently",
"=",
"False",
")",
":",
"add",
"(",
"self",
".",
"target_name",
",",
"request",
",",
"constants",
".",
"ERROR",
",",
"message",
",",
"extra... | Add a message with the ``ERROR`` level. | [
"Add",
"a",
"message",
"with",
"the",
"ERROR",
"level",
"."
] | 04625a4b67c1ad01e5d38faa3093828b360d4a98 | https://github.com/bitcaster-io/bitcaster/blob/04625a4b67c1ad01e5d38faa3093828b360d4a98/src/bitcaster/messages.py#L75-L78 |
16,859 | bread-and-pepper/django-userena | userena/views.py | signup | def signup(request, signup_form=SignupForm,
template_name='userena/signup_form.html', success_url=None,
extra_context=None):
"""
Signup of an account.
Signup requiring a username, email and password. After signup a user gets
an email with an activation link used to activate their ... | python | def signup(request, signup_form=SignupForm,
template_name='userena/signup_form.html', success_url=None,
extra_context=None):
"""
Signup of an account.
Signup requiring a username, email and password. After signup a user gets
an email with an activation link used to activate their ... | [
"def",
"signup",
"(",
"request",
",",
"signup_form",
"=",
"SignupForm",
",",
"template_name",
"=",
"'userena/signup_form.html'",
",",
"success_url",
"=",
"None",
",",
"extra_context",
"=",
"None",
")",
":",
"# If signup is disabled, return 403",
"if",
"userena_setting... | Signup of an account.
Signup requiring a username, email and password. After signup a user gets
an email with an activation link used to activate their account. After
successful signup redirects to ``success_url``.
:param signup_form:
Form that will be used to sign a user. Defaults to userena'... | [
"Signup",
"of",
"an",
"account",
"."
] | 7dfb3d5d148127e32f217a62096d507266a3a83c | https://github.com/bread-and-pepper/django-userena/blob/7dfb3d5d148127e32f217a62096d507266a3a83c/userena/views.py#L73-L146 |
16,860 | openvax/mhcflurry | mhcflurry/hyperparameters.py | HyperparameterDefaults.extend | def extend(self, other):
"""
Return a new HyperparameterDefaults instance containing the
hyperparameters from the current instance combined with
those from other.
It is an error if self and other have any hyperparameters in
common.
"""
overlap = [key for ... | python | def extend(self, other):
"""
Return a new HyperparameterDefaults instance containing the
hyperparameters from the current instance combined with
those from other.
It is an error if self and other have any hyperparameters in
common.
"""
overlap = [key for ... | [
"def",
"extend",
"(",
"self",
",",
"other",
")",
":",
"overlap",
"=",
"[",
"key",
"for",
"key",
"in",
"other",
".",
"defaults",
"if",
"key",
"in",
"self",
".",
"defaults",
"]",
"if",
"overlap",
":",
"raise",
"ValueError",
"(",
"\"Duplicate hyperparameter... | Return a new HyperparameterDefaults instance containing the
hyperparameters from the current instance combined with
those from other.
It is an error if self and other have any hyperparameters in
common. | [
"Return",
"a",
"new",
"HyperparameterDefaults",
"instance",
"containing",
"the",
"hyperparameters",
"from",
"the",
"current",
"instance",
"combined",
"with",
"those",
"from",
"other",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/hyperparameters.py#L22-L37 |
16,861 | openvax/mhcflurry | mhcflurry/hyperparameters.py | HyperparameterDefaults.with_defaults | def with_defaults(self, obj):
"""
Given a dict of hyperparameter settings, return a dict containing
those settings augmented by the defaults for any keys missing from
the dict.
"""
self.check_valid_keys(obj)
obj = dict(obj)
for (key, value) in self.default... | python | def with_defaults(self, obj):
"""
Given a dict of hyperparameter settings, return a dict containing
those settings augmented by the defaults for any keys missing from
the dict.
"""
self.check_valid_keys(obj)
obj = dict(obj)
for (key, value) in self.default... | [
"def",
"with_defaults",
"(",
"self",
",",
"obj",
")",
":",
"self",
".",
"check_valid_keys",
"(",
"obj",
")",
"obj",
"=",
"dict",
"(",
"obj",
")",
"for",
"(",
"key",
",",
"value",
")",
"in",
"self",
".",
"defaults",
".",
"items",
"(",
")",
":",
"i... | Given a dict of hyperparameter settings, return a dict containing
those settings augmented by the defaults for any keys missing from
the dict. | [
"Given",
"a",
"dict",
"of",
"hyperparameter",
"settings",
"return",
"a",
"dict",
"containing",
"those",
"settings",
"augmented",
"by",
"the",
"defaults",
"for",
"any",
"keys",
"missing",
"from",
"the",
"dict",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/hyperparameters.py#L39-L50 |
16,862 | openvax/mhcflurry | mhcflurry/hyperparameters.py | HyperparameterDefaults.subselect | def subselect(self, obj):
"""
Filter a dict of hyperparameter settings to only those keys defined
in this HyperparameterDefaults .
"""
return dict(
(key, value) for (key, value)
in obj.items()
if key in self.defaults) | python | def subselect(self, obj):
"""
Filter a dict of hyperparameter settings to only those keys defined
in this HyperparameterDefaults .
"""
return dict(
(key, value) for (key, value)
in obj.items()
if key in self.defaults) | [
"def",
"subselect",
"(",
"self",
",",
"obj",
")",
":",
"return",
"dict",
"(",
"(",
"key",
",",
"value",
")",
"for",
"(",
"key",
",",
"value",
")",
"in",
"obj",
".",
"items",
"(",
")",
"if",
"key",
"in",
"self",
".",
"defaults",
")"
] | Filter a dict of hyperparameter settings to only those keys defined
in this HyperparameterDefaults . | [
"Filter",
"a",
"dict",
"of",
"hyperparameter",
"settings",
"to",
"only",
"those",
"keys",
"defined",
"in",
"this",
"HyperparameterDefaults",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/hyperparameters.py#L52-L60 |
16,863 | openvax/mhcflurry | mhcflurry/hyperparameters.py | HyperparameterDefaults.check_valid_keys | def check_valid_keys(self, obj):
"""
Given a dict of hyperparameter settings, throw an exception if any
keys are not defined in this HyperparameterDefaults instance.
"""
invalid_keys = [
x for x in obj if x not in self.defaults
]
if invalid_keys:
... | python | def check_valid_keys(self, obj):
"""
Given a dict of hyperparameter settings, throw an exception if any
keys are not defined in this HyperparameterDefaults instance.
