id int32 0 165k | repo stringlengths 7 58 | path stringlengths 12 218 | func_name stringlengths 3 140 | original_string stringlengths 73 34.1k | language stringclasses 1
value | code stringlengths 73 34.1k | code_tokens list | docstring stringlengths 3 16k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 105 339 |
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32,200 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/axis/HelixAxisAligner.java | HelixAxisAligner.getMidPoint | private Point3d getMidPoint(Point3d p1, Point3d p2, Point3d p3) {
Vector3d v1 = new Vector3d();
v1.sub(p1, p2);
Vector3d v2 = new Vector3d();
v2.sub(p3, p2);
Vector3d v3 = new Vector3d();
v3.add(v1);
v3.add(v2);
v3.normalize();
// calculat the total distance between to subunits
double dTotal = v1.l... | java | private Point3d getMidPoint(Point3d p1, Point3d p2, Point3d p3) {
Vector3d v1 = new Vector3d();
v1.sub(p1, p2);
Vector3d v2 = new Vector3d();
v2.sub(p3, p2);
Vector3d v3 = new Vector3d();
v3.add(v1);
v3.add(v2);
v3.normalize();
// calculat the total distance between to subunits
double dTotal = v1.l... | [
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@param p1 center of first subunit
@param p2 center of second subunit
@param p3 center of third subunit
@return midpoint of helix | [
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32,201 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/axis/HelixAxisAligner.java | HelixAxisAligner.calcBoundaries | private void calcBoundaries() {
minBoundary.x = Double.MAX_VALUE;
maxBoundary.x = Double.MIN_VALUE;
minBoundary.y = Double.MAX_VALUE;
maxBoundary.x = Double.MIN_VALUE;
minBoundary.z = Double.MAX_VALUE;
maxBoundary.z = Double.MIN_VALUE;
xzRadiusMax = Double.MIN_VALUE;
Point3d probe = new Point3d();
f... | java | private void calcBoundaries() {
minBoundary.x = Double.MAX_VALUE;
maxBoundary.x = Double.MIN_VALUE;
minBoundary.y = Double.MAX_VALUE;
maxBoundary.x = Double.MIN_VALUE;
minBoundary.z = Double.MAX_VALUE;
maxBoundary.z = Double.MIN_VALUE;
xzRadiusMax = Double.MIN_VALUE;
Point3d probe = new Point3d();
f... | [
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32,202 | biojava/biojava | biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/jmol/MultipleAlignmentJmol.java | MultipleAlignmentJmol.getJmolString | public static String getJmolString(MultipleAlignment multAln,
List<Atom[]> transformedAtoms, ColorBrewer colorPalette,
boolean colorByBlocks) {
// Color by blocks if specified
if (colorByBlocks)
return getMultiBlockJmolString(multAln, transformedAtoms,
colorPalette, colorByBlocks);
Color[] colors =... | java | public static String getJmolString(MultipleAlignment multAln,
List<Atom[]> transformedAtoms, ColorBrewer colorPalette,
boolean colorByBlocks) {
// Color by blocks if specified
if (colorByBlocks)
return getMultiBlockJmolString(multAln, transformedAtoms,
colorPalette, colorByBlocks);
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32,203 | biojava/biojava | biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/jmol/MultipleAlignmentJmol.java | MultipleAlignmentJmol.getMultiBlockJmolString | public static String getMultiBlockJmolString(MultipleAlignment multAln,
List<Atom[]> transformedAtoms, ColorBrewer colorPalette,
boolean colorByBlocks) {
StringWriter jmol = new StringWriter();
jmol.append(DEFAULT_SCRIPT);
jmol.append("select *; color lightgrey; backbone 0.1; ");
int blockNum = multAln.... | java | public static String getMultiBlockJmolString(MultipleAlignment multAln,
List<Atom[]> transformedAtoms, ColorBrewer colorPalette,
boolean colorByBlocks) {
StringWriter jmol = new StringWriter();
jmol.append(DEFAULT_SCRIPT);
jmol.append("select *; color lightgrey; backbone 0.1; ");
int blockNum = multAln.... | [
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32,204 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/contact/GridCell.java | GridCell.getContactsWithinCell | public List<Contact> getContactsWithinCell(){
List<Contact> contacts = new ArrayList<Contact>();
Point3d[] iAtoms = grid.getIAtoms();
Point3d[] jAtoms = grid.getJAtoms();
double cutoff = grid.getCutoff();
if (jAtoms==null) {
for (int i:iIndices) {
for (int j:iIndices) {
if (j>i) {
double ... | java | public List<Contact> getContactsWithinCell(){
List<Contact> contacts = new ArrayList<Contact>();
Point3d[] iAtoms = grid.getIAtoms();
Point3d[] jAtoms = grid.getJAtoms();
double cutoff = grid.getCutoff();
if (jAtoms==null) {
for (int i:iIndices) {
for (int j:iIndices) {
if (j>i) {
double ... | [
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If {@link Grid#getJAtoms()} is null, distances are within the iAtoms only
@return | [
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32,205 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/contact/GridCell.java | GridCell.hasContactToAtom | public boolean hasContactToAtom(Point3d[] iAtoms, Point3d[] jAtoms, Point3d query, double cutoff) {
for( int i : iIndices ) {
double distance = iAtoms[i].distance(query);
if( distance<cutoff)
return true;
}
if (jAtoms!=null) {
for( int i : jIndices ) {
double distance = jAtoms[i].distance(query);... | java | public boolean hasContactToAtom(Point3d[] iAtoms, Point3d[] jAtoms, Point3d query, double cutoff) {
for( int i : iIndices ) {
double distance = iAtoms[i].distance(query);
if( distance<cutoff)
return true;
}
if (jAtoms!=null) {
for( int i : jIndices ) {
double distance = jAtoms[i].distance(query);... | [
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@param iAtoms the first set of atoms to which the iIndices correspond
@param jAtoms the second set of atoms to which the jIndices correspond, or null
@param query test point
@param cutoff
@return | [
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32,206 | biojava/biojava | biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/MultipleAlignmentJmolDisplay.java | MultipleAlignmentJmolDisplay.showMultipleAligmentPanel | public static void showMultipleAligmentPanel(MultipleAlignment multAln,
AbstractAlignmentJmol jmol) throws StructureException {
MultipleAligPanel me = new MultipleAligPanel(multAln, jmol);
JFrame frame = new JFrame();
frame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
frame.setTitle(jmol.getTitle());... | java | public static void showMultipleAligmentPanel(MultipleAlignment multAln,
AbstractAlignmentJmol jmol) throws StructureException {
MultipleAligPanel me = new MultipleAligPanel(multAln, jmol);
JFrame frame = new JFrame();
frame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
frame.setTitle(jmol.getTitle());... | [
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The panel can communicate with the Jmol 3D visualization by
selecting the aligned residues of every structure.
