id int32 0 165k | repo stringlengths 7 58 | path stringlengths 12 218 | func_name stringlengths 3 140 | original_string stringlengths 73 34.1k | language stringclasses 1 value | code stringlengths 73 34.1k | code_tokens list | docstring stringlengths 3 16k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 105 339 |
|---|---|---|---|---|---|---|---|---|---|---|---|
137,600 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/ENU.java | ENU.convertEnvelopeFromWgsToEnu | public Envelope convertEnvelopeFromWgsToEnu( Envelope envelopeWgs ) {
Polygon polygonEnu = GeometryUtilities.createPolygonFromEnvelope(envelopeWgs);
convertGeometryFromWgsToEnu(polygonEnu);
Envelope envelopeEnu = polygonEnu.getEnvelopeInternal();
return envelopeEnu;
} | java | public Envelope convertEnvelopeFromWgsToEnu( Envelope envelopeWgs ) {
Polygon polygonEnu = GeometryUtilities.createPolygonFromEnvelope(envelopeWgs);
convertGeometryFromWgsToEnu(polygonEnu);
Envelope envelopeEnu = polygonEnu.getEnvelopeInternal();
return envelopeEnu;
} | [
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@param envelopeWgs
@return the converted envelope. | [
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137,601 | TheHortonMachine/hortonmachine | apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java | NwwPanel.goTo | public synchronized Position goTo( Double lon, Double lat, Double elev, Double azimuth, boolean animate ) {
View view = getWwd().getView();
view.stopAnimations();
view.stopMovement();
Position eyePosition;
if (lon == null || lat == null) {
Position currentEyePosition = wwd.getView().getCurrentEyePosition();
if (currentEyePosition != null) {
lat = currentEyePosition.latitude.degrees;
lon = currentEyePosition.longitude.degrees;
} else {
return null;
}
}
if (elev == null) {
// use the current
elev = wwd.getView().getCurrentEyePosition().getAltitude();
}
if (Double.isNaN(elev)) {
if (!Double.isNaN(lastElevation)) {
elev = lastElevation;
} else {
elev = NwwUtilities.DEFAULT_ELEV;
}
}
eyePosition = NwwUtilities.toPosition(lat, lon, elev);
if (animate) {
view.goTo(eyePosition, elev);
} else {
view.setEyePosition(eyePosition);
}
if (azimuth != null) {
Angle heading = Angle.fromDegrees(azimuth);
view.setHeading(heading);
}
lastElevation = elev;
return eyePosition;
} | java | public synchronized Position goTo( Double lon, Double lat, Double elev, Double azimuth, boolean animate ) {
View view = getWwd().getView();
view.stopAnimations();
view.stopMovement();
Position eyePosition;
if (lon == null || lat == null) {
Position currentEyePosition = wwd.getView().getCurrentEyePosition();
if (currentEyePosition != null) {
lat = currentEyePosition.latitude.degrees;
lon = currentEyePosition.longitude.degrees;
} else {
return null;
}
}
if (elev == null) {
// use the current
elev = wwd.getView().getCurrentEyePosition().getAltitude();
}
if (Double.isNaN(elev)) {
if (!Double.isNaN(lastElevation)) {
elev = lastElevation;
} else {
elev = NwwUtilities.DEFAULT_ELEV;
}
}
eyePosition = NwwUtilities.toPosition(lat, lon, elev);
if (animate) {
view.goTo(eyePosition, elev);
} else {
view.setEyePosition(eyePosition);
}
if (azimuth != null) {
Angle heading = Angle.fromDegrees(azimuth);
view.setHeading(heading);
}
lastElevation = elev;
return eyePosition;
} | [
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@param lon
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@param lat
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@param elev
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@param azimuth
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@param animate
if <code>true</code>, it animates to the position. | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java#L208-L247 |
137,602 | TheHortonMachine/hortonmachine | apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java | NwwPanel.goTo | public void goTo( Sector sector, boolean animate ) {
View view = getWwd().getView();
view.stopAnimations();
view.stopMovement();
if (sector == null) {
return;
}
// Create a bounding box for the specified sector in order to estimate
// its size in model coordinates.
Box extent = Sector.computeBoundingBox(getWwd().getModel().getGlobe(),
getWwd().getSceneController().getVerticalExaggeration(), sector);
// Estimate the distance between the center position and the eye
// position that is necessary to cause the sector to
// fill a viewport with the specified field of view. Note that we change
// the distance between the center and eye
// position here, and leave the field of view constant.
Angle fov = view.getFieldOfView();
double zoom = extent.getRadius() / fov.cosHalfAngle() / fov.tanHalfAngle();
// Configure OrbitView to look at the center of the sector from our
// estimated distance. This causes OrbitView to
// animate to the specified position over several seconds. To affect
// this change immediately use the following:
if (animate) {
view.goTo(new Position(sector.getCentroid(), 0d), zoom);
} else {
((OrbitView) wwd.getView()).setCenterPosition(new Position(sector.getCentroid(), 0d));
((OrbitView) wwd.getView()).setZoom(zoom);
}
} | java | public void goTo( Sector sector, boolean animate ) {
View view = getWwd().getView();
view.stopAnimations();
view.stopMovement();
if (sector == null) {
return;
}
// Create a bounding box for the specified sector in order to estimate
// its size in model coordinates.
Box extent = Sector.computeBoundingBox(getWwd().getModel().getGlobe(),
getWwd().getSceneController().getVerticalExaggeration(), sector);
// Estimate the distance between the center position and the eye
// position that is necessary to cause the sector to
// fill a viewport with the specified field of view. Note that we change
// the distance between the center and eye
// position here, and leave the field of view constant.
Angle fov = view.getFieldOfView();
double zoom = extent.getRadius() / fov.cosHalfAngle() / fov.tanHalfAngle();
// Configure OrbitView to look at the center of the sector from our
// estimated distance. This causes OrbitView to
// animate to the specified position over several seconds. To affect
// this change immediately use the following:
if (animate) {
view.goTo(new Position(sector.getCentroid(), 0d), zoom);
} else {
((OrbitView) wwd.getView()).setCenterPosition(new Position(sector.getCentroid(), 0d));
((OrbitView) wwd.getView()).setZoom(zoom);
}
} | [
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@param sector
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@param animate
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java#L257-L288 |
137,603 | TheHortonMachine/hortonmachine | apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java | NwwPanel.setFlatGlobe | public void setFlatGlobe( boolean doMercator ) {
EarthFlat globe = new EarthFlat();
globe.setElevationModel(new ZeroElevationModel());
wwd.getModel().setGlobe(globe);
wwd.getView().stopMovement();
GeographicProjection projection;
if (doMercator) {
projection = new ProjectionMercator();
} else {
projection = new ProjectionEquirectangular();
}
globe.setProjection(projection);
wwd.redraw();
} | java | public void setFlatGlobe( boolean doMercator ) {
EarthFlat globe = new EarthFlat();
globe.setElevationModel(new ZeroElevationModel());
wwd.getModel().setGlobe(globe);
wwd.getView().stopMovement();
GeographicProjection projection;
if (doMercator) {
projection = new ProjectionMercator();
} else {
projection = new ProjectionEquirectangular();
}
globe.setProjection(projection);
wwd.redraw();
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java#L296-L309 |
137,604 | TheHortonMachine/hortonmachine | apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java | NwwPanel.setSphereGlobe | public void setSphereGlobe() {
Earth globe = new Earth();
wwd.getModel().setGlobe(globe);
wwd.getView().stopMovement();
wwd.redraw();
} | java | public void setSphereGlobe() {
Earth globe = new Earth();
wwd.getModel().setGlobe(globe);
wwd.getView().stopMovement();
wwd.redraw();
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java#L314-L319 |
137,605 | TheHortonMachine/hortonmachine | apps/src/main/java/org/hortonmachine/nww/gui/NwwPanel.java | NwwPanel.setFlatSphereGlobe | public void setFlatSphereGlobe() {
Earth globe = new Earth();
globe.setElevationModel(new ZeroElevationModel());
wwd.getModel().setGlobe(globe);
wwd.getView().stopMovement();
wwd.redraw();
} | java | public void setFlatSphereGlobe() {
Earth globe = new Earth();
globe.setElevationModel(new ZeroElevationModel());
wwd.getModel().setGlobe(globe);
wwd.getView().stopMovement();
wwd.redraw();
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137,606 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/log/LogDb.java | LogDb.getFilteredList | public List<Message> getFilteredList( EMessageType messageType, Long fromTsMillis, Long toTsMillis, long limit )
throws Exception {
String tableName = TABLE_MESSAGES;
String sql = "select " + getQueryFieldsString() + " from " + tableName;
List<String> wheresList = new ArrayList<>();
if (messageType != null && messageType != EMessageType.ALL) {
String where = type_NAME + "=" + messageType.getCode();
wheresList.add(where);
}
if (fromTsMillis != null) {
String where = TimeStamp_NAME + ">" + fromTsMillis;
wheresList.add(where);
}
if (toTsMillis != null) {
String where = TimeStamp_NAME + "<" + toTsMillis;
wheresList.add(where);
}
if (wheresList.size() > 0) {
sql += " WHERE ";
for( int i = 0; i < wheresList.size(); i++ ) {
if (i > 0) {
sql += " AND ";
}
sql += wheresList.get(i);
}
}
sql += " order by " + ID_NAME + " desc";
if (limit > 0) {
sql += " limit " + limit;
}
String _sql = sql;
List<Message> messages = new ArrayList<Message>();
logDb.execOnConnection(connection -> {
try (IHMStatement stmt = connection.createStatement(); IHMResultSet rs = stmt.executeQuery(_sql);) {
while( rs.next() ) {
Message event = resultSetToItem(rs);
messages.add(event);
}
}
return null;
});
return messages;
} | java | public List<Message> getFilteredList( EMessageType messageType, Long fromTsMillis, Long toTsMillis, long limit )
throws Exception {
String tableName = TABLE_MESSAGES;
String sql = "select " + getQueryFieldsString() + " from " + tableName;
List<String> wheresList = new ArrayList<>();
if (messageType != null && messageType != EMessageType.ALL) {
String where = type_NAME + "=" + messageType.getCode();
wheresList.add(where);
}
if (fromTsMillis != null) {
String where = TimeStamp_NAME + ">" + fromTsMillis;
wheresList.add(where);
}
if (toTsMillis != null) {
String where = TimeStamp_NAME + "<" + toTsMillis;
wheresList.add(where);
}
if (wheresList.size() > 0) {
sql += " WHERE ";
for( int i = 0; i < wheresList.size(); i++ ) {
if (i > 0) {
sql += " AND ";
}
sql += wheresList.get(i);
}
}
sql += " order by " + ID_NAME + " desc";
if (limit > 0) {
sql += " limit " + limit;
}
String _sql = sql;
List<Message> messages = new ArrayList<Message>();
logDb.execOnConnection(connection -> {
try (IHMStatement stmt = connection.createStatement(); IHMResultSet rs = stmt.executeQuery(_sql);) {
while( rs.next() ) {
Message event = resultSetToItem(rs);
messages.add(event);
}
}
return null;
});
return messages;
} | [
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@param toTsMillis the end time in millis.
@param limit the max number of messages.
