id int32 0 165k | repo stringlengths 7 58 | path stringlengths 12 218 | func_name stringlengths 3 140 | original_string stringlengths 73 34.1k | language stringclasses 1 value | code stringlengths 73 34.1k | code_tokens list | docstring stringlengths 3 16k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 105 339 |
|---|---|---|---|---|---|---|---|---|---|---|---|
137,200 | phax/ph-pdf-layout | src/main/java/com/helger/pdflayout4/PageLayoutPDF.java | PageLayoutPDF.addPageSet | public void addPageSet (@Nonnull final PLPageSet aPageSet)
{
ValueEnforcer.notNull (aPageSet, "PageSet");
m_aPageSets.add (aPageSet);
} | java | public void addPageSet (@Nonnull final PLPageSet aPageSet)
{
ValueEnforcer.notNull (aPageSet, "PageSet");
m_aPageSets.add (aPageSet);
} | [
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@param aPageSet
The page set to be added. May not be <code>null</code>. | [
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] | 777d9f3a131cbe8f592c0de1cf554084e541bb54 | https://github.com/phax/ph-pdf-layout/blob/777d9f3a131cbe8f592c0de1cf554084e541bb54/src/main/java/com/helger/pdflayout4/PageLayoutPDF.java#L199-L203 |
137,201 | phax/ph-pdf-layout | src/main/java/com/helger/pdflayout4/base/PLPageSetPrepareResult.java | PLPageSetPrepareResult.setHeaderHeight | void setHeaderHeight (final float fHeaderHeight)
{
// Set the maximum value only
if (Float.isNaN (m_fHeaderHeight))
m_fHeaderHeight = fHeaderHeight;
else
m_fHeaderHeight = Math.max (m_fHeaderHeight, fHeaderHeight);
} | java | void setHeaderHeight (final float fHeaderHeight)
{
// Set the maximum value only
if (Float.isNaN (m_fHeaderHeight))
m_fHeaderHeight = fHeaderHeight;
else
m_fHeaderHeight = Math.max (m_fHeaderHeight, fHeaderHeight);
} | [
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@param fHeaderHeight
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137,202 | phax/ph-pdf-layout | src/main/java/com/helger/pdflayout4/base/PLPageSetPrepareResult.java | PLPageSetPrepareResult.setFooterHeight | void setFooterHeight (final float fFooterHeight)
{
// Set the maximum value only
if (Float.isNaN (m_fFooterHeight))
m_fFooterHeight = fFooterHeight;
else
m_fFooterHeight = Math.max (m_fFooterHeight, fFooterHeight);
} | java | void setFooterHeight (final float fFooterHeight)
{
// Set the maximum value only
if (Float.isNaN (m_fFooterHeight))
m_fFooterHeight = fFooterHeight;
else
m_fFooterHeight = Math.max (m_fFooterHeight, fFooterHeight);
} | [
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137,203 | phax/ph-pdf-layout | src/main/java/com/helger/pdflayout4/base/PLPageSetPrepareResult.java | PLPageSetPrepareResult.addPerPageElements | void addPerPageElements (@Nonnull @Nonempty final ICommonsList <PLElementWithSize> aCurPageElements)
{
ValueEnforcer.notEmptyNoNullValue (aCurPageElements, "CurPageElements");
m_aPerPageElements.add (aCurPageElements);
} | java | void addPerPageElements (@Nonnull @Nonempty final ICommonsList <PLElementWithSize> aCurPageElements)
{
ValueEnforcer.notEmptyNoNullValue (aCurPageElements, "CurPageElements");
m_aPerPageElements.add (aCurPageElements);
} | [
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137,204 | phax/ph-pdf-layout | src/main/java/com/helger/pdflayout4/spec/WidthSpec.java | WidthSpec.getEffectiveValue | @Nonnegative
public float getEffectiveValue (final float fAvailableWidth)
{
switch (m_eType)
{
case ABSOLUTE:
return Math.min (m_fValue, fAvailableWidth);
case PERCENTAGE:
return fAvailableWidth * m_fValue / 100;
default:
throw new IllegalStateException ("Unsupported: " + m_eType + " - must be calculated outside!");
}
} | java | @Nonnegative
public float getEffectiveValue (final float fAvailableWidth)
{
switch (m_eType)
{
case ABSOLUTE:
return Math.min (m_fValue, fAvailableWidth);
case PERCENTAGE:
return fAvailableWidth * m_fValue / 100;
default:
throw new IllegalStateException ("Unsupported: " + m_eType + " - must be calculated outside!");
}
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@param fAvailableWidth
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@return The effective width to use.