@param multAln
@param jmol
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32,207 | biojava/biojava | biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/MultipleAlignmentJmolDisplay.java | MultipleAlignmentJmolDisplay.display | public static MultipleAlignmentJmol display(MultipleAlignment multAln)
throws StructureException {
List<Atom[]> rotatedAtoms = MultipleAlignmentDisplay.getRotatedAtoms(multAln);
MultipleAlignmentJmol jmol =
new MultipleAlignmentJmol(multAln, rotatedAtoms);
jmol.setTitle(jmol.getStructure().getPDBHeader(... | java | public static MultipleAlignmentJmol display(MultipleAlignment multAln)
throws StructureException {
List<Atom[]> rotatedAtoms = MultipleAlignmentDisplay.getRotatedAtoms(multAln);
MultipleAlignmentJmol jmol =
new MultipleAlignmentJmol(multAln, rotatedAtoms);
jmol.setTitle(jmol.getStructure().getPDBHeader(... | [
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New structures are downloaded if they were
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@param multAln
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@throws StructureException | [
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32,208 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/domain/LocalProteinDomainParser.java | LocalProteinDomainParser.suggestDomains | public static List<Domain> suggestDomains(Structure s) throws StructureException{
Atom[] ca = StructureTools.getRepresentativeAtomArray(s);
return suggestDomains(ca);
} | java | public static List<Domain> suggestDomains(Structure s) throws StructureException{
Atom[] ca = StructureTools.getRepresentativeAtomArray(s);
return suggestDomains(ca);
} | [
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@param s the protein structure
@return a list of possible domains
@throws StructureException | [
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32,209 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/domain/LocalProteinDomainParser.java | LocalProteinDomainParser.suggestDomains | public static List<Domain> suggestDomains(Atom[] ca) throws StructureException{
GetDistanceMatrix distMaxCalculator = new GetDistanceMatrix();
PDPDistanceMatrix pdpMatrix = distMaxCalculator.getDistanceMatrix(ca);
Domain dom = new Domain();
Chain c = ca[0].getGroup().getChain();
dom.setId("D"+c.getStruct... | java | public static List<Domain> suggestDomains(Atom[] ca) throws StructureException{
GetDistanceMatrix distMaxCalculator = new GetDistanceMatrix();
PDPDistanceMatrix pdpMatrix = distMaxCalculator.getDistanceMatrix(ca);
Domain dom = new Domain();
Chain c = ca[0].getGroup().getChain();
dom.setId("D"+c.getStruct... | [
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@param ca an array of Calpha atoms
@return a list of possible domains
@throws StructureException | [
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32,210 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/align/ce/GuiWrapper.java | GuiWrapper.showStructure | public static void showStructure(Structure structure)
throws ClassNotFoundException, NoSuchMethodException,
InvocationTargetException, IllegalAccessException, InstantiationException{
Class<?> structureAlignmentJmol = Class.forName(strucAligJmol);
Object strucAligJ = structureAlignmentJmol.newInstance();
... | java | public static void showStructure(Structure structure)
throws ClassNotFoundException, NoSuchMethodException,
InvocationTargetException, IllegalAccessException, InstantiationException{
Class<?> structureAlignmentJmol = Class.forName(strucAligJmol);
Object strucAligJ = structureAlignmentJmol.newInstance();
... | [
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32,211 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/align/util/AtomCache.java | AtomCache.notifyShutdown | public void notifyShutdown() {
// System.out.println(" AtomCache got notify shutdown..");
if (pdpprovider != null) {
if (pdpprovider instanceof RemotePDPProvider) {
RemotePDPProvider remotePDP = (RemotePDPProvider) pdpprovider;
remotePDP.flushCache();
}
}
// todo: use a SCOP implementation that i... | java | public void notifyShutdown() {
// System.out.println(" AtomCache got notify shutdown..");
if (pdpprovider != null) {
if (pdpprovider instanceof RemotePDPProvider) {
RemotePDPProvider remotePDP = (RemotePDPProvider) pdpprovider;
remotePDP.flushCache();
}
}
// todo: use a SCOP implementation that i... | [
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32,212 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/align/util/AtomCache.java | AtomCache.getStructureForPdbId | public Structure getStructureForPdbId(String pdbId) throws IOException, StructureException {
if(pdbId == null)
return null;
if(pdbId.length() != 4) {
throw new StructureException("Unrecognized PDB ID: "+pdbId);
}
while (checkLoading(pdbId)) {
// waiting for loading to be finished...
try {
Threa... | java | public Structure getStructureForPdbId(String pdbId) throws IOException, StructureException {
if(pdbId == null)
return null;
if(pdbId.length() != 4) {
throw new StructureException("Unrecognized PDB ID: "+pdbId);
}
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// waiting for loading to be finished...
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32,213 | biojava/biojava | biojava-structure-gui/src/main/java/org/biojava/nbio/structure/align/gui/DotPlotPanel.java | DotPlotPanel.showDotPlotJFrame | private static JFrame showDotPlotJFrame(AFPChain afpChain ) {
DotPlotPanel dotplot = new DotPlotPanel(afpChain);
//Create JFrame
String title = String.format("Dot plot of %s vs. %s", afpChain.getName1(),afpChain.getName2());
// Create window
JFrame frame = new JFrame(title);
frame.addWindowListener(new ... | java | private static JFrame showDotPlotJFrame(AFPChain afpChain ) {
DotPlotPanel dotplot = new DotPlotPanel(afpChain);
//Create JFrame
String title = String.format("Dot plot of %s vs. %s", afpChain.getName1(),afpChain.getName2());
// Create window
JFrame frame = new JFrame(title);
frame.addWindowListener(new ... | [
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32,214 | biojava/biojava | biojava-structure/src/main/java/org/biojava/nbio/structure/io/SSBondImpl.java | SSBondImpl.toPDB | @Override
public void toPDB(StringBuffer buf){
/*12 - 14 LString(3) "CYS" Residue name.
