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146,200
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseOneApplication.java
PhaseOneApplication.stage6
public boolean stage6(final Document doc, final ProtoNetwork pn) { beginStage(PHASE1_STAGE6_HDR, "6", NUM_PHASES); final StringBuilder bldr = new StringBuilder(); boolean stmtSuccess = false, termSuccess = false; bldr.append("Expanding statements and terms"); stageOutput(bldr.toString()); long t1 = currentTimeMillis(); boolean stmtExpand = !hasOption(NO_NS_LONG_OPT); p1.stage6Expansion(doc, pn, stmtExpand); termSuccess = true; stmtSuccess = true; long t2 = currentTimeMillis(); bldr.setLength(0); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); return stmtSuccess && termSuccess; }
java
public boolean stage6(final Document doc, final ProtoNetwork pn) { beginStage(PHASE1_STAGE6_HDR, "6", NUM_PHASES); final StringBuilder bldr = new StringBuilder(); boolean stmtSuccess = false, termSuccess = false; bldr.append("Expanding statements and terms"); stageOutput(bldr.toString()); long t1 = currentTimeMillis(); boolean stmtExpand = !hasOption(NO_NS_LONG_OPT); p1.stage6Expansion(doc, pn, stmtExpand); termSuccess = true; stmtSuccess = true; long t2 = currentTimeMillis(); bldr.setLength(0); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); return stmtSuccess && termSuccess; }
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Stage six expansion of the document. @param doc the original {@link Document document} needed as a dependency when using {@link ProtoNetworkBuilder proto network builder} @param pn the {@link ProtoNetwork proto network} to expand into
[ "Stage", "six", "expansion", "of", "the", "document", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseOneApplication.java#L569-L591
146,201
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseOneApplication.java
PhaseOneApplication.stage7
private boolean stage7(final ProtoNetwork pn, final Document doc) { beginStage(PHASE1_STAGE7_HDR, "7", NUM_PHASES); final StringBuilder bldr = new StringBuilder(); bldr.append("Saving proto-network for "); bldr.append(doc.getName()); stageOutput(bldr.toString()); long t1 = currentTimeMillis(); String dir = artifactPath.getAbsolutePath(); final String path = asPath(dir, nextUniqueFolderName()); File pnpathname = new File(path); boolean success = true; try { p1.stage7Saving(pn, pnpathname); if (withDebug()) { TextProtoNetworkExternalizer textExternalizer = new TextProtoNetworkExternalizer(); textExternalizer.writeProtoNetwork(pn, pnpathname.getAbsolutePath()); } } catch (ProtoNetworkError e) { success = false; error("failed to save proto-network"); e.printStackTrace(); } long t2 = currentTimeMillis(); bldr.setLength(0); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); return success; }
java
private boolean stage7(final ProtoNetwork pn, final Document doc) { beginStage(PHASE1_STAGE7_HDR, "7", NUM_PHASES); final StringBuilder bldr = new StringBuilder(); bldr.append("Saving proto-network for "); bldr.append(doc.getName()); stageOutput(bldr.toString()); long t1 = currentTimeMillis(); String dir = artifactPath.getAbsolutePath(); final String path = asPath(dir, nextUniqueFolderName()); File pnpathname = new File(path); boolean success = true; try { p1.stage7Saving(pn, pnpathname); if (withDebug()) { TextProtoNetworkExternalizer textExternalizer = new TextProtoNetworkExternalizer(); textExternalizer.writeProtoNetwork(pn, pnpathname.getAbsolutePath()); } } catch (ProtoNetworkError e) { success = false; error("failed to save proto-network"); e.printStackTrace(); } long t2 = currentTimeMillis(); bldr.setLength(0); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); return success; }
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Stage seven saving of proto-network. @param pn Proto-network @param doc {@link Document}, the document @return boolean true if success, false otherwise
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149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseOneApplication.java#L600-L636
146,202
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java
Flags.getClusterLexiconFiles
public static List<File> getClusterLexiconFiles(final String clusterPath) { final List<File> clusterLexicons = new ArrayList<File>(); final String[] clusterPaths = clusterPath.split(","); for (final String clusterName : clusterPaths) { clusterLexicons.add(new File(clusterName)); } return clusterLexicons; }
java
public static List<File> getClusterLexiconFiles(final String clusterPath) { final List<File> clusterLexicons = new ArrayList<File>(); final String[] clusterPaths = clusterPath.split(","); for (final String clusterName : clusterPaths) { clusterLexicons.add(new File(clusterName)); } return clusterLexicons; }
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Get a parameter in trainParams.prop file consisting of a list of clustering lexicons separated by comma "," and return a list of files, one for each lexicon. @param clusterPath the clustering parameter in the prop file @return a list of files one for each lexicon
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java#L763-L771
146,203
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java
Flags.isPOSBaselineFeatures
public static boolean isPOSBaselineFeatures(final TrainingParameters params) { final String posFeatures = getPOSBaselineFeatures(params); return !posFeatures.equalsIgnoreCase(Flags.DEFAULT_FEATURE_FLAG); }
java
public static boolean isPOSBaselineFeatures(final TrainingParameters params) { final String posFeatures = getPOSBaselineFeatures(params); return !posFeatures.equalsIgnoreCase(Flags.DEFAULT_FEATURE_FLAG); }
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Check if POS Baseline features are active. @param params the parameters @return whether the pos baseline features are activated or not
[ "Check", "if", "POS", "Baseline", "features", "are", "active", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java#L898-L901
146,204
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java
Flags.isSuperSenseFeatures
public static boolean isSuperSenseFeatures(final TrainingParameters params) { final String mfsFeatures = getSuperSenseFeatures(params); return !mfsFeatures.equalsIgnoreCase(Flags.DEFAULT_FEATURE_FLAG); }
java
public static boolean isSuperSenseFeatures(final TrainingParameters params) { final String mfsFeatures = getSuperSenseFeatures(params); return !mfsFeatures.equalsIgnoreCase(Flags.DEFAULT_FEATURE_FLAG); }
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Check if supersense tagger features are active. @param params the parameters @return whether the supersense features are activated or not
[ "Check", "if", "supersense", "tagger", "features", "are", "active", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java#L910-L913
146,205
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java
Flags.isMFSFeatures
public static boolean isMFSFeatures(final TrainingParameters params) { final String mfsFeatures = getMFSFeatures(params); return !mfsFeatures.equalsIgnoreCase(Flags.DEFAULT_FEATURE_FLAG); }
java
public static boolean isMFSFeatures(final TrainingParameters params) { final String mfsFeatures = getMFSFeatures(params); return !mfsFeatures.equalsIgnoreCase(Flags.DEFAULT_FEATURE_FLAG); }
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Check if mfs features are active. @param params the parameters @return whether the mfs features are activated or not
[ "Check", "if", "mfs", "features", "are", "active", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Flags.java#L922-L925
146,206
ops4j/org.ops4j.pax.exam1
pax-exam-container-rbc/src/main/java/org/ops4j/pax/exam/rbc/internal/RemoteBundleContextImpl.java
RemoteBundleContextImpl.getService
private <T> T getService( final Class<T> serviceType, final long timeoutInMillis ) throws NoSuchServiceException { LOG.info( "Look up service [" + serviceType.getName() + "], timeout in " + timeoutInMillis + " millis" ); final ServiceReference ref = m_bundleContext.getServiceReference( serviceType.getName() ); if( ref != null ) { final Object service = m_bundleContext.getService( ref ); if( service == null ) { throw new NoSuchServiceException( serviceType ); } return (T) service; } else { throw new NoSuchServiceException( serviceType ); } }
java
private <T> T getService( final Class<T> serviceType, final long timeoutInMillis ) throws NoSuchServiceException { LOG.info( "Look up service [" + serviceType.getName() + "], timeout in " + timeoutInMillis + " millis" ); final ServiceReference ref = m_bundleContext.getServiceReference( serviceType.getName() ); if( ref != null ) { final Object service = m_bundleContext.getService( ref ); if( service == null ) { throw new NoSuchServiceException( serviceType ); } return (T) service; } else { throw new NoSuchServiceException( serviceType ); } }
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Lookup a service in the service registry. @param serviceType service class @param timeoutInMillis number of milliseconds to wait for service before failing TODO timeout is not used! @return a service published under the required service type @throws NoSuchServiceException - If service cannot be found in the service registry
[ "Lookup", "a", "service", "in", "the", "service", "registry", "." ]
7c8742208117ff91bd24bcd3a185d2d019f7000f
https://github.com/ops4j/org.ops4j.pax.exam1/blob/7c8742208117ff91bd24bcd3a185d2d019f7000f/pax-exam-container-rbc/src/main/java/org/ops4j/pax/exam/rbc/internal/RemoteBundleContextImpl.java#L213-L232
146,207
ops4j/org.ops4j.pax.exam1
pax-exam-container-rbc/src/main/java/org/ops4j/pax/exam/rbc/internal/RemoteBundleContextImpl.java
RemoteBundleContextImpl.startBundle
private void startBundle( final Bundle bundle ) throws BundleException { // Don't start if bundle already active int bundleState = bundle.getState(); if( bundleState == Bundle.ACTIVE ) { return; } // Don't start if bundle is a fragment bundle Dictionary bundleHeaders = bundle.getHeaders(); if( bundleHeaders.get( Constants.FRAGMENT_HOST ) != null ) { return; } // Start bundle bundle.start(); bundleState = bundle.getState(); if( bundleState != Bundle.ACTIVE ) { long bundleId = bundle.getBundleId(); String bundleName = bundle.getSymbolicName(); String bundleStateStr = bundleStateToString( bundleState ); throw new BundleException( "Bundle (" + bundleId + ", " + bundleName + ") not started (still " + bundleStateStr + ")" ); } }
java
private void startBundle( final Bundle bundle ) throws BundleException { // Don't start if bundle already active int bundleState = bundle.getState(); if( bundleState == Bundle.ACTIVE ) { return; } // Don't start if bundle is a fragment bundle Dictionary bundleHeaders = bundle.getHeaders(); if( bundleHeaders.get( Constants.FRAGMENT_HOST ) != null ) { return; } // Start bundle bundle.start(); bundleState = bundle.getState(); if( bundleState != Bundle.ACTIVE ) { long bundleId = bundle.getBundleId(); String bundleName = bundle.getSymbolicName(); String bundleStateStr = bundleStateToString( bundleState ); throw new BundleException( "Bundle (" + bundleId + ", " + bundleName + ") not started (still " + bundleStateStr + ")" ); } }
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Starts a bundle. @param bundle bundle to be started @throws BundleException - If bundle cannot be started
[ "Starts", "a", "bundle", "." ]
7c8742208117ff91bd24bcd3a185d2d019f7000f
https://github.com/ops4j/org.ops4j.pax.exam1/blob/7c8742208117ff91bd24bcd3a185d2d019f7000f/pax-exam-container-rbc/src/main/java/org/ops4j/pax/exam/rbc/internal/RemoteBundleContextImpl.java#L241-L271
146,208
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java
Span.trim
public Span trim(final CharSequence text) { int newStartOffset = getStart(); for (int i = getStart(); i < getEnd() && StringUtil.isWhitespace(text.charAt(i)); i++) { newStartOffset++; } int newEndOffset = getEnd(); for (int i = getEnd(); i > getStart() && StringUtil.isWhitespace(text.charAt(i - 1)); i--) { newEndOffset--; } if (newStartOffset == getStart() && newEndOffset == getEnd()) { return this; } else if (newStartOffset > newEndOffset) { return new Span(getStart(), getStart(), getType()); } else { return new Span(newStartOffset, newEndOffset, getType()); } }
java
public Span trim(final CharSequence text) { int newStartOffset = getStart(); for (int i = getStart(); i < getEnd() && StringUtil.isWhitespace(text.charAt(i)); i++) { newStartOffset++; } int newEndOffset = getEnd(); for (int i = getEnd(); i > getStart() && StringUtil.isWhitespace(text.charAt(i - 1)); i--) { newEndOffset--; } if (newStartOffset == getStart() && newEndOffset == getEnd()) { return this; } else if (newStartOffset > newEndOffset) { return new Span(getStart(), getStart(), getType()); } else { return new Span(newStartOffset, newEndOffset, getType()); } }
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Return a copy of this span with leading and trailing white spaces removed. @param text the text @return the trimmed span or the same object if already trimmed
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java#L269-L291
146,209
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java
Span.getTypesFromSpans
public static String[] getTypesFromSpans(final Span[] spans, final String[] tokens) { final List<String> tagsList = new ArrayList<String>(); for (final Span span : spans) { tagsList.add(span.getType()); } return tagsList.toArray(new String[tagsList.size()]); }
java
public static String[] getTypesFromSpans(final Span[] spans, final String[] tokens) { final List<String> tagsList = new ArrayList<String>(); for (final Span span : spans) { tagsList.add(span.getType()); } return tagsList.toArray(new String[tagsList.size()]); }
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Get an array of Spans and their associated tokens and obtains an array of Strings containing the type for each Span. @param spans the array of Spans @param tokens the array of tokens @return an array of string with the types
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java#L441-L448
146,210
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java
Span.postProcessDuplicatedSpans
public static final void postProcessDuplicatedSpans(final List<Span> preList, final Span[] postList) { final List<Span> duplicatedSpans = new ArrayList<Span>(); for (final Span span1 : preList) { for (final Span span2 : postList) { if (span1.contains(span2)) { duplicatedSpans.add(span1); } else if (span2.contains(span1)) { duplicatedSpans.add(span1); } } } preList.removeAll(duplicatedSpans); }
java
public static final void postProcessDuplicatedSpans(final List<Span> preList, final Span[] postList) { final List<Span> duplicatedSpans = new ArrayList<Span>(); for (final Span span1 : preList) { for (final Span span2 : postList) { if (span1.contains(span2)) { duplicatedSpans.add(span1); } else if (span2.contains(span1)) { duplicatedSpans.add(span1); } } } preList.removeAll(duplicatedSpans); }
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Removes spans from the preList if the span is contained in the postList. @param preList the list of spans to be post-processed @param postList the list of spans to do the post-processing
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java#L458-L471
146,211
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java
Span.concatenateSpans
public static final void concatenateSpans(final List<Span> allSpans, final Span[] neSpans) { for (final Span span : neSpans) { allSpans.add(span); } }
java
public static final void concatenateSpans(final List<Span> allSpans, final Span[] neSpans) { for (final Span span : neSpans) { allSpans.add(span); } }
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Concatenates two span lists adding the spans of the second parameter to the list in first parameter. @param allSpans the spans to which the other spans are added @param neSpans the spans to be added to allSpans
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/utils/Span.java#L482-L487
146,212
alb-i986/selenium-tinafw
src/main/java/me/alb_i986/selenium/tinafw/tasks/CompositeWebTask.java
CompositeWebTask.run
@Override public WebPage run(WebPage initialPage) { if(getUser() == null) throw new IllegalStateException("the user set is null"); WebPage currentPage = initialPage; for(WebTask task : this) { logger.info("BEGIN subtask " + task.getClass().getSimpleName()); // before running the subtask, set the user task.setUser(getUser()); currentPage = task.run(currentPage); logger.info("END subtask " + task.getClass().getSimpleName()); } return currentPage; }
java
@Override public WebPage run(WebPage initialPage) { if(getUser() == null) throw new IllegalStateException("the user set is null"); WebPage currentPage = initialPage; for(WebTask task : this) { logger.info("BEGIN subtask " + task.getClass().getSimpleName()); // before running the subtask, set the user task.setUser(getUser()); currentPage = task.run(currentPage); logger.info("END subtask " + task.getClass().getSimpleName()); } return currentPage; }
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Runs each subtask in order, and finally return the page that the last task was visiting. Each subtask will run with the same user as the composite. @throws IllegalStateException if the user set in this composite is null
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91c66720cda9f69751f96c58c0a0624b2222186e
https://github.com/alb-i986/selenium-tinafw/blob/91c66720cda9f69751f96c58c0a0624b2222186e/src/main/java/me/alb_i986/selenium/tinafw/tasks/CompositeWebTask.java#L55-L68
146,213
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/document/DocumentClassifierME.java
DocumentClassifierME.scoreMap
@Override public Map<String, Double> scoreMap(String[] text) { Map<String, Double> probDist = new HashMap<>(); double[] categorize = classifyProb(text); int catSize = getNumberOfLabels(); for (int i = 0; i < catSize; i++) { String category = getLabel(i); probDist.put(category, categorize[getIndex(category)]); } return probDist; }
java
@Override public Map<String, Double> scoreMap(String[] text) { Map<String, Double> probDist = new HashMap<>(); double[] categorize = classifyProb(text); int catSize = getNumberOfLabels(); for (int i = 0; i < catSize; i++) { String category = getLabel(i); probDist.put(category, categorize[getIndex(category)]); } return probDist; }
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Returns a map in which the key is the label name and the value is the score. @param text the input text to classify @return the score map
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/document/DocumentClassifierME.java#L84-L95
146,214
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/document/DocumentClassifierME.java
DocumentClassifierME.sortedScoreMap
@Override public SortedMap<Double, Set<String>> sortedScoreMap(String[] text) { SortedMap<Double, Set<String>> descendingMap = new TreeMap<>(); double[] categorize = classifyProb(text); int catSize = getNumberOfLabels(); for (int i = 0; i < catSize; i++) { String category = getLabel(i); double score = categorize[getIndex(category)]; if (descendingMap.containsKey(score)) { descendingMap.get(score).add(category); } else { Set<String> newset = new HashSet<>(); newset.add(category); descendingMap.put(score, newset); } } return descendingMap; }
java
@Override public SortedMap<Double, Set<String>> sortedScoreMap(String[] text) { SortedMap<Double, Set<String>> descendingMap = new TreeMap<>(); double[] categorize = classifyProb(text); int catSize = getNumberOfLabels(); for (int i = 0; i < catSize; i++) { String category = getLabel(i); double score = categorize[getIndex(category)]; if (descendingMap.containsKey(score)) { descendingMap.get(score).add(category); } else { Set<String> newset = new HashSet<>(); newset.add(category); descendingMap.put(score, newset); } } return descendingMap; }
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Returns a map with the score as a key in ascending order. The value is a Set of categories with the score. Many labels can have the same score, hence the Set as value. @param text the input text to classify @return the sorted score map
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/document/DocumentClassifierME.java#L105-L122
146,215
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/parse/ShiftReduceParser.java
ShiftReduceParser.advanceTags
protected Parse[] advanceTags(final Parse p) { final Parse[] children = p.getChildren(); final String[] words = new String[children.length]; final double[] probs = new double[words.length]; for (int i = 0, il = children.length; i < il; i++) { words[i] = children[i].getCoveredText(); } final Sequence[] ts = this.tagger.topKSequences(words); if (ts.length == 0) { System.err.println("no tag sequence"); } final Parse[] newParses = new Parse[ts.length]; for (int i = 0; i < ts.length; i++) { final String[] tags = ts[i].getOutcomes() .toArray(new String[words.length]); ts[i].getProbs(probs); newParses[i] = (Parse) p.clone(); // copies top level if (this.createDerivationString) { newParses[i].getDerivation().append(i).append("."); } for (int j = 0; j < words.length; j++) { final Parse word = children[j]; // System.err.println("inserting tag "+tags[j]); final double prob = probs[j]; newParses[i].insert(new Parse(word.getText(), word.getSpan(), tags[j].replaceAll("-" + BioCodec.START, ""), prob, j)); newParses[i].addProb(Math.log(prob)); // newParses[i].show(); } } return newParses; }
java
protected Parse[] advanceTags(final Parse p) { final Parse[] children = p.getChildren(); final String[] words = new String[children.length]; final double[] probs = new double[words.length]; for (int i = 0, il = children.length; i < il; i++) { words[i] = children[i].getCoveredText(); } final Sequence[] ts = this.tagger.topKSequences(words); if (ts.length == 0) { System.err.println("no tag sequence"); } final Parse[] newParses = new Parse[ts.length]; for (int i = 0; i < ts.length; i++) { final String[] tags = ts[i].getOutcomes() .toArray(new String[words.length]); ts[i].getProbs(probs); newParses[i] = (Parse) p.clone(); // copies top level if (this.createDerivationString) { newParses[i].getDerivation().append(i).append("."); } for (int j = 0; j < words.length; j++) { final Parse word = children[j]; // System.err.println("inserting tag "+tags[j]); final double prob = probs[j]; newParses[i].insert(new Parse(word.getText(), word.getSpan(), tags[j].replaceAll("-" + BioCodec.START, ""), prob, j)); newParses[i].addProb(Math.log(prob)); // newParses[i].show(); } } return newParses; }
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Advances the parse by assigning it POS tags and returns multiple tag sequences. @param p The parse to be tagged. @return Parses with different POS-tag sequence assignments.