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@throws Exception | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/org/hortonmachine/dbs/log/LogDb.java#L249-L295 |
137,607 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/ngmf/util/WildcardFileFilter.java | WildcardFileFilter.accept | @Override
public boolean accept(File file) {
String name = file.getName();
if (FilenameUtils.wildcardMatch(name, wildcards, caseSensitivity)) {
return true;
}
return false;
} | java | @Override
public boolean accept(File file) {
String name = file.getName();
if (FilenameUtils.wildcardMatch(name, wildcards, caseSensitivity)) {
return true;
}
return false;
} | [
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137,608 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgAttribute | public SimpleFeature convertDwgAttribute( String typeName, String layerName,
DwgAttrib attribute, int id ) {
Point2D pto = attribute.getInsertionPoint();
Coordinate coord = new Coordinate(pto.getX(), pto.getY(), attribute.getElevation());
String textString = attribute.getText();
return createPointTextFeature(typeName, layerName, id, coord, textString);
} | java | public SimpleFeature convertDwgAttribute( String typeName, String layerName,
DwgAttrib attribute, int id ) {
Point2D pto = attribute.getInsertionPoint();
Coordinate coord = new Coordinate(pto.getX(), pto.getY(), attribute.getElevation());
String textString = attribute.getText();
return createPointTextFeature(typeName, layerName, id, coord, textString);
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137,609 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgPolyline2D | public SimpleFeature convertDwgPolyline2D( String typeName, String layerName,
DwgPolyline2D polyline2d, int id ) {
Point2D[] ptos = polyline2d.getPts();
CoordinateList coordList = new CoordinateList();
if (ptos != null) {
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
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b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, LineString.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry lineString = gF.createLineString(coordList.toCoordinateArray());
Object[] values = new Object[]{lineString, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
}
return null;
} | java | public SimpleFeature convertDwgPolyline2D( String typeName, String layerName,
DwgPolyline2D polyline2d, int id ) {
Point2D[] ptos = polyline2d.getPts();
CoordinateList coordList = new CoordinateList();
if (ptos != null) {
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, LineString.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry lineString = gF.createLineString(coordList.toCoordinateArray());
Object[] values = new Object[]{lineString, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
}
return null;
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137,610 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgPoint | public SimpleFeature convertDwgPoint( String typeName, String layerName, DwgPoint point, int id ) {
double[] p = point.getPoint();
Point2D pto = new Point2D.Double(p[0], p[1]);
CoordinateList coordList = new CoordinateList();
Coordinate coord = new Coordinate(pto.getX(), pto.getY(), 0.0);
coordList.add(coord);
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, MultiPoint.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry points = gF.createMultiPoint(coordList.toCoordinateArray());
Object[] values = new Object[]{points, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
} | java | public SimpleFeature convertDwgPoint( String typeName, String layerName, DwgPoint point, int id ) {
double[] p = point.getPoint();
Point2D pto = new Point2D.Double(p[0], p[1]);
CoordinateList coordList = new CoordinateList();
Coordinate coord = new Coordinate(pto.getX(), pto.getY(), 0.0);
coordList.add(coord);
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, MultiPoint.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry points = gF.createMultiPoint(coordList.toCoordinateArray());
Object[] values = new Object[]{points, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
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137,611 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgLine | public SimpleFeature convertDwgLine( String typeName, String layerName, DwgLine line, int id ) {
double[] p1 = line.getP1();
double[] p2 = line.getP2();
Point2D[] ptos = new Point2D[]{new Point2D.Double(p1[0], p1[1]),
new Point2D.Double(p2[0], p2[1])};
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, LineString.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry lineString = gF.createLineString(coordList.toCoordinateArray());
Object[] values = new Object[]{lineString, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
} | java | public SimpleFeature convertDwgLine( String typeName, String layerName, DwgLine line, int id ) {
double[] p1 = line.getP1();
double[] p2 = line.getP2();
Point2D[] ptos = new Point2D[]{new Point2D.Double(p1[0], p1[1]),
new Point2D.Double(p2[0], p2[1])};
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, LineString.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry lineString = gF.createLineString(coordList.toCoordinateArray());
Object[] values = new Object[]{lineString, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java#L230-L252 |
137,612 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgCircle | public SimpleFeature convertDwgCircle( String typeName, String layerName, DwgCircle circle,
int id ) {
double[] center = circle.getCenter();
double radius = circle.getRadius();
Point2D[] ptos = GisModelCurveCalculator.calculateGisModelCircle(new Point2D.Double(
center[0], center[1]), radius);
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
// close to create a polygon
if ((ptos[ptos.length - 1].getX() != ptos[0].getX())
|| (ptos[ptos.length - 1].getY() != ptos[0].getY())) {
Coordinate coord = new Coordinate(ptos[0].getX(), ptos[0].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, Polygon.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
LinearRing linearRing = gF.createLinearRing(coordList.toCoordinateArray());
Geometry polygon = gF.createPolygon(linearRing, null);
Object[] values = new Object[]{polygon, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
} | java | public SimpleFeature convertDwgCircle( String typeName, String layerName, DwgCircle circle,
int id ) {
double[] center = circle.getCenter();
double radius = circle.getRadius();
Point2D[] ptos = GisModelCurveCalculator.calculateGisModelCircle(new Point2D.Double(
center[0], center[1]), radius);
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
// close to create a polygon
if ((ptos[ptos.length - 1].getX() != ptos[0].getX())
|| (ptos[ptos.length - 1].getY() != ptos[0].getY())) {
Coordinate coord = new Coordinate(ptos[0].getX(), ptos[0].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, Polygon.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
LinearRing linearRing = gF.createLinearRing(coordList.toCoordinateArray());
Geometry polygon = gF.createPolygon(linearRing, null);
Object[] values = new Object[]{polygon, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java#L258-L288 |
137,613 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgSolid | public SimpleFeature convertDwgSolid( String typeName, String layerName, DwgSolid solid, int id ) {
double[] p1 = solid.getCorner1();
double[] p2 = solid.getCorner2();
double[] p3 = solid.getCorner3();
double[] p4 = solid.getCorner4();
Point2D[] ptos = new Point2D[]{new Point2D.Double(p1[0], p1[1]),
new Point2D.Double(p2[0], p2[1]), new Point2D.Double(p3[0], p3[1]),
new Point2D.Double(p4[0], p4[1])};
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY());
coordList.add(coord);
}
coordList.closeRing();
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, Polygon.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
LinearRing linearRing = gF.createLinearRing(coordList.toCoordinateArray());
Geometry polygon = gF.createPolygon(linearRing, null);
Object[] values = new Object[]{polygon, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
} | java | public SimpleFeature convertDwgSolid( String typeName, String layerName, DwgSolid solid, int id ) {
double[] p1 = solid.getCorner1();
double[] p2 = solid.getCorner2();
double[] p3 = solid.getCorner3();
double[] p4 = solid.getCorner4();
Point2D[] ptos = new Point2D[]{new Point2D.Double(p1[0], p1[1]),
new Point2D.Double(p2[0], p2[1]), new Point2D.Double(p3[0], p3[1]),
new Point2D.Double(p4[0], p4[1])};
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY());
coordList.add(coord);
}
coordList.closeRing();
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, Polygon.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
LinearRing linearRing = gF.createLinearRing(coordList.toCoordinateArray());
Geometry polygon = gF.createPolygon(linearRing, null);
Object[] values = new Object[]{polygon, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java#L294-L321 |
137,614 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java | GeometryTranslator.convertDwgArc | public SimpleFeature convertDwgArc( String typeName, String layerName, DwgArc arc, int id ) {
double[] c = arc.getCenter();
Point2D center = new Point2D.Double(c[0], c[1]);
double radius = (arc).getRadius();
double initAngle = Math.toDegrees((arc).getInitAngle());
double endAngle = Math.toDegrees((arc).getEndAngle());
Point2D[] ptos = GisModelCurveCalculator.calculateGisModelArc(center, radius, initAngle,
endAngle);
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, LineString.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry lineString = gF.createLineString(coordList.toCoordinateArray());
Object[] values = new Object[]{lineString, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
} | java | public SimpleFeature convertDwgArc( String typeName, String layerName, DwgArc arc, int id ) {
double[] c = arc.getCenter();
Point2D center = new Point2D.Double(c[0], c[1]);
double radius = (arc).getRadius();
double initAngle = Math.toDegrees((arc).getInitAngle());
double endAngle = Math.toDegrees((arc).getEndAngle());
Point2D[] ptos = GisModelCurveCalculator.calculateGisModelArc(center, radius, initAngle,
endAngle);
CoordinateList coordList = new CoordinateList();
for( int j = 0; j < ptos.length; j++ ) {
Coordinate coord = new Coordinate(ptos[j].getX(), ptos[j].getY(), 0.0);
coordList.add(coord);
}
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName(typeName);
b.setCRS(crs);
b.add(THE_GEOM, LineString.class);
b.add(LAYER, String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
Geometry lineString = gF.createLineString(coordList.toCoordinateArray());
Object[] values = new Object[]{lineString, layerName};
builder.addAll(values);
return builder.buildFeature(typeName + "." + id);
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/GeometryTranslator.java#L326-L351 |
137,615 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/util/Stats.java | Stats.norm_vec | public static double norm_vec(double x, double y, double z) {
return Math.sqrt(x * x + y * y + z * z);
} | java | public static double norm_vec(double x, double y, double z) {
return Math.sqrt(x * x + y * y + z * z);
} | [
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] | Normalized Vector. | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/oms3/util/Stats.java#L25-L27 |
137,616 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/util/Stats.java | Stats.lag1 | public static double lag1(double[] vals) {
double mean = mean(vals);
int size = vals.length;
double r1;
double q = 0;
double v = (vals[0] - mean) * (vals[0] - mean);
for (int i = 1; i < size; i++) {
double delta0 = (vals[i - 1] - mean);
double delta1 = (vals[i] - mean);
q += (delta0 * delta1 - q) / (i + 1);
v += (delta1 * delta1 - v) / (i + 1);
}
r1 = q / v;
return r1;
} | java | public static double lag1(double[] vals) {
double mean = mean(vals);
int size = vals.length;
double r1;
double q = 0;
double v = (vals[0] - mean) * (vals[0] - mean);
for (int i = 1; i < size; i++) {
double delta0 = (vals[i - 1] - mean);
double delta1 = (vals[i] - mean);
q += (delta0 * delta1 - q) / (i + 1);
v += (delta1 * delta1 - v) / (i + 1);
}
r1 = q / v;
return r1;
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/oms3/util/Stats.java#L143-L157 |
137,617 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/util/Stats.java | Stats.round | public static double round(double val, int places) {
long factor = (long) Math.pow(10, places);
// Shift the decimal the correct number of places
// to the right.
val = val * factor;
// Round to the nearest integer.
long tmp = Math.round(val);
// Shift the decimal the correct number of places
// back to the left.
return (double) tmp / factor;
} | java | public static double round(double val, int places) {
long factor = (long) Math.pow(10, places);
// Shift the decimal the correct number of places
// to the right.
val = val * factor;
// Round to the nearest integer.
long tmp = Math.round(val);
// Shift the decimal the correct number of places
// back to the left.