16 Character chainID1 Chain identifier.
18 - 21 Integer seqNum1 Residue sequence number.
22 AChar icode1 Insertion code.
26 - 28 ... | java | @Override
public void toPDB(StringBuffer buf){
/*12 - 14 LString(3) "CYS" Residue name.
16 Character chainID1 Chain identifier.
18 - 21 Integer seqNum1 Residue sequence number.
22 AChar icode1 Insertion code.
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32,215 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.getSurvivalTimePercentile | public Double getSurvivalTimePercentile(String group, double percentile) {
StrataInfo si = sfi.getStrataInfoHashMap().get(group);
ArrayList<Double> percentage = si.getSurv();
Integer percentileIndex = null;
for (int i = 0; i < percentage.size(); i++) {
if (percentage.get(i) == percentile) {
if (i + 1 < ... | java | public Double getSurvivalTimePercentile(String group, double percentile) {
StrataInfo si = sfi.getStrataInfoHashMap().get(group);
ArrayList<Double> percentage = si.getSurv();
Integer percentileIndex = null;
for (int i = 0; i < percentage.size(); i++) {
if (percentage.get(i) == percentile) {
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32,216 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.setSurvivalData | public void setSurvivalData(ArrayList<String> title, SurvFitInfo sfi, Double userSetMaxTime) {
this.title = title;
LinkedHashMap<String, StrataInfo> strataInfoHashMap = sfi.getStrataInfoHashMap();
Double mTime = null;
for (StrataInfo si : strataInfoHashMap.values()) {
for (double t : si.getTime()) {
if (... | java | public void setSurvivalData(ArrayList<String> title, SurvFitInfo sfi, Double userSetMaxTime) {
this.title = title;
LinkedHashMap<String, StrataInfo> strataInfoHashMap = sfi.getStrataInfoHashMap();
Double mTime = null;
for (StrataInfo si : strataInfoHashMap.values()) {
for (double t : si.getTime()) {
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32,217 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.setSurvivalData | public void setSurvivalData(ArrayList<String> title, LinkedHashMap<String, ArrayList<CensorStatus>> survivalData, Boolean useWeighted) throws Exception {
this.setSurvivalData(title, survivalData, null, useWeighted);
} | java | public void setSurvivalData(ArrayList<String> title, LinkedHashMap<String, ArrayList<CensorStatus>> survivalData, Boolean useWeighted) throws Exception {
this.setSurvivalData(title, survivalData, null, useWeighted);
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32,218 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.saveSurvivalData | public void saveSurvivalData(String fileName) throws Exception {
FileWriter fw = new FileWriter(fileName);
fw.write("index\tTIME\tSTATUS\tGROUP\r\n");
int index = 0;
for (String group : survivalData.keySet()) {
ArrayList<CensorStatus> sd = survivalData.get(group);
for (CensorStatus cs : sd) {
String l... | java | public void saveSurvivalData(String fileName) throws Exception {
FileWriter fw = new FileWriter(fileName);
fw.write("index\tTIME\tSTATUS\tGROUP\r\n");
int index = 0;
for (String group : survivalData.keySet()) {
ArrayList<CensorStatus> sd = survivalData.get(group);
for (CensorStatus cs : sd) {
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32,219 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.getTimeX | private int getTimeX(double value) {
double d = left + (((right - left) * value) / (maxTime - minTime));
return (int) d;
} | java | private int getTimeX(double value) {
double d = left + (((right - left) * value) / (maxTime - minTime));
return (int) d;
} | [
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32,220 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.getPercentageY | private int getPercentageY(double value) {
value = 1.0 - value;
double d = top + (((bottom - top) * value) / (maxPercentage - minPercentage));
return (int) d;
} | java | private int getPercentageY(double value) {
value = 1.0 - value;
double d = top + (((bottom - top) * value) / (maxPercentage - minPercentage));
return (int) d;
} | [
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32,221 | biojava/biojava | biojava-survival/src/main/java/org/biojava/nbio/survival/kaplanmeier/figure/KaplanMeierFigure.java | KaplanMeierFigure.savePNGKMNumRisk | public void savePNGKMNumRisk(String fileName) {
if (fileName.startsWith("null") || fileName.startsWith("Null") || fileName.startsWith("NULL")) {
return;
}
this.fileName = fileName;
NumbersAtRiskPanel numbersAtRiskPanel = new NumbersAtRiskPanel();
numbersAtRiskPanel.setKaplanMeierFigure(this);
numbersAtR... | java | public void savePNGKMNumRisk(String fileName) {
if (fileName.startsWith("null") || fileName.startsWith("Null") || fileName.startsWith("NULL")) {
return;
}
this.fileName = fileName;
NumbersAtRiskPanel numbersAtRiskPanel = new NumbersAtRiskPanel();
numbersAtRiskPanel.setKaplanMeierFigure(this);
numbersAtR... | [
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32,222 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/spring/StubRunnerConfiguration.java | StubRunnerConfiguration.batchStubRunner | @Bean
public BatchStubRunner batchStubRunner() {
StubRunnerOptionsBuilder builder = builder();
if (this.props.getProxyHost() != null) {
builder.withProxy(this.props.getProxyHost(), this.props.getProxyPort());
}
StubRunnerOptions stubRunnerOptions = builder.build();
BatchStubRunner batchStubRunner = new Ba... | java | @Bean
public BatchStubRunner batchStubRunner() {
StubRunnerOptionsBuilder builder = builder();
if (this.props.getProxyHost() != null) {
builder.withProxy(this.props.getProxyHost(), this.props.getProxyPort());
}
StubRunnerOptions stubRunnerOptions = builder.build();
BatchStubRunner batchStubRunner = new Ba... | [
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32,223 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/ContractProjectUpdater.java | ContractProjectUpdater.updateContractProject | public void updateContractProject(String projectName, Path rootStubsFolder) {
File clonedRepo = this.gitContractsRepo
.clonedRepo(this.stubRunnerOptions.stubRepositoryRoot);
GitStubDownloaderProperties properties = new GitStubDownloaderProperties(
this.stubRunnerOptions.stubRepositoryRoot, this.stubRunnerOp... | java | public void updateContractProject(String projectName, Path rootStubsFolder) {
File clonedRepo = this.gitContractsRepo
.clonedRepo(this.stubRunnerOptions.stubRepositoryRoot);
GitStubDownloaderProperties properties = new GitStubDownloaderProperties(
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32,224 | spring-cloud/spring-cloud-contract | spring-cloud-contract-spec/src/main/groovy/repackaged/nl/flotsam/xeger/Xeger.java | Xeger.getRandomInt | static int getRandomInt(int min, int max, Random random) {
// Use random.nextInt as it guarantees a uniform distribution
int maxForRandom = max - min + 1;
return random.nextInt(maxForRandom) + min;
} | java | static int getRandomInt(int min, int max, Random random) {
// Use random.nextInt as it guarantees a uniform distribution
int maxForRandom = max - min + 1;
return random.nextInt(maxForRandom) + min;
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32,225 | spring-cloud/spring-cloud-contract | spring-cloud-contract-spec/src/main/groovy/repackaged/nl/flotsam/xeger/Xeger.java | Xeger.generate | public String generate() {
StringBuilder builder = new StringBuilder();
int counter = 0;
generate(builder, this.automaton.getInitialState(), counter);
return builder.toString();
} | java | public String generate() {