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/parse/ShiftReduceParser.java#L581-L612
146,216
ardoq/ardoq-java-client
src/main/java/com/ardoq/adapter/JsonUtils.java
JsonUtils.removeReservedNullVaules
public static void removeReservedNullVaules(JsonObject jsonObject) { Set<Map.Entry<String, JsonElement>> entries = jsonObject.entrySet(); for (Map.Entry<String, JsonElement> entry : entries) { if (entry.getValue().isJsonNull()) { jsonObject.remove(entry.getKey()); } } }
java
public static void removeReservedNullVaules(JsonObject jsonObject) { Set<Map.Entry<String, JsonElement>> entries = jsonObject.entrySet(); for (Map.Entry<String, JsonElement> entry : entries) { if (entry.getValue().isJsonNull()) { jsonObject.remove(entry.getKey()); } } }
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Removes keys from json object if they have null values. Won't touch fields as users may want to explicitly set them to null @param jsonObject
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03731c3df864d850ef41b252364a104376dde983
https://github.com/ardoq/ardoq-java-client/blob/03731c3df864d850ef41b252364a104376dde983/src/main/java/com/ardoq/adapter/JsonUtils.java#L16-L23
146,217
ardoq/ardoq-java-client
src/main/java/com/ardoq/service/SimpleModelService.java
SimpleModelService.findOrCreateTemplate
public Model findOrCreateTemplate(String name, InputStream modelJson) throws IOException { try { Model m = getTemplateByName(name); return m; } catch (IllegalArgumentException ignore) { } String modelStr = IOUtils.toString(modelJson, "UTF-8"); return modelService.createModel(new TypedString(modelStr)); }
java
public Model findOrCreateTemplate(String name, InputStream modelJson) throws IOException { try { Model m = getTemplateByName(name); return m; } catch (IllegalArgumentException ignore) { } String modelStr = IOUtils.toString(modelJson, "UTF-8"); return modelService.createModel(new TypedString(modelStr)); }
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Tries to lookup the model by name, and returns it if it's found. If not, it is created from the provided JSON input stream. @param name @param modelJson @return model @throws IOException
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03731c3df864d850ef41b252364a104376dde983
https://github.com/ardoq/ardoq-java-client/blob/03731c3df864d850ef41b252364a104376dde983/src/main/java/com/ardoq/service/SimpleModelService.java#L91-L100
146,218
astrapi69/jaulp-wicket
jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/sign/up/SignupPanel.java
SignupPanel.newSigninPanel
protected SigninPanel<T> newSigninPanel(final String id, final IModel<T> model) { return new SigninPanel<>(id, model); }
java
protected SigninPanel<T> newSigninPanel(final String id, final IModel<T> model) { return new SigninPanel<>(id, model); }
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Factory method for creating the SigninPanel that contains the TextField for the email and password. This method is invoked in the constructor from the derived classes and can be overridden so users can provide their own version of a Component that contains the TextField for the email and password. @param id the id @param model the model @return the Component
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85d74368d00abd9bb97659b5794e38c0f8a013d4
https://github.com/astrapi69/jaulp-wicket/blob/85d74368d00abd9bb97659b5794e38c0f8a013d4/jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/sign/up/SignupPanel.java#L124-L127
146,219
astrapi69/jaulp-wicket
jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/sign/up/SignupPanel.java
SignupPanel.newUsernameTextField
protected Component newUsernameTextField(final String id, final IModel<T> model) { final IModel<String> labelModel = ResourceModelFactory .newResourceModel("global.username.label", this); final IModel<String> placeholderModel = ResourceModelFactory .newResourceModel("global.enter.your.username.label", this); final LabeledTextFieldPanel<String, T> nameTextField = new LabeledTextFieldPanel<String, T>( id, model, labelModel) { private static final long serialVersionUID = 1L; @Override @SuppressWarnings({ "rawtypes", "unchecked" }) protected TextField newTextField(final String id, final IModel<T> modelSuper) { final TextField<String> textField = new TextField<String>(id, new PropertyModel<>(model, "username")); textField.setOutputMarkupId(true); textField.setRequired(true); if (placeholderModel != null) { textField.add(new AttributeAppender("placeholder", placeholderModel)); } return textField; } }; return nameTextField; }
java
protected Component newUsernameTextField(final String id, final IModel<T> model) { final IModel<String> labelModel = ResourceModelFactory .newResourceModel("global.username.label", this); final IModel<String> placeholderModel = ResourceModelFactory .newResourceModel("global.enter.your.username.label", this); final LabeledTextFieldPanel<String, T> nameTextField = new LabeledTextFieldPanel<String, T>( id, model, labelModel) { private static final long serialVersionUID = 1L; @Override @SuppressWarnings({ "rawtypes", "unchecked" }) protected TextField newTextField(final String id, final IModel<T> modelSuper) { final TextField<String> textField = new TextField<String>(id, new PropertyModel<>(model, "username")); textField.setOutputMarkupId(true); textField.setRequired(true); if (placeholderModel != null) { textField.add(new AttributeAppender("placeholder", placeholderModel)); } return textField; } }; return nameTextField; }
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Factory method for creating the TextField for the username. This method is invoked in the constructor from the derived classes and can be overridden so users can provide their own version of a TextField for the username. @param id the id @param model the model @return the text field
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85d74368d00abd9bb97659b5794e38c0f8a013d4
https://github.com/astrapi69/jaulp-wicket/blob/85d74368d00abd9bb97659b5794e38c0f8a013d4/jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/sign/up/SignupPanel.java#L140-L168
146,220
nohana/Amalgam
amalgam/src/main/java/com/amalgam/app/ActivityManagerUtils.java
ActivityManagerUtils.getPackageNameFromPid
public static String getPackageNameFromPid(Context context, int pid) { ActivityManager am = (ActivityManager) context.getSystemService(Context.ACTIVITY_SERVICE); List<RunningAppProcessInfo> processes = am.getRunningAppProcesses(); for (RunningAppProcessInfo info : processes) { if (info.pid == pid) { String[] packages = info.pkgList; if (packages.length > 0) { return packages[0]; } break; } } return null; }
java
public static String getPackageNameFromPid(Context context, int pid) { ActivityManager am = (ActivityManager) context.getSystemService(Context.ACTIVITY_SERVICE); List<RunningAppProcessInfo> processes = am.getRunningAppProcesses(); for (RunningAppProcessInfo info : processes) { if (info.pid == pid) { String[] packages = info.pkgList; if (packages.length > 0) { return packages[0]; } break; } } return null; }
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Get package name of the process id. @param context the context. @param pid the process id. @return the package name for the process id. {@code null} if no process found.
[ "Get", "package", "name", "of", "the", "process", "id", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/app/ActivityManagerUtils.java#L105-L118
146,221
geomajas/geomajas-project-client-gwt2
impl/src/main/java/org/geomajas/gwt2/client/map/feature/JsonFeatureFactory.java
JsonFeatureFactory.createCollection
public FeatureCollection createCollection(JSONObject jsonObject, FeaturesSupported layer) { FeatureCollection dto = new FeatureCollection(layer); String type = JsonService.getStringValue(jsonObject, "type"); if ("FeatureCollection".equals(type)) { JSONArray features = JsonService.getChildArray(jsonObject, "features"); for (int i = 0; i < features.size(); i++) { dto.getFeatures().add(createFeature((JSONObject) features.get(i), layer)); } } else if ("Feature".equals(type)) { dto.getFeatures().add(createFeature(jsonObject, layer)); } return dto; }
java
public FeatureCollection createCollection(JSONObject jsonObject, FeaturesSupported layer) { FeatureCollection dto = new FeatureCollection(layer); String type = JsonService.getStringValue(jsonObject, "type"); if ("FeatureCollection".equals(type)) { JSONArray features = JsonService.getChildArray(jsonObject, "features"); for (int i = 0; i < features.size(); i++) { dto.getFeatures().add(createFeature((JSONObject) features.get(i), layer)); } } else if ("Feature".equals(type)) { dto.getFeatures().add(createFeature(jsonObject, layer)); } return dto; }
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Create a feature collection for this layer. @param jsonObject @param layer the layer (optional) @return the feature
[ "Create", "a", "feature", "collection", "for", "this", "layer", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/impl/src/main/java/org/geomajas/gwt2/client/map/feature/JsonFeatureFactory.java#L44-L56
146,222
OpenBEL/openbel-framework
org.openbel.framework.core/src/main/java/org/openbel/framework/core/equivalence/DefaultParameterEquivalencer.java
DefaultParameterEquivalencer.doFindEquivalence
private String doFindEquivalence(final String sourceNamespace, final String destinationNamespace, final String sourceValue) { JDBMEquivalenceLookup sourceLookup = openEquivalences.get(sourceNamespace); if (sourceLookup == null) { return null; } final SkinnyUUID sourceUUID = sourceLookup.lookup(sourceValue); if (sourceUUID == null) { return null; } return doFindEquivalence(destinationNamespace, sourceUUID); }
java
private String doFindEquivalence(final String sourceNamespace, final String destinationNamespace, final String sourceValue) { JDBMEquivalenceLookup sourceLookup = openEquivalences.get(sourceNamespace); if (sourceLookup == null) { return null; } final SkinnyUUID sourceUUID = sourceLookup.lookup(sourceValue); if (sourceUUID == null) { return null; } return doFindEquivalence(destinationNamespace, sourceUUID); }
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Obtain the destinationNamespace equivalent value of sourceValue in sourceNamespace @param sourceNamespace resourceLocation of source namespace @param destinationNamespace resourceLocation of destination namespace @param sourceValue @return equivalent value, may be null.