return (double) tmp / factor;
} | [
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137,618 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/util/Stats.java | Stats.random | public static double random(double min, double max) {
assert max > min;
return min + Math.random() * (max - min);
} | java | public static double random(double min, double max) {
assert max > min;
return min + Math.random() * (max - min);
} | [
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137,619 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/grasslegacy/io/GrassRasterWriter.java | GrassRasterWriter.checkStructure | private boolean checkStructure() {
File ds;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CATS + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELL + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELL_MISC + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELL_MISC + File.separator + name);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.FCELL + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELLHD + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.COLR + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.HIST + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
return true;
} | java | private boolean checkStructure() {
File ds;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CATS + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELL + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELL_MISC + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELL_MISC + File.separator + name);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.FCELL + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELLHD + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.COLR + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
ds = new File(mapsetPath + File.separator + GrassLegacyConstans.HIST + File.separator);
if (!ds.exists())
if (!ds.mkdir())
return false;
return true;
} | [
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] | check if the needed folders are there (they could be missing if the mapset has just been
created and this is the first file that gets into it
@return | [
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137,620 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/grasslegacy/io/GrassRasterWriter.java | GrassRasterWriter.createEmptyHeader | private boolean createEmptyHeader( String filePath, int rows ) {
try {
RandomAccessFile theCreatedFile = new RandomAccessFile(filePath, "rw");
rowaddresses = new long[rows + 1];
// the size of a long
theCreatedFile.write(4);
// write the addresses of the row begins. Since we don't know how
// much
// they will be compressed, they will be filled after the
// compression
for( int i = 0; i < rows + 1; i++ ) {
theCreatedFile.writeInt(0);
}
pointerInFilePosition = theCreatedFile.getFilePointer();
rowaddresses[0] = pointerInFilePosition;
theCreatedFile.close();
} catch (Exception e) {
e.printStackTrace();
return false;
}
return true;
} | java | private boolean createEmptyHeader( String filePath, int rows ) {
try {
RandomAccessFile theCreatedFile = new RandomAccessFile(filePath, "rw");
rowaddresses = new long[rows + 1];
// the size of a long
theCreatedFile.write(4);
// write the addresses of the row begins. Since we don't know how
// much
// they will be compressed, they will be filled after the
// compression
for( int i = 0; i < rows + 1; i++ ) {
theCreatedFile.writeInt(0);
}
pointerInFilePosition = theCreatedFile.getFilePointer();
rowaddresses[0] = pointerInFilePosition;
theCreatedFile.close();
} catch (Exception e) {
e.printStackTrace();
return false;
}
return true;
} | [
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@param filePath
@param rows
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137,621 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/grasslegacy/io/GrassRasterWriter.java | GrassRasterWriter.createCellhd | private void createCellhd( int chproj, int chzone, double chn, double chs, double che, double chw, int chcols, int chrows,
double chnsres, double chewres, int chformat, int chcompressed ) throws Exception {
StringBuffer data = new StringBuffer(512);
data.append("proj: " + chproj + "\n").append("zone: " + chzone + "\n").append("north: " + chn + "\n")
.append("south: " + chs + "\n").append("east: " + che + "\n").append("west: " + chw + "\n")
.append("cols: " + chcols + "\n").append("rows: " + chrows + "\n").append("n-s resol: " + chnsres + "\n")
.append("e-w resol: " + chewres + "\n").append("format: " + chformat + "\n")
.append("compressed: " + chcompressed);
File ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELLHD + File.separator + name);
OutputStreamWriter windFile = new OutputStreamWriter(new FileOutputStream(ds));
windFile.write(data.toString());
windFile.close();
} | java | private void createCellhd( int chproj, int chzone, double chn, double chs, double che, double chw, int chcols, int chrows,
double chnsres, double chewres, int chformat, int chcompressed ) throws Exception {
StringBuffer data = new StringBuffer(512);
data.append("proj: " + chproj + "\n").append("zone: " + chzone + "\n").append("north: " + chn + "\n")
.append("south: " + chs + "\n").append("east: " + che + "\n").append("west: " + chw + "\n")
.append("cols: " + chcols + "\n").append("rows: " + chrows + "\n").append("n-s resol: " + chnsres + "\n")
.append("e-w resol: " + chewres + "\n").append("format: " + chformat + "\n")
.append("compressed: " + chcompressed);
File ds = new File(mapsetPath + File.separator + GrassLegacyConstans.CELLHD + File.separator + name);
OutputStreamWriter windFile = new OutputStreamWriter(new FileOutputStream(ds));
windFile.write(data.toString());
windFile.close();
} | [
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137,622 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/grasslegacy/io/CompressesRasterWriter.java | CompressesRasterWriter.compressAndWriteObj | public boolean compressAndWriteObj( RandomAccessFile theCreatedFile, RandomAccessFile theCreatedNullFile, Object dataObject )
throws RasterWritingFailureException {
if (dataObject instanceof double[][]) {
compressAndWrite(theCreatedFile, theCreatedNullFile, (double[][]) dataObject);
} else {
throw new RasterWritingFailureException("Raster type not supported.");
} | java | public boolean compressAndWriteObj( RandomAccessFile theCreatedFile, RandomAccessFile theCreatedNullFile, Object dataObject )
throws RasterWritingFailureException {
if (dataObject instanceof double[][]) {
compressAndWrite(theCreatedFile, theCreatedNullFile, (double[][]) dataObject);
} else {
throw new RasterWritingFailureException("Raster type not supported.");
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137,623 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/style/sld/StyleHandler.java | StyleHandler.getStyle | public String getStyle(StyleType type, Color color, String colorName, String layerName) {
throw new UnsupportedOperationException();
} | java | public String getStyle(StyleType type, Color color, String colorName, String layerName) {
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137,624 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/style/sld/StyleHandler.java | StyleHandler.toReader | protected Reader toReader(Object input) throws IOException {
if (input instanceof Reader) {
return (Reader) input;
}
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return new InputStreamReader((InputStream) input);
}
if (input instanceof String) {
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}
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return new InputStreamReader(((URL) input).openStream());
}
if (input instanceof File) {
return new FileReader((File) input);
}
throw new IllegalArgumentException("Unable to turn " + input + " into reader");
} | java | protected Reader toReader(Object input) throws IOException {
if (input instanceof Reader) {
return (Reader) input;
}
if (input instanceof InputStream) {
return new InputStreamReader((InputStream) input);
}
if (input instanceof String) {
return new StringReader((String) input);
}
if (input instanceof URL) {
return new InputStreamReader(((URL) input).openStream());
}
if (input instanceof File) {
return new FileReader((File) input);
}
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137,625 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/core/Las.java | Las.supportsNative | public static boolean supportsNative() {
if (!testedLibLoading) {
LiblasJNALibrary wrapper = LiblasWrapper.getWrapper();
if (wrapper != null) {
isNativeLibAvailable = true;
}
testedLibLoading = true;
}
return isNativeLibAvailable;
} | java | public static boolean supportsNative() {
if (!testedLibLoading) {
LiblasJNALibrary wrapper = LiblasWrapper.getWrapper();
if (wrapper != null) {
isNativeLibAvailable = true;
}
testedLibLoading = true;
}
return isNativeLibAvailable;
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137,626 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/core/Las.java | Las.getReader | public static ALasReader getReader( File lasFile, CoordinateReferenceSystem crs ) throws Exception {
if (supportsNative()) {
return new LiblasReader(lasFile, crs);
} else {
return new LasReaderBuffered(lasFile, crs);
}
} | java | public static ALasReader getReader( File lasFile, CoordinateReferenceSystem crs ) throws Exception {
if (supportsNative()) {
return new LiblasReader(lasFile, crs);
} else {
return new LasReaderBuffered(lasFile, crs);
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137,627 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/core/Las.java | Las.getWriter | public static ALasWriter getWriter( File lasFile, CoordinateReferenceSystem crs ) throws Exception {
if (supportsNative()) {
return new LiblasWriter(lasFile, crs);
} else {
return new LasWriterBuffered(lasFile, crs);
}
} | java | public static ALasWriter getWriter( File lasFile, CoordinateReferenceSystem crs ) throws Exception {
if (supportsNative()) {
return new LiblasWriter(lasFile, crs);
} else {
return new LasWriterBuffered(lasFile, crs);
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137,628 | TheHortonMachine/hortonmachine | apps/src/main/java/org/hortonmachine/database/tree/DatabaseTreeModel.java | DatabaseTreeModel.setRoot | public void setRoot( DbLevel v ) {
DbLevel oldRoot = v;
root = v;
fireTreeStructureChanged(oldRoot);
} | java | public void setRoot( DbLevel v ) {
DbLevel oldRoot = v;
root = v;
fireTreeStructureChanged(oldRoot);
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137,629 | TheHortonMachine/hortonmachine | gui/src/main/java/org/hortonmachine/gui/utils/monitor/ActionWithProgress.java | ActionWithProgress.onError | public void onError( Exception e ) {
e.printStackTrace();
String localizedMessage = e.getLocalizedMessage();
if (localizedMessage == null) {
localizedMessage = e.getMessage();
}
if (localizedMessage == null || localizedMessage.trim().length() == 0) {
localizedMessage = "An undefined error was thrown. Please send the below trace to your technical contact:\n";
localizedMessage += ExceptionUtils.getStackTrace(e);
}
String _localizedMessage = localizedMessage;
SwingUtilities.invokeLater(new Runnable(){
public void run() {
JOptionPane.showMessageDialog(parent, _localizedMessage, "ERROR", JOptionPane.ERROR_MESSAGE);
}
});
} | java | public void onError( Exception e ) {
e.printStackTrace();
String localizedMessage = e.getLocalizedMessage();
if (localizedMessage == null) {
localizedMessage = e.getMessage();
}
if (localizedMessage == null || localizedMessage.trim().length() == 0) {
localizedMessage = "An undefined error was thrown. Please send the below trace to your technical contact:\n";
localizedMessage += ExceptionUtils.getStackTrace(e);
}
String _localizedMessage = localizedMessage;
SwingUtilities.invokeLater(new Runnable(){
public void run() {
JOptionPane.showMessageDialog(parent, _localizedMessage, "ERROR", JOptionPane.ERROR_MESSAGE);
}
});
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137,630 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/network/hacklength/OmsHackLength.java | OmsHackLength.tcaMax | public static boolean tcaMax( FlowNode flowNode, RandomIter tcaIter, RandomIter hacklengthIter, double maxTca,
double maxDistance ) {
List<FlowNode> enteringNodes = flowNode.getEnteringNodes();
for( Node node : enteringNodes ) {
double tca = node.getValueFromMap(tcaIter);
if (tca >= maxTca) {
if (NumericsUtilities.dEq(tca, maxTca)) {
if (node.getValueFromMap(hacklengthIter) > maxDistance)
return false;
} else
return false;
}
}
return true;
} | java | public static boolean tcaMax( FlowNode flowNode, RandomIter tcaIter, RandomIter hacklengthIter, double maxTca,
double maxDistance ) {
List<FlowNode> enteringNodes = flowNode.getEnteringNodes();
for( Node node : enteringNodes ) {
double tca = node.getValueFromMap(tcaIter);
if (tca >= maxTca) {
if (NumericsUtilities.dEq(tca, maxTca)) {
if (node.getValueFromMap(hacklengthIter) > maxDistance)
return false;
} else
return false;
}
}
return true;
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137,631 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/SequenceEntryUtils.java | SequenceEntryUtils.isCircularBoundary | public static boolean isCircularBoundary(
CompoundLocation<Location> location, long sequenceLength) {
if (location.getLocations().size() == 1) {
return false;// cant be if there is only 1 location element
}
boolean lastLocation = false;
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lastLocation = true;
}
Long position = location.getLocations().get(i).getEndPosition();
if (position == sequenceLength && !lastLocation) {
return true;
}
}
return false;
} | java | public static boolean isCircularBoundary(
CompoundLocation<Location> location, long sequenceLength) {
if (location.getLocations().size() == 1) {
return false;// cant be if there is only 1 location element
}
boolean lastLocation = false;
List<Location> locationList = location.getLocations();
for (int i = 0; i < locationList.size(); i++) {
if (i == locationList.size() - 1) {
lastLocation = true;
}
Long position = location.getLocations().get(i).getEndPosition();
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}
}
return false;
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@param location
@param sequenceLength
@return | [
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137,632 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/SequenceEntryUtils.java | SequenceEntryUtils.deleteDeletedValueQualifiers | public static boolean deleteDeletedValueQualifiers(Feature feature, ArrayList<Qualifier> deleteQualifierList)
{
boolean deleted = false;
for (Qualifier qual : deleteQualifierList)
{
feature.removeQualifier(qual);
deleted = true;
}
return deleted;
} | java | public static boolean deleteDeletedValueQualifiers(Feature feature, ArrayList<Qualifier> deleteQualifierList)
{
boolean deleted = false;
for (Qualifier qual : deleteQualifierList)
{
feature.removeQualifier(qual);
deleted = true;
}
return deleted;
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137,633 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/SequenceEntryUtils.java | SequenceEntryUtils.deleteDuplicatedQualfiier | public static boolean deleteDuplicatedQualfiier(Feature feature, String qualifierName)
{
ArrayList<Qualifier> qualifiers = (ArrayList<Qualifier>) feature.getQualifiers(qualifierName);
Set<String> qualifierValueSet = new HashSet<String>();
for (Qualifier qual : qualifiers)
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if (qual.getValue() != null)
{
if (!qualifierValueSet.add(qual.getValue()))
{
feature.removeQualifier(qual);
return true;
}
}
}
return false;
} | java | public static boolean deleteDuplicatedQualfiier(Feature feature, String qualifierName)
{
ArrayList<Qualifier> qualifiers = (ArrayList<Qualifier>) feature.getQualifiers(qualifierName);
Set<String> qualifierValueSet = new HashSet<String>();
for (Qualifier qual : qualifiers)
{
if (qual.getValue() != null)
{
if (!qualifierValueSet.add(qual.getValue()))
{
feature.removeQualifier(qual);
return true;
}
}
}
return false;
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137,634 | TheHortonMachine/hortonmachine | gui/src/main/java/org/hortonmachine/gui/utils/ImageCache.java | ImageCache.getImage | public ImageIcon getImage( String key ) {
ImageIcon image = imageMap.get(key);
if (image == null) {
image = createImage(key);
imageMap.put(key, image);
}
return image;
} | java | public ImageIcon getImage( String key ) {
ImageIcon image = imageMap.get(key);
if (image == null) {
image = createImage(key);
imageMap.put(key, image);
}
return image;
} | [
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@param key
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137,635 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/SldUtilities.java | SldUtilities.getStyleFromFile | public static Style getStyleFromFile( File file ) {
Style style = null;
try {
String name = file.getName();
if (!name.endsWith("sld")) {
String nameWithoutExtention = FileUtilities.getNameWithoutExtention(file);
File sldFile = new File(file.getParentFile(), nameWithoutExtention + ".sld");
if (sldFile.exists()) {
file = sldFile;
} else {
// no style file here
return null;
}
}
SLDHandler h = new SLDHandler();
StyledLayerDescriptor sld = h.parse(file, null, null, null);
// SLDParser stylereader = new SLDParser(sf, file);
// StyledLayerDescriptor sld = stylereader.parseSLD();
style = getDefaultStyle(sld);
return style;
} catch (Exception e) {
e.printStackTrace();
return null;
}
} | java | public static Style getStyleFromFile( File file ) {
Style style = null;
try {
String name = file.getName();
if (!name.endsWith("sld")) {
String nameWithoutExtention = FileUtilities.getNameWithoutExtention(file);
File sldFile = new File(file.getParentFile(), nameWithoutExtention + ".sld");
if (sldFile.exists()) {
file = sldFile;
} else {
// no style file here
return null;
}
}
SLDHandler h = new SLDHandler();
StyledLayerDescriptor sld = h.parse(file, null, null, null);
// SLDParser stylereader = new SLDParser(sf, file);
// StyledLayerDescriptor sld = stylereader.parseSLD();
style = getDefaultStyle(sld);
return style;
} catch (Exception e) {
e.printStackTrace();
return null;
}
} | [
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@param file the SLD file or a companion file.