"""
invalid_keys = [
x for x in obj if x not in self.defaults
]
if invalid_keys:
... | [
"def",
"check_valid_keys",
"(",
"self",
",",
"obj",
")",
":",
"invalid_keys",
"=",
"[",
"x",
"for",
"x",
"in",
"obj",
"if",
"x",
"not",
"in",
"self",
".",
"defaults",
"]",
"if",
"invalid_keys",
":",
"raise",
"ValueError",
"(",
"\"No such model parameters: ... | Given a dict of hyperparameter settings, throw an exception if any
keys are not defined in this HyperparameterDefaults instance. | [
"Given",
"a",
"dict",
"of",
"hyperparameter",
"settings",
"throw",
"an",
"exception",
"if",
"any",
"keys",
"are",
"not",
"defined",
"in",
"this",
"HyperparameterDefaults",
"instance",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/hyperparameters.py#L62-L74 |
16,864 | openvax/mhcflurry | mhcflurry/hyperparameters.py | HyperparameterDefaults.models_grid | def models_grid(self, **kwargs):
'''
Make a grid of models by taking the cartesian product of all specified
model parameter lists.
Parameters
-----------
The valid kwarg parameters are the entries of this
HyperparameterDefaults instance. Each parameter must be a ... | python | def models_grid(self, **kwargs):
'''
Make a grid of models by taking the cartesian product of all specified
model parameter lists.
Parameters
-----------
The valid kwarg parameters are the entries of this
HyperparameterDefaults instance. Each parameter must be a ... | [
"def",
"models_grid",
"(",
"self",
",",
"*",
"*",
"kwargs",
")",
":",
"# Check parameters",
"self",
".",
"check_valid_keys",
"(",
"kwargs",
")",
"for",
"(",
"key",
",",
"value",
")",
"in",
"kwargs",
".",
"items",
"(",
")",
":",
"if",
"not",
"isinstance... | Make a grid of models by taking the cartesian product of all specified
model parameter lists.
Parameters
-----------
The valid kwarg parameters are the entries of this
HyperparameterDefaults instance. Each parameter must be a list
giving the values to search across.
... | [
"Make",
"a",
"grid",
"of",
"models",
"by",
"taking",
"the",
"cartesian",
"product",
"of",
"all",
"specified",
"model",
"parameter",
"lists",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/hyperparameters.py#L76-L112 |
16,865 | openvax/mhcflurry | mhcflurry/allele_encoding.py | AlleleEncoding.fixed_length_vector_encoded_sequences | def fixed_length_vector_encoded_sequences(self, vector_encoding_name):
"""
Encode alleles.
Parameters
----------
vector_encoding_name : string
How to represent amino acids.
One of "BLOSUM62", "one-hot", etc. Full list of supported vector
encod... | python | def fixed_length_vector_encoded_sequences(self, vector_encoding_name):
"""
Encode alleles.
Parameters
----------
vector_encoding_name : string
How to represent amino acids.
One of "BLOSUM62", "one-hot", etc. Full list of supported vector
encod... | [
"def",
"fixed_length_vector_encoded_sequences",
"(",
"self",
",",
"vector_encoding_name",
")",
":",
"cache_key",
"=",
"(",
"\"fixed_length_vector_encoding\"",
",",
"vector_encoding_name",
")",
"if",
"cache_key",
"not",
"in",
"self",
".",
"encoding_cache",
":",
"index_en... | Encode alleles.
Parameters
----------
vector_encoding_name : string
How to represent amino acids.
One of "BLOSUM62", "one-hot", etc. Full list of supported vector
encodings is given by available_vector_encodings() in amino_acid.
Returns
-----... | [
"Encode",
"alleles",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/allele_encoding.py#L40-L68 |
16,866 | openvax/mhcflurry | mhcflurry/amino_acid.py | index_encoding | def index_encoding(sequences, letter_to_index_dict):
"""
Encode a sequence of same-length strings to a matrix of integers of the
same shape. The map from characters to integers is given by
`letter_to_index_dict`.
Given a sequence of `n` strings all of length `k`, return a `k * n` array where
th... | python | def index_encoding(sequences, letter_to_index_dict):
"""
Encode a sequence of same-length strings to a matrix of integers of the
same shape. The map from characters to integers is given by
`letter_to_index_dict`.
Given a sequence of `n` strings all of length `k`, return a `k * n` array where
th... | [
"def",
"index_encoding",
"(",
"sequences",
",",
"letter_to_index_dict",
")",
":",
"df",
"=",
"pandas",
".",
"DataFrame",
"(",
"iter",
"(",
"s",
")",
"for",
"s",
"in",
"sequences",
")",
"result",
"=",
"df",
".",
"replace",
"(",
"letter_to_index_dict",
")",
... | Encode a sequence of same-length strings to a matrix of integers of the
same shape. The map from characters to integers is given by
`letter_to_index_dict`.
Given a sequence of `n` strings all of length `k`, return a `k * n` array where
the (`i`, `j`)th element is `letter_to_index_dict[sequence[i][j]]`.... | [
"Encode",
"a",
"sequence",
"of",
"same",
"-",
"length",
"strings",
"to",
"a",
"matrix",
"of",
"integers",
"of",
"the",
"same",
"shape",
".",
"The",
"map",
"from",
"characters",
"to",
"integers",
"is",
"given",
"by",
"letter_to_index_dict",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/amino_acid.py#L110-L130 |
16,867 | openvax/mhcflurry | mhcflurry/class1_neural_network.py | Class1NeuralNetwork.apply_hyperparameter_renames | def apply_hyperparameter_renames(cls, hyperparameters):
"""
Handle hyperparameter renames.
Parameters
----------
hyperparameters : dict
Returns
-------
dict : updated hyperparameters
"""
for (from_name, to_name) in cls.hyperparameter_ren... | python | def apply_hyperparameter_renames(cls, hyperparameters):
"""
Handle hyperparameter renames.
Parameters
----------
hyperparameters : dict
Returns
-------
dict : updated hyperparameters
"""
for (from_name, to_name) in cls.hyperparameter_ren... | [
"def",
"apply_hyperparameter_renames",
"(",
"cls",
",",
"hyperparameters",
")",
":",
"for",
"(",
"from_name",
",",
"to_name",
")",
"in",
"cls",
".",
"hyperparameter_renames",
".",
"items",
"(",
")",
":",
"if",
"from_name",
"in",
"hyperparameters",
":",
"value"... | Handle hyperparameter renames.
Parameters
----------
hyperparameters : dict
Returns
-------
dict : updated hyperparameters | [
"Handle",
"hyperparameter",
"renames",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_neural_network.py#L136-L154 |
16,868 | openvax/mhcflurry | mhcflurry/class1_neural_network.py | Class1NeuralNetwork.borrow_cached_network | def borrow_cached_network(klass, network_json, network_weights):
"""
Return a keras Model with the specified architecture and weights.
As an optimization, when possible this will reuse architectures from a
process-wide cache.
The returned object is "borrowed" in the sense that i... | python | def borrow_cached_network(klass, network_json, network_weights):
"""
Return a keras Model with the specified architecture and weights.
As an optimization, when possible this will reuse architectures from a
process-wide cache.
The returned object is "borrowed" in the sense that i... | [
"def",
"borrow_cached_network",
"(",
"klass",
",",
"network_json",
",",
"network_weights",
")",
":",
"assert",
"network_weights",
"is",
"not",
"None",
"key",
"=",
"klass",
".",
"keras_network_cache_key",
"(",
"network_json",
")",
"if",
"key",
"not",
"in",
"klass... | Return a keras Model with the specified architecture and weights.
As an optimization, when possible this will reuse architectures from a
process-wide cache.