[ "Obtain", "the", "destinationNamespace", "equivalent", "value", "of", "sourceValue", "in", "sourceNamespace" ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.core/src/main/java/org/openbel/framework/core/equivalence/DefaultParameterEquivalencer.java#L267-L280
146,223
OpenBEL/openbel-framework
org.openbel.framework.core/src/main/java/org/openbel/framework/core/equivalence/DefaultParameterEquivalencer.java
DefaultParameterEquivalencer.doFindEquivalence
private String doFindEquivalence(final String destinationNamespace, final SkinnyUUID sourceUUID) { JDBMEquivalenceLookup destinationLookup = openEquivalences .get(destinationNamespace); return destinationLookup.reverseLookup(sourceUUID); }
java
private String doFindEquivalence(final String destinationNamespace, final SkinnyUUID sourceUUID) { JDBMEquivalenceLookup destinationLookup = openEquivalences .get(destinationNamespace); return destinationLookup.reverseLookup(sourceUUID); }
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Obtain the destinationNamespace equivalent value of the sourceUUID. @param destinationNamespace resourceLocation of destination namespace @param sourceUUID @return equivalent value, may be null
[ "Obtain", "the", "destinationNamespace", "equivalent", "value", "of", "the", "sourceUUID", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.core/src/main/java/org/openbel/framework/core/equivalence/DefaultParameterEquivalencer.java#L288-L294
146,224
ihaolin/session
session-api/src/main/java/me/hao0/session/core/SessionFilter.java
SessionFilter.initAttrs
private void initAttrs(FilterConfig config){ String param = config.getInitParameter(SESSION_COOKIE_NAME); sessionCookieName = Strings.isNullOrEmpty(param) ? DEFAULT_SESSION_COOKIE_NAME : param; param = config.getInitParameter(MAX_INACTIVE_INTERVAL); maxInactiveInterval = Strings.isNullOrEmpty(param) ? DEFAULT_MAX_INACTIVE_INTERVAL : Integer.parseInt(param); cookieDomain = config.getInitParameter(COOKIE_DOMAIN); param = config.getInitParameter(COOKIE_CONTEXT_PATH); cookieContextPath = Strings.isNullOrEmpty(param) ? DEFAULT_COOKIE_CONTEXT_PATH : param; param = config.getInitParameter(COOKIE_MAX_AGE); cookieMaxAge = Strings.isNullOrEmpty(param) ? DEFAULT_COOKIE_MAX_AGE : Integer.parseInt(param); log.info("SessionFilter (sessionCookieName={},maxInactiveInterval={},cookieDomain={})", sessionCookieName, maxInactiveInterval, cookieDomain); }
java
private void initAttrs(FilterConfig config){ String param = config.getInitParameter(SESSION_COOKIE_NAME); sessionCookieName = Strings.isNullOrEmpty(param) ? DEFAULT_SESSION_COOKIE_NAME : param; param = config.getInitParameter(MAX_INACTIVE_INTERVAL); maxInactiveInterval = Strings.isNullOrEmpty(param) ? DEFAULT_MAX_INACTIVE_INTERVAL : Integer.parseInt(param); cookieDomain = config.getInitParameter(COOKIE_DOMAIN); param = config.getInitParameter(COOKIE_CONTEXT_PATH); cookieContextPath = Strings.isNullOrEmpty(param) ? DEFAULT_COOKIE_CONTEXT_PATH : param; param = config.getInitParameter(COOKIE_MAX_AGE); cookieMaxAge = Strings.isNullOrEmpty(param) ? DEFAULT_COOKIE_MAX_AGE : Integer.parseInt(param); log.info("SessionFilter (sessionCookieName={},maxInactiveInterval={},cookieDomain={})", sessionCookieName, maxInactiveInterval, cookieDomain); }
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init basic attribute @param config the filter config
[ "init", "basic", "attribute" ]
322c3a9f47b305a39345135fa8163dd7e065b4f8
https://github.com/ihaolin/session/blob/322c3a9f47b305a39345135fa8163dd7e065b4f8/session-api/src/main/java/me/hao0/session/core/SessionFilter.java#L112-L129
146,225
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/pos/CliticSplitter.java
CliticSplitter.tagClitics
public List<String> tagClitics(String word, String posTag, String lemma, MorfologikLemmatizer lemmatizer) throws IOException { List<String> newCliticElems = new ArrayList<String>(); Clitic match = cliticMatcher(word, posTag); if (match != null) { addCliticComponents(word, posTag, lemmatizer, match, newCliticElems); } return newCliticElems; }
java
public List<String> tagClitics(String word, String posTag, String lemma, MorfologikLemmatizer lemmatizer) throws IOException { List<String> newCliticElems = new ArrayList<String>(); Clitic match = cliticMatcher(word, posTag); if (match != null) { addCliticComponents(word, posTag, lemmatizer, match, newCliticElems); } return newCliticElems; }
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Takes word, posTag and lemma as input and finds if any clitic pronouns are in verbs. @param word the original word possibly containing clitic pronoun @param posTag the postag @param lemma the lemma @param lemmatizer the lemmatizer @return the new pos and lemma after clitic splitting @throws IOException if io problems
[ "Takes", "word", "posTag", "and", "lemma", "as", "input", "and", "finds", "if", "any", "clitic", "pronouns", "are", "in", "verbs", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/pos/CliticSplitter.java#L59-L67
146,226
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.failIndex
private void failIndex(PhaseThreeOptions phasecfg, String errorMessage) { stageError(errorMessage); final StringBuilder bldr = new StringBuilder(); bldr.append("Could not find resource index file."); bldr.append("Expansion of protein families, named complexes, "); bldr.append("gene scaffolding, and orthology will not occur."); stageError(bldr.toString()); ResourceIndex.INSTANCE.loadIndex(); phasecfg.setInjectProteinFamilies(false); phasecfg.setInjectNamedComplexes(false); phasecfg.setInjectGeneScaffolding(false); phasecfg.setInjectOrthology(false); }
java
private void failIndex(PhaseThreeOptions phasecfg, String errorMessage) { stageError(errorMessage); final StringBuilder bldr = new StringBuilder(); bldr.append("Could not find resource index file."); bldr.append("Expansion of protein families, named complexes, "); bldr.append("gene scaffolding, and orthology will not occur."); stageError(bldr.toString()); ResourceIndex.INSTANCE.loadIndex(); phasecfg.setInjectProteinFamilies(false); phasecfg.setInjectNamedComplexes(false); phasecfg.setInjectGeneScaffolding(false); phasecfg.setInjectOrthology(false); }
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Logic to recover from a missing resource index. @param phasecfg @param errorMessage
[ "Logic", "to", "recover", "from", "a", "missing", "resource", "index", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L295-L307
146,227
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.processNetwork
private void processNetwork(final ProtoNetwork pn) { // Inject protein families ProtoNetwork pfamMerged = stage1(pn); // Inject named complexes ProtoNetwork ncMerged = stage2(pfamMerged); // Inject gene scaffolding ProtoNetwork geneMerged = stage3(ncMerged); // Inject homology knowledge ProtoNetwork orthoMerged = stage4(geneMerged); // Equivalence the network ProtoNetwork equived = stage5(orthoMerged); stage6(equived); }
java
private void processNetwork(final ProtoNetwork pn) { // Inject protein families ProtoNetwork pfamMerged = stage1(pn); // Inject named complexes ProtoNetwork ncMerged = stage2(pfamMerged); // Inject gene scaffolding ProtoNetwork geneMerged = stage3(ncMerged); // Inject homology knowledge ProtoNetwork orthoMerged = stage4(geneMerged); // Equivalence the network ProtoNetwork equived = stage5(orthoMerged); stage6(equived); }
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Runs the phase three stages over the input proto-network. @param pn Proto-network input by user
[ "Runs", "the", "phase", "three", "stages", "over", "the", "input", "proto", "-", "network", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L371-L383
146,228
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.failProteinFamilies
private ProtoNetwork failProteinFamilies(final ProtoNetwork pn, final StringBuilder bldr, String pfLocation, String errorMessage) { bldr.append("PROTEIN FAMILY RESOLUTION FAILURE in "); bldr.append(pfLocation); bldr.append("\n\treason: "); bldr.append(errorMessage); stageWarning(bldr.toString()); // could not resolve protein family resource so return original // proto network. return pn; }
java
private ProtoNetwork failProteinFamilies(final ProtoNetwork pn, final StringBuilder bldr, String pfLocation, String errorMessage) { bldr.append("PROTEIN FAMILY RESOLUTION FAILURE in "); bldr.append(pfLocation); bldr.append("\n\treason: "); bldr.append(errorMessage); stageWarning(bldr.toString()); // could not resolve protein family resource so return original // proto network. return pn; }
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Logic to recover from a failed protein family document. @param pn @param bldr @param pfLocation @param e @return
[ "Logic", "to", "recover", "from", "a", "failed", "protein", "family", "document", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L595-L606
146,229
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.failNamedComplexes
private ProtoNetwork failNamedComplexes(final ProtoNetwork pn, final StringBuilder bldr, String ncLocation, String errorMessage) { bldr.append("NAMED COMPLEXES RESOLUTION FAILURE in "); bldr.append(ncLocation); bldr.append("\n\treason: "); bldr.append(errorMessage); stageWarning(bldr.toString()); // could not resolve named complexes resource so return original // proto network. return pn; }
java
private ProtoNetwork failNamedComplexes(final ProtoNetwork pn, final StringBuilder bldr, String ncLocation, String errorMessage) { bldr.append("NAMED COMPLEXES RESOLUTION FAILURE in "); bldr.append(ncLocation); bldr.append("\n\treason: "); bldr.append(errorMessage); stageWarning(bldr.toString()); // could not resolve named complexes resource so return original // proto network. return pn; }
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Logic to recover from a failure to resolve a named complexes resource. @param pn @param bldr @param ncLocation @param errorMessage @return
[ "Logic", "to", "recover", "from", "a", "failure", "to", "resolve", "a", "named", "complexes", "resource", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L790-L801
146,230
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.failGeneScaffolding
private ProtoNetwork failGeneScaffolding(final ProtoNetwork pn, final StringBuilder bldr, String gsLocation, String errorMessage) { bldr.append("GENE SCAFFOLDING RESOURCE RESOLUTION FAILURE in "); bldr.append(gsLocation); bldr.append("\n\treason: "); bldr.append(errorMessage); stageWarning(bldr.toString()); // could not resolve gene scaffolding resource so return original // proto network. return pn; }
java
private ProtoNetwork failGeneScaffolding(final ProtoNetwork pn, final StringBuilder bldr, String gsLocation, String errorMessage) { bldr.append("GENE SCAFFOLDING RESOURCE RESOLUTION FAILURE in "); bldr.append(gsLocation); bldr.append("\n\treason: "); bldr.append(errorMessage); stageWarning(bldr.toString()); // could not resolve gene scaffolding resource so return original // proto network. return pn; }
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Logic to recover from a failure to resolve the gene scaffolding resource. @param pn @param bldr @param gsLocation @param errorMessage @return
[ "Logic", "to", "recover", "from", "a", "failure", "to", "resolve", "the", "gene", "scaffolding", "resource", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L987-L998
146,231
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.stage4
private ProtoNetwork stage4(final ProtoNetwork pn) { beginStage(PHASE3_STAGE4_HDR, "4", NUM_PHASES); if (!getPhaseConfiguration().getInjectOrthology()) { final StringBuilder bldr = new StringBuilder(); bldr.append(ORTHO_INJECTION_DISABLED); markEndStage(bldr); stageOutput(bldr.toString()); return pn; } // create output directory for orthologized proto network artifactPath = createDirectoryArtifact(outputDirectory, DIR_ARTIFACT); final Index index = ResourceIndex.INSTANCE.getIndex(); final Set<ResourceLocation> resources = index.getOrthologyResources(); if (noItems(resources)) { final StringBuilder bldr = new StringBuilder(); bldr.append("No orthology documents included."); markEndStage(bldr); stageOutput(bldr.toString()); return pn; } // equivalence network first, before pruning Set<EquivalenceDataIndex> equivs; try { equivs = p2.stage2LoadNamespaceEquivalences(); } catch (EquivalenceMapResolutionFailure e) { stageError(e.getUserFacingMessage()); equivs = emptySet(); } try { p2.stage3EquivalenceParameters(pn, equivs); } catch (IOException e) { } final Iterator<ResourceLocation> it = resources.iterator(); final ResourceLocation first = it.next(); final ProtoNetwork orthoMerge = pruneResource(pn, first); while (it.hasNext()) { final ResourceLocation resource = it.next(); final ProtoNetwork opn = pruneResource(pn, resource); try { p3.merge(orthoMerge, opn); } catch (ProtoNetworkError e) { e.printStackTrace(); } } try { runPhaseThree(orthoMerge); } catch (ProtoNetworkError e) { stageError(e.getUserFacingMessage()); bail(ExitCode.GENERAL_FAILURE); } try { p3.merge(pn, orthoMerge); } catch (ProtoNetworkError e) { stageError(e.getUserFacingMessage()); bail(ExitCode.GENERAL_FAILURE); } return pn; }
java
private ProtoNetwork stage4(final ProtoNetwork pn) { beginStage(PHASE3_STAGE4_HDR, "4", NUM_PHASES); if (!getPhaseConfiguration().getInjectOrthology()) { final StringBuilder bldr = new StringBuilder(); bldr.append(ORTHO_INJECTION_DISABLED); markEndStage(bldr); stageOutput(bldr.toString()); return pn; } // create output directory for orthologized proto network artifactPath = createDirectoryArtifact(outputDirectory, DIR_ARTIFACT); final Index index = ResourceIndex.INSTANCE.getIndex(); final Set<ResourceLocation> resources = index.getOrthologyResources(); if (noItems(resources)) { final StringBuilder bldr = new StringBuilder(); bldr.append("No orthology documents included."); markEndStage(bldr); stageOutput(bldr.toString()); return pn; } // equivalence network first, before pruning Set<EquivalenceDataIndex> equivs; try { equivs = p2.stage2LoadNamespaceEquivalences(); } catch (EquivalenceMapResolutionFailure e) { stageError(e.getUserFacingMessage()); equivs = emptySet(); } try { p2.stage3EquivalenceParameters(pn, equivs); } catch (IOException e) { } final Iterator<ResourceLocation> it = resources.iterator(); final ResourceLocation first = it.next(); final ProtoNetwork orthoMerge = pruneResource(pn, first); while (it.hasNext()) { final ResourceLocation resource = it.next(); final ProtoNetwork opn = pruneResource(pn, resource); try { p3.merge(orthoMerge, opn); } catch (ProtoNetworkError e) { e.printStackTrace(); } } try { runPhaseThree(orthoMerge); } catch (ProtoNetworkError e) { stageError(e.getUserFacingMessage()); bail(ExitCode.GENERAL_FAILURE); } try { p3.merge(pn, orthoMerge); } catch (ProtoNetworkError e) { stageError(e.getUserFacingMessage()); bail(ExitCode.GENERAL_FAILURE); } return pn; }
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Runs stage four injecting of homology knowledge. @param pn {@link ProtoNetwork} @return the {@link ProtoNetwork} with homology knowledge injected
[ "Runs", "stage", "four", "injecting", "of", "homology", "knowledge", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L1006-L1074
146,232
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.stage5
private ProtoNetwork stage5(ProtoNetwork pn) { beginStage(PHASE3_STAGE5_HDR, "5", NUM_PHASES); final StringBuilder bldr = new StringBuilder(); if (!withGeneScaffoldingInjection() && !withNamedComplexInjection() && !withProteinFamilyInjection()) { bldr.append(INJECTIONS_DISABLED); markEndStage(bldr); stageOutput(bldr.toString()); return pn; } // load equivalences Set<EquivalenceDataIndex> equivs; try { equivs = p2.stage2LoadNamespaceEquivalences(); } catch (EquivalenceMapResolutionFailure e) { stageError(e.getUserFacingMessage()); equivs = emptySet(); } long t1 = currentTimeMillis(); int pct = stage5Parameter(pn, equivs, bldr); stage5Term(pn, pct); stage5Statement(pn, pct); long t2 = currentTimeMillis(); final int paramct = pn.getParameterTable().getTableParameters().size(); final int termct = pn.getTermTable().getTermValues().size(); final int stmtct = pn.getStatementTable().getStatements().size(); bldr.setLength(0); bldr.append(stmtct); bldr.append(" statements, "); bldr.append(termct); bldr.append(" terms, "); bldr.append(paramct); bldr.append(" parameters"); stageOutput(bldr.toString()); bldr.setLength(0); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); return pn; }
java
private ProtoNetwork stage5(ProtoNetwork pn) { beginStage(PHASE3_STAGE5_HDR, "5", NUM_PHASES); final StringBuilder bldr = new StringBuilder(); if (!withGeneScaffoldingInjection() && !withNamedComplexInjection() && !withProteinFamilyInjection()) { bldr.append(INJECTIONS_DISABLED); markEndStage(bldr); stageOutput(bldr.toString()); return pn; } // load equivalences Set<EquivalenceDataIndex> equivs; try { equivs = p2.stage2LoadNamespaceEquivalences(); } catch (EquivalenceMapResolutionFailure e) { stageError(e.getUserFacingMessage()); equivs = emptySet(); } long t1 = currentTimeMillis(); int pct = stage5Parameter(pn, equivs, bldr); stage5Term(pn, pct); stage5Statement(pn, pct); long t2 = currentTimeMillis(); final int paramct = pn.getParameterTable().getTableParameters().size(); final int termct = pn.getTermTable().getTermValues().size(); final int stmtct = pn.getStatementTable().getStatements().size(); bldr.setLength(0); bldr.append(stmtct); bldr.append(" statements, "); bldr.append(termct); bldr.append(" terms, "); bldr.append(paramct); bldr.append(" parameters"); stageOutput(bldr.toString()); bldr.setLength(0); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); return pn; }
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Runs stage five equivalencing of the proto-network. @param pn Proto-network, post-scaffolding @return Equivalenced proto-network
[ "Runs", "stage", "five", "equivalencing", "of", "the", "proto", "-", "network", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L1167-L1214
146,233
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.stage5Parameter
private int stage5Parameter(final ProtoNetwork network, Set<EquivalenceDataIndex> equivalences, final StringBuilder bldr) { bldr.append("Equivalencing parameters"); stageOutput(bldr.toString()); ProtoNetwork ret = network; int ct = 0; try { ct = p2.stage3EquivalenceParameters(ret, equivalences); stageOutput("(" + ct + " equivalences)"); } catch (IOException ioex) { final String err = ioex.getMessage(); fatal(err); } return ct; }
java