StringBuilder builder = new StringBuilder();
int counter = 0;
generate(builder, this.automaton.getInitialState(), counter);
return builder.toString();
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32,226 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/AetherFactories.java | AetherFactories.fromSystemPropOrEnv | private static String fromSystemPropOrEnv(String prop) {
String resolvedProp = System.getProperty(prop);
if (StringUtils.hasText(resolvedProp)) {
return resolvedProp;
}
return System.getenv(prop);
} | java | private static String fromSystemPropOrEnv(String prop) {
String resolvedProp = System.getProperty(prop);
if (StringUtils.hasText(resolvedProp)) {
return resolvedProp;
}
return System.getenv(prop);
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32,227 | spring-cloud/spring-cloud-contract | spring-cloud-contract-wiremock/src/main/java/org/springframework/cloud/contract/wiremock/restdocs/ContractResultHandler.java | WireMockHttpServletRequestAdapter.getBody | @Override
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32,228 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/GitRepo.java | GitRepo.cloneProject | File cloneProject(URI projectUri) {
try {
log.info("Cloning repo from [" + projectUri + "] to [" + this.basedir + "]");
Git git = cloneToBasedir(projectUri, this.basedir);
if (git != null) {
git.close();
}
File clonedRepo = git.getRepository().getWorkTree();
log.info("Cloned repo to [" + clonedR... | java | File cloneProject(URI projectUri) {
try {
log.info("Cloning repo from [" + projectUri + "] to [" + this.basedir + "]");
Git git = cloneToBasedir(projectUri, this.basedir);
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32,229 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/GitRepo.java | GitRepo.checkout | void checkout(File project, String branch) {
try {
String currentBranch = currentBranch(project);
if (currentBranch.equals(branch)) {
log.info("Won't check out the same branch. Skipping");
return;
}
log.info("Checking out branch [" + branch + "]");
checkoutBranch(project, branch);
log.info("... | java | void checkout(File project, String branch) {
try {
String currentBranch = currentBranch(project);
if (currentBranch.equals(branch)) {
log.info("Won't check out the same branch. Skipping");
return;
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32,230 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/GitRepo.java | GitRepo.pull | void pull(File project) {
try {
try (Git git = this.gitFactory.open(project)) {
PullCommand command = this.gitFactory.pull(git);
command.setRebase(true).call();
}
}
catch (Exception e) {
throw new IllegalStateException(e);
}
} | java | void pull(File project) {
try {
try (Git git = this.gitFactory.open(project)) {
PullCommand command = this.gitFactory.pull(git);
command.setRebase(true).call();
}
}
catch (Exception e) {
throw new IllegalStateException(e);
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32,231 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/GitRepo.java | GitRepo.commit | CommitResult commit(File project, String message) {
try (Git git = this.gitFactory.open(file(project))) {
git.add().addFilepattern(".").call();
git.commit().setAllowEmpty(false).setMessage(message).call();
log.info("Commited successfully with message [" + message + "]");
return CommitResult.SUCCESSFUL;
... | java | CommitResult commit(File project, String message) {
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32,232 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/GitRepo.java | GitRepo.pushCurrentBranch | void pushCurrentBranch(File project) {
try (Git git = this.gitFactory.open(file(project))) {
this.gitFactory.push(git).call();
}
catch (Exception e) {
throw new IllegalStateException(e);
}
} | java | void pushCurrentBranch(File project) {
try (Git git = this.gitFactory.open(file(project))) {
this.gitFactory.push(git).call();
}
catch (Exception e) {
throw new IllegalStateException(e);
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32,233 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/provider/wiremock/WireMockHttpServerStub.java | WireMockHttpServerStub.helpers | @Deprecated
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helpers.put(HandlebarsJsonPathHelper.NAME, new HandlebarsJsonPathHelper());
helpers.put(HandlebarsEscapeHelper.NAME, new HandlebarsEscapeHelper());
return helpers;
} | java | @Deprecated
protected Map<String, Helper> helpers() {
Map<String, Helper> helpers = new HashMap<>();
helpers.put(HandlebarsJsonPathHelper.NAME, new HandlebarsJsonPathHelper());
helpers.put(HandlebarsEscapeHelper.NAME, new HandlebarsEscapeHelper());
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32,234 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/util/ContractVerifierUtil.java | ContractVerifierUtil.fileToBytes | public static byte[] fileToBytes(Object testClass, String relativePath) {
try {
URL url = testClass.getClass().getResource(relativePath);
if (url == null) {
throw new FileNotFoundException(relativePath);
}
return Files.readAllBytes(Paths.get(url.toURI()));
}
catch (IOException | URISyntaxException... | java | public static byte[] fileToBytes(Object testClass, String relativePath) {
try {
URL url = testClass.getClass().getResource(relativePath);
if (url == null) {
throw new FileNotFoundException(relativePath);
}
return Files.readAllBytes(Paths.get(url.toURI()));
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32,235 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/util/ContractVerifierUtil.java | ContractVerifierUtil.valueFromXPath | public static String valueFromXPath(Document parsedXml, String path) {
XPath xPath = XPathFactory.newInstance().newXPath();
try {
return xPath.evaluate(path, parsedXml.getDocumentElement());
}
catch (XPathExpressionException exception) {
LOG.error("Incorrect xpath provided: " + path, exception);
throw ... | java | public static String valueFromXPath(Document parsedXml, String path) {
XPath xPath = XPathFactory.newInstance().newXPath();
try {
return xPath.evaluate(path, parsedXml.getDocumentElement());
}
catch (XPathExpressionException exception) {
LOG.error("Incorrect xpath provided: " + path, exception);
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32,236 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/ContractDownloader.java | ContractDownloader.unpackedDownloadedContracts | public File unpackedDownloadedContracts(ContractVerifierConfigProperties config) {
File contractsDirectory = unpackAndDownloadContracts();
updatePropertiesWithInclusion(contractsDirectory, config);
return contractsDirectory;
} | java | public File unpackedDownloadedContracts(ContractVerifierConfigProperties config) {
File contractsDirectory = unpackAndDownloadContracts();
updatePropertiesWithInclusion(contractsDirectory, config);
return contractsDirectory;
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32,237 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.allElementsMatch | public CollectionAssert allElementsMatch(String regex) {
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32,238 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.hasFlattenedSizeGreaterThanOrEqualTo | public CollectionAssert hasFlattenedSizeGreaterThanOrEqualTo(int size) {
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int flattenedSize = flattenedSize(0, this.actual);
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failWithMessage("The flattened size <%s> is not greater or equal to <%s>",
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}