@return the {@link Style} object.
@throws IOException | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/utils/SldUtilities.java#L86-L111 |
137,636 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/SldUtilities.java | SldUtilities.genericizeftStyles | private static void genericizeftStyles( List<FeatureTypeStyle> ftStyles ) {
for( FeatureTypeStyle featureTypeStyle : ftStyles ) {
featureTypeStyle.featureTypeNames().clear();
featureTypeStyle.featureTypeNames().add(new NameImpl(GENERIC_FEATURE_TYPENAME));
}
} | java | private static void genericizeftStyles( List<FeatureTypeStyle> ftStyles ) {
for( FeatureTypeStyle featureTypeStyle : ftStyles ) {
featureTypeStyle.featureTypeNames().clear();
featureTypeStyle.featureTypeNames().add(new NameImpl(GENERIC_FEATURE_TYPENAME));
}
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137,637 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/SldUtilities.java | SldUtilities.colorWithoutAlpha | public static Color colorWithoutAlpha( Color color ) {
return new Color(color.getRed(), color.getGreen(), color.getBlue());
} | java | public static Color colorWithoutAlpha( Color color ) {
return new Color(color.getRed(), color.getGreen(), color.getBlue());
} | [
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137,638 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/SldUtilities.java | SldUtilities.colorWithAlpha | public static Color colorWithAlpha( Color color, int alpha ) {
return new Color(color.getRed(), color.getGreen(), color.getBlue(), alpha);
} | java | public static Color colorWithAlpha( Color color, int alpha ) {
return new Color(color.getRed(), color.getGreen(), color.getBlue(), alpha);
} | [
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137,639 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/template/TemplateInfo.java | TemplateInfo.getTokensAsMap | public Map<String, TemplateTokenInfo> getTokensAsMap() {
HashMap<String, TemplateTokenInfo> tokens = new HashMap<String, TemplateTokenInfo>();
for (TemplateTokenInfo tokenInfo : tokenInfos)
tokens.put(tokenInfo.getName(), tokenInfo);
return Collections.unmodifiableMap(tokens);
} | java | public Map<String, TemplateTokenInfo> getTokensAsMap() {
HashMap<String, TemplateTokenInfo> tokens = new HashMap<String, TemplateTokenInfo>();
for (TemplateTokenInfo tokenInfo : tokenInfos)
tokens.put(tokenInfo.getName(), tokenInfo);
return Collections.unmodifiableMap(tokens);
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137,640 | TheHortonMachine/hortonmachine | extras/sideprojects/gpextras/src/main/java/org/hortonmachine/gpextras/tiles/MapsforgeTilesGenerator.java | MapsforgeTilesGenerator.getTile4TileCoordinate | public <T> T getTile4TileCoordinate( final int tx, final int ty, int zoom, Class<T> adaptee ) throws IOException {
//System.out.println("https://tile.openstreetmap.org/" + zoom + "/" + tx + "/" + ty + ".png");
Tile tile = new Tile(tx, ty, (byte) zoom, tileSize);
RendererJob mapGeneratorJob = new RendererJob(tile, mapDataStore, renderTheme, displayModel, scaleFactor, false, false);
TileBitmap tb = renderer.executeJob(mapGeneratorJob);
if (!(tileCache instanceof InMemoryTileCache)) {
tileCache.put(mapGeneratorJob, tb);
}
if (tb instanceof AwtTileBitmap) {
AwtTileBitmap bmp = (AwtTileBitmap) tb;
if (bmp != null) {
BufferedImage bitmap = AwtGraphicFactory.getBitmap(bmp);
if (adaptee.isAssignableFrom(BufferedImage.class)) {
return adaptee.cast(bitmap);
} else if (adaptee.isAssignableFrom(byte[].class)) {
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ImageIO.write(bitmap, "png", baos);
baos.flush();
byte[] imageInByte = baos.toByteArray();
baos.close();
return adaptee.cast(imageInByte);
}
}
}
throw new RuntimeException("Can't handle tilebitmap of type -> " + tb.getClass());
} | java | public <T> T getTile4TileCoordinate( final int tx, final int ty, int zoom, Class<T> adaptee ) throws IOException {
//System.out.println("https://tile.openstreetmap.org/" + zoom + "/" + tx + "/" + ty + ".png");
Tile tile = new Tile(tx, ty, (byte) zoom, tileSize);
RendererJob mapGeneratorJob = new RendererJob(tile, mapDataStore, renderTheme, displayModel, scaleFactor, false, false);
TileBitmap tb = renderer.executeJob(mapGeneratorJob);
if (!(tileCache instanceof InMemoryTileCache)) {
tileCache.put(mapGeneratorJob, tb);
}
if (tb instanceof AwtTileBitmap) {
AwtTileBitmap bmp = (AwtTileBitmap) tb;
if (bmp != null) {
BufferedImage bitmap = AwtGraphicFactory.getBitmap(bmp);
if (adaptee.isAssignableFrom(BufferedImage.class)) {
return adaptee.cast(bitmap);
} else if (adaptee.isAssignableFrom(byte[].class)) {
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ImageIO.write(bitmap, "png", baos);
baos.flush();
byte[] imageInByte = baos.toByteArray();
baos.close();
return adaptee.cast(imageInByte);
}
}
}
throw new RuntimeException("Can't handle tilebitmap of type -> " + tb.getClass());
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137,641 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENopen | public void ENopen( String input, String report, String outputBin ) throws EpanetException {
int errcode = epanet.ENopen(input, report, outputBin);
checkError(errcode);
} | java | public void ENopen( String input, String report, String outputBin ) throws EpanetException {
int errcode = epanet.ENopen(input, report, outputBin);
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137,642 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENsaveinpfile | public void ENsaveinpfile( String fileName ) throws EpanetException {
int err = epanet.ENsaveinpfile(fileName);
checkError(err);
} | java | public void ENsaveinpfile( String fileName ) throws EpanetException {
int err = epanet.ENsaveinpfile(fileName);
checkError(err);
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137,643 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENsavehydfile | public void ENsavehydfile( String filePath ) throws EpanetException {
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checkError(err);
} | java | public void ENsavehydfile( String filePath ) throws EpanetException {
int err = epanet.ENsavehydfile(filePath);
checkError(err);
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137,644 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetcount | public int ENgetcount( Components countcode ) throws EpanetException {
int[] count = new int[1];
int error = epanet.ENgetcount(countcode.getCode(), count);
checkError(error);
return count[0];
} | java | public int ENgetcount( Components countcode ) throws EpanetException {
int[] count = new int[1];
int error = epanet.ENgetcount(countcode.getCode(), count);
checkError(error);
return count[0];
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137,645 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetoption | public float ENgetoption( OptionParameterCodes optionCode ) throws EpanetException {
float[] optionValue = new float[1];
int error = epanet.ENgetoption(optionCode.getCode(), optionValue);
checkError(error);
return optionValue[0];
} | java | public float ENgetoption( OptionParameterCodes optionCode ) throws EpanetException {
float[] optionValue = new float[1];
int error = epanet.ENgetoption(optionCode.getCode(), optionValue);
checkError(error);
return optionValue[0];
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137,646 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgettimeparam | public long ENgettimeparam( TimeParameterCodes timeParameterCode ) throws EpanetException {
long[] timeValue = new long[1];
int error = epanet.ENgettimeparam(timeParameterCode.getCode(), timeValue);
checkError(error);
return timeValue[0];
} | java | public long ENgettimeparam( TimeParameterCodes timeParameterCode ) throws EpanetException {
long[] timeValue = new long[1];
int error = epanet.ENgettimeparam(timeParameterCode.getCode(), timeValue);
checkError(error);
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137,647 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetpatternindex | public int ENgetpatternindex( String id ) throws EpanetException {
int[] index = new int[1];
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checkError(error);
return index[0];
} | java | public int ENgetpatternindex( String id ) throws EpanetException {
int[] index = new int[1];
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137,648 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetpatternvalue | public float ENgetpatternvalue( int index, int period ) throws EpanetException {
float[] value = new float[1];
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checkError(errcode);
return value[0];
} | java | public float ENgetpatternvalue( int index, int period ) throws EpanetException {
float[] value = new float[1];
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137,649 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetnodeindex | public int ENgetnodeindex( String id ) throws EpanetException {
int[] index = new int[1];
int error = epanet.ENgetnodeindex(id, index);
checkError(error);
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} | java | public int ENgetnodeindex( String id ) throws EpanetException {
int[] index = new int[1];
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137,650 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetnodetype | public NodeTypes ENgetnodetype( int index ) throws EpanetException {
int[] typecode = new int[1];
int error = epanet.ENgetnodetype(index, typecode);
checkError(error);
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return type;
} | java | public NodeTypes ENgetnodetype( int index ) throws EpanetException {
int[] typecode = new int[1];
int error = epanet.ENgetnodetype(index, typecode);
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137,651 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetlinkindex | public int ENgetlinkindex( String id ) throws EpanetException {
int[] index = new int[1];
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} | java | public int ENgetlinkindex( String id ) throws EpanetException {
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137,652 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetlinkid | public String ENgetlinkid( int index ) throws EpanetException {
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} | java | public String ENgetlinkid( int index ) throws EpanetException {
ByteBuffer bb = ByteBuffer.allocate(64);
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java#L521-L529 |
137,653 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetlinktype | public LinkTypes ENgetlinktype( int index ) throws EpanetException {
int[] typecode = new int[1];
int error = epanet.ENgetlinktype(index, typecode);
checkError(error);
LinkTypes type = LinkTypes.forCode(typecode[0]);
return type;
} | java | public LinkTypes ENgetlinktype( int index ) throws EpanetException {
int[] typecode = new int[1];
int error = epanet.ENgetlinktype(index, typecode);
checkError(error);
LinkTypes type = LinkTypes.forCode(typecode[0]);
return type;
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137,654 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetlinknodes | public int[] ENgetlinknodes( int index ) throws EpanetException {
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int[] to = new int[1];
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checkError(error);
return new int[]{from[0], to[0]};
} | java | public int[] ENgetlinknodes( int index ) throws EpanetException {
int[] from = new int[1];
int[] to = new int[1];
int error = epanet.ENgetlinknodes(index, from, to);
checkError(error);
return new int[]{from[0], to[0]};
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137,655 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetlinkvalue | public float[] ENgetlinkvalue( int index, LinkParameters param ) throws EpanetException {
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checkError(errcode);
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137,656 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENgetversion | public int ENgetversion() throws EpanetException {
int[] version = new int[0];
int errcode = epanet.ENgetversion(version);
checkError(errcode);
return version[0];
} | java | public int ENgetversion() throws EpanetException {
int[] version = new int[0];
int errcode = epanet.ENgetversion(version);
checkError(errcode);
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137,657 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENsetnodevalue | public void ENsetnodevalue( int index, NodeParameters nodeParameter, float value ) throws EpanetException {
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checkError(errcode);
} | java | public void ENsetnodevalue( int index, NodeParameters nodeParameter, float value ) throws EpanetException {
int errcode = epanet.ENsetnodevalue(index, nodeParameter.getCode(), value);
checkError(errcode);
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137,658 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENsetlinkvalue | public void ENsetlinkvalue( int index, LinkParameters linkParameter, float value ) throws EpanetException {