private int stage5Parameter(final ProtoNetwork network, Set<EquivalenceDataIndex> equivalences, final StringBuilder bldr) { bldr.append("Equivalencing parameters"); stageOutput(bldr.toString()); ProtoNetwork ret = network; int ct = 0; try { ct = p2.stage3EquivalenceParameters(ret, equivalences); stageOutput("(" + ct + " equivalences)"); } catch (IOException ioex) { final String err = ioex.getMessage(); fatal(err); } return ct; }
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Stage five parameter equivalencing. @param network the {@link ProtoNetwork network} to equivalence @param equivalences the {@link Set set} of {@link EquivalenceDataIndex} @param bldr the {@link StringBuilder} @return the {@code int} count of parameter equivalences
[ "Stage", "five", "parameter", "equivalencing", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L1224-L1239
146,234
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.stage5Term
private void stage5Term(final ProtoNetwork network, int pct) { if (pct > 0) { stageOutput("Equivalencing terms"); int tct = p2.stage3EquivalenceTerms(network); stageOutput("(" + tct + " equivalences)"); } else { stageOutput("Skipping term equivalencing"); } }
java
private void stage5Term(final ProtoNetwork network, int pct) { if (pct > 0) { stageOutput("Equivalencing terms"); int tct = p2.stage3EquivalenceTerms(network); stageOutput("(" + tct + " equivalences)"); } else { stageOutput("Skipping term equivalencing"); } }
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Stage five term equivalencing. @param network the {@link ProtoNetwork network} to equivalence @param pct the parameter equivalencing count to control output
[ "Stage", "five", "term", "equivalencing", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L1247-L1255
146,235
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.stage5Statement
private void stage5Statement(final ProtoNetwork network, int pct) { if (pct > 0) { stageOutput("Equivalencing statements"); int sct = p2.stage3EquivalenceStatements(network); stageOutput("(" + sct + " equivalences)"); } else { stageOutput("Skipping statement equivalencing"); } }
java
private void stage5Statement(final ProtoNetwork network, int pct) { if (pct > 0) { stageOutput("Equivalencing statements"); int sct = p2.stage3EquivalenceStatements(network); stageOutput("(" + sct + " equivalences)"); } else { stageOutput("Skipping statement equivalencing"); } }
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Stage five statement equivalencing. @param network the {@link ProtoNetwork network} to equivalence @param pct the parameter equivalencing count to control output
[ "Stage", "five", "statement", "equivalencing", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L1263-L1271
146,236
OpenBEL/openbel-framework
org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java
PhaseThreeApplication.stage6
private void stage6(ProtoNetwork pn) { beginStage(PHASE3_STAGE6_HDR, "6", NUM_PHASES); stageOutput("Saving augmented network"); final String rootpath = artifactPath.getAbsolutePath(); long t1 = currentTimeMillis(); try { p3.write(rootpath, pn); if (withDebug()) { try { TextProtoNetworkExternalizer textExternalizer = new TextProtoNetworkExternalizer(); textExternalizer.writeProtoNetwork(pn, rootpath); } catch (ProtoNetworkError e) { error("Could not write out equivalenced proto network."); } } } catch (ProtoNetworkError e) { stageError(e.getUserFacingMessage()); bail(NO_PROTO_NETWORKS_SAVED); } long t2 = currentTimeMillis(); final StringBuilder bldr = new StringBuilder(); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); }
java
private void stage6(ProtoNetwork pn) { beginStage(PHASE3_STAGE6_HDR, "6", NUM_PHASES); stageOutput("Saving augmented network"); final String rootpath = artifactPath.getAbsolutePath(); long t1 = currentTimeMillis(); try { p3.write(rootpath, pn); if (withDebug()) { try { TextProtoNetworkExternalizer textExternalizer = new TextProtoNetworkExternalizer(); textExternalizer.writeProtoNetwork(pn, rootpath); } catch (ProtoNetworkError e) { error("Could not write out equivalenced proto network."); } } } catch (ProtoNetworkError e) { stageError(e.getUserFacingMessage()); bail(NO_PROTO_NETWORKS_SAVED); } long t2 = currentTimeMillis(); final StringBuilder bldr = new StringBuilder(); markTime(bldr, t1, t2); markEndStage(bldr); stageOutput(bldr.toString()); }
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Runs stage six network saving. @param pn Proto-network
[ "Runs", "stage", "six", "network", "saving", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.tools/src/main/java/org/openbel/framework/tools/PhaseThreeApplication.java#L1278-L1307
146,237
geomajas/geomajas-project-client-gwt2
plugin/corewidget/example-jar/src/main/java/org/geomajas/gwt2/plugin/corewidget/example/client/sample/feature/tooltip/ToolTip.java
ToolTip.addContentAndShow
public void addContentAndShow(List<Label> content, int left, int top, boolean showCloseButton) { // Add a closeButton when showCloseButton is true. if (showCloseButton) { Label closeButtonLabel = new Label(" X "); closeButtonLabel.addStyleName(ToolTipResource.INSTANCE.css().toolTipCloseButton()); contentPanel.add(closeButtonLabel); closeButtonLabel.addClickHandler(new ClickHandler() { @Override public void onClick(ClickEvent event) { hide(); } }); } // Add the content to the panel. for (Label l : content) { l.addStyleName(ToolTipResource.INSTANCE.css().toolTipLine()); contentPanel.add(l); } // Finally set position of the tooltip and show it. toolTip.setPopupPosition(left, top); toolTip.show(); }
java
public void addContentAndShow(List<Label> content, int left, int top, boolean showCloseButton) { // Add a closeButton when showCloseButton is true. if (showCloseButton) { Label closeButtonLabel = new Label(" X "); closeButtonLabel.addStyleName(ToolTipResource.INSTANCE.css().toolTipCloseButton()); contentPanel.add(closeButtonLabel); closeButtonLabel.addClickHandler(new ClickHandler() { @Override public void onClick(ClickEvent event) { hide(); } }); } // Add the content to the panel. for (Label l : content) { l.addStyleName(ToolTipResource.INSTANCE.css().toolTipLine()); contentPanel.add(l); } // Finally set position of the tooltip and show it. toolTip.setPopupPosition(left, top); toolTip.show(); }
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Add content to the tooltip and show it with the given parameters. @param content a list of Labels @param left the left position of the tooltip @param top the top position of the tooltip
[ "Add", "content", "to", "the", "tooltip", "and", "show", "it", "with", "the", "given", "parameters", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/corewidget/example-jar/src/main/java/org/geomajas/gwt2/plugin/corewidget/example/client/sample/feature/tooltip/ToolTip.java#L78-L104
146,238
geomajas/geomajas-project-client-gwt2
plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/feature/featureinfo/FeatureInfoWidget.java
FeatureInfoWidget.setFeature
@Override public void setFeature(Feature feature) { for (HasFeature action : actions) { action.setFeature(feature); } presenter.setFeature(feature); }
java
@Override public void setFeature(Feature feature) { for (HasFeature action : actions) { action.setFeature(feature); } presenter.setFeature(feature); }
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Set the feature to display. @param feature The feature.
[ "Set", "the", "feature", "to", "display", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/feature/featureinfo/FeatureInfoWidget.java#L66-L72
146,239
geomajas/geomajas-project-client-gwt2
plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/feature/featureinfo/FeatureInfoWidget.java
FeatureInfoWidget.addHasFeature
public void addHasFeature(HasFeature action) { actions.add(action); action.setFeature(presenter.getFeature()); }
java
public void addHasFeature(HasFeature action) { actions.add(action); action.setFeature(presenter.getFeature()); }
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Add an object for this feature to the widget. When the displayed feature changes, the feature associated with the object is automatically updated. @param action The action to add.
[ "Add", "an", "object", "for", "this", "feature", "to", "the", "widget", ".", "When", "the", "displayed", "feature", "changes", "the", "feature", "associated", "with", "the", "object", "is", "automatically", "updated", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/feature/featureinfo/FeatureInfoWidget.java#L80-L83
146,240
nohana/Amalgam
amalgam/src/main/java/com/amalgam/lang/StringUtils.java
StringUtils.byteToHex
public static String byteToHex(byte[] data) { if (data == null) { return null; } final StringBuilder builder = new StringBuilder(); for (final byte b : data) { builder.append(String.format("%02X", b)); } return builder.toString(); }
java
public static String byteToHex(byte[] data) { if (data == null) { return null; } final StringBuilder builder = new StringBuilder(); for (final byte b : data) { builder.append(String.format("%02X", b)); } return builder.toString(); }
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Convert byte data to hex code string. @param data to convert. @return the hex code of the byte array.
[ "Convert", "byte", "data", "to", "hex", "code", "string", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/lang/StringUtils.java#L39-L48
146,241
OpenBEL/openbel-framework
org.openbel.framework.core/src/main/java/org/openbel/framework/core/protonetwork/BinaryProtoNetworkExternalizer.java
BinaryProtoNetworkExternalizer.readProtoNetwork
@Override public ProtoNetwork readProtoNetwork( ProtoNetworkDescriptor protoNetworkDescriptor) throws ProtoNetworkError { if (!BinaryProtoNetworkDescriptor.class .isAssignableFrom(protoNetworkDescriptor.getClass())) { String err = "protoNetworkDescriptor cannot be of type "; err = err.concat(protoNetworkDescriptor.getClass().getName()); err = err.concat(", need type "); err = err.concat(BinaryProtoNetworkDescriptor.class.getName()); throw new InvalidArgument(err); } BinaryProtoNetworkDescriptor binaryProtoNetworkDescriptor = (BinaryProtoNetworkDescriptor) protoNetworkDescriptor; File pn = binaryProtoNetworkDescriptor.getProtoNetwork(); ObjectInputStream ois = null; try { ois = new ObjectInputStream(new FileInputStream(pn)); ProtoNetwork network = new ProtoNetwork(); network.readExternal(ois); return network; } catch (FileNotFoundException e) { final String msg = "Cannot find binary proto-network for path"; throw new ProtoNetworkError(pn.getAbsolutePath(), msg, e); } catch (IOException e) { final String msg = "Cannot read binary proto-network for path"; throw new ProtoNetworkError(pn.getAbsolutePath(), msg, e); } catch (ClassNotFoundException e) { final String msg = "Cannot read proto-network for path"; throw new ProtoNetworkError(pn.getAbsolutePath(), msg, e); } finally { // clean up IO resources IOUtils.closeQuietly(ois); } }
java
@Override public ProtoNetwork readProtoNetwork( ProtoNetworkDescriptor protoNetworkDescriptor) throws ProtoNetworkError { if (!BinaryProtoNetworkDescriptor.class .isAssignableFrom(protoNetworkDescriptor.getClass())) { String err = "protoNetworkDescriptor cannot be of type "; err = err.concat(protoNetworkDescriptor.getClass().getName()); err = err.concat(", need type "); err = err.concat(BinaryProtoNetworkDescriptor.class.getName()); throw new InvalidArgument(err); } BinaryProtoNetworkDescriptor binaryProtoNetworkDescriptor = (BinaryProtoNetworkDescriptor) protoNetworkDescriptor; File pn = binaryProtoNetworkDescriptor.getProtoNetwork(); ObjectInputStream ois = null; try { ois = new ObjectInputStream(new FileInputStream(pn)); ProtoNetwork network = new ProtoNetwork(); network.readExternal(ois); return network; } catch (FileNotFoundException e) { final String msg = "Cannot find binary proto-network for path"; throw new ProtoNetworkError(pn.getAbsolutePath(), msg, e); } catch (IOException e) { final String msg = "Cannot read binary proto-network for path"; throw new ProtoNetworkError(pn.getAbsolutePath(), msg, e); } catch (ClassNotFoundException e) { final String msg = "Cannot read proto-network for path"; throw new ProtoNetworkError(pn.getAbsolutePath(), msg, e); } finally { // clean up IO resources IOUtils.closeQuietly(ois); } }
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Reads a proto network from a descriptor representing a binary file. @param protoNetworkDescriptor {@link ProtoNetworkDescriptor}, the proto network descriptor @return {@link ProtoNetwork}, the read proto network, which cannot be null @throws InvalidArgument Thrown if the {@code protoNetworkDescriptor} was not of type {@link BinaryProtoNetworkDescriptor} @throws ProtoNetworkError, if there was an error reading from the {@link ProtoNetworkDescriptor}
[ "Reads", "a", "proto", "network", "from", "a", "descriptor", "representing", "a", "binary", "file", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.core/src/main/java/org/openbel/framework/core/protonetwork/BinaryProtoNetworkExternalizer.java#L76-L112
146,242
OpenBEL/openbel-framework
org.openbel.framework.core/src/main/java/org/openbel/framework/core/protonetwork/BinaryProtoNetworkExternalizer.java
BinaryProtoNetworkExternalizer.writeProtoNetwork
@Override public ProtoNetworkDescriptor writeProtoNetwork(ProtoNetwork protoNetwork, String protoNetworkRootPath) throws ProtoNetworkError { final String filename = PROTO_NETWORK_FILENAME; final File file = new File(asPath(protoNetworkRootPath, filename)); ObjectOutputStream oos = null; try { oos = new ObjectOutputStream(new FileOutputStream(file)); protoNetwork.writeExternal(oos); return new BinaryProtoNetworkDescriptor(file); } catch (IOException e) { final String name = file.getAbsolutePath(); final String msg = "Cannot create temporary binary file for proto-network"; throw new ProtoNetworkError(name, msg, e); } finally { // clean up IO resources IOUtils.closeQuietly(oos); } }
java
@Override public ProtoNetworkDescriptor writeProtoNetwork(ProtoNetwork protoNetwork, String protoNetworkRootPath) throws ProtoNetworkError { final String filename = PROTO_NETWORK_FILENAME; final File file = new File(asPath(protoNetworkRootPath, filename)); ObjectOutputStream oos = null; try { oos = new ObjectOutputStream(new FileOutputStream(file)); protoNetwork.writeExternal(oos); return new BinaryProtoNetworkDescriptor(file); } catch (IOException e) { final String name = file.getAbsolutePath(); final String msg = "Cannot create temporary binary file for proto-network"; throw new ProtoNetworkError(name, msg, e); } finally { // clean up IO resources IOUtils.closeQuietly(oos); } }
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Writes a binary-based proto network and produces a descriptor including the binary file. @param protoNetwork {@link ProtoNetwork}, the proto network, which cannot be null @param protoNetworkRootPath {@link String}, the root path where proto network files should be created @return {@link ProtoNetworkDescriptor}, the proto network descriptor @throws ProtoNetworkError, if there was an error writing the {@link ProtoNetwork}
[ "Writes", "a", "binary", "-", "based", "proto", "network", "and", "produces", "a", "descriptor", "including", "the", "binary", "file", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.core/src/main/java/org/openbel/framework/core/protonetwork/BinaryProtoNetworkExternalizer.java#L126-L146
146,243
astrapi69/jaulp-wicket
jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/ajax/editable/tabs/AjaxCloseableTabbedPanel.java
AjaxCloseableTabbedPanel.setSelectedTab
public AjaxCloseableTabbedPanel<T> setSelectedTab(final int index) { if ((index < 0) || (index >= tabs.size())) { throw new IndexOutOfBoundsException(); } setDefaultModelObject(index); // force the tab's component to be aquired again if already the current tab currentTab = -1; setCurrentTab(index); return this; }
java
public AjaxCloseableTabbedPanel<T> setSelectedTab(final int index) { if ((index < 0) || (index >= tabs.size())) { throw new IndexOutOfBoundsException(); } setDefaultModelObject(index); // force the tab's component to be aquired again if already the current tab currentTab = -1; setCurrentTab(index); return this; }
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sets the selected tab @param index index of the tab to select @return this for chaining @throws IndexOutOfBoundsException if index is not in the range of available tabs
[ "sets", "the", "selected", "tab" ]
85d74368d00abd9bb97659b5794e38c0f8a013d4
https://github.com/astrapi69/jaulp-wicket/blob/85d74368d00abd9bb97659b5794e38c0f8a013d4/jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/ajax/editable/tabs/AjaxCloseableTabbedPanel.java#L770-L784
146,244
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/models/CDownloadRequest.java
CDownloadRequest.getHttpHeaders
public Headers getHttpHeaders() { Headers headers = new Headers(); if ( byteRange != null ) { StringBuilder rangeBuilder = new StringBuilder( "bytes=" ); long start; if ( byteRange.offset >= 0 ) { rangeBuilder.append( byteRange.offset ); start = byteRange.offset; } else { start = 1; } rangeBuilder.append( "-" ); if ( byteRange.length > 0 ) { rangeBuilder.append( start + byteRange.length - 1 ); } Header rangeHeader = new BasicHeader( "Range", rangeBuilder.toString() ); headers.addHeader( rangeHeader ); } return headers; }
java
public Headers getHttpHeaders() { Headers headers = new Headers(); if ( byteRange != null ) { StringBuilder rangeBuilder = new StringBuilder( "bytes=" ); long start; if ( byteRange.offset >= 0 ) { rangeBuilder.append( byteRange.offset ); start = byteRange.offset; } else { start = 1; } rangeBuilder.append( "-" ); if ( byteRange.length > 0 ) { rangeBuilder.append( start + byteRange.length - 1 ); } Header rangeHeader = new BasicHeader( "Range", rangeBuilder.toString() ); headers.addHeader( rangeHeader ); } return headers; }
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Get the HTTP headers to be used for download request. Default implementation only handles Range header. @return The headers
[ "Get", "the", "HTTP", "headers", "to", "be", "used", "for", "download", "request", "." ]
20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/models/CDownloadRequest.java#L62-L85
146,245
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/models/CDownloadRequest.java
CDownloadRequest.getByteSink
public ByteSink getByteSink() { ByteSink bs = byteSink; if ( progressListener != null ) { bs = new ProgressByteSink( bs, progressListener ); } return bs; }
java
public ByteSink getByteSink() { ByteSink bs = byteSink; if ( progressListener != null ) { bs = new ProgressByteSink( bs, progressListener ); } return bs; }
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If no progress listener has been set, return the byte sink defined in constructor, otherwise decorate it. @return the byte sink to be used for download operations.