The returned object is "borrowed" in the sense that its weights can
change later after subsequent calls to this method from other ... | [
"Return",
"a",
"keras",
"Model",
"with",
"the",
"specified",
"architecture",
"and",
"weights",
".",
"As",
"an",
"optimization",
"when",
"possible",
"this",
"will",
"reuse",
"architectures",
"from",
"a",
"process",
"-",
"wide",
"cache",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_neural_network.py#L183-L224 |
16,869 | openvax/mhcflurry | mhcflurry/class1_neural_network.py | Class1NeuralNetwork.network | def network(self, borrow=False):
"""
Return the keras model associated with this predictor.
Parameters
----------
borrow : bool
Whether to return a cached model if possible. See
borrow_cached_network for details
Returns
-------
ke... | python | def network(self, borrow=False):
"""
Return the keras model associated with this predictor.
Parameters
----------
borrow : bool
Whether to return a cached model if possible. See
borrow_cached_network for details
Returns
-------
ke... | [
"def",
"network",
"(",
"self",
",",
"borrow",
"=",
"False",
")",
":",
"if",
"self",
".",
"_network",
"is",
"None",
"and",
"self",
".",
"network_json",
"is",
"not",
"None",
":",
"self",
".",
"load_weights",
"(",
")",
"if",
"borrow",
":",
"return",
"se... | Return the keras model associated with this predictor.
Parameters
----------
borrow : bool
Whether to return a cached model if possible. See
borrow_cached_network for details
Returns
-------
keras.models.Model | [
"Return",
"the",
"keras",
"model",
"associated",
"with",
"this",
"predictor",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_neural_network.py#L226-L253 |
16,870 | openvax/mhcflurry | mhcflurry/class1_neural_network.py | Class1NeuralNetwork.load_weights | def load_weights(self):
"""
Load weights by evaluating self.network_weights_loader, if needed.
After calling this, self.network_weights_loader will be None and
self.network_weights will be the weights list, if available.
"""
if self.network_weights_loader:
se... | python | def load_weights(self):
"""
Load weights by evaluating self.network_weights_loader, if needed.
After calling this, self.network_weights_loader will be None and
self.network_weights will be the weights list, if available.
"""
if self.network_weights_loader:
se... | [
"def",
"load_weights",
"(",
"self",
")",
":",
"if",
"self",
".",
"network_weights_loader",
":",
"self",
".",
"network_weights",
"=",
"self",
".",
"network_weights_loader",
"(",
")",
"self",
".",
"network_weights_loader",
"=",
"None"
] | Load weights by evaluating self.network_weights_loader, if needed.
After calling this, self.network_weights_loader will be None and
self.network_weights will be the weights list, if available. | [
"Load",
"weights",
"by",
"evaluating",
"self",
".",
"network_weights_loader",
"if",
"needed",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_neural_network.py#L315-L324 |
16,871 | openvax/mhcflurry | mhcflurry/class1_neural_network.py | Class1NeuralNetwork.predict | def predict(self, peptides, allele_encoding=None, batch_size=4096):
"""
Predict affinities.
If peptides are specified as EncodableSequences, then the predictions
will be cached for this predictor as long as the EncodableSequences object
remains in memory. The cache is keyed in t... | python | def predict(self, peptides, allele_encoding=None, batch_size=4096):
"""
Predict affinities.
If peptides are specified as EncodableSequences, then the predictions
will be cached for this predictor as long as the EncodableSequences object
remains in memory. The cache is keyed in t... | [
"def",
"predict",
"(",
"self",
",",
"peptides",
",",
"allele_encoding",
"=",
"None",
",",
"batch_size",
"=",
"4096",
")",
":",
"assert",
"self",
".",
"prediction_cache",
"is",
"not",
"None",
"use_cache",
"=",
"(",
"allele_encoding",
"is",
"None",
"and",
"i... | Predict affinities.
If peptides are specified as EncodableSequences, then the predictions
will be cached for this predictor as long as the EncodableSequences object
remains in memory. The cache is keyed in the object identity of the
EncodableSequences, not the sequences themselves.
... | [
"Predict",
"affinities",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_neural_network.py#L739-L782 |
16,872 | openvax/mhcflurry | mhcflurry/scoring.py | make_scores | def make_scores(
ic50_y,
ic50_y_pred,
sample_weight=None,
threshold_nm=500,
max_ic50=50000):
"""
Calculate AUC, F1, and Kendall Tau scores.
Parameters
-----------
ic50_y : float list
true IC50s (i.e. affinities)
ic50_y_pred : float list
p... | python | def make_scores(
ic50_y,
ic50_y_pred,
sample_weight=None,
threshold_nm=500,
max_ic50=50000):
"""
Calculate AUC, F1, and Kendall Tau scores.
Parameters
-----------
ic50_y : float list
true IC50s (i.e. affinities)
ic50_y_pred : float list
p... | [
"def",
"make_scores",
"(",
"ic50_y",
",",
"ic50_y_pred",
",",
"sample_weight",
"=",
"None",
",",
"threshold_nm",
"=",
"500",
",",
"max_ic50",
"=",
"50000",
")",
":",
"y_pred",
"=",
"from_ic50",
"(",
"ic50_y_pred",
",",
"max_ic50",
")",
"try",
":",
"auc",
... | Calculate AUC, F1, and Kendall Tau scores.
Parameters
-----------
ic50_y : float list
true IC50s (i.e. affinities)
ic50_y_pred : float list
predicted IC50s
sample_weight : float list [optional]
threshold_nm : float [optional]
max_ic50 : float [optional]
Returns
... | [
"Calculate",
"AUC",
"F1",
"and",
"Kendall",
"Tau",
"scores",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/scoring.py#L14-L68 |
16,873 | openvax/mhcflurry | mhcflurry/encodable_sequences.py | EncodableSequences.variable_length_to_fixed_length_vector_encoding | def variable_length_to_fixed_length_vector_encoding(
self, vector_encoding_name, left_edge=4, right_edge=4, max_length=15):
"""
Encode variable-length sequences using a fixed-length encoding designed
for preserving the anchor positions of class I peptides.
The sequences must... | python | def variable_length_to_fixed_length_vector_encoding(
self, vector_encoding_name, left_edge=4, right_edge=4, max_length=15):
"""
Encode variable-length sequences using a fixed-length encoding designed
for preserving the anchor positions of class I peptides.
The sequences must... | [
"def",
"variable_length_to_fixed_length_vector_encoding",
"(",
"self",
",",
"vector_encoding_name",
",",
"left_edge",
"=",
"4",
",",
"right_edge",
"=",
"4",
",",
"max_length",
"=",
"15",
")",
":",
"cache_key",
"=",
"(",
"\"fixed_length_vector_encoding\"",
",",
"vect... | Encode variable-length sequences using a fixed-length encoding designed
for preserving the anchor positions of class I peptides.
The sequences must be of length at least left_edge + right_edge, and at
most max_length.