return this;
} | java | public CollectionAssert hasFlattenedSizeGreaterThanOrEqualTo(int size) {
isNotNull();
int flattenedSize = flattenedSize(0, this.actual);
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failWithMessage("The flattened size <%s> is not greater or equal to <%s>",
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32,239 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.hasFlattenedSizeLessThanOrEqualTo | public CollectionAssert hasFlattenedSizeLessThanOrEqualTo(int size) {
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32,240 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.hasFlattenedSizeBetween | public CollectionAssert hasFlattenedSizeBetween(int lowerBound, int higherBound) {
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32,241 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.hasSizeGreaterThanOrEqualTo | public CollectionAssert hasSizeGreaterThanOrEqualTo(int size) {
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32,242 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.hasSizeLessThanOrEqualTo | public CollectionAssert hasSizeLessThanOrEqualTo(int size) {
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32,243 | spring-cloud/spring-cloud-contract | spring-cloud-contract-verifier/src/main/java/org/springframework/cloud/contract/verifier/assertion/CollectionAssert.java | CollectionAssert.hasSizeBetween | public CollectionAssert hasSizeBetween(int lowerBound, int higherBound) {
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32,244 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/util/StubsParser.java | StubsParser.fromString | public static List<StubConfiguration> fromString(Collection<String> collection,
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... | java | public static List<StubConfiguration> fromString(Collection<String> collection,
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32,245 | spring-cloud/spring-cloud-contract | spring-cloud-contract-stub-runner/src/main/java/org/springframework/cloud/contract/stubrunner/StubConfiguration.java | StubConfiguration.groupIdAndArtifactMatches | public boolean groupIdAndArtifactMatches(String ivyNotationAsString) {
String[] parts = ivyNotationFrom(ivyNotationAsString);
String groupId = parts[0];
String artifactId = parts[1];
if (groupId == null) {
return this.artifactId.equals(artifactId);
}
return this.groupId.equals(groupId) && this.artifactId... | java | public boolean groupIdAndArtifactMatches(String ivyNotationAsString) {
String[] parts = ivyNotationFrom(ivyNotationAsString);
String groupId = parts[0];
String artifactId = parts[1];
if (groupId == null) {
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}
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32,246 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/util/ServiceLoaderUtils.java | ServiceLoaderUtils.load | public static <T> List<T> load(final Class<T> type, final ClassLoader classLoader) {
final List<T> loaded = new ArrayList<>();
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try {
final T next = iterato... | java | public static <T> List<T> load(final Class<T> type, final ClassLoader classLoader) {
final List<T> loaded = new ArrayList<>();
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32,247 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/internal/AllureThreadContext.java | AllureThreadContext.start | public void start(final String uuid) {
Objects.requireNonNull(uuid, "step uuid");
context.get().push(uuid);
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Objects.requireNonNull(uuid, "step uuid");
context.get().push(uuid);
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32,248 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/internal/AllureThreadContext.java | AllureThreadContext.stop | public Optional<String> stop() {
final LinkedList<String> uuids = context.get();
if (!uuids.isEmpty()) {
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}
return Optional.empty();
} | java | public Optional<String> stop() {
final LinkedList<String> uuids = context.get();
if (!uuids.isEmpty()) {
return Optional.of(uuids.pop());
}
return Optional.empty();
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32,249 | allure-framework/allure-java | allure-cucumber4-jvm/src/main/java/io/qameta/allure/cucumber4jvm/LabelBuilder.java | LabelBuilder.tryHandleNamedLink | private void tryHandleNamedLink(final String tagString) {
final String namedLinkPatternString = PLAIN_LINK + "\\.(\\w+-?)+=(\\w+(-|_)?)+";
final Pattern namedLinkPattern = Pattern.compile(namedLinkPatternString, Pattern.CASE_INSENSITIVE);
if (namedLinkPattern.matcher(tagString).matches()) {
... | java | private void tryHandleNamedLink(final String tagString) {
final String namedLinkPatternString = PLAIN_LINK + "\\.(\\w+-?)+=(\\w+(-|_)?)+";
final Pattern namedLinkPattern = Pattern.compile(namedLinkPatternString, Pattern.CASE_INSENSITIVE);
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32,250 | allure-framework/allure-java | allure-java-migration/src/main/java/io/qameta/allure/aspects/Allure1Utils.java | Allure1Utils.getParametersAsString | public static String getParametersAsString(final Object... parameters) {
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... | java | public static String getParametersAsString(final Object... parameters) {
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32,251 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.startPrepareFixture | public void startPrepareFixture(final String containerUuid, final String uuid, final FixtureResult result) {
storage.getContainer(containerUuid).ifPresent(container -> {
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container.getBefores().add(result);
}
});
notifier.beforeFixt... | java | public void startPrepareFixture(final String containerUuid, final String uuid, final FixtureResult result) {
storage.getContainer(containerUuid).ifPresent(container -> {
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container.getBefores().add(result);
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32,252 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.startTearDownFixture | public void startTearDownFixture(final String containerUuid, final String uuid, final FixtureResult result) {
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notifier.beforeFix... | java | public void startTearDownFixture(final String containerUuid, final String uuid, final FixtureResult result) {
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32,253 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.startFixture | private void startFixture(final String uuid, final FixtureResult result) {
storage.put(uuid, result);
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result.setStart(System.currentTimeMillis());
threadContext.clear();
threadContext.start(uuid);
} | java | private void startFixture(final String uuid, final FixtureResult result) {
storage.put(uuid, result);
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32,254 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.updateFixture | public void updateFixture(final String uuid, final Consumer<FixtureResult> update) {
final Optional<FixtureResult> found = storage.getFixture(uuid);
if (!found.isPresent()) {
LOGGER.error("Could not update test fixture: test fixture with uuid {} not found", uuid);
return;
... | java | public void updateFixture(final String uuid, final Consumer<FixtureResult> update) {