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20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/models/CDownloadRequest.java#L132-L139
146,246
nohana/Amalgam
amalgam/src/main/java/com/amalgam/view/InputMethodUtils.java
InputMethodUtils.hide
public static void hide(Context context, View v) { InputMethodManager manager = (InputMethodManager) context.getSystemService(Context.INPUT_METHOD_SERVICE); manager.hideSoftInputFromWindow(v.getWindowToken(), 0); }
java
public static void hide(Context context, View v) { InputMethodManager manager = (InputMethodManager) context.getSystemService(Context.INPUT_METHOD_SERVICE); manager.hideSoftInputFromWindow(v.getWindowToken(), 0); }
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Hide the software input window. @param context the context. @param v the view that holds the window token.
[ "Hide", "the", "software", "input", "window", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/view/InputMethodUtils.java#L36-L39
146,247
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/credentials/OAuth2Credentials.java
OAuth2Credentials.hasExpired
public boolean hasExpired() { if ( expiresAt == null ) { LOGGER.debug( "hasExpired - token is not expirable" ); return false; } long now = System.currentTimeMillis(); if ( LOGGER.isDebugEnabled() ) { LOGGER.debug( "hasExpired? - now: {} expiredAt: {} ", new Date( now ), expiresAt ); } return now > expiresAt.getTime(); }
java
public boolean hasExpired() { if ( expiresAt == null ) { LOGGER.debug( "hasExpired - token is not expirable" ); return false; } long now = System.currentTimeMillis(); if ( LOGGER.isDebugEnabled() ) { LOGGER.debug( "hasExpired? - now: {} expiredAt: {} ", new Date( now ), expiresAt ); } return now > expiresAt.getTime(); }
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Indicates if the access token has expired @return true if expired, false otherwise
[ "Indicates", "if", "the", "access", "token", "has", "expired" ]
20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/credentials/OAuth2Credentials.java#L68-L80
146,248
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/credentials/OAuth2Credentials.java
OAuth2Credentials.update
public void update( JSONObject json ) { accessToken = json.getString( ACCESS_TOKEN ); tokenType = json.getString( TOKEN_TYPE ); expiresAt = calculateExpiresAt( json ); if ( json.has( OAuth2.REFRESH_TOKEN ) ) { refreshToken = json.getString( OAuth2.REFRESH_TOKEN ); } }
java
public void update( JSONObject json ) { accessToken = json.getString( ACCESS_TOKEN ); tokenType = json.getString( TOKEN_TYPE ); expiresAt = calculateExpiresAt( json ); if ( json.has( OAuth2.REFRESH_TOKEN ) ) { refreshToken = json.getString( OAuth2.REFRESH_TOKEN ); } }
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Update the credentials from a JSON request response. @param json The JSON object containing the values to update
[ "Update", "the", "credentials", "from", "a", "JSON", "request", "response", "." ]
20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/credentials/OAuth2Credentials.java#L117-L125
146,249
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/credentials/OAuth2Credentials.java
OAuth2Credentials.calculateExpiresAt
private static Date calculateExpiresAt( JSONObject jsonObj ) { long expiresAt_s = jsonObj.optLong( OAuth2Credentials.EXPIRES_AT, -1 ); // If nothing specified in json, check if expires_in is present: // this happens when token is received from oauth server if ( expiresAt_s < 0 && jsonObj.has( OAuth2Credentials.EXPIRES_IN ) ) { long expiresIn_s = jsonObj.getLong( OAuth2Credentials.EXPIRES_IN ); // We take a margin to be safe: it appears that some providers do NOT take any margin // so token will not be early refreshed if ( expiresIn_s > 6 * 60 ) { // should be always true expiresIn_s -= 5 * 60; // 5 minutes to be safe } expiresAt_s = System.currentTimeMillis() / 1000 + expiresIn_s; } if ( expiresAt_s < 0 ) { return null; } return new Date( expiresAt_s * 1000 ); }
java
private static Date calculateExpiresAt( JSONObject jsonObj ) { long expiresAt_s = jsonObj.optLong( OAuth2Credentials.EXPIRES_AT, -1 ); // If nothing specified in json, check if expires_in is present: // this happens when token is received from oauth server if ( expiresAt_s < 0 && jsonObj.has( OAuth2Credentials.EXPIRES_IN ) ) { long expiresIn_s = jsonObj.getLong( OAuth2Credentials.EXPIRES_IN ); // We take a margin to be safe: it appears that some providers do NOT take any margin // so token will not be early refreshed if ( expiresIn_s > 6 * 60 ) { // should be always true expiresIn_s -= 5 * 60; // 5 minutes to be safe } expiresAt_s = System.currentTimeMillis() / 1000 + expiresIn_s; } if ( expiresAt_s < 0 ) { return null; } return new Date( expiresAt_s * 1000 ); }
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Calculate expiration timestamp, if not defined. Several cases: absolute expiration time exists in json, or only relative, or no expiration. @param jsonObj @return expiration date, or null if none.
[ "Calculate", "expiration", "timestamp", "if", "not", "defined", "." ]
20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/credentials/OAuth2Credentials.java#L135-L154
146,250
ihaolin/session
session-redis/src/main/java/me/hao0/session/redis/RedisExecutor.java
RedisExecutor.execute
public <V> V execute(RedisCallback<V> cb) { Jedis jedis = jedisPool.getResource(); boolean success = true; try { return cb.execute(jedis); } catch (JedisException e) { success = false; if (jedis != null) { jedisPool.returnBrokenResource(jedis); } throw e; } finally { if (success) { jedisPool.returnResource(jedis); } } }
java
public <V> V execute(RedisCallback<V> cb) { Jedis jedis = jedisPool.getResource(); boolean success = true; try { return cb.execute(jedis); } catch (JedisException e) { success = false; if (jedis != null) { jedisPool.returnBrokenResource(jedis); } throw e; } finally { if (success) { jedisPool.returnResource(jedis); } } }
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execute a redis operation @param cb callback @param <V> return type @return result
[ "execute", "a", "redis", "operation" ]
322c3a9f47b305a39345135fa8163dd7e065b4f8
https://github.com/ihaolin/session/blob/322c3a9f47b305a39345135fa8163dd7e065b4f8/session-redis/src/main/java/me/hao0/session/redis/RedisExecutor.java#L47-L63
146,251
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/record/Column.java
Column.encode
public byte[] encode(T t) { if (t == null) { if (!nullable) { throw new InvalidArgument("cannot encode a null type"); } return getNullValue(); } return encodeType(t); }
java
public byte[] encode(T t) { if (t == null) { if (!nullable) { throw new InvalidArgument("cannot encode a null type"); } return getNullValue(); } return encodeType(t); }
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Encodes the column's type. @param t {@code <T>} @return {@code byte[]}
[ "Encodes", "the", "column", "s", "type", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/record/Column.java#L151-L159
146,252
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/record/Column.java
Column.setSize
void setSize(int size) { if (this.size != 0) { final String fmt = "column size is known: %d"; final String msg = format(fmt, this.size); throw new IllegalStateException(msg); } this.size = size; this.hash = hash(); }
java
void setSize(int size) { if (this.size != 0) { final String fmt = "column size is known: %d"; final String msg = format(fmt, this.size); throw new IllegalStateException(msg); } this.size = size; this.hash = hash(); }
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Sets the column's size and recalculates its hash. @param size Number of bytes defining this {@link Column column}
[ "Sets", "the", "column", "s", "size", "and", "recalculates", "its", "hash", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/record/Column.java#L196-L204
146,253
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/sequence/SequenceLabelerEventStream.java
SequenceLabelerEventStream.additionalContext
public static String[][] additionalContext(final String[] tokens, final Map<String, String> prevMap) { final String[][] ac = new String[tokens.length][1]; for (int ti = 0; ti < tokens.length; ti++) { final String pt = prevMap.get(tokens[ti]); ac[ti][0] = "pd=" + pt; } return ac; }
java
public static String[][] additionalContext(final String[] tokens, final Map<String, String> prevMap) { final String[][] ac = new String[tokens.length][1]; for (int ti = 0; ti < tokens.length; ti++) { final String pt = prevMap.get(tokens[ti]); ac[ti][0] = "pd=" + pt; } return ac; }
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Generated previous decision features for each token based on contents of the specified map. @param tokens The token for which the context is generated. @param prevMap A mapping of tokens to their previous decisions. @return An additional context array with features for each token.
[ "Generated", "previous", "decision", "features", "for", "each", "token", "based", "on", "contents", "of", "the", "specified", "map", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/sequence/SequenceLabelerEventStream.java#L112-L121
146,254
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.getSize
public static Point getSize(String path) { BitmapFactory.Options options = new BitmapFactory.Options(); options.inJustDecodeBounds = true; BitmapFactory.decodeFile(path, options); int width = options.outWidth; int height = options.outHeight; return new Point(width, height); }
java
public static Point getSize(String path) { BitmapFactory.Options options = new BitmapFactory.Options(); options.inJustDecodeBounds = true; BitmapFactory.decodeFile(path, options); int width = options.outWidth; int height = options.outHeight; return new Point(width, height); }
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Get width and height of the bitmap specified with the file path. @param path the bitmap file path. @return the size.
[ "Get", "width", "and", "height", "of", "the", "bitmap", "specified", "with", "the", "file", "path", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L103-L110
146,255
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.getSize
public static Point getSize(byte[] byteArray, int offset, int length) { BitmapFactory.Options options = new BitmapFactory.Options(); options.inJustDecodeBounds = true; BitmapFactory.decodeByteArray(byteArray, offset, length, options); int width = options.outWidth; int height = options.outHeight; return new Point(width, height); }
java
public static Point getSize(byte[] byteArray, int offset, int length) { BitmapFactory.Options options = new BitmapFactory.Options(); options.inJustDecodeBounds = true; BitmapFactory.decodeByteArray(byteArray, offset, length, options); int width = options.outWidth; int height = options.outHeight; return new Point(width, height); }
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Get width and height of the bitmap specified with the byte array. @param byteArray the bitmap itself. @param offset offset index. @param length array length. @return the size.
[ "Get", "width", "and", "height", "of", "the", "bitmap", "specified", "with", "the", "byte", "array", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L128-L135
146,256
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.getSize
public static Point getSize(Resources res, int resId) { BitmapFactory.Options options = new BitmapFactory.Options(); options.inJustDecodeBounds = true; BitmapFactory.decodeResource(res, resId, options); int width = options.outWidth; int height = options.outHeight; return new Point(width, height); }
java
public static Point getSize(Resources res, int resId) { BitmapFactory.Options options = new BitmapFactory.Options(); options.inJustDecodeBounds = true; BitmapFactory.decodeResource(res, resId, options); int width = options.outWidth; int height = options.outHeight; return new Point(width, height); }
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Get width and height of the bitmap specified with the resource id. @param res resource accessor. @param resId the resource id of the drawable. @return the drawable bitmap size.
[ "Get", "width", "and", "height", "of", "the", "bitmap", "specified", "with", "the", "resource", "id", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L153-L160
146,257
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.toByteArray
public static byte[] toByteArray(Bitmap bitmap, Bitmap.CompressFormat format, int quality) { ByteArrayOutputStream out = null; try { out = new ByteArrayOutputStream(); bitmap.compress(format, quality, out); return out.toByteArray(); } finally { CloseableUtils.close(out); } }
java
public static byte[] toByteArray(Bitmap bitmap, Bitmap.CompressFormat format, int quality) { ByteArrayOutputStream out = null; try { out = new ByteArrayOutputStream(); bitmap.compress(format, quality, out); return out.toByteArray(); } finally { CloseableUtils.close(out); } }
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Compress the bitmap to the byte array as the specified format and quality. @param bitmap to compress. @param format the format. @param quality the quality of the compressed bitmap. @return the compressed bitmap byte array.
[ "Compress", "the", "bitmap", "to", "the", "byte", "array", "as", "the", "specified", "format", "and", "quality", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L169-L178
146,258
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.shrink
public static Bitmap shrink(Bitmap bitmap, float scale) { if (scale >= 1.0f) { return bitmap.copy(bitmap.getConfig(), false); } Matrix matrix = new Matrix(); matrix.postScale(scale, scale); return Bitmap.createBitmap(bitmap, 0, 0, (int) (scale * bitmap.getWidth()), (int) (scale * bitmap.getHeight()), matrix, true); }
java
public static Bitmap shrink(Bitmap bitmap, float scale) { if (scale >= 1.0f) { return bitmap.copy(bitmap.getConfig(), false); } Matrix matrix = new Matrix(); matrix.postScale(scale, scale); return Bitmap.createBitmap(bitmap, 0, 0, (int) (scale * bitmap.getWidth()), (int) (scale * bitmap.getHeight()), matrix, true); }
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Shrink the bitmap to the specified scale. @param bitmap to shrink. @param scale the shrink scale, must be < 1.0. @return the shrunk bitmap.
[ "Shrink", "the", "bitmap", "to", "the", "specified", "scale", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L186-L195
146,259
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.storeOnExternalStorage
@TargetApi(Build.VERSION_CODES.FROYO) public static File storeOnExternalStorage(Context context, Bitmap bitmap, String type, String path, String filename, Bitmap.CompressFormat format, int quality) { if (!Environment.MEDIA_MOUNTED.equals(Environment.getExternalStorageState())) { // we cannot save a bitmap on the external storage on media not mounted. return null; } File dir = new File(context.getExternalFilesDir(type), path); FileUtils.makeDirsIfNeeded(dir); File file = new File(dir, filename); if (!storeAsFile(bitmap, file, format, quality)) { return null; } return file; }
java
@TargetApi(Build.VERSION_CODES.FROYO) public static File storeOnExternalStorage(Context context, Bitmap bitmap, String type, String path, String filename, Bitmap.CompressFormat format, int quality) { if (!Environment.MEDIA_MOUNTED.equals(Environment.getExternalStorageState())) { // we cannot save a bitmap on the external storage on media not mounted. return null; } File dir = new File(context.getExternalFilesDir(type), path); FileUtils.makeDirsIfNeeded(dir); File file = new File(dir, filename); if (!storeAsFile(bitmap, file, format, quality)) { return null; } return file; }
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Store the bitmap on the external storage path. @param context the context. @param bitmap to store. @param type type of the bitmap. @param path file path. @param filename file name. @param format bitmap format. @param quality the quality of the compressed bitmap. @return the compressed bitmap file.
[ "Store", "the", "bitmap", "on", "the", "external", "storage", "path", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L225-L238
146,260
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.storeOnCacheDir
public static File storeOnCacheDir(Context context, Bitmap bitmap, String path, String filename, Bitmap.CompressFormat format, int quality) { File dir = new File(context.getCacheDir(), path); FileUtils.makeDirsIfNeeded(dir); File file = new File(dir, filename); if (!storeAsFile(bitmap, file, format, quality)) { return null; } return file; }
java
public static File storeOnCacheDir(Context context, Bitmap bitmap, String path, String filename, Bitmap.CompressFormat format, int quality) { File dir = new File(context.getCacheDir(), path); FileUtils.makeDirsIfNeeded(dir); File file = new File(dir, filename); if (!storeAsFile(bitmap, file, format, quality)) { return null; } return file; }
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Store the bitmap on the cache directory path. @param context the context. @param bitmap to store. @param path file path. @param filename file name. @param format bitmap format. @param quality the quality of the compressed bitmap. @return the compressed bitmap file.
[ "Store", "the", "bitmap", "on", "the", "cache", "directory", "path", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L250-L258
146,261
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.storeOnApplicationPrivateDir
public static boolean storeOnApplicationPrivateDir(Context context, Bitmap bitmap, String filename, Bitmap.CompressFormat format, int quality) { OutputStream out = null; try { out = new BufferedOutputStream(context.openFileOutput(filename, Context.MODE_PRIVATE)); return bitmap.compress(format, quality, out); } catch (FileNotFoundException e) { Log.e(TAG, "no such file for saving bitmap: ", e); return false; } finally { CloseableUtils.close(out); } }
java
public static boolean storeOnApplicationPrivateDir(Context context, Bitmap bitmap, String filename, Bitmap.CompressFormat format, int quality) { OutputStream out = null; try { out = new BufferedOutputStream(context.openFileOutput(filename, Context.MODE_PRIVATE)); return bitmap.compress(format, quality, out); } catch (FileNotFoundException e) { Log.e(TAG, "no such file for saving bitmap: ", e); return false; } finally { CloseableUtils.close(out); } }
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Store the bitmap on the application private directory path. @param context the context. @param bitmap to store. @param filename file name. @param format bitmap format. @param quality the quality of the compressed bitmap. @return the compressed bitmap file.