Parameters
----------
vector_encoding_name : string
... | [
"Encode",
"variable",
"-",
"length",
"sequences",
"using",
"a",
"fixed",
"-",
"length",
"encoding",
"designed",
"for",
"preserving",
"the",
"anchor",
"positions",
"of",
"class",
"I",
"peptides",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/encodable_sequences.py#L89-L131 |
16,874 | openvax/mhcflurry | mhcflurry/encodable_sequences.py | EncodableSequences.sequences_to_fixed_length_index_encoded_array | def sequences_to_fixed_length_index_encoded_array(
klass, sequences, left_edge=4, right_edge=4, max_length=15):
"""
Transform a sequence of strings, where each string is of length at least
left_edge + right_edge and at most max_length into strings of length
max_length using a... | python | def sequences_to_fixed_length_index_encoded_array(
klass, sequences, left_edge=4, right_edge=4, max_length=15):
"""
Transform a sequence of strings, where each string is of length at least
left_edge + right_edge and at most max_length into strings of length
max_length using a... | [
"def",
"sequences_to_fixed_length_index_encoded_array",
"(",
"klass",
",",
"sequences",
",",
"left_edge",
"=",
"4",
",",
"right_edge",
"=",
"4",
",",
"max_length",
"=",
"15",
")",
":",
"# Result array is int32, filled with X (null amino acid) value.",
"result",
"=",
"nu... | Transform a sequence of strings, where each string is of length at least
left_edge + right_edge and at most max_length into strings of length
max_length using a scheme designed to preserve the anchor positions of
class I peptides.
The first left_edge characters in the input always map t... | [
"Transform",
"a",
"sequence",
"of",
"strings",
"where",
"each",
"string",
"is",
"of",
"length",
"at",
"least",
"left_edge",
"+",
"right_edge",
"and",
"at",
"most",
"max_length",
"into",
"strings",
"of",
"length",
"max_length",
"using",
"a",
"scheme",
"designed... | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/encodable_sequences.py#L134-L223 |
16,875 | openvax/mhcflurry | mhcflurry/ensemble_centrality.py | robust_mean | def robust_mean(log_values):
"""
Mean of values falling within the 25-75 percentiles.
Parameters
----------
log_values : 2-d numpy.array
Center is computed along the second axis (i.e. per row).
Returns
-------
center : numpy.array of length log_values.shape[1]
"""
if l... | python | def robust_mean(log_values):
"""
Mean of values falling within the 25-75 percentiles.
Parameters
----------
log_values : 2-d numpy.array
Center is computed along the second axis (i.e. per row).
Returns
-------
center : numpy.array of length log_values.shape[1]
"""
if l... | [
"def",
"robust_mean",
"(",
"log_values",
")",
":",
"if",
"log_values",
".",
"shape",
"[",
"1",
"]",
"<=",
"3",
":",
"# Too few values to use robust mean.",
"return",
"numpy",
".",
"nanmean",
"(",
"log_values",
",",
"axis",
"=",
"1",
")",
"without_nans",
"=",... | Mean of values falling within the 25-75 percentiles.
Parameters
----------
log_values : 2-d numpy.array
Center is computed along the second axis (i.e. per row).
Returns
-------
center : numpy.array of length log_values.shape[1] | [
"Mean",
"of",
"values",
"falling",
"within",
"the",
"25",
"-",
"75",
"percentiles",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/ensemble_centrality.py#L11-L33 |
16,876 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.neural_networks | def neural_networks(self):
"""
List of the neural networks in the ensemble.
Returns
-------
list of `Class1NeuralNetwork`
"""
result = []
for models in self.allele_to_allele_specific_models.values():
result.extend(models)
result.extend... | python | def neural_networks(self):
"""
List of the neural networks in the ensemble.
Returns
-------
list of `Class1NeuralNetwork`
"""
result = []
for models in self.allele_to_allele_specific_models.values():
result.extend(models)
result.extend... | [
"def",
"neural_networks",
"(",
"self",
")",
":",
"result",
"=",
"[",
"]",
"for",
"models",
"in",
"self",
".",
"allele_to_allele_specific_models",
".",
"values",
"(",
")",
":",
"result",
".",
"extend",
"(",
"models",
")",
"result",
".",
"extend",
"(",
"se... | List of the neural networks in the ensemble.
Returns
-------
list of `Class1NeuralNetwork` | [
"List",
"of",
"the",
"neural",
"networks",
"in",
"the",
"ensemble",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L140-L152 |
16,877 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.merge | def merge(cls, predictors):
"""
Merge the ensembles of two or more `Class1AffinityPredictor` instances.
Note: the resulting merged predictor will NOT have calibrated percentile
ranks. Call `calibrate_percentile_ranks` on it if these are needed.
Parameters
----------
... | python | def merge(cls, predictors):
"""
Merge the ensembles of two or more `Class1AffinityPredictor` instances.
Note: the resulting merged predictor will NOT have calibrated percentile
ranks. Call `calibrate_percentile_ranks` on it if these are needed.
Parameters
----------
... | [
"def",
"merge",
"(",
"cls",
",",
"predictors",
")",
":",
"assert",
"len",
"(",
"predictors",
")",
">",
"0",
"if",
"len",
"(",
"predictors",
")",
"==",
"1",
":",
"return",
"predictors",
"[",
"0",
"]",
"allele_to_allele_specific_models",
"=",
"collections",
... | Merge the ensembles of two or more `Class1AffinityPredictor` instances.
Note: the resulting merged predictor will NOT have calibrated percentile
ranks. Call `calibrate_percentile_ranks` on it if these are needed.
Parameters
----------
predictors : sequence of `Class1AffinityPre... | [
"Merge",
"the",
"ensembles",
"of",
"two",
"or",
"more",
"Class1AffinityPredictor",
"instances",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L155-L190 |
16,878 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.merge_in_place | def merge_in_place(self, others):
"""
Add the models present other predictors into the current predictor.
Parameters
----------
others : list of Class1AffinityPredictor
Other predictors to merge into the current predictor.
Returns
-------
lis... | python | def merge_in_place(self, others):
"""
Add the models present other predictors into the current predictor.
Parameters
----------
others : list of Class1AffinityPredictor
Other predictors to merge into the current predictor.
Returns
-------
lis... | [
"def",
"merge_in_place",
"(",
"self",
",",
"others",
")",
":",
"new_model_names",
"=",
"[",
"]",
"for",
"predictor",
"in",
"others",
":",
"for",
"model",
"in",
"predictor",
".",
"class1_pan_allele_models",
":",
"model_name",
"=",
"self",
".",
"model_name",
"... | Add the models present other predictors into the current predictor.
Parameters
----------
others : list of Class1AffinityPredictor
Other predictors to merge into the current predictor.
Returns
-------
list of string : names of newly added models | [
"Add",
"the",
"models",
"present",
"other",
"predictors",
"into",
"the",
"current",
"predictor",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L192-L241 |
16,879 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.percentile_ranks | def percentile_ranks(self, affinities, allele=None, alleles=None, throw=True):
"""
Return percentile ranks for the given ic50 affinities and alleles.
The 'allele' and 'alleles' argument are as in the `predict` method.
Specify one of these.
Parameters
----------
... | python | def percentile_ranks(self, affinities, allele=None, alleles=None, throw=True):
"""
Return percentile ranks for the given ic50 affinities and alleles.