final Optional<FixtureResult> found = storage.getFixture(uuid);
if (!found.isPresent()) {
LOGGER.error("Could not update test fixture: test fixture with uuid {} not found", uuid);
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32,255 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.stopFixture | public void stopFixture(final String uuid) {
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32,256 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.startStep | public void startStep(final String parentUuid, final String uuid, final StepResult result) {
notifier.beforeStepStart(result);
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result.setStart(System.currentTimeMillis());
threadContext.start(uuid);
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notifier.beforeStepStart(result);
result.setStage(Stage.RUNNING);
result.setStart(System.currentTimeMillis());
threadContext.start(uuid);
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32,257 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.updateStep | public void updateStep(final String uuid, final Consumer<StepResult> update) {
final Optional<StepResult> found = storage.getStep(uuid);
if (!found.isPresent()) {
LOGGER.error("Could not update step: step with uuid {} not found", uuid);
return;
}
final StepResult... | java | public void updateStep(final String uuid, final Consumer<StepResult> update) {
final Optional<StepResult> found = storage.getStep(uuid);
if (!found.isPresent()) {
LOGGER.error("Could not update step: step with uuid {} not found", uuid);
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32,258 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.stopStep | public void stopStep(final String uuid) {
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LOGGER.error("Could not stop step: step with uuid {} not found", uuid);
return;
}
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final Optional<StepResult> found = storage.getStep(uuid);
if (!found.isPresent()) {
LOGGER.error("Could not stop step: step with uuid {} not found", uuid);
return;
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32,259 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/AllureLifecycle.java | AllureLifecycle.addAttachment | public void addAttachment(final String name, final String type,
final String fileExtension, final InputStream stream) {
writeAttachment(prepareAttachment(name, type, fileExtension), stream);
} | java | public void addAttachment(final String name, final String type,
final String fileExtension, final InputStream stream) {
writeAttachment(prepareAttachment(name, type, fileExtension), stream);
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32,260 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/util/AnnotationUtils.java | AnnotationUtils.getLinks | public static List<Link> getLinks(final AnnotatedElement annotatedElement) {
final List<Link> result = new ArrayList<>();
result.addAll(extractLinks(annotatedElement, io.qameta.allure.Link.class, ResultsUtils::createLink));
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final List<Link> result = new ArrayList<>();
result.addAll(extractLinks(annotatedElement, io.qameta.allure.Link.class, ResultsUtils::createLink));
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32,261 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/util/AnnotationUtils.java | AnnotationUtils.getLinks | public static List<Link> getLinks(final Collection<Annotation> annotations) {
final List<Link> result = new ArrayList<>();
result.addAll(extractLinks(annotations, io.qameta.allure.Link.class, ResultsUtils::createLink));
result.addAll(extractLinks(annotations, io.qameta.allure.Issue.class, Result... | java | public static List<Link> getLinks(final Collection<Annotation> annotations) {
final List<Link> result = new ArrayList<>();
result.addAll(extractLinks(annotations, io.qameta.allure.Link.class, ResultsUtils::createLink));
result.addAll(extractLinks(annotations, io.qameta.allure.Issue.class, Result... | [
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32,262 | allure-framework/allure-java | allure-java-commons/src/main/java/io/qameta/allure/util/AnnotationUtils.java | AnnotationUtils.getLabels | public static Set<Label> getLabels(final Collection<Annotation> annotations) {
return annotations.stream()
.flatMap(AnnotationUtils::extractRepeatable)
.map(AnnotationUtils::getMarks)
.flatMap(Collection::stream)
.collect(Collectors.toSet());
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32,263 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.isRunning | public boolean isRunning() {
try {
client.get("/");
return true;
} catch (IOException e) {
LOGGER.debug("isRunning()", e);
return false;
}
} | java | public boolean isRunning() {
try {
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try {
View resultView = client.get(UrlUtils.toViewBaseUrl(folder, name) + "/", View.class);
resultView.setClient(client);
// TODO: Think about the following? Does there exists a simpler/more
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try {
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32,265 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.getJob | public JobWithDetails getJob(String jobName) throws IOException {
return getJob(null, UrlUtils.toFullJobPath(jobName));
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32,266 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.getJob | public JobWithDetails getJob(FolderJob folder, String jobName) throws IOException {
try {
JobWithDetails job = client.get(UrlUtils.toJobBaseUrl(folder, jobName), JobWithDetails.class);
job.setClient(client);
return job;
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try {
JobWithDetails job = client.get(UrlUtils.toJobBaseUrl(folder, jobName), JobWithDetails.class);
job.setClient(client);
return job;
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32,267 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.createView | public JenkinsServer createView(String viewName, String viewXml) throws IOException {
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32,268 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.createView | public JenkinsServer createView(String viewName, String viewXml, Boolean crumbFlag) throws IOException {
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32,269 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.getJobXml | public String getJobXml(FolderJob folder, String jobName) throws IOException {
return client.get(UrlUtils.toJobBaseUrl(folder, jobName) + "/config.xml");
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32,270 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.getLabel | public LabelWithDetails getLabel(String labelName) throws IOException {
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32,271 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.updateView | public JenkinsServer updateView(String viewName, String viewXml) throws IOException {
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32,272 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.enableJob | public JenkinsServer enableJob(String jobName, boolean crumbFlag) throws IOException {
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32,273 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.runScript | public String runScript(String script, boolean crumbFlag) throws IOException {