[ "Store", "the", "bitmap", "on", "the", "application", "private", "directory", "path", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L269-L280
146,262
nohana/Amalgam
amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java
BitmapUtils.storeAsFile
public static boolean storeAsFile(Bitmap bitmap, File file, Bitmap.CompressFormat format, int quality) { OutputStream out = null; try { out = new BufferedOutputStream(new FileOutputStream(file)); return bitmap.compress(format, quality, out); } catch (FileNotFoundException e) { Log.e(TAG, "no such file for saving bitmap: ", e); return false; } finally { CloseableUtils.close(out); } }
java
public static boolean storeAsFile(Bitmap bitmap, File file, Bitmap.CompressFormat format, int quality) { OutputStream out = null; try { out = new BufferedOutputStream(new FileOutputStream(file)); return bitmap.compress(format, quality, out); } catch (FileNotFoundException e) { Log.e(TAG, "no such file for saving bitmap: ", e); return false; } finally { CloseableUtils.close(out); } }
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Store the bitmap as a file. @param bitmap to store. @param format bitmap format. @param quality the quality of the compressed bitmap. @return the compressed bitmap file.
[ "Store", "the", "bitmap", "as", "a", "file", "." ]
57809ddbfe7897e979cf507982ce0b3aa5e0ed8a
https://github.com/nohana/Amalgam/blob/57809ddbfe7897e979cf507982ce0b3aa5e0ed8a/amalgam/src/main/java/com/amalgam/graphics/BitmapUtils.java#L289-L300
146,263
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/providers/cloudme/CMBlob.java
CMBlob.toCBlob
public CBlob toCBlob() { CBlob cBlob = new CBlob( getPath(), length, contentType ); cBlob.setModificationDate( updated ); return cBlob; }
java
public CBlob toCBlob() { CBlob cBlob = new CBlob( getPath(), length, contentType ); cBlob.setModificationDate( updated ); return cBlob; }
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Converts a CloudMe Blob to a generic CBlob @return CBlob
[ "Converts", "a", "CloudMe", "Blob", "to", "a", "generic", "CBlob" ]
20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/providers/cloudme/CMBlob.java#L57-L63
146,264
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java
AbstractContextGenerator.punct
protected String punct(final Parse punct, final int i) { final StringBuilder feat = new StringBuilder(5); feat.append(i).append("="); feat.append(punct.getCoveredText()); return feat.toString(); }
java
protected String punct(final Parse punct, final int i) { final StringBuilder feat = new StringBuilder(5); feat.append(i).append("="); feat.append(punct.getCoveredText()); return feat.toString(); }
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Creates punctuation feature for the specified punctuation at the specified index based on the punctuation mark. @param punct The punctuation which is in context. @param i The index of the punctuation with relative to the parse. @return Punctuation feature for the specified parse and the specified punctuation at the specfied index.
[ "Creates", "punctuation", "feature", "for", "the", "specified", "punctuation", "at", "the", "specified", "index", "based", "on", "the", "punctuation", "mark", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java#L48-L53
146,265
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java
AbstractContextGenerator.punctbo
protected String punctbo(final Parse punct, final int i) { final StringBuilder feat = new StringBuilder(5); feat.append(i).append("="); feat.append(punct.getType()); return feat.toString(); }
java
protected String punctbo(final Parse punct, final int i) { final StringBuilder feat = new StringBuilder(5); feat.append(i).append("="); feat.append(punct.getType()); return feat.toString(); }
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Creates punctuation feature for the specified punctuation at the specfied index based on the punctuation's tag. @param punct The punctuation which is in context. @param i The index of the punctuation relative to the parse. @return Punctuation feature for the specified parse and the specified punctuation at the specfied index.
[ "Creates", "punctuation", "feature", "for", "the", "specified", "punctuation", "at", "the", "specfied", "index", "based", "on", "the", "punctuation", "s", "tag", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java#L66-L71
146,266
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java
AbstractContextGenerator.checkcons
protected void checkcons(final Parse child, final String i, final String type, final List<String> features) { final StringBuilder feat = new StringBuilder(20); feat.append("c").append(i).append("=").append(child.getType()).append("|") .append(child.getHead().getCoveredText()).append("|").append(type); features.add(feat.toString()); feat.setLength(0); feat.append("c").append(i).append("*=").append(child.getType()).append("|") .append(type); features.add(feat.toString()); }
java
protected void checkcons(final Parse child, final String i, final String type, final List<String> features) { final StringBuilder feat = new StringBuilder(20); feat.append("c").append(i).append("=").append(child.getType()).append("|") .append(child.getHead().getCoveredText()).append("|").append(type); features.add(feat.toString()); feat.setLength(0); feat.append("c").append(i).append("*=").append(child.getType()).append("|") .append(type); features.add(feat.toString()); }
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Produces features to determine whether the specified child node is part of a complete constituent of the specified type and adds those features to the specfied list. @param child The parse node to consider. @param i A string indicating the position of the child node. @param type The type of constituent being built. @param features List to add features to.
[ "Produces", "features", "to", "determine", "whether", "the", "specified", "child", "node", "is", "part", "of", "a", "complete", "constituent", "of", "the", "specified", "type", "and", "adds", "those", "features", "to", "the", "specfied", "list", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java#L514-L524
146,267
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java
AbstractContextGenerator.getFrontierNodes
protected void getFrontierNodes(final List<Parse> rf, final Parse[] nodes) { int leftIndex = 0; int prevHeadIndex = -1; for (int fi = 0; fi < rf.size(); fi++) { final Parse fn = rf.get(fi); final int headIndex = fn.getHeadIndex(); if (headIndex != prevHeadIndex) { nodes[leftIndex] = fn; leftIndex++; prevHeadIndex = headIndex; if (leftIndex == nodes.length) { break; } } } for (int ni = leftIndex; ni < nodes.length; ni++) { nodes[ni] = null; } }
java
protected void getFrontierNodes(final List<Parse> rf, final Parse[] nodes) { int leftIndex = 0; int prevHeadIndex = -1; for (int fi = 0; fi < rf.size(); fi++) { final Parse fn = rf.get(fi); final int headIndex = fn.getHeadIndex(); if (headIndex != prevHeadIndex) { nodes[leftIndex] = fn; leftIndex++; prevHeadIndex = headIndex; if (leftIndex == nodes.length) { break; } } } for (int ni = leftIndex; ni < nodes.length; ni++) { nodes[ni] = null; } }
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Populates specified nodes array with left-most right frontier node with a unique head. If the right frontier doesn't contain enough nodes, then nulls are placed in the array elements. @param rf The current right frontier. @param nodes The array to be populated.
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c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/parse/AbstractContextGenerator.java#L559-L578
146,268
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/protonetwork/model/TermParameterMapTable.java
TermParameterMapTable.getParameterIndexes
public List<Integer> getParameterIndexes(final int tid) { List<Integer> ret = termParameterIndex.get(tid); if (ret == null) { ret = emptyList(); } return unmodifiableList(ret); }
java
public List<Integer> getParameterIndexes(final int tid) { List<Integer> ret = termParameterIndex.get(tid); if (ret == null) { ret = emptyList(); } return unmodifiableList(ret); }
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Returns the parameter indices for the provided term index. @param tid Term index @return The list of parameter indices, which may be empty
[ "Returns", "the", "parameter", "indices", "for", "the", "provided", "term", "index", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/protonetwork/model/TermParameterMapTable.java#L118-L124
146,269
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/protonetwork/model/TermParameterMapTable.java
TermParameterMapTable.getNumberOfTermParameterMappings
public int getNumberOfTermParameterMappings() { int i = 0; for (final List<Integer> value : termParameterIndex.values()) i += value.size(); return i; }
java
public int getNumberOfTermParameterMappings() { int i = 0; for (final List<Integer> value : termParameterIndex.values()) i += value.size(); return i; }
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Returns the number of term-parameter mappings @return int
[ "Returns", "the", "number", "of", "term", "-", "parameter", "mappings" ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/protonetwork/model/TermParameterMapTable.java#L140-L145
146,270
Danny02/JOpenCTM
src/main/java/darwin/jopenctm/io/CtmInputStream.java
CtmInputStream.readLittleInt
public int readLittleInt() throws IOException { int ch1 = read(); int ch2 = read(); int ch3 = read(); int ch4 = read(); if ((ch1 | ch2 | ch3 | ch4) < 0) { throw new EOFException(); } return (ch1 + (ch2 << 8) + (ch3 << 16) + (ch4 << 24)); }
java
public int readLittleInt() throws IOException { int ch1 = read(); int ch2 = read(); int ch3 = read(); int ch4 = read(); if ((ch1 | ch2 | ch3 | ch4) < 0) { throw new EOFException(); } return (ch1 + (ch2 << 8) + (ch3 << 16) + (ch4 << 24)); }
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reads a single integer value, in little endian order @return read integer value @throws IOException see {@link InputStream#read()}
[ "reads", "a", "single", "integer", "value", "in", "little", "endian", "order" ]
c55a2a2d166a55979190f1bb08214fc84c93008f
https://github.com/Danny02/JOpenCTM/blob/c55a2a2d166a55979190f1bb08214fc84c93008f/src/main/java/darwin/jopenctm/io/CtmInputStream.java#L55-L64
146,271
geomajas/geomajas-project-client-gwt2
plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/map/mapcontrolpanel/MapControlPanelPresenterImpl.java
MapControlPanelPresenterImpl.addLayer
protected boolean addLayer(Layer layer) { int index = getLayerIndex(layer); if (index < 0) { view.add(new LayerControlPanel(mapPresenter, layer, disableToggleOutOfRange)); return true; } return false; }
java
protected boolean addLayer(Layer layer) { int index = getLayerIndex(layer); if (index < 0) { view.add(new LayerControlPanel(mapPresenter, layer, disableToggleOutOfRange)); return true; } return false; }
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Add a layer to the legend drop down panel. @param layer The layer who's legend to add to the drop down panel. @return success or not.
[ "Add", "a", "layer", "to", "the", "legend", "drop", "down", "panel", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/map/mapcontrolpanel/MapControlPanelPresenterImpl.java#L65-L73
146,272
geomajas/geomajas-project-client-gwt2
plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/map/mapcontrolpanel/MapControlPanelPresenterImpl.java
MapControlPanelPresenterImpl.removeLayer
protected boolean removeLayer(Layer layer) { int index = getLayerIndex(layer); if (index >= 0) { //contentPanel.remove(index); view.removeWidget(index); return true; } return false; }
java
protected boolean removeLayer(Layer layer) { int index = getLayerIndex(layer); if (index >= 0) { //contentPanel.remove(index); view.removeWidget(index); return true; } return false; }
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Remove a layer from the drop down content panel again. @param layer The layer to remove. @return success or not.
[ "Remove", "a", "layer", "from", "the", "drop", "down", "content", "panel", "again", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/corewidget/corewidget/src/main/java/org/geomajas/gwt2/plugin/corewidget/client/map/mapcontrolpanel/MapControlPanelPresenterImpl.java#L82-L91
146,273
astrapi69/jaulp-wicket
jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/deregistration/DeregistrationPanel.java
DeregistrationPanel.newMotivation
protected LabeledTextAreaPanel<String, DeregistrationModelBean> newMotivation(final String id, final IModel<DeregistrationModelBean> model) { final IModel<String> labelModel = ResourceModelFactory.newResourceModel( ResourceBundleKey.builder().key("sem.main.feedback.deregistration.user.label") .defaultValue("Please confirm the deregistration") .parameters(ListExtensions.toObjectArray(getDomainName())).build(), this); final IModel<String> placeholderModel = ResourceModelFactory.newResourceModel( "global.enter.your.deregistration.motivation.label", this, "Enter here your deregistration motivation."); final LabeledTextAreaPanel<String, DeregistrationModelBean> description = new LabeledTextAreaPanel<String, DeregistrationModelBean>( id, model, labelModel) { /** The Constant serialVersionUID. */ private static final long serialVersionUID = 1L; /** * {@inheritDoc} */ @Override protected TextArea<String> newTextArea(final String id, final IModel<DeregistrationModelBean> model) { final TextArea<String> textArea = super.newTextArea(id, model); if (placeholderModel != null) { textArea.add(new AttributeAppender("placeholder", placeholderModel)); } return textArea; } }; return description; }
java
protected LabeledTextAreaPanel<String, DeregistrationModelBean> newMotivation(final String id, final IModel<DeregistrationModelBean> model) { final IModel<String> labelModel = ResourceModelFactory.newResourceModel( ResourceBundleKey.builder().key("sem.main.feedback.deregistration.user.label") .defaultValue("Please confirm the deregistration") .parameters(ListExtensions.toObjectArray(getDomainName())).build(), this); final IModel<String> placeholderModel = ResourceModelFactory.newResourceModel( "global.enter.your.deregistration.motivation.label", this, "Enter here your deregistration motivation."); final LabeledTextAreaPanel<String, DeregistrationModelBean> description = new LabeledTextAreaPanel<String, DeregistrationModelBean>( id, model, labelModel) { /** The Constant serialVersionUID. */ private static final long serialVersionUID = 1L; /** * {@inheritDoc} */ @Override protected TextArea<String> newTextArea(final String id, final IModel<DeregistrationModelBean> model) { final TextArea<String> textArea = super.newTextArea(id, model); if (placeholderModel != null) { textArea.add(new AttributeAppender("placeholder", placeholderModel)); } return textArea; } }; return description; }
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Factory method for creating the LabeledTextAreaPanel. This method is invoked in the constructor from the derived classes and can be overridden so users can provide their own version of a Form. @param id the id @param model the model @return the form
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85d74368d00abd9bb97659b5794e38c0f8a013d4
https://github.com/astrapi69/jaulp-wicket/blob/85d74368d00abd9bb97659b5794e38c0f8a013d4/jaulp-wicket-components/src/main/java/de/alpharogroup/wicket/components/deregistration/DeregistrationPanel.java#L202-L235
146,274
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/cfg/SystemConfiguration.java
SystemConfiguration.createSystemConfiguration
public static synchronized SystemConfiguration createSystemConfiguration() throws IOException { if (self == null) { if (getenv(BELFRAMEWORK_HOME_ENV_VAR) == null) { String err = MISSING_SYSCFG; err = err.concat(": environment variable not set "); err = err.concat(BELFRAMEWORK_HOME_ENV_VAR); throw new IOException(err); } self = new SystemConfiguration(); } return self; }
java
public static synchronized SystemConfiguration createSystemConfiguration() throws IOException { if (self == null) { if (getenv(BELFRAMEWORK_HOME_ENV_VAR) == null) { String err = MISSING_SYSCFG; err = err.concat(": environment variable not set "); err = err.concat(BELFRAMEWORK_HOME_ENV_VAR); throw new IOException(err); } self = new SystemConfiguration(); } return self; }
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Creates the system configuration as defined by the environment. @return {@link SystemConfiguration} @throws IOException Thrown if an I/O error occurs
[ "Creates", "the", "system", "configuration", "as", "defined", "by", "the", "environment", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/cfg/SystemConfiguration.java#L215-L227
146,275
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/cfg/SystemConfiguration.java
SystemConfiguration.main
public static void main(String... args) { final String cfgpath = "../docs/configuration/belframework.cfg"; final File cfgfile = new File(cfgpath); try { SystemConfiguration syscfg = createSystemConfiguration(cfgfile); out.println(syscfg.defaultConfiguration()); } catch (IOException e) { e.printStackTrace(); } }
java
public static void main(String... args) { final String cfgpath = "../docs/configuration/belframework.cfg"; final File cfgfile = new File(cfgpath); try { SystemConfiguration syscfg = createSystemConfiguration(cfgfile); out.println(syscfg.defaultConfiguration()); } catch (IOException e) { e.printStackTrace(); } }
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Prints the default system configuration. @param args Ignored command-line arguments
[ "Prints", "the", "default", "system", "configuration", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/cfg/SystemConfiguration.java#L581-L590
146,276
geomajas/geomajas-project-client-gwt2
server-extension/src/main/java/org/geomajas/gwt2/client/controller/FeatureSelectionController.java
FeatureSelectionController.searchAtLocation
private void searchAtLocation(Coordinate location, boolean isShift) { Geometry point = new Geometry(Geometry.POINT, 0, -1); point.setCoordinates(new Coordinate[] { location }); GeomajasServerExtension .getInstance() .getServerFeatureService() .search(mapPresenter, point, pixelsToUnits(pixelTolerance), QueryType.INTERSECTS, searchLayerType, -1, new SelectionCallback(isShift, false)); }
java
private void searchAtLocation(Coordinate location, boolean isShift) { Geometry point = new Geometry(Geometry.POINT, 0, -1); point.setCoordinates(new Coordinate[] { location }); GeomajasServerExtension .getInstance() .getServerFeatureService() .search(mapPresenter, point, pixelsToUnits(pixelTolerance), QueryType.INTERSECTS, searchLayerType, -1, new SelectionCallback(isShift, false)); }
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Search for features at a certain location. @param location The location to check. @param isShift Is the shift button pressed down?