The 'allele' and 'alleles' argument are as in the `predict` method.
Specify one of these.
Parameters
----------
... | [
"def",
"percentile_ranks",
"(",
"self",
",",
"affinities",
",",
"allele",
"=",
"None",
",",
"alleles",
"=",
"None",
",",
"throw",
"=",
"True",
")",
":",
"if",
"allele",
"is",
"not",
"None",
":",
"try",
":",
"transform",
"=",
"self",
".",
"allele_to_per... | Return percentile ranks for the given ic50 affinities and alleles.
The 'allele' and 'alleles' argument are as in the `predict` method.
Specify one of these.
Parameters
----------
affinities : sequence of float
nM affinities
allele : string
alleles : ... | [
"Return",
"percentile",
"ranks",
"for",
"the",
"given",
"ic50",
"affinities",
"and",
"alleles",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L722-L766 |
16,880 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.calibrate_percentile_ranks | def calibrate_percentile_ranks(
self,
peptides=None,
num_peptides_per_length=int(1e5),
alleles=None,
bins=None):
"""
Compute the cumulative distribution of ic50 values for a set of alleles
over a large universe of random peptides, to en... | python | def calibrate_percentile_ranks(
self,
peptides=None,
num_peptides_per_length=int(1e5),
alleles=None,
bins=None):
"""
Compute the cumulative distribution of ic50 values for a set of alleles
over a large universe of random peptides, to en... | [
"def",
"calibrate_percentile_ranks",
"(",
"self",
",",
"peptides",
"=",
"None",
",",
"num_peptides_per_length",
"=",
"int",
"(",
"1e5",
")",
",",
"alleles",
"=",
"None",
",",
"bins",
"=",
"None",
")",
":",
"if",
"bins",
"is",
"None",
":",
"bins",
"=",
... | Compute the cumulative distribution of ic50 values for a set of alleles
over a large universe of random peptides, to enable computing quantiles in
this distribution later.
Parameters
----------
peptides : sequence of string or EncodableSequences, optional
Peptides to... | [
"Compute",
"the",
"cumulative",
"distribution",
"of",
"ic50",
"values",
"for",
"a",
"set",
"of",
"alleles",
"over",
"a",
"large",
"universe",
"of",
"random",
"peptides",
"to",
"enable",
"computing",
"quantiles",
"in",
"this",
"distribution",
"later",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L1074-L1128 |
16,881 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.filter_networks | def filter_networks(self, predicate):
"""
Return a new Class1AffinityPredictor containing a subset of this
predictor's neural networks.
Parameters
----------
predicate : Class1NeuralNetwork -> boolean
Function specifying which neural networks to include
... | python | def filter_networks(self, predicate):
"""
Return a new Class1AffinityPredictor containing a subset of this
predictor's neural networks.
Parameters
----------
predicate : Class1NeuralNetwork -> boolean
Function specifying which neural networks to include
... | [
"def",
"filter_networks",
"(",
"self",
",",
"predicate",
")",
":",
"allele_to_allele_specific_models",
"=",
"{",
"}",
"for",
"(",
"allele",
",",
"models",
")",
"in",
"self",
".",
"allele_to_allele_specific_models",
".",
"items",
"(",
")",
":",
"allele_to_allele_... | Return a new Class1AffinityPredictor containing a subset of this
predictor's neural networks.
Parameters
----------
predicate : Class1NeuralNetwork -> boolean
Function specifying which neural networks to include
Returns
-------
Class1AffinityPredicto... | [
"Return",
"a",
"new",
"Class1AffinityPredictor",
"containing",
"a",
"subset",
"of",
"this",
"predictor",
"s",
"neural",
"networks",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L1130-L1157 |
16,882 | openvax/mhcflurry | mhcflurry/class1_affinity_predictor.py | Class1AffinityPredictor.model_select | def model_select(
self,
score_function,
alleles=None,
min_models=1,
max_models=10000):
"""
Perform model selection using a user-specified scoring function.
Model selection is done using a "step up" variable selection procedure,
... | python | def model_select(
self,
score_function,
alleles=None,
min_models=1,
max_models=10000):
"""
Perform model selection using a user-specified scoring function.
Model selection is done using a "step up" variable selection procedure,
... | [
"def",
"model_select",
"(",
"self",
",",
"score_function",
",",
"alleles",
"=",
"None",
",",
"min_models",
"=",
"1",
",",
"max_models",
"=",
"10000",
")",
":",
"if",
"alleles",
"is",
"None",
":",
"alleles",
"=",
"self",
".",
"supported_alleles",
"dfs",
"... | Perform model selection using a user-specified scoring function.
Model selection is done using a "step up" variable selection procedure,
in which models are repeatedly added to an ensemble until the score
stops improving.
Parameters
----------
score_function : Class1Aff... | [
"Perform",
"model",
"selection",
"using",
"a",
"user",
"-",
"specified",
"scoring",
"function",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/class1_affinity_predictor.py#L1159-L1245 |
16,883 | openvax/mhcflurry | mhcflurry/percent_rank_transform.py | PercentRankTransform.to_series | def to_series(self):
"""
Serialize the fit to a pandas.Series.
The index on the series gives the bin edges and the valeus give the CDF.
Returns
-------
pandas.Series
"""
return pandas.Series(
self.cdf, index=[numpy.nan] + list(self.bin_edges... | python | def to_series(self):
"""
Serialize the fit to a pandas.Series.
The index on the series gives the bin edges and the valeus give the CDF.
Returns
-------
pandas.Series
"""
return pandas.Series(
self.cdf, index=[numpy.nan] + list(self.bin_edges... | [
"def",
"to_series",
"(",
"self",
")",
":",
"return",
"pandas",
".",
"Series",
"(",
"self",
".",
"cdf",
",",
"index",
"=",
"[",
"numpy",
".",
"nan",
"]",
"+",
"list",
"(",
"self",
".",
"bin_edges",
")",
"+",
"[",
"numpy",
".",
"nan",
"]",
")"
] | Serialize the fit to a pandas.Series.
The index on the series gives the bin edges and the valeus give the CDF.
Returns
-------
pandas.Series | [
"Serialize",
"the",
"fit",
"to",
"a",
"pandas",
".",
"Series",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/percent_rank_transform.py#L46-L58 |
16,884 | openvax/mhcflurry | mhcflurry/downloads.py | get_default_class1_models_dir | def get_default_class1_models_dir(test_exists=True):
"""
Return the absolute path to the default class1 models dir.
If environment variable MHCFLURRY_DEFAULT_CLASS1_MODELS is set to an
absolute path, return that path. If it's set to a relative path (i.e. does
not start with /) then return that path... | python | def get_default_class1_models_dir(test_exists=True):
"""
Return the absolute path to the default class1 models dir.