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32,274 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/JenkinsServer.java | JenkinsServer.restart | public JenkinsServer restart(Boolean crumbFlag) throws IOException {
try {
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LOGGER.error("restart()", e);
}
return this;
} | java | public JenkinsServer restart(Boolean crumbFlag) throws IOException {
try {
client.post("/restart", crumbFlag);
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LOGGER.error("restart()", e);
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32,275 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/JenkinsHttpClient.java | JenkinsHttpClient.addAuthentication | protected static HttpClientBuilder addAuthentication(final HttpClientBuilder builder,
final URI uri, final String username,
String password) {
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CredentialsProvider provider = new BasicCredentialsProvider();
AuthScope scope = new AuthSco... | java | protected static HttpClientBuilder addAuthentication(final HttpClientBuilder builder,
final URI uri, final String username,
String password) {
if (isNotBlank(username)) {
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32,276 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/util/ResponseUtils.java | ResponseUtils.getJenkinsVersion | public static String getJenkinsVersion(final HttpResponse response) {
final Header[] hdrs = response.getHeaders("X-Jenkins");
return hdrs.length == 0 ? "" : hdrs[0].getValue();
} | java | public static String getJenkinsVersion(final HttpResponse response) {
final Header[] hdrs = response.getHeaders("X-Jenkins");
return hdrs.length == 0 ? "" : hdrs[0].getValue();
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32,277 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/JobWithDetails.java | JobWithDetails.getBuildByNumber | public Optional<Build> getBuildByNumber(final int buildNumber) {
return builds.stream().filter(isBuildNumberEqualTo(buildNumber)).findFirst();
} | java | public Optional<Build> getBuildByNumber(final int buildNumber) {
return builds.stream().filter(isBuildNumberEqualTo(buildNumber)).findFirst();
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32,278 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/util/UrlUtils.java | UrlUtils.toJobBaseUrl | public static String toJobBaseUrl(final FolderJob folder, final String jobName) {
final StringBuilder sb = new StringBuilder(DEFAULT_BUFFER_SIZE);
sb.append(UrlUtils.toBaseUrl(folder));
if (sb.charAt(sb.length() - 1) != '/') sb.append('/');
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final StringBuilder sb = new StringBuilder(DEFAULT_BUFFER_SIZE);
sb.append(UrlUtils.toBaseUrl(folder));
if (sb.charAt(sb.length() - 1) != '/') sb.append('/');
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32,279 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/util/UrlUtils.java | UrlUtils.toViewBaseUrl | public static String toViewBaseUrl(final FolderJob folder, final String name) {
final StringBuilder sb = new StringBuilder(DEFAULT_BUFFER_SIZE);
final String base = UrlUtils.toBaseUrl(folder);
sb.append(base);
if (!base.endsWith("/")) sb.append('/');
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... | java | public static String toViewBaseUrl(final FolderJob folder, final String name) {
final StringBuilder sb = new StringBuilder(DEFAULT_BUFFER_SIZE);
final String base = UrlUtils.toBaseUrl(folder);
sb.append(base);
if (!base.endsWith("/")) sb.append('/');
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32,280 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/util/UrlUtils.java | UrlUtils.toFullJobPath | public static String toFullJobPath(final String jobName) {
final String[] parts = jobName.split("/");
if (parts.length == 1) return parts[0];
final StringBuilder sb = new StringBuilder(DEFAULT_BUFFER_SIZE);
for (int i = 0; i < parts.length; i++) {
sb.append(parts[i])... | java | public static String toFullJobPath(final String jobName) {
final String[] parts = jobName.split("/");
if (parts.length == 1) return parts[0];
final StringBuilder sb = new StringBuilder(DEFAULT_BUFFER_SIZE);
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32,281 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/util/UrlUtils.java | UrlUtils.toJsonApiUri | public static URI toJsonApiUri(final URI uri, final String context, final String path) {
String p = path;
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final String[] components = p.split("\\?"... | java | public static URI toJsonApiUri(final URI uri, final String context, final String path) {
String p = path;
if (!p.matches("(?i)https?://.*")) p = join(context, p);
if (!p.contains("?")) {
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32,282 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/client/util/UrlUtils.java | UrlUtils.toNoApiUri | public static URI toNoApiUri(final URI uri, final String context, final String path) {
final String p = path.matches("(?i)https?://.*") ? path : join(context, path);
return uri.resolve("/").resolve(p);
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final String p = path.matches("(?i)https?://.*") ? path : join(context, path);
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32,283 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/Job.java | Job.getFileFromWorkspace | public String getFileFromWorkspace(String fileName) throws IOException {
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byte[] buffer = new byte[1024];
int length;
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InputStream is = client.getFile(URI.create(url + "/ws/" + fileName));
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byte[] buffer = new byte[1024];
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32,284 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/Job.java | Job.build | public QueueReference build() throws IOException {
ExtractHeader location = client.post(url + "build", null, ExtractHeader.class, false);
return new QueueReference(location.getLocation());
} | java | public QueueReference build() throws IOException {
ExtractHeader location = client.post(url + "build", null, ExtractHeader.class, false);
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32,285 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/Job.java | Job.build | public QueueReference build(Map<String, String> params, Map<String, File> fileParams) throws IOException {
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32,286 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/Job.java | Job.build | public QueueReference build(Map<String, String> params, Map<String, File> fileParams, boolean crumbFlag) throws IOException {
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32,287 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/helper/ComparableVersion.java | ComparableVersion.main | public static void main( String... args )
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}
ComparableVersion prev = null;
int i = 1;
for ( String versio... | java | public static void main( String... args )
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32,288 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/FolderJob.java | FolderJob.getJobs | public Map<String, Job> getJobs() {
//FIXME: Check for null of jobs? Can that happen?
return jobs.stream()
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.collect(Collectors.toMap(k -> k.getName(), Function.identity()));
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//FIXME: Check for null of jobs? Can that happen?