[ "Search", "for", "features", "at", "a", "certain", "location", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/server-extension/src/main/java/org/geomajas/gwt2/client/controller/FeatureSelectionController.java#L275-L284
146,277
geomajas/geomajas-project-client-gwt2
server-extension/src/main/java/org/geomajas/gwt2/client/controller/FeatureSelectionController.java
FeatureSelectionController.pixelsToUnits
private double pixelsToUnits(int pixels) { Coordinate c1 = mapPresenter.getViewPort().getTransformationService() .transform(new Coordinate(0, 0), RenderSpace.SCREEN, RenderSpace.WORLD); Coordinate c2 = mapPresenter.getViewPort().getTransformationService() .transform(new Coordinate(pixels, 0), RenderSpace.SCREEN, RenderSpace.WORLD); return MathService.distance(c1, c2); }
java
private double pixelsToUnits(int pixels) { Coordinate c1 = mapPresenter.getViewPort().getTransformationService() .transform(new Coordinate(0, 0), RenderSpace.SCREEN, RenderSpace.WORLD); Coordinate c2 = mapPresenter.getViewPort().getTransformationService() .transform(new Coordinate(pixels, 0), RenderSpace.SCREEN, RenderSpace.WORLD); return MathService.distance(c1, c2); }
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Transform a pixel-length into a real-life distance expressed in map CRS. This depends on the current map scale. @param pixels The number of pixels to calculate the distance for. @return The distance the given number of pixels entails.
[ "Transform", "a", "pixel", "-", "length", "into", "a", "real", "-", "life", "distance", "expressed", "in", "map", "CRS", ".", "This", "depends", "on", "the", "current", "map", "scale", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/server-extension/src/main/java/org/geomajas/gwt2/client/controller/FeatureSelectionController.java#L293-L299
146,278
ihaolin/session
session-api/src/main/java/me/hao0/session/util/PropertiesReader.java
PropertiesReader.read
public static final Properties read(String classpath) throws IOException{ final URL url = Resources.getResource(classpath); final ByteSource byteSource = Resources.asByteSource(url); final Properties properties = new Properties(); InputStream inputStream = null; try { inputStream = byteSource.openBufferedStream(); properties.load(inputStream); } catch (final IOException ioException) { ioException.printStackTrace(); } finally { if (inputStream != null) { try { inputStream.close(); } catch (final IOException ioException) { throw ioException; } } } return properties; }
java
public static final Properties read(String classpath) throws IOException{ final URL url = Resources.getResource(classpath); final ByteSource byteSource = Resources.asByteSource(url); final Properties properties = new Properties(); InputStream inputStream = null; try { inputStream = byteSource.openBufferedStream(); properties.load(inputStream); } catch (final IOException ioException) { ioException.printStackTrace(); } finally { if (inputStream != null) { try { inputStream.close(); } catch (final IOException ioException) { throw ioException; } } } return properties; }
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read properties from classpath @param classpath properties file classpath @return Properties object @throws java.io.IOException
[ "read", "properties", "from", "classpath" ]
322c3a9f47b305a39345135fa8163dd7e065b4f8
https://github.com/ihaolin/session/blob/322c3a9f47b305a39345135fa8163dd7e065b4f8/session-api/src/main/java/me/hao0/session/util/PropertiesReader.java#L21-L41
146,279
geomajas/geomajas-project-client-gwt2
impl/src/main/java/org/geomajas/gwt2/client/controller/ZoomToRectangleController.java
ZoomToRectangleController.execute
public void execute(Bbox worldBounds) { View endView = mapPresenter.getViewPort().asView(worldBounds, ZoomOption.LEVEL_CLOSEST); mapPresenter.getViewPort().registerAnimation(NavigationAnimationFactory.createZoomIn(mapPresenter, endView)); }
java
public void execute(Bbox worldBounds) { View endView = mapPresenter.getViewPort().asView(worldBounds, ZoomOption.LEVEL_CLOSEST); mapPresenter.getViewPort().registerAnimation(NavigationAnimationFactory.createZoomIn(mapPresenter, endView)); }
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Effectively zoom to the bounds that the user drew on the map. @param worldBounds The result of the user's dragging on the map, expressed in world space.
[ "Effectively", "zoom", "to", "the", "bounds", "that", "the", "user", "drew", "on", "the", "map", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/impl/src/main/java/org/geomajas/gwt2/client/controller/ZoomToRectangleController.java#L32-L35
146,280
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/features/XMLFeatureDescriptor.java
XMLFeatureDescriptor.setWindow
public static void setWindow(final TrainingParameters params) { if (leftWindow == -1 || rightWindow == -1) { leftWindow = getWindowRange(params).get(0); rightWindow = getWindowRange(params).get(1); } }
java
public static void setWindow(final TrainingParameters params) { if (leftWindow == -1 || rightWindow == -1) { leftWindow = getWindowRange(params).get(0); rightWindow = getWindowRange(params).get(1); } }
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Set the window length from the training parameters file. @param params the properties file
[ "Set", "the", "window", "length", "from", "the", "training", "parameters", "file", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/features/XMLFeatureDescriptor.java#L545-L550
146,281
ixa-ehu/ixa-pipe-ml
src/main/java/eus/ixa/ixa/pipe/ml/features/XMLFeatureDescriptor.java
XMLFeatureDescriptor.getWindowRange
private static List<Integer> getWindowRange(final TrainingParameters params) { final List<Integer> windowRange = new ArrayList<Integer>(); final String windowParam = Flags.getWindow(params); final String[] windowArray = windowParam.split("[ :-]"); if (windowArray.length == 2) { windowRange.add(Integer.parseInt(windowArray[0])); windowRange.add(Integer.parseInt(windowArray[1])); } return windowRange; }
java
private static List<Integer> getWindowRange(final TrainingParameters params) { final List<Integer> windowRange = new ArrayList<Integer>(); final String windowParam = Flags.getWindow(params); final String[] windowArray = windowParam.split("[ :-]"); if (windowArray.length == 2) { windowRange.add(Integer.parseInt(windowArray[0])); windowRange.add(Integer.parseInt(windowArray[1])); } return windowRange; }
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Get the window range feature. @param params the training parameters @return the list containing the left and right window values
[ "Get", "the", "window", "range", "feature", "." ]
c817fa1e40e96ed15fc79d22c3a7c25f1a40d172
https://github.com/ixa-ehu/ixa-pipe-ml/blob/c817fa1e40e96ed15fc79d22c3a7c25f1a40d172/src/main/java/eus/ixa/ixa/pipe/ml/features/XMLFeatureDescriptor.java#L559-L568
146,282
maxschuster/Vaadin-SignatureField
vaadin-signaturefield/src/main/java/eu/maxschuster/vaadin/signaturefield/SignatureField.java
SignatureField.initExtension
private SignatureFieldExtension initExtension() { SignatureFieldExtension ext = new SignatureFieldExtension(this); ext.addSignatureChangeListener(new SignatureFieldExtension.SignatureChangeListener() { private static final long serialVersionUID = 1L; @Override public void signatureChange(SignatureFieldExtension.SignatureChangeEvent event) { changingVariables = true; try { setValue(event.getSignature(), true); } finally { changingVariables = false; } } }); return ext; }
java
private SignatureFieldExtension initExtension() { SignatureFieldExtension ext = new SignatureFieldExtension(this); ext.addSignatureChangeListener(new SignatureFieldExtension.SignatureChangeListener() { private static final long serialVersionUID = 1L; @Override public void signatureChange(SignatureFieldExtension.SignatureChangeEvent event) { changingVariables = true; try { setValue(event.getSignature(), true); } finally { changingVariables = false; } } }); return ext; }
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Creates the javascript extension used to communicate with the client-side. @return The extension of this field
[ "Creates", "the", "javascript", "extension", "used", "to", "communicate", "with", "the", "client", "-", "side", "." ]
b6f6b7042ea9c46060af54bd92d21770abfcccee
https://github.com/maxschuster/Vaadin-SignatureField/blob/b6f6b7042ea9c46060af54bd92d21770abfcccee/vaadin-signaturefield/src/main/java/eu/maxschuster/vaadin/signaturefield/SignatureField.java#L143-L160
146,283
maxschuster/Vaadin-SignatureField
vaadin-signaturefield/src/main/java/eu/maxschuster/vaadin/signaturefield/SignatureField.java
SignatureField.setInternalValue
protected void setInternalValue(String newValue, boolean repaintIsNotNeeded) { super.setInternalValue(newValue); extension.setSignature(newValue, changingVariables || repaintIsNotNeeded); }
java
protected void setInternalValue(String newValue, boolean repaintIsNotNeeded) { super.setInternalValue(newValue); extension.setSignature(newValue, changingVariables || repaintIsNotNeeded); }
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Sets the internal field value. May sends the value to the client-side. @param newValue the new value to be set. @param repaintIsNotNeeded the new value should not be send to the client-side
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b6f6b7042ea9c46060af54bd92d21770abfcccee
https://github.com/maxschuster/Vaadin-SignatureField/blob/b6f6b7042ea9c46060af54bd92d21770abfcccee/vaadin-signaturefield/src/main/java/eu/maxschuster/vaadin/signaturefield/SignatureField.java#L205-L208
146,284
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/providers/googledrive/RemotePath.java
RemotePath.getDeepestFolderId
public String getDeepestFolderId() { if ( filesChain.isEmpty() ) { return "root"; } JSONObject last = filesChain.getLast(); if ( GoogleDrive.MIME_TYPE_DIRECTORY.equals( last.getString( "mimeType" ) ) ) { return last.getString( "id" ); } // If last is a blob, we return the parent id : if ( filesChain.size() == 1 ) { return "root"; } return filesChain.get( filesChain.size() - 2 ).getString( "id" ); }
java
public String getDeepestFolderId() { if ( filesChain.isEmpty() ) { return "root"; } JSONObject last = filesChain.getLast(); if ( GoogleDrive.MIME_TYPE_DIRECTORY.equals( last.getString( "mimeType" ) ) ) { return last.getString( "id" ); } // If last is a blob, we return the parent id : if ( filesChain.size() == 1 ) { return "root"; } return filesChain.get( filesChain.size() - 2 ).getString( "id" ); }
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If this remote path does not exist, this is the last existing id, or 'root'. @return id of deepest folder in filesChain, or "root" if filesChain is empty @throws IllegalStateException if last segment is a blob
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20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/providers/googledrive/RemotePath.java#L73-L87
146,285
netheosgithub/pcs_api
java/src/main/java/net/netheos/pcsapi/oauth/OAuth2SessionManager.java
OAuth2SessionManager.fetchUserCredentials
UserCredentials fetchUserCredentials( String code ) { HttpPost post = new HttpPost( accessTokenUrl ); List<NameValuePair> parameters = new ArrayList<NameValuePair>(); parameters.add( new BasicNameValuePair( OAuth2.CLIENT_ID, appInfo.getAppId() ) ); parameters.add( new BasicNameValuePair( OAuth2.CLIENT_SECRET, appInfo.getAppSecret() ) ); parameters.add( new BasicNameValuePair( OAuth2.CODE, code ) ); parameters.add( new BasicNameValuePair( OAuth2.GRANT_TYPE, OAuth2.AUTHORIZATION_CODE ) ); if ( appInfo.getRedirectUrl() != null ) { parameters.add( new BasicNameValuePair( OAuth2.REDIRECT_URI, appInfo.getRedirectUrl() ) ); } try { post.setEntity( new UrlEncodedFormEntity( parameters, PcsUtils.UTF8.name() ) ); } catch ( UnsupportedEncodingException ex ) { throw new CStorageException( "Can't encode parameters", ex ); } HttpResponse response; try { response = httpClient.execute( post ); } catch ( IOException e ) { throw new CStorageException( "HTTP request while fetching token has failed", e ); } // FIXME check status code here final String json; try { json = EntityUtils.toString( response.getEntity(), PcsUtils.UTF8.name() ); } catch ( IOException e ) { throw new CStorageException( "Can't retrieve json string in HTTP response entity", e ); } LOGGER.debug( "fetchUserCredentials - json: {}", json ); Credentials credentials = Credentials.createFromJson( json ); userCredentials = new UserCredentials( appInfo, null, // userId is unknown yet credentials ); return userCredentials; }
java
UserCredentials fetchUserCredentials( String code ) { HttpPost post = new HttpPost( accessTokenUrl ); List<NameValuePair> parameters = new ArrayList<NameValuePair>(); parameters.add( new BasicNameValuePair( OAuth2.CLIENT_ID, appInfo.getAppId() ) ); parameters.add( new BasicNameValuePair( OAuth2.CLIENT_SECRET, appInfo.getAppSecret() ) ); parameters.add( new BasicNameValuePair( OAuth2.CODE, code ) ); parameters.add( new BasicNameValuePair( OAuth2.GRANT_TYPE, OAuth2.AUTHORIZATION_CODE ) ); if ( appInfo.getRedirectUrl() != null ) { parameters.add( new BasicNameValuePair( OAuth2.REDIRECT_URI, appInfo.getRedirectUrl() ) ); } try { post.setEntity( new UrlEncodedFormEntity( parameters, PcsUtils.UTF8.name() ) ); } catch ( UnsupportedEncodingException ex ) { throw new CStorageException( "Can't encode parameters", ex ); } HttpResponse response; try { response = httpClient.execute( post ); } catch ( IOException e ) { throw new CStorageException( "HTTP request while fetching token has failed", e ); } // FIXME check status code here final String json; try { json = EntityUtils.toString( response.getEntity(), PcsUtils.UTF8.name() ); } catch ( IOException e ) { throw new CStorageException( "Can't retrieve json string in HTTP response entity", e ); } LOGGER.debug( "fetchUserCredentials - json: {}", json ); Credentials credentials = Credentials.createFromJson( json ); userCredentials = new UserCredentials( appInfo, null, // userId is unknown yet credentials ); return userCredentials; }
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Fetches user credentials @param code oauth2 OTP code @return The user credentials (without userId)
[ "Fetches", "user", "credentials" ]
20691e52e144014f99ca75cb7dedc7ba0c18586c
https://github.com/netheosgithub/pcs_api/blob/20691e52e144014f99ca75cb7dedc7ba0c18586c/java/src/main/java/net/netheos/pcsapi/oauth/OAuth2SessionManager.java#L198-L242
146,286
Danny02/JOpenCTM
src/main/java/darwin/jopenctm/compression/CommonAlgorithms.java
CommonAlgorithms.restoreVertices
public static float[] restoreVertices(int[] intVertices, int[] gridIndices, Grid grid, float vertexPrecision) { int ve = CTM_POSITION_ELEMENT_COUNT; int vc = intVertices.length / ve; int prevGridIndex = 0x7fffffff; int prevDeltaX = 0; float[] vertices = new float[vc * ve]; for (int i = 0; i < vc; ++i) { // Get grid box origin int gridIdx = gridIndices[i]; float[] gridOrigin = gridIdxToPoint(grid, gridIdx); // Restore original point int deltaX = intVertices[i * ve]; if (gridIdx == prevGridIndex) { deltaX += prevDeltaX; } vertices[i * ve] = vertexPrecision * deltaX + gridOrigin[0]; vertices[i * ve + 1] = vertexPrecision * intVertices[i * ve + 1] + gridOrigin[1]; vertices[i * ve + 2] = vertexPrecision * intVertices[i * ve + 2] + gridOrigin[2]; prevGridIndex = gridIdx; prevDeltaX = deltaX; } return vertices; }
java
public static float[] restoreVertices(int[] intVertices, int[] gridIndices, Grid grid, float vertexPrecision) { int ve = CTM_POSITION_ELEMENT_COUNT; int vc = intVertices.length / ve; int prevGridIndex = 0x7fffffff; int prevDeltaX = 0; float[] vertices = new float[vc * ve]; for (int i = 0; i < vc; ++i) { // Get grid box origin int gridIdx = gridIndices[i]; float[] gridOrigin = gridIdxToPoint(grid, gridIdx); // Restore original point int deltaX = intVertices[i * ve]; if (gridIdx == prevGridIndex) { deltaX += prevDeltaX; } vertices[i * ve] = vertexPrecision * deltaX + gridOrigin[0]; vertices[i * ve + 1] = vertexPrecision * intVertices[i * ve + 1] + gridOrigin[1]; vertices[i * ve + 2] = vertexPrecision * intVertices[i * ve + 2] + gridOrigin[2]; prevGridIndex = gridIdx; prevDeltaX = deltaX; } return vertices; }
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Calculate inverse derivatives of the vertices. @param intVertices encoded vertices @param gridIndices index of the used index @param grid grid definition @param vertexPrecision used encoding precision @return the restored vertices
[ "Calculate", "inverse", "derivatives", "of", "the", "vertices", "." ]
c55a2a2d166a55979190f1bb08214fc84c93008f
https://github.com/Danny02/JOpenCTM/blob/c55a2a2d166a55979190f1bb08214fc84c93008f/src/main/java/darwin/jopenctm/compression/CommonAlgorithms.java#L43-L68
146,287
Danny02/JOpenCTM
src/main/java/darwin/jopenctm/compression/CommonAlgorithms.java
CommonAlgorithms.gridIdxToPoint
public static float[] gridIdxToPoint(Grid grid, int idx) { int[] gridIdx = new int[3]; int ydiv = grid.getDivision().getX(); int zdiv = ydiv * grid.getDivision().getY(); gridIdx[2] = idx / zdiv; idx -= gridIdx[2] * zdiv; gridIdx[1] = idx / ydiv; idx -= gridIdx[1] * ydiv; gridIdx[0] = idx; Vec3f size = grid.getSize(); float[] point = { gridIdx[0] * size.getX() + grid.getMin().getX(), gridIdx[1] * size.getY() + grid.getMin().getY(), gridIdx[2] * size.getZ() + grid.getMin().getZ() }; return point; }
java
public static float[] gridIdxToPoint(Grid grid, int idx) { int[] gridIdx = new int[3]; int ydiv = grid.getDivision().getX(); int zdiv = ydiv * grid.getDivision().getY(); gridIdx[2] = idx / zdiv; idx -= gridIdx[2] * zdiv; gridIdx[1] = idx / ydiv; idx -= gridIdx[1] * ydiv; gridIdx[0] = idx; Vec3f size = grid.getSize(); float[] point = { gridIdx[0] * size.getX() + grid.getMin().getX(), gridIdx[1] * size.getY() + grid.getMin().getY(), gridIdx[2] * size.getZ() + grid.getMin().getZ() }; return point; }
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Convert a grid index to a point. @param grid gird box definition @param idx box id @return the min x/y/z for the given grid box (an array with size of 3)
[ "Convert", "a", "grid", "index", "to", "a", "point", "." ]
c55a2a2d166a55979190f1bb08214fc84c93008f
https://github.com/Danny02/JOpenCTM/blob/c55a2a2d166a55979190f1bb08214fc84c93008f/src/main/java/darwin/jopenctm/compression/CommonAlgorithms.java#L77-L96
146,288
geomajas/geomajas-project-client-gwt2
plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java
TmsClient.createLocalMap
public MapConfiguration createLocalMap(String crs, CrsType type, Bbox bounds, int minTileSize, int nrOfZoomLevels) { MapConfiguration mapConfiguration = createTmsMap(crs, type, bounds, minTileSize, nrOfZoomLevels); mapConfiguration.setHintValue(PROFILE, Profile.LOCAL); return mapConfiguration; }
java
public MapConfiguration createLocalMap(String crs, CrsType type, Bbox bounds, int minTileSize, int nrOfZoomLevels) { MapConfiguration mapConfiguration = createTmsMap(crs, type, bounds, minTileSize, nrOfZoomLevels); mapConfiguration.setHintValue(PROFILE, Profile.LOCAL); return mapConfiguration; }
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Create a map configuration with a local profile. @return
[ "Create", "a", "map", "configuration", "with", "a", "local", "profile", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java#L156-L160
146,289
geomajas/geomajas-project-client-gwt2
plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java
TmsClient.createLayer
public TmsLayer createLayer(String id, TileConfiguration tileConfiguration, TmsLayerConfiguration layerConfiguration) { return new TmsLayer(id, tileConfiguration, layerConfiguration); }
java
public TmsLayer createLayer(String id, TileConfiguration tileConfiguration, TmsLayerConfiguration layerConfiguration) { return new TmsLayer(id, tileConfiguration, layerConfiguration); }
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Create a new TMS layer instance. @param id The unique layer ID. @param tileConfiguration The tile configuration object. @param layerConfiguration The layer configuration object. @return A new TMS layer.