If environment variable MHCFLURRY_DEFAULT_CLASS1_MODELS is set to an
absolute path, return that path. If it's set to a relative path (i.e. does
not start with /) then return that path... | [
"def",
"get_default_class1_models_dir",
"(",
"test_exists",
"=",
"True",
")",
":",
"if",
"_MHCFLURRY_DEFAULT_CLASS1_MODELS_DIR",
":",
"result",
"=",
"join",
"(",
"get_downloads_dir",
"(",
")",
",",
"_MHCFLURRY_DEFAULT_CLASS1_MODELS_DIR",
")",
"if",
"test_exists",
"and",... | Return the absolute path to the default class1 models dir.
If environment variable MHCFLURRY_DEFAULT_CLASS1_MODELS is set to an
absolute path, return that path. If it's set to a relative path (i.e. does
not start with /) then return that path taken to be relative to the mhcflurry
downloads dir.
If... | [
"Return",
"the",
"absolute",
"path",
"to",
"the",
"default",
"class1",
"models",
"dir",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/downloads.py#L57-L85 |
16,885 | openvax/mhcflurry | mhcflurry/downloads.py | get_current_release_downloads | def get_current_release_downloads():
"""
Return a dict of all available downloads in the current release.
The dict keys are the names of the downloads. The values are a dict
with two entries:
downloaded : bool
Whether the download is currently available locally
metadata : dict
... | python | def get_current_release_downloads():
"""
Return a dict of all available downloads in the current release.
The dict keys are the names of the downloads. The values are a dict
with two entries:
downloaded : bool
Whether the download is currently available locally
metadata : dict
... | [
"def",
"get_current_release_downloads",
"(",
")",
":",
"downloads",
"=",
"(",
"get_downloads_metadata",
"(",
")",
"[",
"'releases'",
"]",
"[",
"get_current_release",
"(",
")",
"]",
"[",
"'downloads'",
"]",
")",
"return",
"OrderedDict",
"(",
"(",
"download",
"[... | Return a dict of all available downloads in the current release.
The dict keys are the names of the downloads. The values are a dict
with two entries:
downloaded : bool
Whether the download is currently available locally
metadata : dict
Info about the download from downloads.yml such ... | [
"Return",
"a",
"dict",
"of",
"all",
"available",
"downloads",
"in",
"the",
"current",
"release",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/downloads.py#L88-L111 |
16,886 | openvax/mhcflurry | mhcflurry/downloads.py | get_path | def get_path(download_name, filename='', test_exists=True):
"""
Get the local path to a file in a MHCflurry download
Parameters
-----------
download_name : string
filename : string
Relative path within the download to the file of interest
test_exists : boolean
If True (def... | python | def get_path(download_name, filename='', test_exists=True):
"""
Get the local path to a file in a MHCflurry download
Parameters
-----------
download_name : string
filename : string
Relative path within the download to the file of interest
test_exists : boolean
If True (def... | [
"def",
"get_path",
"(",
"download_name",
",",
"filename",
"=",
"''",
",",
"test_exists",
"=",
"True",
")",
":",
"assert",
"'/'",
"not",
"in",
"download_name",
",",
"\"Invalid download: %s\"",
"%",
"download_name",
"path",
"=",
"join",
"(",
"get_downloads_dir",
... | Get the local path to a file in a MHCflurry download
Parameters
-----------
download_name : string
filename : string
Relative path within the download to the file of interest
test_exists : boolean
If True (default) throw an error telling the user how to download the
data i... | [
"Get",
"the",
"local",
"path",
"to",
"a",
"file",
"in",
"a",
"MHCflurry",
"download"
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/downloads.py#L114-L141 |
16,887 | openvax/mhcflurry | mhcflurry/downloads.py | configure | def configure():
"""
Setup various global variables based on environment variables.
"""
global _DOWNLOADS_DIR
global _CURRENT_RELEASE
_CURRENT_RELEASE = None
_DOWNLOADS_DIR = environ.get("MHCFLURRY_DOWNLOADS_DIR")
if not _DOWNLOADS_DIR:
metadata = get_downloads_metadata()
... | python | def configure():
"""
Setup various global variables based on environment variables.
"""
global _DOWNLOADS_DIR
global _CURRENT_RELEASE
_CURRENT_RELEASE = None
_DOWNLOADS_DIR = environ.get("MHCFLURRY_DOWNLOADS_DIR")
if not _DOWNLOADS_DIR:
metadata = get_downloads_metadata()
... | [
"def",
"configure",
"(",
")",
":",
"global",
"_DOWNLOADS_DIR",
"global",
"_CURRENT_RELEASE",
"_CURRENT_RELEASE",
"=",
"None",
"_DOWNLOADS_DIR",
"=",
"environ",
".",
"get",
"(",
"\"MHCFLURRY_DOWNLOADS_DIR\"",
")",
"if",
"not",
"_DOWNLOADS_DIR",
":",
"metadata",
"=",
... | Setup various global variables based on environment variables. | [
"Setup",
"various",
"global",
"variables",
"based",
"on",
"environment",
"variables",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/downloads.py#L144-L179 |
16,888 | openvax/mhcflurry | mhcflurry/parallelism.py | make_worker_pool | def make_worker_pool(
processes=None,
initializer=None,
initializer_kwargs_per_process=None,
max_tasks_per_worker=None):
"""
Convenience wrapper to create a multiprocessing.Pool.
This function adds support for per-worker initializer arguments, which are
not natively supp... | python | def make_worker_pool(
processes=None,
initializer=None,
initializer_kwargs_per_process=None,
max_tasks_per_worker=None):
"""
Convenience wrapper to create a multiprocessing.Pool.
This function adds support for per-worker initializer arguments, which are
not natively supp... | [
"def",
"make_worker_pool",
"(",
"processes",
"=",
"None",
",",
"initializer",
"=",
"None",
",",
"initializer_kwargs_per_process",
"=",
"None",
",",
"max_tasks_per_worker",
"=",
"None",
")",
":",
"if",
"not",
"processes",
":",
"processes",
"=",
"cpu_count",
"(",
... | Convenience wrapper to create a multiprocessing.Pool.
This function adds support for per-worker initializer arguments, which are
not natively supported by the multiprocessing module. The motivation for
this feature is to support allocating each worker to a (different) GPU.
IMPLEMENTATION NOTE:
... | [
"Convenience",
"wrapper",
"to",
"create",
"a",
"multiprocessing",
".",
"Pool",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/parallelism.py#L115-L188 |
16,889 | openvax/mhcflurry | mhcflurry/calibrate_percentile_ranks_command.py | calibrate_percentile_ranks | def calibrate_percentile_ranks(allele, predictor, peptides=None):
"""
Private helper function.
"""
global GLOBAL_DATA
if peptides is None:
peptides = GLOBAL_DATA["calibration_peptides"]
predictor.calibrate_percentile_ranks(
peptides=peptides,
alleles=[allele])
return ... | python | def calibrate_percentile_ranks(allele, predictor, peptides=None):
"""
Private helper function.