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checkError(errcode);
} | java | public void ENsetlinkvalue( int index, LinkParameters linkParameter, float value ) throws EpanetException {
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137,659 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENaddpattern | public void ENaddpattern( String id ) throws EpanetException {
int errcode = epanet.ENaddpattern(id);
checkError(errcode);
} | java | public void ENaddpattern( String id ) throws EpanetException {
int errcode = epanet.ENaddpattern(id);
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137,660 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENsettimeparam | public void ENsettimeparam( TimeParameterCodes code, Long timevalue ) throws EpanetException {
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} | java | public void ENsettimeparam( TimeParameterCodes code, Long timevalue ) throws EpanetException {
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137,661 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/epanet/core/EpanetWrapper.java | EpanetWrapper.ENsetoption | public void ENsetoption( OptionParameterCodes optionCode, float value ) throws EpanetException {
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checkError(errcode);
} | java | public void ENsetoption( OptionParameterCodes optionCode, float value ) throws EpanetException {
int errcode = epanet.ENsetoption(optionCode.getCode(), value);
checkError(errcode);
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137,662 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/ValidationException.java | ValidationException.error | public static ValidationException error(String messageKey,
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return new ValidationException(
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} | java | public static ValidationException error(String messageKey,
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137,663 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/ValidationException.java | ValidationException.warning | public static ValidationException warning(String messageKey,
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} | java | public static ValidationException warning(String messageKey,
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137,664 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/ValidationException.java | ValidationException.info | public static ValidationException info(String messageKey,
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137,665 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/flatfile/writer/FeatureWriter.java | FeatureWriter.writeFeatureLocation | protected void writeFeatureLocation(Writer writer) throws IOException {
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137,666 | enasequence/sequencetools | src/main/java/uk/ac/ebi/ena/xml/SimpleXmlWriter.java | SimpleXmlWriter.beginElement | public void beginElement(String elementName) throws IOException {
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137,667 | enasequence/sequencetools | src/main/java/uk/ac/ebi/ena/xml/SimpleXmlWriter.java | SimpleXmlWriter.openElement | public void openElement(String elementName) throws IOException {
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] | Writes '>\n'. | [
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] | 4127f5e1a17540239f5810136153fbd6737fa262 | https://github.com/enasequence/sequencetools/blob/4127f5e1a17540239f5810136153fbd6737fa262/src/main/java/uk/ac/ebi/ena/xml/SimpleXmlWriter.java#L208-L215 |
137,668 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/FieldAccess.java | FieldAccess.setData | @Override
public void setData(FieldContent data) {
// allow setting in field once only.
// cannot have multiple sources for one @In !
if (this.data != null) {
throw new ComponentException("Attempt to set @In field twice: " + comp + "." + field.getName());
}
this.data = data;
} | java | @Override
public void setData(FieldContent data) {
// allow setting in field once only.
// cannot have multiple sources for one @In !
if (this.data != null) {
throw new ComponentException("Attempt to set @In field twice: " + comp + "." + field.getName());
}
this.data = data;
} | [
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137,669 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/ngmf/util/cosu/MH.java | Transition.qobs | double qobs(int dummy, double[] xt) {
int x = (int) (xt[0]);
double p = Math.random();
double[] distr = accumP[x];
int i, left = 0, right = distr.length - 1;
// Find and return least i s.t. p <= distr[i]
while (left <= right) {
// Here distr[left-1] <= p <= distr[right+1]
i = (left + right) / 2;
if (p < distr[i]) {
right = i - 1;
} else if (distr[i] < p) {
left = i + 1;
} else {
return i;
}
}
// Now p <= distr[left]
return left;
} | java | double qobs(int dummy, double[] xt) {
int x = (int) (xt[0]);
double p = Math.random();
double[] distr = accumP[x];
int i, left = 0, right = distr.length - 1;
// Find and return least i s.t. p <= distr[i]
while (left <= right) {
// Here distr[left-1] <= p <= distr[right+1]
i = (left + right) / 2;
if (p < distr[i]) {
right = i - 1;
} else if (distr[i] < p) {
left = i + 1;
} else {
return i;
}
}
// Now p <= distr[left]
return left;
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/oms3/ngmf/util/cosu/MH.java#L426-L445 |
137,670 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/spatialite/SpatialiteWKBReader.java | SpatialiteWKBReader.hexToBytes | public static byte[] hexToBytes( String hex ) {
int byteLen = hex.length() / 2;
byte[] bytes = new byte[byteLen];
for( int i = 0; i < hex.length() / 2; i++ ) {
int i2 = 2 * i;
if (i2 + 1 > hex.length())
throw new IllegalArgumentException("Hex string has odd length");
int nib1 = hexToInt(hex.charAt(i2));
int nib0 = hexToInt(hex.charAt(i2 + 1));
byte b = (byte) ((nib1 << 4) + (byte) nib0);
bytes[i] = b;
}
return bytes;
} | java | public static byte[] hexToBytes( String hex ) {
int byteLen = hex.length() / 2;
byte[] bytes = new byte[byteLen];
for( int i = 0; i < hex.length() / 2; i++ ) {
int i2 = 2 * i;
if (i2 + 1 > hex.length())
throw new IllegalArgumentException("Hex string has odd length");
int nib1 = hexToInt(hex.charAt(i2));
int nib0 = hexToInt(hex.charAt(i2 + 1));
byte b = (byte) ((nib1 << 4) + (byte) nib0);
bytes[i] = b;
}
return bytes;
} | [
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The hexadecimal digit symbols are case-insensitive.
@param hex a string containing hex digits
@return an array of bytes with the value of the hex string | [
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137,671 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/spatialite/SpatialiteWKBReader.java | SpatialiteWKBReader.setSRID | private Geometry setSRID( Geometry g, int SRID ) {
if (SRID != 0)
g.setSRID(SRID);
return g;
} | java | private Geometry setSRID( Geometry g, int SRID ) {
if (SRID != 0)
g.setSRID(SRID);
return g;
} | [
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] | Sets the SRID, if it was specified in the WKB
@param g the geometry to update
@return the geometry with an updated SRID value, if required | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/org/hortonmachine/dbs/spatialite/SpatialiteWKBReader.java#L298-L302 |
137,672 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/spatialite/SpatialiteWKBReader.java | SpatialiteWKBReader.readCoordinate | private void readCoordinate() throws IOException {
for( int i = 0; i < inputDimension; i++ ) {
if (i <= 1) {
ordValues[i] = precisionModel.makePrecise(dis.readDouble());
} else {
ordValues[i] = dis.readDouble();
}
}
} | java | private void readCoordinate() throws IOException {
for( int i = 0; i < inputDimension; i++ ) {
if (i <= 1) {
ordValues[i] = precisionModel.makePrecise(dis.readDouble());
} else {
ordValues[i] = dis.readDouble();
}
}
} | [
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137,673 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/hydrogeomorphology/adige/core/HillSlope.java | HillSlope.connectElements | public static void connectElements( List<IHillSlope> elements ) {
Collections.sort(elements, elements.get(0));
for( int i = 0; i < elements.size(); i++ ) {
IHillSlope elem = elements.get(i);
for( int j = i + 1; j < elements.size(); j++ ) {
IHillSlope tmp = elements.get(j);
elem.addConnectedDownstreamElementWithCheck(tmp);
}
}
} | java | public static void connectElements( List<IHillSlope> elements ) {
Collections.sort(elements, elements.get(0));
for( int i = 0; i < elements.size(); i++ ) {
IHillSlope elem = elements.get(i);
for( int j = i + 1; j < elements.size(); j++ ) {
IHillSlope tmp = elements.get(j);
elem.addConnectedDownstreamElementWithCheck(tmp);
}
}
} | [
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137,674 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/dwg/utils/HexUtil.java | HexUtil.bytesToHex | public static final String bytesToHex(byte[] bs, int off, int length) {
StringBuffer sb = new StringBuffer(length * 2);
bytesToHexAppend(bs, off, length, sb);
return sb.toString();
} | java | public static final String bytesToHex(byte[] bs, int off, int length) {
StringBuffer sb = new StringBuffer(length * 2);
bytesToHexAppend(bs, off, length, sb);
return sb.toString();
} | [
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137,675 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/dwg/utils/ArcFromBulgeCalculator.java | ArcFromBulgeCalculator.getPoints | public Vector getPoints(double inc) {
Vector arc = new Vector();
double angulo;
int iempieza = (int) empieza + 1;
int iacaba = (int) acaba;
if (empieza <= acaba) {
addNode(arc, empieza);
for (angulo = iempieza; angulo <= iacaba; angulo += inc) {
addNode(arc, angulo);
}
addNode(arc, acaba);
} else {
addNode(arc, empieza);
for (angulo = iempieza ; angulo <= 360; angulo += inc) {
addNode(arc, angulo);
}
for (angulo = 1; angulo <= iacaba; angulo += inc) {
addNode(arc, angulo);
}
addNode(arc, angulo);
}
Point2D aux = (Point2D)arc.get(arc.size()-1);
double aux1 = Math.abs(aux.getX()-coord2.getX());
double aux2 = Math.abs(aux.getY()-coord2.getY());
return arc;
} | java | public Vector getPoints(double inc) {
Vector arc = new Vector();
double angulo;
int iempieza = (int) empieza + 1;
int iacaba = (int) acaba;
if (empieza <= acaba) {
addNode(arc, empieza);
for (angulo = iempieza; angulo <= iacaba; angulo += inc) {
addNode(arc, angulo);
}
addNode(arc, acaba);
} else {
addNode(arc, empieza);
for (angulo = iempieza ; angulo <= 360; angulo += inc) {
addNode(arc, angulo);
}
for (angulo = 1; angulo <= iacaba; angulo += inc) {
addNode(arc, angulo);
}
addNode(arc, angulo);
}
Point2D aux = (Point2D)arc.get(arc.size()-1);
double aux1 = Math.abs(aux.getX()-coord2.getX());
double aux2 = Math.abs(aux.getY()-coord2.getY());
return arc;
} | [
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] | This method calculates an arc in a Gis geometry model. This arc is represented in
this model by a Vector of Point2D. The distance between points in the arc is given
as an argument
@param inc Distance between points in the arc
@return Vector Vector with the set of Point2D that represents the arc | [
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137,676 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/dwg/utils/ArcFromBulgeCalculator.java | ArcFromBulgeCalculator.getCentralPoint | public Vector getCentralPoint() {
Vector arc = new Vector();
if (empieza <= acaba) {
addNode(arc, (empieza+acaba)/2.0);
} else {
addNode(arc, empieza);
double alfa = 360-empieza;
double beta = acaba;
double an = alfa + beta;
double mid = an/2.0;
if (mid<=alfa) {
addNode(arc, empieza+mid);
} else {
addNode(arc, mid-alfa);
}
}
return arc;
} | java | public Vector getCentralPoint() {
Vector arc = new Vector();
if (empieza <= acaba) {
addNode(arc, (empieza+acaba)/2.0);
} else {
addNode(arc, empieza);
double alfa = 360-empieza;
double beta = acaba;
double an = alfa + beta;
double mid = an/2.0;
if (mid<=alfa) {
addNode(arc, empieza+mid);
} else {
addNode(arc, mid-alfa);
}
}
return arc;
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137,677 | TheHortonMachine/hortonmachine | apps/src/main/java/gov/nasa/worldwindx/hm/FileStoreDataSet.java | FileStoreDataSet.getDataSets | public static List<FileStoreDataSet> getDataSets(File cacheRoot)
{
if (cacheRoot == null)
{
String message = Logging.getMessage("nullValue.FileStorePathIsNull");
Logging.logger().severe(message);
throw new IllegalArgumentException(message);
}
ArrayList<FileStoreDataSet> datasets = new ArrayList<FileStoreDataSet>();
File[] cacheDirs = FileStoreDataSet.listDirs(cacheRoot);
for (File cacheDir : cacheDirs)
{
if (cacheDir.getName().equals("license"))
continue;
File[] subDirs = FileStoreDataSet.listDirs(cacheDir);
if (subDirs.length == 0)
{
datasets.add(new FileStoreDataSet(cacheDir, cacheRoot.getPath()));
}
else
{
// If the directory should be treated as a single dataset, add just one entry to the list.