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32,289 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/FolderJob.java | FolderJob.getJob | public Job getJob(String name) {
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32,290 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/BuildWithDetails.java | BuildWithDetails.streamConsoleOutput | public void streamConsoleOutput(final BuildConsoleStreamListener listener, final int poolingInterval, final int poolingTimeout, boolean crumbFlag) throws InterruptedException, IOException {
// Calculate start and timeout
final long startTime = System.currentTimeMillis();
final long timeoutTime =... | java | public void streamConsoleOutput(final BuildConsoleStreamListener listener, final int poolingInterval, final int poolingTimeout, boolean crumbFlag) throws InterruptedException, IOException {
// Calculate start and timeout
final long startTime = System.currentTimeMillis();
final long timeoutTime =... | [
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32,291 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/BuildWithDetails.java | BuildWithDetails.getConsoleOutputText | public ConsoleLog getConsoleOutputText(int bufferOffset, boolean crumbFlag) throws IOException {
List<NameValuePair> formData = new ArrayList<>();
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String path = getUrl() + "logText/progressiveText";
HttpRespon... | java | public ConsoleLog getConsoleOutputText(int bufferOffset, boolean crumbFlag) throws IOException {
List<NameValuePair> formData = new ArrayList<>();
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32,292 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/BuildWithDetails.java | BuildWithDetails.getChangeSet | public BuildChangeSet getChangeSet() {
BuildChangeSet result;
if (changeSet != null) {
result = changeSet;
} else if (changeSets != null && !changeSets.isEmpty()) {
result = changeSets.get(0);
} else {
result = null;
}
return result;
... | java | public BuildChangeSet getChangeSet() {
BuildChangeSet result;
if (changeSet != null) {
result = changeSet;
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result = changeSets.get(0);
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result = null;
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return result;
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32,293 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/BuildWithDetails.java | BuildWithDetails.getChangeSets | public List<BuildChangeSet> getChangeSets() {
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result = changeSets;
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result = Collections.singletonList(changeSet);
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result = null;
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List<BuildChangeSet> result;
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32,294 | jenkinsci/java-client-api | jenkins-client/src/main/java/com/offbytwo/jenkins/model/Build.java | Build.Stop | public String Stop(boolean crumbFlag) throws HttpResponseException, IOException {
try {
return client.get(url + "stop");
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try {
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32,295 | Tourenathan-G5organisation/SiliCompressor | silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java | FileUtils.getExtension | public static String getExtension(String uri) {
if (uri == null) {
return null;
}
int dot = uri.lastIndexOf(".");
if (dot >= 0) {
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// No extension.
return "";
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32,296 | Tourenathan-G5organisation/SiliCompressor | silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java | FileUtils.getUri | public static Uri getUri(Context context, File file) {
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//Uri.fromFile(file);
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return null;
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32,297 | Tourenathan-G5organisation/SiliCompressor | silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java | FileUtils.getFile | public static File getFile(Context context, Uri uri) {
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} | java | public static File getFile(Context context, Uri uri) {
if (uri != null) {
String path = getPath(context, uri);
if (path != null && isLocal(path)) {
return new File(path);
}
}
return null;
} | [
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... | Convert Uri into File, if possible.
@return file A local file that the Uri was pointing to, or null if the
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@see #getPath(Context, Uri)
@author paulburke | [
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] | 546f6cd7b2a7a783e1122df46c1e237f8938fe72 | https://github.com/Tourenathan-G5organisation/SiliCompressor/blob/546f6cd7b2a7a783e1122df46c1e237f8938fe72/silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java#L342-L350 |
32,298 | Tourenathan-G5organisation/SiliCompressor | silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java | FileUtils.getReadableFileSize | public static String getReadableFileSize(int size) {
final int BYTES_IN_KILOBYTES = 1024;
final DecimalFormat dec = new DecimalFormat("###.#");
final String KILOBYTES = " KB";
final String MEGABYTES = " MB";
final String GIGABYTES = " GB";
float fileSize = 0;
Stri... | java | public static String getReadableFileSize(int size) {
final int BYTES_IN_KILOBYTES = 1024;
final DecimalFormat dec = new DecimalFormat("###.#");
final String KILOBYTES = " KB";
final String MEGABYTES = " MB";
final String GIGABYTES = " GB";
float fileSize = 0;
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... | Get the file size in a human-readable string.
@param size
@return
@author paulburke | [
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] | 546f6cd7b2a7a783e1122df46c1e237f8938fe72 | https://github.com/Tourenathan-G5organisation/SiliCompressor/blob/546f6cd7b2a7a783e1122df46c1e237f8938fe72/silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java#L359-L381 |
32,299 | Tourenathan-G5organisation/SiliCompressor | silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java | FileUtils.getThumbnail | public static Bitmap getThumbnail(Context context, File file) {
return getThumbnail(context, getUri(context, file), getMimeType(file));
} | java | public static Bitmap getThumbnail(Context context, File file) {
return getThumbnail(context, getUri(context, file), getMimeType(file));
} | [
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] | Attempt to retrieve the thumbnail of given File from the MediaStore. This
should not be called on the UI thread.
@param context
@param file
@return
@author paulburke | [
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] | 546f6cd7b2a7a783e1122df46c1e237f8938fe72 | https://github.com/Tourenathan-G5organisation/SiliCompressor/blob/546f6cd7b2a7a783e1122df46c1e237f8938fe72/silicompressor/src/main/java/com/iceteck/silicompressorr/FileUtils.java#L392-L394 |
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