"""
global GLOBAL_DATA
if peptides is None:
peptides = GLOBAL_DATA["calibration_peptides"]
predictor.calibrate_percentile_ranks(
peptides=peptides,
alleles=[allele])
return ... | [
"def",
"calibrate_percentile_ranks",
"(",
"allele",
",",
"predictor",
",",
"peptides",
"=",
"None",
")",
":",
"global",
"GLOBAL_DATA",
"if",
"peptides",
"is",
"None",
":",
"peptides",
"=",
"GLOBAL_DATA",
"[",
"\"calibration_peptides\"",
"]",
"predictor",
".",
"c... | Private helper function. | [
"Private",
"helper",
"function",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/calibrate_percentile_ranks_command.py#L140-L152 |
16,890 | openvax/mhcflurry | mhcflurry/common.py | set_keras_backend | def set_keras_backend(backend=None, gpu_device_nums=None, num_threads=None):
"""
Configure Keras backend to use GPU or CPU. Only tensorflow is supported.
Parameters
----------
backend : string, optional
one of 'tensorflow-default', 'tensorflow-cpu', 'tensorflow-gpu'
gpu_device_nums : l... | python | def set_keras_backend(backend=None, gpu_device_nums=None, num_threads=None):
"""
Configure Keras backend to use GPU or CPU. Only tensorflow is supported.
Parameters
----------
backend : string, optional
one of 'tensorflow-default', 'tensorflow-cpu', 'tensorflow-gpu'
gpu_device_nums : l... | [
"def",
"set_keras_backend",
"(",
"backend",
"=",
"None",
",",
"gpu_device_nums",
"=",
"None",
",",
"num_threads",
"=",
"None",
")",
":",
"os",
".",
"environ",
"[",
"\"KERAS_BACKEND\"",
"]",
"=",
"\"tensorflow\"",
"original_backend",
"=",
"backend",
"if",
"not"... | Configure Keras backend to use GPU or CPU. Only tensorflow is supported.
Parameters
----------
backend : string, optional
one of 'tensorflow-default', 'tensorflow-cpu', 'tensorflow-gpu'
gpu_device_nums : list of int, optional
GPU devices to potentially use
num_threads : int, optio... | [
"Configure",
"Keras",
"backend",
"to",
"use",
"GPU",
"or",
"CPU",
".",
"Only",
"tensorflow",
"is",
"supported",
"."
] | deb7c1629111254b484a2711619eb2347db36524 | https://github.com/openvax/mhcflurry/blob/deb7c1629111254b484a2711619eb2347db36524/mhcflurry/common.py#L14-L68 |
16,891 | JonathanRaiman/pytreebank | pytreebank/labeled_trees.py | LabeledTree.uproot | def uproot(tree):
"""
Take a subranch of a tree and deep-copy the children
of this subbranch into a new LabeledTree
"""
uprooted = tree.copy()
uprooted.parent = None
for child in tree.all_children():
uprooted.add_general_child(child)
return upr... | python | def uproot(tree):
"""
Take a subranch of a tree and deep-copy the children
of this subbranch into a new LabeledTree
"""
uprooted = tree.copy()
uprooted.parent = None
for child in tree.all_children():
uprooted.add_general_child(child)
return upr... | [
"def",
"uproot",
"(",
"tree",
")",
":",
"uprooted",
"=",
"tree",
".",
"copy",
"(",
")",
"uprooted",
".",
"parent",
"=",
"None",
"for",
"child",
"in",
"tree",
".",
"all_children",
"(",
")",
":",
"uprooted",
".",
"add_general_child",
"(",
"child",
")",
... | Take a subranch of a tree and deep-copy the children
of this subbranch into a new LabeledTree | [
"Take",
"a",
"subranch",
"of",
"a",
"tree",
"and",
"deep",
"-",
"copy",
"the",
"children",
"of",
"this",
"subbranch",
"into",
"a",
"new",
"LabeledTree"
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/labeled_trees.py#L35-L44 |
16,892 | JonathanRaiman/pytreebank | pytreebank/labeled_trees.py | LabeledTree.copy | def copy(self):
"""
Deep Copy of a LabeledTree
"""
return LabeledTree(
udepth = self.udepth,
depth = self.depth,
text = self.text,
label = self.label,
children = self.children.copy() if self.children != None else [],
... | python | def copy(self):
"""
Deep Copy of a LabeledTree
"""
return LabeledTree(
udepth = self.udepth,
depth = self.depth,
text = self.text,
label = self.label,
children = self.children.copy() if self.children != None else [],
... | [
"def",
"copy",
"(",
"self",
")",
":",
"return",
"LabeledTree",
"(",
"udepth",
"=",
"self",
".",
"udepth",
",",
"depth",
"=",
"self",
".",
"depth",
",",
"text",
"=",
"self",
".",
"text",
",",
"label",
"=",
"self",
".",
"label",
",",
"children",
"=",... | Deep Copy of a LabeledTree | [
"Deep",
"Copy",
"of",
"a",
"LabeledTree"
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/labeled_trees.py#L60-L70 |
16,893 | JonathanRaiman/pytreebank | pytreebank/labeled_trees.py | LabeledTree.add_child | def add_child(self, child):
"""
Adds a branch to the current tree.
"""
self.children.append(child)
child.parent = self
self.udepth = max([child.udepth for child in self.children]) + 1 | python | def add_child(self, child):
"""
Adds a branch to the current tree.
"""
self.children.append(child)
child.parent = self
self.udepth = max([child.udepth for child in self.children]) + 1 | [
"def",
"add_child",
"(",
"self",
",",
"child",
")",
":",
"self",
".",
"children",
".",
"append",
"(",
"child",
")",
"child",
".",
"parent",
"=",
"self",
"self",
".",
"udepth",
"=",
"max",
"(",
"[",
"child",
".",
"udepth",
"for",
"child",
"in",
"sel... | Adds a branch to the current tree. | [
"Adds",
"a",
"branch",
"to",
"the",
"current",
"tree",
"."
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/labeled_trees.py#L72-L78 |
16,894 | JonathanRaiman/pytreebank | pytreebank/labeled_trees.py | LabeledTree.lowercase | def lowercase(self):
"""
Lowercase all strings in this tree.
Works recursively and in-place.
"""
if len(self.children) > 0:
for child in self.children:
child.lowercase()
else:
self.text = self.text.lower() | python | def lowercase(self):
"""
Lowercase all strings in this tree.
Works recursively and in-place.
"""
if len(self.children) > 0:
for child in self.children:
child.lowercase()
else:
self.text = self.text.lower() | [
"def",
"lowercase",
"(",
"self",
")",
":",
"if",
"len",
"(",
"self",
".",
"children",
")",
">",
"0",
":",
"for",
"child",
"in",
"self",
".",
"children",
":",
"child",
".",
"lowercase",
"(",
")",
"else",
":",
"self",
".",
"text",
"=",
"self",
".",... | Lowercase all strings in this tree.
Works recursively and in-place. | [
"Lowercase",
"all",
"strings",
"in",
"this",
"tree",
".",
"Works",
"recursively",
"and",
"in",
"-",
"place",
"."
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/labeled_trees.py#L92-L101 |
16,895 | JonathanRaiman/pytreebank | pytreebank/labeled_trees.py | LabeledTree.inject_visualization_javascript | def inject_visualization_javascript(tree_width=1200, tree_height=400, tree_node_radius=10):
"""
In an Ipython notebook, show SST trees using the same Javascript
code as used by Jason Chuang's visualisations.