if (isSingleDataSet(subDirs))
{
datasets.add(new FileStoreDataSet(cacheDir, cacheRoot.getPath()));
}
// Otherwise add each subdirectory as a separate data set.
else
{
for (File sd : subDirs)
{
FileStoreDataSet ds = new FileStoreDataSet(sd, cacheRoot.getPath());
datasets.add(ds);
}
}
}
}
return datasets;
} | java | public static List<FileStoreDataSet> getDataSets(File cacheRoot)
{
if (cacheRoot == null)
{
String message = Logging.getMessage("nullValue.FileStorePathIsNull");
Logging.logger().severe(message);
throw new IllegalArgumentException(message);
}
ArrayList<FileStoreDataSet> datasets = new ArrayList<FileStoreDataSet>();
File[] cacheDirs = FileStoreDataSet.listDirs(cacheRoot);
for (File cacheDir : cacheDirs)
{
if (cacheDir.getName().equals("license"))
continue;
File[] subDirs = FileStoreDataSet.listDirs(cacheDir);
if (subDirs.length == 0)
{
datasets.add(new FileStoreDataSet(cacheDir, cacheRoot.getPath()));
}
else
{
// If the directory should be treated as a single dataset, add just one entry to the list.
if (isSingleDataSet(subDirs))
{
datasets.add(new FileStoreDataSet(cacheDir, cacheRoot.getPath()));
}
// Otherwise add each subdirectory as a separate data set.
else
{
for (File sd : subDirs)
{
FileStoreDataSet ds = new FileStoreDataSet(sd, cacheRoot.getPath());
datasets.add(ds);
}
}
}
}
return datasets;
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@param cacheRoot Cache root to search.
@return List of data sets in the specified cache. | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/apps/src/main/java/gov/nasa/worldwindx/hm/FileStoreDataSet.java#L310-L352 |
137,678 | TheHortonMachine/hortonmachine | apps/src/main/java/gov/nasa/worldwindx/hm/FileStoreDataSet.java | FileStoreDataSet.listDirs | protected static File[] listDirs(File parent)
{
return parent.listFiles(new FileFilter()
{
public boolean accept(File file)
{
return file.isDirectory();
}
});
} | java | protected static File[] listDirs(File parent)
{
return parent.listFiles(new FileFilter()
{
public boolean accept(File file)
{
return file.isDirectory();
}
});
} | [
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137,679 | TheHortonMachine/hortonmachine | apps/src/main/java/gov/nasa/worldwindx/hm/FileStoreDataSet.java | FileStoreDataSet.isNumeric | protected static boolean isNumeric(String s)
{
for (char c : s.toCharArray())
{
if (!Character.isDigit(c))
return false;
}
return true;
} | java | protected static boolean isNumeric(String s)
{
for (char c : s.toCharArray())
{
if (!Character.isDigit(c))
return false;
}
return true;
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/apps/src/main/java/gov/nasa/worldwindx/hm/FileStoreDataSet.java#L402-L410 |
137,680 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/utils/WikiPageModulesOverviewCreator.java | WikiPageModulesOverviewCreator.createModulesOverview | public static void createModulesOverview() {
Map<String, List<ClassField>> hmModules = HortonMachine.getInstance().moduleName2Fields;
Map<String, List<ClassField>> jggModules = JGrassGears.getInstance().moduleName2Fields;
Map<String, Class< ? >> hmModulesClasses = HortonMachine.getInstance().moduleName2Class;
Map<String, Class< ? >> jggModulesClasses = JGrassGears.getInstance().moduleName2Class;
Set<String> hmNames = hmModules.keySet();
String[] hmNamesArray = (String[]) hmNames.toArray(new String[hmNames.size()]);
Set<String> jggNames = jggModules.keySet();
String[] jggNamesArray = (String[]) jggNames.toArray(new String[jggNames.size()]);
Arrays.sort(hmNamesArray);
Arrays.sort(jggNamesArray);
StringBuilder sb = new StringBuilder();
sb.append("#summary An overview of the modules implemented in the HortonMachine\n\n");
sb.append("<wiki:toc max_depth=\"4\" />\n\n");
sb.append("= HortonMachine Modules Overview =\n");
sb.append("== !HortonMachine Modules ==\n");
String status = "CERTIFIED";
sb.append("=== Release ready ==\n");
dumpModules(hmModules, hmModulesClasses, hmNamesArray, sb, status);
status = "TESTED";
sb.append("=== Tested but not for upcoming release ==\n");
dumpModules(hmModules, hmModulesClasses, hmNamesArray, sb, status);
status = "DRAFT";
sb.append("=== Module that are not passing the QA rules yet ==\n");
dumpModules(hmModules, hmModulesClasses, hmNamesArray, sb, status);
sb.append("\n<BR/><BR/><BR/>\n\n");
sb.append("== Gears Modules ==\n");
status = "CERTIFIED";
sb.append("=== Release ready ==\n");
dumpModules(jggModules, jggModulesClasses, jggNamesArray, sb, status);
status = "TESTED";
sb.append("=== Tested but not for upcoming release ==\n");
dumpModules(jggModules, jggModulesClasses, jggNamesArray, sb, status);
status = "DRAFT";
sb.append("=== Module that are not passing the QA rules yet ==\n");
dumpModules(jggModules, jggModulesClasses, jggNamesArray, sb, status);
System.out.println(sb.toString());
} | java | public static void createModulesOverview() {
Map<String, List<ClassField>> hmModules = HortonMachine.getInstance().moduleName2Fields;
Map<String, List<ClassField>> jggModules = JGrassGears.getInstance().moduleName2Fields;
Map<String, Class< ? >> hmModulesClasses = HortonMachine.getInstance().moduleName2Class;
Map<String, Class< ? >> jggModulesClasses = JGrassGears.getInstance().moduleName2Class;
Set<String> hmNames = hmModules.keySet();
String[] hmNamesArray = (String[]) hmNames.toArray(new String[hmNames.size()]);
Set<String> jggNames = jggModules.keySet();
String[] jggNamesArray = (String[]) jggNames.toArray(new String[jggNames.size()]);
Arrays.sort(hmNamesArray);
Arrays.sort(jggNamesArray);
StringBuilder sb = new StringBuilder();
sb.append("#summary An overview of the modules implemented in the HortonMachine\n\n");
sb.append("<wiki:toc max_depth=\"4\" />\n\n");
sb.append("= HortonMachine Modules Overview =\n");
sb.append("== !HortonMachine Modules ==\n");
String status = "CERTIFIED";
sb.append("=== Release ready ==\n");
dumpModules(hmModules, hmModulesClasses, hmNamesArray, sb, status);
status = "TESTED";
sb.append("=== Tested but not for upcoming release ==\n");
dumpModules(hmModules, hmModulesClasses, hmNamesArray, sb, status);
status = "DRAFT";
sb.append("=== Module that are not passing the QA rules yet ==\n");
dumpModules(hmModules, hmModulesClasses, hmNamesArray, sb, status);
sb.append("\n<BR/><BR/><BR/>\n\n");
sb.append("== Gears Modules ==\n");
status = "CERTIFIED";
sb.append("=== Release ready ==\n");
dumpModules(jggModules, jggModulesClasses, jggNamesArray, sb, status);
status = "TESTED";
sb.append("=== Tested but not for upcoming release ==\n");
dumpModules(jggModules, jggModulesClasses, jggNamesArray, sb, status);
status = "DRAFT";
sb.append("=== Module that are not passing the QA rules yet ==\n");
dumpModules(jggModules, jggModulesClasses, jggNamesArray, sb, status);
System.out.println(sb.toString());
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/hmachine/src/main/java/org/hortonmachine/hmachine/utils/WikiPageModulesOverviewCreator.java#L41-L87 |
137,681 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/h2gis/H2GisServer.java | H2GisServer.startTcpServerMode | public static Server startTcpServerMode( String port, boolean doSSL, String tcpPassword, boolean ifExists, String baseDir )
throws SQLException {
List<String> params = new ArrayList<>();
params.add("-tcpAllowOthers");
params.add("-tcpPort");
if (port == null) {
port = "9123";
}
params.add(port);
if (doSSL) {
params.add("-tcpSSL");
}
if (tcpPassword != null) {
params.add("-tcpPassword");
params.add(tcpPassword);
}
if (ifExists) {
params.add("-ifExists");
}
if (baseDir != null) {
params.add("-baseDir");
params.add(baseDir);
}
Server server = Server.createTcpServer(params.toArray(new String[0])).start();
return server;
} | java | public static Server startTcpServerMode( String port, boolean doSSL, String tcpPassword, boolean ifExists, String baseDir )
throws SQLException {
List<String> params = new ArrayList<>();
params.add("-tcpAllowOthers");
params.add("-tcpPort");
if (port == null) {
port = "9123";
}
params.add(port);
if (doSSL) {
params.add("-tcpSSL");
}
if (tcpPassword != null) {
params.add("-tcpPassword");
params.add(tcpPassword);
}
if (ifExists) {
params.add("-ifExists");
}
if (baseDir != null) {
params.add("-baseDir");
params.add(baseDir);
}
Server server = Server.createTcpServer(params.toArray(new String[0])).start();
return server;
} | [
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<p>This calls:
<pre>
Server server = Server.createTcpServer(
"-tcpPort", "9123", "-tcpAllowOthers").start();
</pre>
Supported options are:
-tcpPort, -tcpSSL, -tcpPassword, -tcpAllowOthers, -tcpDaemon,
-trace, -ifExists, -baseDir, -key.
See the main method for details.
<p>
@param port the optional port to use.
@param doSSL if <code>true</code>, ssl is used.
@param tcpPassword an optional tcp passowrd to use.
@param ifExists is <code>true</code>, the database to connect to has to exist.
@param baseDir an optional basedir into which it is allowed to connect.
@return
@throws SQLException | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/org/hortonmachine/dbs/h2gis/H2GisServer.java#L58-L87 |
137,682 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/h2gis/H2GisServer.java | H2GisServer.startWebServerMode | public static Server startWebServerMode( String port, boolean doSSL, boolean ifExists, String baseDir ) throws SQLException {
List<String> params = new ArrayList<>();
params.add("-webAllowOthers");
if (port != null) {
params.add("-webPort");
params.add(port);
}
if (doSSL) {
params.add("-webSSL");
}
if (ifExists) {
params.add("-ifExists");
}
if (baseDir != null) {
params.add("-baseDir");
params.add(baseDir);
}
Server server = Server.createWebServer(params.toArray(new String[0])).start();
return server;
} | java | public static Server startWebServerMode( String port, boolean doSSL, boolean ifExists, String baseDir ) throws SQLException {
List<String> params = new ArrayList<>();
params.add("-webAllowOthers");
if (port != null) {
params.add("-webPort");
params.add(port);
}
if (doSSL) {
params.add("-webSSL");
}
if (ifExists) {
params.add("-ifExists");
}
if (baseDir != null) {
params.add("-baseDir");
params.add(baseDir);
}
Server server = Server.createWebServer(params.toArray(new String[0])).start();
return server;
} | [
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@param port the optional port to use.