[ "Create", "a", "new", "TMS", "layer", "instance", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java#L171-L174
146,290
geomajas/geomajas-project-client-gwt2
plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java
TmsClient.getTileMapService
public void getTileMapService(final String baseUrl, final Callback<TileMapServiceInfo, String> callback) { RequestBuilder builder = new RequestBuilder(RequestBuilder.GET, baseUrl); builder.setHeader("Cache-Control", "no-cache"); builder.setHeader("Pragma", "no-cache"); try { builder.sendRequest(null, new RequestCallback() { public void onError(Request request, Throwable e) { callback.onFailure(e.getMessage()); } public void onResponseReceived(Request request, Response response) { if (200 == response.getStatusCode()) { Document messageDom = XMLParser.parse(response.getText()); callback.onSuccess(new TileMapServiceInfo100(messageDom.getDocumentElement())); } else { callback.onFailure(response.getText()); } } }); } catch (RequestException e) { // Couldn't connect to server callback.onFailure(e.getMessage()); } }
java
public void getTileMapService(final String baseUrl, final Callback<TileMapServiceInfo, String> callback) { RequestBuilder builder = new RequestBuilder(RequestBuilder.GET, baseUrl); builder.setHeader("Cache-Control", "no-cache"); builder.setHeader("Pragma", "no-cache"); try { builder.sendRequest(null, new RequestCallback() { public void onError(Request request, Throwable e) { callback.onFailure(e.getMessage()); } public void onResponseReceived(Request request, Response response) { if (200 == response.getStatusCode()) { Document messageDom = XMLParser.parse(response.getText()); callback.onSuccess(new TileMapServiceInfo100(messageDom.getDocumentElement())); } else { callback.onFailure(response.getText()); } } }); } catch (RequestException e) { // Couldn't connect to server callback.onFailure(e.getMessage()); } }
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Fetch the capabilities of a TileMapService and parse it. This is the base URL that contains a list of TileMaps. @param baseUrl The URL that points to the TileMapService. @param callback The callback tat contains the parsed capabilities as a {@link org.geomajas.gwt2.plugin.tms.client .configuration.TileMapServiceInfo} object.
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bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java#L218-L242
146,291
geomajas/geomajas-project-client-gwt2
plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java
TmsClient.createTmsMap
protected MapConfiguration createTmsMap(String crs, CrsType type, Bbox bounds, int minTileSize, int nrOfZoomLevels) { MapConfigurationImpl mapConfiguration; mapConfiguration = new MapConfigurationImpl(); mapConfiguration.setCrs(crs, type); double minSize = bounds.getWidth() >= bounds.getHeight() ? bounds.getHeight() : bounds.getWidth(); List<Double> resolutions = new ArrayList<Double>(); for (int i = 0; i < nrOfZoomLevels; i++) { resolutions.add(minSize / (minTileSize * Math.pow(2, i))); } mapConfiguration.setResolutions(resolutions); mapConfiguration.setMaxBounds(Bbox.ALL); mapConfiguration.setHintValue(MapConfiguration.INITIAL_BOUNDS, bounds); return mapConfiguration; }
java
protected MapConfiguration createTmsMap(String crs, CrsType type, Bbox bounds, int minTileSize, int nrOfZoomLevels) { MapConfigurationImpl mapConfiguration; mapConfiguration = new MapConfigurationImpl(); mapConfiguration.setCrs(crs, type); double minSize = bounds.getWidth() >= bounds.getHeight() ? bounds.getHeight() : bounds.getWidth(); List<Double> resolutions = new ArrayList<Double>(); for (int i = 0; i < nrOfZoomLevels; i++) { resolutions.add(minSize / (minTileSize * Math.pow(2, i))); } mapConfiguration.setResolutions(resolutions); mapConfiguration.setMaxBounds(Bbox.ALL); mapConfiguration.setHintValue(MapConfiguration.INITIAL_BOUNDS, bounds); return mapConfiguration; }
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Create a map with a local profile and specified crs, bounds and number of zoom levels. The resolution at level 0 is based on mapping the bounds to a rectangular tile width minimum width and height of minTileSize pixels. @param crs @param type @param bounds @param minTileSize @param nrOfZoomLevels @return
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bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/plugin/tms/tms/src/main/java/org/geomajas/gwt2/plugin/tms/client/TmsClient.java#L314-L328
146,292
geomajas/geomajas-project-client-gwt2
server-extension/src/main/java/org/geomajas/gwt2/client/map/layer/RasterServerLayerImpl.java
RasterServerLayerImpl.setOpacity
public void setOpacity(double opacity) { getLayerInfo().setStyle(Double.toString(opacity)); renderer.setOpacity(opacity); }
java
public void setOpacity(double opacity) { getLayerInfo().setStyle(Double.toString(opacity)); renderer.setOpacity(opacity); }
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Apply a new opacity on the entire raster layer. Changing the opacity on a layer does NOT fire a layer style changed event. @param opacity The new opacity value. Must be a value between 0 and 1, where 0 means invisible and 1 is totally visible.
[ "Apply", "a", "new", "opacity", "on", "the", "entire", "raster", "layer", ".", "Changing", "the", "opacity", "on", "a", "layer", "does", "NOT", "fire", "a", "layer", "style", "changed", "event", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/server-extension/src/main/java/org/geomajas/gwt2/client/map/layer/RasterServerLayerImpl.java#L65-L68
146,293
ops4j/org.ops4j.pax.exam1
pax-exam-container-default/src/main/java/org/ops4j/pax/exam/container/def/options/ScannerUtils.java
ScannerUtils.getOptions
static String getOptions( final ProvisionOption provision ) { final StringBuilder options = new StringBuilder(); if( provision.shouldUpdate() ) { options.append( SEPARATOR_OPTION ).append( OPTION_UPDATE ); } if( !provision.shouldStart() ) { options.append( SEPARATOR_OPTION ).append( OPTION_NO_START ); } if( provision.getStartLevel() != null ) { options.append( SEPARATOR_OPTION ).append( provision.getStartLevel() ); } return options.toString(); }
java
static String getOptions( final ProvisionOption provision ) { final StringBuilder options = new StringBuilder(); if( provision.shouldUpdate() ) { options.append( SEPARATOR_OPTION ).append( OPTION_UPDATE ); } if( !provision.shouldStart() ) { options.append( SEPARATOR_OPTION ).append( OPTION_NO_START ); } if( provision.getStartLevel() != null ) { options.append( SEPARATOR_OPTION ).append( provision.getStartLevel() ); } return options.toString(); }
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Returns common scanner options. Ment to be used by subclasses when building the url. @param provision provision options to be used (cannot be null) @return common scanner options (cannot be null)
[ "Returns", "common", "scanner", "options", ".", "Ment", "to", "be", "used", "by", "subclasses", "when", "building", "the", "url", "." ]
7c8742208117ff91bd24bcd3a185d2d019f7000f
https://github.com/ops4j/org.ops4j.pax.exam1/blob/7c8742208117ff91bd24bcd3a185d2d019f7000f/pax-exam-container-default/src/main/java/org/ops4j/pax/exam/container/def/options/ScannerUtils.java#L47-L63
146,294
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java
BELUtilities.asPath
public static String asPath(final String... strings) { if (strings == null) return null; final StringBuilder bldr = new StringBuilder(); for (final String string : strings) { if (bldr.length() != 0) bldr.append(separator); bldr.append(string); } return bldr.toString(); }
java
public static String asPath(final String... strings) { if (strings == null) return null; final StringBuilder bldr = new StringBuilder(); for (final String string : strings) { if (bldr.length() != 0) bldr.append(separator); bldr.append(string); } return bldr.toString(); }
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Inserts the platform-specific filesystem path separator between the provided strings. @param strings @return String in the following form: {@code strings[0]<path_separator>strings[1]<path_separator>...<strings[n]>} , or <b>null</b> if {@code strings} is null
[ "Inserts", "the", "platform", "-", "specific", "filesystem", "path", "separator", "between", "the", "provided", "strings", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java#L136-L144
146,295
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java
BELUtilities.createDirectories
public static void createDirectories(final String directory) { if (directory == null) return; final File f = new File(directory); if (!f.isDirectory()) { if (!f.mkdirs()) throw new RuntimeException("couldn't create " + directory); } }
java
public static void createDirectories(final String directory) { if (directory == null) return; final File f = new File(directory); if (!f.isDirectory()) { if (!f.mkdirs()) throw new RuntimeException("couldn't create " + directory); } }
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Create the provided directory, and all necessary subdirectories, if they do not already exist. @param directory Path to create @throws RuntimeException Thrown if directory creation failed
[ "Create", "the", "provided", "directory", "and", "all", "necessary", "subdirectories", "if", "they", "do", "not", "already", "exist", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java#L402-L409
146,296
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java
BELUtilities.createDirectory
public static void createDirectory(final String directory) { if (directory == null) return; final File f = new File(directory); if (!f.isDirectory()) { if (!f.mkdir()) throw new RuntimeException("couldn't create " + directory); } }
java
public static void createDirectory(final String directory) { if (directory == null) return; final File f = new File(directory); if (!f.isDirectory()) { if (!f.mkdir()) throw new RuntimeException("couldn't create " + directory); } }
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Create the provided directory, if it does not already exist. @param directory Path to create @throws RuntimeException Thrown if directory creation failed
[ "Create", "the", "provided", "directory", "if", "it", "does", "not", "already", "exist", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java#L417-L424
146,297
OpenBEL/openbel-framework
org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java
BELUtilities.getPID
public static int getPID() { if (pid == -1) { RuntimeMXBean mx = ManagementFactory.getRuntimeMXBean(); String name = mx.getName(); String token = name.split("@")[0]; pid = parseInt(token); } return pid; }
java
public static int getPID() { if (pid == -1) { RuntimeMXBean mx = ManagementFactory.getRuntimeMXBean(); String name = mx.getName(); String token = name.split("@")[0]; pid = parseInt(token); } return pid; }
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Returns the virtual machine's process identifier. @return {@code int}
[ "Returns", "the", "virtual", "machine", "s", "process", "identifier", "." ]
149f80b1d6eabb15ab15815b6f745b0afa9fd2d3
https://github.com/OpenBEL/openbel-framework/blob/149f80b1d6eabb15ab15815b6f745b0afa9fd2d3/org.openbel.framework.common/src/main/java/org/openbel/framework/common/BELUtilities.java#L608-L616
146,298
geomajas/geomajas-project-client-gwt2
common-gwt/command/src/main/java/org/geomajas/gwt/client/util/StyleUtil.java
StyleUtil.createStyle
public static UserStyleInfo createStyle(RuleInfo rule) { UserStyleInfo userStyleInfo = new UserStyleInfo(); FeatureTypeStyleInfo fts = new FeatureTypeStyleInfo(); fts.getRuleList().add(rule); userStyleInfo.getFeatureTypeStyleList().add(fts); return userStyleInfo; }
java
public static UserStyleInfo createStyle(RuleInfo rule) { UserStyleInfo userStyleInfo = new UserStyleInfo(); FeatureTypeStyleInfo fts = new FeatureTypeStyleInfo(); fts.getRuleList().add(rule); userStyleInfo.getFeatureTypeStyleList().add(fts); return userStyleInfo; }
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Create a style with a single rule. @param rule rule @return the style
[ "Create", "a", "style", "with", "a", "single", "rule", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/common-gwt/command/src/main/java/org/geomajas/gwt/client/util/StyleUtil.java#L60-L66
146,299
geomajas/geomajas-project-client-gwt2
common-gwt/command/src/main/java/org/geomajas/gwt/client/util/StyleUtil.java
StyleUtil.createRule
public static RuleInfo createRule(LayerType type, FeatureStyleInfo featureStyle) { SymbolizerTypeInfo symbolizer = createSymbolizer(type, featureStyle); RuleInfo rule = createRule(featureStyle.getName(), featureStyle.getName(), symbolizer); return rule; }
java
public static RuleInfo createRule(LayerType type, FeatureStyleInfo featureStyle) { SymbolizerTypeInfo symbolizer = createSymbolizer(type, featureStyle); RuleInfo rule = createRule(featureStyle.getName(), featureStyle.getName(), symbolizer); return rule; }
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Create a non-filtered rule from a feature style. @param type the layer type @param featureStyle the style @return the rule
[ "Create", "a", "non", "-", "filtered", "rule", "from", "a", "feature", "style", "." ]
bd8d7904e861fa80522eed7b83c4ea99844180c7
https://github.com/geomajas/geomajas-project-client-gwt2/blob/bd8d7904e861fa80522eed7b83c4ea99844180c7/common-gwt/command/src/main/java/org/geomajas/gwt/client/util/StyleUtil.java#L75-L79