"""
from .javascript import insert_sentiment_markup
insert_senti... | python | def inject_visualization_javascript(tree_width=1200, tree_height=400, tree_node_radius=10):
"""
In an Ipython notebook, show SST trees using the same Javascript
code as used by Jason Chuang's visualisations.
"""
from .javascript import insert_sentiment_markup
insert_senti... | [
"def",
"inject_visualization_javascript",
"(",
"tree_width",
"=",
"1200",
",",
"tree_height",
"=",
"400",
",",
"tree_node_radius",
"=",
"10",
")",
":",
"from",
".",
"javascript",
"import",
"insert_sentiment_markup",
"insert_sentiment_markup",
"(",
"tree_width",
"=",
... | In an Ipython notebook, show SST trees using the same Javascript
code as used by Jason Chuang's visualisations. | [
"In",
"an",
"Ipython",
"notebook",
"show",
"SST",
"trees",
"using",
"the",
"same",
"Javascript",
"code",
"as",
"used",
"by",
"Jason",
"Chuang",
"s",
"visualisations",
"."
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/labeled_trees.py#L195-L201 |
16,896 | JonathanRaiman/pytreebank | pytreebank/parse.py | create_tree_from_string | def create_tree_from_string(line):
"""
Parse and convert a string representation
of an example into a LabeledTree datastructure.
Arguments:
----------
line : str, string version of the tree.
Returns:
--------
LabeledTree : parsed tree.
"""
depth = 0
curr... | python | def create_tree_from_string(line):
"""
Parse and convert a string representation
of an example into a LabeledTree datastructure.
Arguments:
----------
line : str, string version of the tree.
Returns:
--------
LabeledTree : parsed tree.
"""
depth = 0
curr... | [
"def",
"create_tree_from_string",
"(",
"line",
")",
":",
"depth",
"=",
"0",
"current_word",
"=",
"\"\"",
"root",
"=",
"None",
"current_node",
"=",
"root",
"for",
"char",
"in",
"line",
":",
"if",
"char",
"==",
"'('",
":",
"if",
"current_node",
"is",
"not"... | Parse and convert a string representation
of an example into a LabeledTree datastructure.
Arguments:
----------
line : str, string version of the tree.
Returns:
--------
LabeledTree : parsed tree. | [
"Parse",
"and",
"convert",
"a",
"string",
"representation",
"of",
"an",
"example",
"into",
"a",
"LabeledTree",
"datastructure",
"."
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/parse.py#L49-L101 |
16,897 | JonathanRaiman/pytreebank | pytreebank/parse.py | import_tree_corpus | def import_tree_corpus(path):
"""
Import a text file of treebank trees.
Arguments:
----------
path : str, filename for tree corpus.
Returns:
--------
list<LabeledTree> : loaded examples.
"""
tree_list = LabeledTreeCorpus()
with codecs.open(path, "r", "UTF-8") as f:
... | python | def import_tree_corpus(path):
"""
Import a text file of treebank trees.
Arguments:
----------
path : str, filename for tree corpus.
Returns:
--------
list<LabeledTree> : loaded examples.
"""
tree_list = LabeledTreeCorpus()
with codecs.open(path, "r", "UTF-8") as f:
... | [
"def",
"import_tree_corpus",
"(",
"path",
")",
":",
"tree_list",
"=",
"LabeledTreeCorpus",
"(",
")",
"with",
"codecs",
".",
"open",
"(",
"path",
",",
"\"r\"",
",",
"\"UTF-8\"",
")",
"as",
"f",
":",
"for",
"line",
"in",
"f",
":",
"tree_list",
".",
"appe... | Import a text file of treebank trees.
Arguments:
----------
path : str, filename for tree corpus.
Returns:
--------
list<LabeledTree> : loaded examples. | [
"Import",
"a",
"text",
"file",
"of",
"treebank",
"trees",
"."
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/parse.py#L144-L160 |
16,898 | JonathanRaiman/pytreebank | pytreebank/parse.py | load_sst | def load_sst(path=None,
url='http://nlp.stanford.edu/sentiment/trainDevTestTrees_PTB.zip'):
"""
Download and read in the Stanford Sentiment Treebank dataset
into a dictionary with a 'train', 'dev', and 'test' keys. The
dictionary keys point to lists of LabeledTrees.
Arguments:
----... | python | def load_sst(path=None,
url='http://nlp.stanford.edu/sentiment/trainDevTestTrees_PTB.zip'):
"""
Download and read in the Stanford Sentiment Treebank dataset
into a dictionary with a 'train', 'dev', and 'test' keys. The
dictionary keys point to lists of LabeledTrees.
Arguments:
----... | [
"def",
"load_sst",
"(",
"path",
"=",
"None",
",",
"url",
"=",
"'http://nlp.stanford.edu/sentiment/trainDevTestTrees_PTB.zip'",
")",
":",
"if",
"path",
"is",
"None",
":",
"# find a good temporary path",
"path",
"=",
"os",
".",
"path",
".",
"expanduser",
"(",
"\"~/s... | Download and read in the Stanford Sentiment Treebank dataset
into a dictionary with a 'train', 'dev', and 'test' keys. The
dictionary keys point to lists of LabeledTrees.
Arguments:
----------
path : str, (optional defaults to ~/stanford_sentiment_treebank),
directory where the corp... | [
"Download",
"and",
"read",
"in",
"the",
"Stanford",
"Sentiment",
"Treebank",
"dataset",
"into",
"a",
"dictionary",
"with",
"a",
"train",
"dev",
"and",
"test",
"keys",
".",
"The",
"dictionary",
"keys",
"point",
"to",
"lists",
"of",
"LabeledTrees",
"."
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/parse.py#L163-L187 |
16,899 | JonathanRaiman/pytreebank | pytreebank/parse.py | LabeledTreeCorpus.labels | def labels(self):
"""
Construct a dictionary of string -> labels
Returns:
--------
OrderedDict<str, int> : string label pairs.
"""
labelings = OrderedDict()
for tree in self:
for label, line in tree.to_labeled_lines():
labe... | python | def labels(self):
"""
Construct a dictionary of string -> labels
Returns:
--------
OrderedDict<str, int> : string label pairs.
"""
labelings = OrderedDict()
for tree in self:
for label, line in tree.to_labeled_lines():
labe... | [
"def",
"labels",
"(",
"self",
")",
":",
"labelings",
"=",
"OrderedDict",
"(",
")",
"for",
"tree",
"in",
"self",
":",
"for",
"label",
",",
"line",
"in",
"tree",
".",
"to_labeled_lines",
"(",
")",
":",
"labelings",
"[",
"line",
"]",
"=",
"label",
"retu... | Construct a dictionary of string -> labels
Returns:
--------
OrderedDict<str, int> : string label pairs. | [
"Construct",
"a",
"dictionary",
"of",
"string",
"-",
">",
"labels"
] | 7b4c671d3dff661cc3677e54db817e50c5a1c666 | https://github.com/JonathanRaiman/pytreebank/blob/7b4c671d3dff661cc3677e54db817e50c5a1c666/pytreebank/parse.py#L112-L124 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.