@param doSSL if <code>true</code>, ssl is used.
@param ifExists is <code>true</code>, the database to connect to has to exist.
@param baseDir an optional basedir into which it is allowed to connect.
@return
@throws SQLException | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/org/hortonmachine/dbs/h2gis/H2GisServer.java#L99-L122 |
137,683 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/spatialite/SpatialDbsImportUtils.java | SpatialDbsImportUtils.createTableFromShp | public static String createTableFromShp( ASpatialDb db, File shapeFile, String newTableName, boolean avoidSpatialIndex )
throws Exception {
FileDataStore store = FileDataStoreFinder.getDataStore(shapeFile);
SimpleFeatureSource featureSource = store.getFeatureSource();
SimpleFeatureType schema = featureSource.getSchema();
if (newTableName == null) {
newTableName = FileUtilities.getNameWithoutExtention(shapeFile);
}
return createTableFromSchema(db, schema, newTableName, avoidSpatialIndex);
} | java | public static String createTableFromShp( ASpatialDb db, File shapeFile, String newTableName, boolean avoidSpatialIndex )
throws Exception {
FileDataStore store = FileDataStoreFinder.getDataStore(shapeFile);
SimpleFeatureSource featureSource = store.getFeatureSource();
SimpleFeatureType schema = featureSource.getSchema();
if (newTableName == null) {
newTableName = FileUtilities.getNameWithoutExtention(shapeFile);
}
return createTableFromSchema(db, schema, newTableName, avoidSpatialIndex);
} | [
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@return the name of the created table.
@param avoidSpatialIndex if <code>true</code>, no spatial index will be created. This is useful if many records
have to be inserted and the index will be created later manually.
@return the name of the created table.
@throws Exception | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/spatialite/SpatialDbsImportUtils.java#L88-L97 |
137,684 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/spatialite/SpatialDbsImportUtils.java | SpatialDbsImportUtils.importShapefile | public static boolean importShapefile( ASpatialDb db, File shapeFile, String tableName, int limit, IHMProgressMonitor pm )
throws Exception {
FileDataStore store = FileDataStoreFinder.getDataStore(shapeFile);
SimpleFeatureSource featureSource = store.getFeatureSource();
SimpleFeatureCollection features = featureSource.getFeatures();
return importFeatureCollection(db, features, tableName, limit, pm);
} | java | public static boolean importShapefile( ASpatialDb db, File shapeFile, String tableName, int limit, IHMProgressMonitor pm )
throws Exception {
FileDataStore store = FileDataStoreFinder.getDataStore(shapeFile);
SimpleFeatureSource featureSource = store.getFeatureSource();
SimpleFeatureCollection features = featureSource.getFeatures();
return importFeatureCollection(db, features, tableName, limit, pm);
} | [
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@param limit if > 0, a limit to the imported features is applied.
@param pm the progress monitor.
@return <code>false</code>, is an error occurred.
@throws Exception | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/spatialite/SpatialDbsImportUtils.java#L199-L207 |
137,685 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.writeExif | private void writeExif() throws IOException {
IIOMetadata metadata = jpegReader.getImageMetadata(0);
// names says which exif tree to get - 0 for jpeg 1 for the default
String[] names = metadata.getMetadataFormatNames();
IIOMetadataNode root = (IIOMetadataNode) metadata.getAsTree(names[0]);
// exif is on the app1 node called unknown
NodeList nList = root.getElementsByTagName("unknown");
IIOMetadataNode app1EXIFNode = (IIOMetadataNode) nList.item(0);
ArrayList<IIOMetadata> md = readExif(app1EXIFNode);
IIOMetadata exifMetadata = md.get(0);
// insert the gps data into the exif
exifMetadata = insertGPSCoords(exifMetadata);
// create a new exif node
IIOMetadataNode app1NodeNew = createNewExifNode(exifMetadata, null, null);
// copy the user data accross
app1EXIFNode.setUserObject(app1NodeNew.getUserObject());
// write to a new image file
FileImageOutputStream out1 = new FileImageOutputStream(new File("GPS_" + imageFile.getName()));
jpegWriter.setOutput(out1);
metadata.setFromTree(names[0], root);
IIOImage image = new IIOImage(jpegReader.readAsRenderedImage(0, jpegReader.getDefaultReadParam()), null, metadata);
// write out the new image
jpegWriter.write(jpegReader.getStreamMetadata(), image, jpegWriter.getDefaultWriteParam());
} | java | private void writeExif() throws IOException {
IIOMetadata metadata = jpegReader.getImageMetadata(0);
// names says which exif tree to get - 0 for jpeg 1 for the default
String[] names = metadata.getMetadataFormatNames();
IIOMetadataNode root = (IIOMetadataNode) metadata.getAsTree(names[0]);
// exif is on the app1 node called unknown
NodeList nList = root.getElementsByTagName("unknown");
IIOMetadataNode app1EXIFNode = (IIOMetadataNode) nList.item(0);
ArrayList<IIOMetadata> md = readExif(app1EXIFNode);
IIOMetadata exifMetadata = md.get(0);
// insert the gps data into the exif
exifMetadata = insertGPSCoords(exifMetadata);
// create a new exif node
IIOMetadataNode app1NodeNew = createNewExifNode(exifMetadata, null, null);
// copy the user data accross
app1EXIFNode.setUserObject(app1NodeNew.getUserObject());
// write to a new image file
FileImageOutputStream out1 = new FileImageOutputStream(new File("GPS_" + imageFile.getName()));
jpegWriter.setOutput(out1);
metadata.setFromTree(names[0], root);
IIOImage image = new IIOImage(jpegReader.readAsRenderedImage(0, jpegReader.getDefaultReadParam()), null, metadata);
// write out the new image
jpegWriter.write(jpegReader.getStreamMetadata(), image, jpegWriter.getDefaultWriteParam());
} | [
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@param gps - gps position to be added
@throws IOException | [
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137,686 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.readExif | private ArrayList<IIOMetadata> readExif( IIOMetadataNode app1EXIFNode ) {
// Set up input skipping EXIF ID 6-byte sequence.
byte[] app1Params = (byte[]) app1EXIFNode.getUserObject();
MemoryCacheImageInputStream app1EXIFInput = new MemoryCacheImageInputStream(new ByteArrayInputStream(app1Params, 6,
app1Params.length - 6));
// only the tiff reader knows how to interpret the exif metadata
ImageReader tiffReader = null;
Iterator<ImageReader> readers = ImageIO.getImageReadersByFormatName("tiff");
while( readers.hasNext() ) {
tiffReader = (ImageReader) readers.next();
if (tiffReader.getClass().getName().startsWith("com.sun.media")) {
// Break on finding the core provider.
break;
}
}
if (tiffReader == null) {
throw new RuntimeException("Cannot find core TIFF reader!");
}
ArrayList<IIOMetadata> out = new ArrayList<IIOMetadata>(1);
tiffReader.setInput(app1EXIFInput);
IIOMetadata tiffMetadata = null;
try {
tiffMetadata = tiffReader.getImageMetadata(0);
// IIOMetadata meta = tiffReader.getImageMetadata(0);
TIFFImageReadParam rParam = (TIFFImageReadParam) tiffReader.getDefaultReadParam();
rParam.setTIFFDecompressor(null);
} catch (IOException e) {
e.printStackTrace();
};
tiffReader.dispose();
out.add(0, tiffMetadata);
return out;
} | java | private ArrayList<IIOMetadata> readExif( IIOMetadataNode app1EXIFNode ) {
// Set up input skipping EXIF ID 6-byte sequence.
byte[] app1Params = (byte[]) app1EXIFNode.getUserObject();
MemoryCacheImageInputStream app1EXIFInput = new MemoryCacheImageInputStream(new ByteArrayInputStream(app1Params, 6,
app1Params.length - 6));
// only the tiff reader knows how to interpret the exif metadata
ImageReader tiffReader = null;
Iterator<ImageReader> readers = ImageIO.getImageReadersByFormatName("tiff");
while( readers.hasNext() ) {
tiffReader = (ImageReader) readers.next();
if (tiffReader.getClass().getName().startsWith("com.sun.media")) {
// Break on finding the core provider.
break;
}
}
if (tiffReader == null) {
throw new RuntimeException("Cannot find core TIFF reader!");
}
ArrayList<IIOMetadata> out = new ArrayList<IIOMetadata>(1);
tiffReader.setInput(app1EXIFInput);
IIOMetadata tiffMetadata = null;
try {
tiffMetadata = tiffReader.getImageMetadata(0);
// IIOMetadata meta = tiffReader.getImageMetadata(0);
TIFFImageReadParam rParam = (TIFFImageReadParam) tiffReader.getDefaultReadParam();
rParam.setTIFFDecompressor(null);
} catch (IOException e) {
e.printStackTrace();
};
tiffReader.dispose();
out.add(0, tiffMetadata);
return out;
} | [
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@param app1EXIFNode app1 Node of the image (where the exif data is stored)
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137,687 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.createNewExifNode | private IIOMetadataNode createNewExifNode( IIOMetadata tiffMetadata, IIOMetadata thumbMeta, BufferedImage thumbnail ) {
IIOMetadataNode app1Node = null;
ImageWriter tiffWriter = null;
try {
Iterator<ImageWriter> writers = ImageIO.getImageWritersByFormatName("tiff");
while( writers.hasNext() ) {
tiffWriter = writers.next();
if (tiffWriter.getClass().getName().startsWith("com.sun.media")) {
// Break on finding the core provider.
break;
}
}
if (tiffWriter == null) {
System.out.println("Cannot find core TIFF writer!");
System.exit(0);
}
ImageWriteParam writeParam = tiffWriter.getDefaultWriteParam();
writeParam.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
writeParam.setCompressionType("EXIF JPEG");
ByteArrayOutputStream baos = new ByteArrayOutputStream();
MemoryCacheImageOutputStream app1EXIFOutput = new MemoryCacheImageOutputStream(baos);
tiffWriter.setOutput(app1EXIFOutput);
// escribir
tiffWriter.prepareWriteEmpty(jpegReader.getStreamMetadata(), new ImageTypeSpecifier(image), image.getWidth(),
image.getHeight(), tiffMetadata, null, writeParam);
tiffWriter.endWriteEmpty();
// Flush data into byte stream.
app1EXIFOutput.flush();
// Create APP1 parameter array.
byte[] app1Parameters = new byte[6 + baos.size()];
// Add EXIF APP1 ID bytes.
app1Parameters[0] = (byte) 'E';
app1Parameters[1] = (byte) 'x';
app1Parameters[2] = (byte) 'i';
app1Parameters[3] = (byte) 'f';
app1Parameters[4] = app1Parameters[5] = (byte) 0;
// Append TIFF stream to APP1 parameters.
System.arraycopy(baos.toByteArray(), 0, app1Parameters, 6, baos.size());
// Create the APP1 EXIF node to be added to native JPEG image metadata.
app1Node = new IIOMetadataNode("unknown");
app1Node.setAttribute("MarkerTag", (new Integer(0xE1)).toString());
app1Node.setUserObject(app1Parameters);
} catch (IOException e) {
e.printStackTrace();
} finally {
if (tiffWriter != null)
tiffWriter.dispose();
}
return app1Node;
} | java | private IIOMetadataNode createNewExifNode( IIOMetadata tiffMetadata, IIOMetadata thumbMeta, BufferedImage thumbnail ) {
IIOMetadataNode app1Node = null;
ImageWriter tiffWriter = null;
try {
Iterator<ImageWriter> writers = ImageIO.getImageWritersByFormatName("tiff");
while( writers.hasNext() ) {
tiffWriter = writers.next();
if (tiffWriter.getClass().getName().startsWith("com.sun.media")) {
// Break on finding the core provider.
break;
}
}
if (tiffWriter == null) {
System.out.println("Cannot find core TIFF writer!");
System.exit(0);
}
ImageWriteParam writeParam = tiffWriter.getDefaultWriteParam();
writeParam.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
writeParam.setCompressionType("EXIF JPEG");
ByteArrayOutputStream baos = new ByteArrayOutputStream();
MemoryCacheImageOutputStream app1EXIFOutput = new MemoryCacheImageOutputStream(baos);
tiffWriter.setOutput(app1EXIFOutput);
// escribir
tiffWriter.prepareWriteEmpty(jpegReader.getStreamMetadata(), new ImageTypeSpecifier(image), image.getWidth(),
image.getHeight(), tiffMetadata, null, writeParam);
tiffWriter.endWriteEmpty();
// Flush data into byte stream.
app1EXIFOutput.flush();
// Create APP1 parameter array.
byte[] app1Parameters = new byte[6 + baos.size()];
// Add EXIF APP1 ID bytes.
app1Parameters[0] = (byte) 'E';
app1Parameters[1] = (byte) 'x';
app1Parameters[2] = (byte) 'i';
app1Parameters[3] = (byte) 'f';
app1Parameters[4] = app1Parameters[5] = (byte) 0;
// Append TIFF stream to APP1 parameters.
System.arraycopy(baos.toByteArray(), 0, app1Parameters, 6, baos.size());
// Create the APP1 EXIF node to be added to native JPEG image metadata.
app1Node = new IIOMetadataNode("unknown");
app1Node.setAttribute("MarkerTag", (new Integer(0xE1)).toString());
app1Node.setUserObject(app1Parameters);
} catch (IOException e) {
e.printStackTrace();
} finally {
if (tiffWriter != null)
tiffWriter.dispose();
}
return app1Node;
} | [
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] | Private method - creates a copy of the metadata that can be written to
@param tiffMetadata - in metadata
@return new metadata node that can be written to | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java#L288-L349 |
137,688 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.getLatitude | private long[][] getLatitude( String lat ) {
float secs = Float.parseFloat("0" + lat.substring(4)) * 60.f;
long nom = (long) (secs * 1000);
long[][] latl = new long[][]{{Long.parseLong(lat.substring(0, 2)), 1}, {Long.parseLong(lat.substring(2, 4)), 1},
{nom, 1000}};
return latl;
} | java | private long[][] getLatitude( String lat ) {
float secs = Float.parseFloat("0" + lat.substring(4)) * 60.f;
long nom = (long) (secs * 1000);
long[][] latl = new long[][]{{Long.parseLong(lat.substring(0, 2)), 1}, {Long.parseLong(lat.substring(2, 4)), 1},
{nom, 1000}};
return latl;
} | [
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137,689 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.getLongitude | private long[][] getLongitude( String longi ) {
float secs = Float.parseFloat("0" + longi.substring(5)) * 60.f;
long nom = (long) (secs * 1000);
long[][] longl = new long[][]{{Long.parseLong(longi.substring(0, 3)), 1}, {Long.parseLong(longi.substring(3, 5)), 1},
{nom, 1000}};
return longl;
} | java | private long[][] getLongitude( String longi ) {
float secs = Float.parseFloat("0" + longi.substring(5)) * 60.f;
long nom = (long) (secs * 1000);
long[][] longl = new long[][]{{Long.parseLong(longi.substring(0, 3)), 1}, {Long.parseLong(longi.substring(3, 5)), 1},
{nom, 1000}};
return longl;
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137,690 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.getTime | private long[][] getTime( String time ) {
long[][] timel = new long[][]{{Long.parseLong(time.substring(0, 2)), 1}, {Long.parseLong(time.substring(2, 4)), 1},
{Long.parseLong(time.substring(4)), 1}};
return timel;
} | java | private long[][] getTime( String time ) {
long[][] timel = new long[][]{{Long.parseLong(time.substring(0, 2)), 1}, {Long.parseLong(time.substring(2, 4)), 1},
{Long.parseLong(time.substring(4)), 1}};
return timel;
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@return the exif time object. | [
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137,691 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java | ExifGpsWriter.getDate | private String[] getDate( String date ) {
String dateStr = "20" + date.substring(4) + ":" + date.substring(2, 4) + ":" + date.substring(0, 2);
String[] dateArray = new String[11];
for( int i = 0; i < dateStr.length(); i++ )
dateArray[i] = dateStr.substring(i, i + 1);
dateArray[10] = "";
return dateArray;
} | java | private String[] getDate( String date ) {
String dateStr = "20" + date.substring(4) + ":" + date.substring(2, 4) + ":" + date.substring(0, 2);
String[] dateArray = new String[11];
for( int i = 0; i < dateStr.length(); i++ )
dateArray[i] = dateStr.substring(i, i + 1);
dateArray[10] = "";
return dateArray;
} | [
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] | Convert a date to exif date.
@param date the date in format YYYY:MM:DD
@return the exif date object. | [
"Convert",
"a",
"date",
"to",
"exif",
"date",
"."
] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/exif/ExifGpsWriter.java#L493-L504 |
137,692 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java | GvmCluster.clear | void clear() {
count = 0;
m0 = 0.0;
clusters.space.setToOrigin(m1);
clusters.space.setToOrigin(m2);
var = 0.0;
key = null;
} | java | void clear() {
count = 0;
m0 = 0.0;
clusters.space.setToOrigin(m1);
clusters.space.setToOrigin(m2);
var = 0.0;
key = null;
} | [
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137,693 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java | GvmCluster.set | void set(final double m, final Object pt) {
if (m == 0.0) {
if (count != 0) {
clusters.space.setToOrigin(m1);
clusters.space.setToOrigin(m2);
}
} else {
clusters.space.setToScaled(m1, m, pt);
clusters.space.setToScaledSqr(m2, m, pt);
}
count = 1;
m0 = m;
var = 0.0;
} | java | void set(final double m, final Object pt) {
if (m == 0.0) {
if (count != 0) {
clusters.space.setToOrigin(m1);
clusters.space.setToOrigin(m2);
}
} else {
clusters.space.setToScaled(m1, m, pt);
clusters.space.setToScaledSqr(m2, m, pt);
}
count = 1;
m0 = m;
var = 0.0;
} | [
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@param m
the mass of the point
@param pt
the coordinates of the point | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java#L156-L169 |
137,694 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java | GvmCluster.add | void add(final double m, final Object pt) {
if (count == 0) {
set(m, pt);
} else {
count += 1;
if (m != 0.0) {
m0 += m;
clusters.space.addScaled(m1, m, pt);
clusters.space.addScaledSqr(m2, m, pt);
update();
}
}
} | java | void add(final double m, final Object pt) {
if (count == 0) {
set(m, pt);
} else {
count += 1;
if (m != 0.0) {
m0 += m;
clusters.space.addScaled(m1, m, pt);
clusters.space.addScaledSqr(m2, m, pt);
update();
}
}
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java#L180-L193 |
137,695 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java | GvmCluster.set | void set(GvmCluster<S,K> cluster) {
if (cluster == this) throw new IllegalArgumentException("cannot set cluster to itself");
m0 = cluster.m0;
clusters.space.setTo(m1, cluster.m1);
clusters.space.setTo(m2, cluster.m2);
var = cluster.var;
} | java | void set(GvmCluster<S,K> cluster) {
if (cluster == this) throw new IllegalArgumentException("cannot set cluster to itself");
m0 = cluster.m0;
clusters.space.setTo(m1, cluster.m1);
clusters.space.setTo(m2, cluster.m2);
var = cluster.var;
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java#L201-L208 |
137,696 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java | GvmCluster.add | void add(GvmCluster<S,K> cluster) {
if (cluster == this) throw new IllegalArgumentException();
if (cluster.count == 0) return; //nothing to do
if (count == 0) {
set(cluster);
} else {
count += cluster.count;
//TODO accelerate add
m0 += cluster.m0;
clusters.space.add(m1, cluster.m1);
clusters.space.add(m2, cluster.m2);
update();
}
} | java | void add(GvmCluster<S,K> cluster) {
if (cluster == this) throw new IllegalArgumentException();
if (cluster.count == 0) return; //nothing to do
if (count == 0) {
set(cluster);
} else {
count += cluster.count;
//TODO accelerate add
m0 += cluster.m0;
clusters.space.add(m1, cluster.m1);
clusters.space.add(m2, cluster.m2);
update();
}
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmCluster.java#L216-L230 |
137,697 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/dwg/utils/Unicode.java | Unicode.char2DOS437 | public static synchronized String char2DOS437( StringBuffer stringbuffer, int i, char c ) {
if (unicode2DOS437 == null) {
unicode2DOS437 = new char[0x10000];
for( int j = 0; j < 256; j++ ) {
char c1;
if ((c1 = unicode[2][j]) != '\uFFFF')
unicode2DOS437[c1] = (char) j;
}
}
if (i != 2) {
StringBuffer stringbuffer1 = new StringBuffer(stringbuffer.length());
for( int k = 0; k < stringbuffer.length(); k++ ) {
char c2 = unicode2DOS437[stringbuffer.charAt(k)];
stringbuffer1.append(c2 == 0 ? c : c2);
}
return new String(stringbuffer1);
} else {
return new String(stringbuffer);
}
} | java | public static synchronized String char2DOS437( StringBuffer stringbuffer, int i, char c ) {
if (unicode2DOS437 == null) {
unicode2DOS437 = new char[0x10000];
for( int j = 0; j < 256; j++ ) {
char c1;
if ((c1 = unicode[2][j]) != '\uFFFF')
unicode2DOS437[c1] = (char) j;
}
}
if (i != 2) {
StringBuffer stringbuffer1 = new StringBuffer(stringbuffer.length());
for( int k = 0; k < stringbuffer.length(); k++ ) {
char c2 = unicode2DOS437[stringbuffer.charAt(k)];
stringbuffer1.append(c2 == 0 ? c : c2);
}
return new String(stringbuffer1);
} else {
return new String(stringbuffer);
}
} | [
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] | Char to DOS437 converter
@param stringbuffer
@param i
@param c
@return String | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/dxfdwg/libs/dwg/utils/Unicode.java#L293-L313 |
137,698 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/ComponentAccess.java | ComponentAccess.callAnnotated | public static void callAnnotated(Object o, Class<? extends Annotation> ann, boolean lazy) {
try {
getMethodOfInterest(o, ann).invoke(o);
} catch (IllegalAccessException ex) {
throw new RuntimeException(ex);
} catch (InvocationTargetException ex) {
throw new RuntimeException(ex.getCause());
} catch (IllegalArgumentException ex) {
if (!lazy) {
throw new RuntimeException(ex.getMessage());
}
}
} | java | public static void callAnnotated(Object o, Class<? extends Annotation> ann, boolean lazy) {
try {
getMethodOfInterest(o, ann).invoke(o);
} catch (IllegalAccessException ex) {
throw new RuntimeException(ex);
} catch (InvocationTargetException ex) {
throw new RuntimeException(ex.getCause());
} catch (IllegalArgumentException ex) {
if (!lazy) {
throw new RuntimeException(ex.getMessage());
}
}
} | [
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] | Call an method by Annotation.
@param o the object to call.
@param ann the annotation
@param lazy if true, the a missing annotation is OK. if false
the annotation has to be present or a Runtime exception is thrown. | [
"Call",
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"."
] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/oms3/ComponentAccess.java#L255-L267 |
137,699 | TheHortonMachine/hortonmachine | gears/src/main/java/oms3/ComponentAccess.java | ComponentAccess.infoClass | public static Class infoClass(Class cmp) {
Class info = null;
try {
info = Class.forName(cmp.getName() + "CompInfo");
} catch (ClassNotFoundException E) { // there is no info class,
info = cmp;
}
return info;
} | java | public static Class infoClass(Class cmp) {
Class info = null;
try {
info = Class.forName(cmp.getName() + "CompInfo");
} catch (ClassNotFoundException E) { // there is no info class,
info = cmp;
}
return info;
} | [
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] | Get the info class for a component object
@param cmp
@return the class that contains the annotations. | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/oms3/ComponentAccess.java#L275-L283 |
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