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137,205 | impinj/itemsense-java | src/main/java/com/impinj/itemsense/client/data/item/ItemController.java | ItemController.getAllItems | @Deprecated
public ArrayList<Item> getAllItems(
EpcFormat epcFormat,
String epcPrefix,
String jobId,
String zoneNames,
PresenceConfidence presenceConfidence,
String facility,
String pageMarker) {
return getAllItems(
epcFormat,
epcPrefix,
jobId,
zoneNames,
presenceConfidence,
facility,
null,
null);
} | java | @Deprecated
public ArrayList<Item> getAllItems(
EpcFormat epcFormat,
String epcPrefix,
String jobId,
String zoneNames,
PresenceConfidence presenceConfidence,
String facility,
String pageMarker) {
return getAllItems(
epcFormat,
epcPrefix,
jobId,
zoneNames,
presenceConfidence,
facility,
null,
null);
} | [
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137,206 | allengeorge/libraft | libraft-agent/src/main/java/io/libraft/agent/rpc/Handshakers.java | Handshakers.getServerIdFromHandshake | static String getServerIdFromHandshake(ChannelBuffer handshakeBuffer, ObjectMapper mapper) throws IOException {
Handshake handshake = getHandshakeFromBuffer(handshakeBuffer, mapper);
return handshake.getServerId();
} | java | static String getServerIdFromHandshake(ChannelBuffer handshakeBuffer, ObjectMapper mapper) throws IOException {
Handshake handshake = getHandshakeFromBuffer(handshakeBuffer, mapper);
return handshake.getServerId();
} | [
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@param handshakeBuffer instance of {@code ChannelBuffer} that contains
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@param mapper instance of {@code ObjectMapper} used to map handshake fields
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@return unique id of the Raft server that sent the handshake message
@throws IOException if a valid handshake cannot be read from the {@code handshakeBuffer} | [
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137,207 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/ui/SupportMail.java | SupportMail.setTitle | public void setTitle(CharSequence title){
if(mConstruct != null && !mConstruct.getDesign().isMaterial()){
// Modify the dialog's title element
getDialog().setTitle(title);
}else{
if(mTitle != null){
mTitle.setText(title);
}
}
} | java | public void setTitle(CharSequence title){
if(mConstruct != null && !mConstruct.getDesign().isMaterial()){
// Modify the dialog's title element
getDialog().setTitle(title);
}else{
if(mTitle != null){
mTitle.setText(title);
}
}
} | [
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137,208 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/ui/SupportMail.java | SupportMail.setMessage | public void setMessage(CharSequence message){
if(mConstruct != null && !mConstruct.getDesign().isMaterial()){
TextView msgView = (TextView) getDialog().findViewById(R.id.message);
msgView.setText(message);
}else{
if(mMessage != null){
mMessage.setText(message);
}
}
} | java | public void setMessage(CharSequence message){
if(mConstruct != null && !mConstruct.getDesign().isMaterial()){
TextView msgView = (TextView) getDialog().findViewById(R.id.message);
msgView.setText(message);
}else{
if(mMessage != null){
mMessage.setText(message);
}
}
} | [
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137,209 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/ui/SupportMail.java | SupportMail.getButtonPriority | private Integer getButtonPriority(Integer button){
switch (button){
case Dialog.BUTTON_POSITIVE:
return 1;
case Dialog.BUTTON_NEUTRAL:
return 2;
case Dialog.BUTTON_NEGATIVE:
return 3;
default:
return 0;
}
} | java | private Integer getButtonPriority(Integer button){
switch (button){
case Dialog.BUTTON_POSITIVE:
return 1;
case Dialog.BUTTON_NEUTRAL:
return 2;
case Dialog.BUTTON_NEGATIVE:
return 3;
default:
return 0;
}
} | [
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137,210 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/EditTextStyle.java | EditTextStyle.applyDesign | @Override
public void applyDesign(Design design, int themeColor) {
Context ctx = mInputField.getContext();
int smallPadId = design.isMaterial() ? R.dimen.default_margin : R.dimen.default_margin_small;
int largePadId = design.isMaterial() ? R.dimen.material_edittext_spacing : R.dimen.default_margin_small;
int padLR = ctx.getResources().getDimensionPixelSize(largePadId);
int padTB = ctx.getResources().getDimensionPixelSize(smallPadId);
FrameLayout.LayoutParams params = new FrameLayout.LayoutParams(ViewGroup.LayoutParams.MATCH_PARENT, ViewGroup.LayoutParams.WRAP_CONTENT);
params.setMargins(padLR, padTB, padLR, padTB);
mInputField.setLayoutParams(params);
if(design.isLight())
mInputField.setTextColor(mInputField.getResources().getColor(R.color.background_material_dark));
else
mInputField.setTextColor(mInputField.getResources().getColor(R.color.background_material_light));
Drawable drawable;
if(design.isMaterial()) {
drawable = mInputField.getResources().getDrawable(R.drawable.edittext_mtrl_alpha);
}else{
drawable = mInputField.getBackground();
}
drawable.setColorFilter(themeColor, PorterDuff.Mode.SRC_ATOP);
if (Build.VERSION.SDK_INT >= Build.VERSION_CODES.JELLY_BEAN)
mInputField.setBackground(drawable);
else
mInputField.setBackgroundDrawable(drawable);
} | java | @Override
public void applyDesign(Design design, int themeColor) {
Context ctx = mInputField.getContext();
int smallPadId = design.isMaterial() ? R.dimen.default_margin : R.dimen.default_margin_small;
int largePadId = design.isMaterial() ? R.dimen.material_edittext_spacing : R.dimen.default_margin_small;
int padLR = ctx.getResources().getDimensionPixelSize(largePadId);
int padTB = ctx.getResources().getDimensionPixelSize(smallPadId);
FrameLayout.LayoutParams params = new FrameLayout.LayoutParams(ViewGroup.LayoutParams.MATCH_PARENT, ViewGroup.LayoutParams.WRAP_CONTENT);
params.setMargins(padLR, padTB, padLR, padTB);
mInputField.setLayoutParams(params);
if(design.isLight())
mInputField.setTextColor(mInputField.getResources().getColor(R.color.background_material_dark));
else
mInputField.setTextColor(mInputField.getResources().getColor(R.color.background_material_light));
Drawable drawable;
if(design.isMaterial()) {
drawable = mInputField.getResources().getDrawable(R.drawable.edittext_mtrl_alpha);
}else{
drawable = mInputField.getBackground();
}
drawable.setColorFilter(themeColor, PorterDuff.Mode.SRC_ATOP);
if (Build.VERSION.SDK_INT >= Build.VERSION_CODES.JELLY_BEAN)
mInputField.setBackground(drawable);
else
mInputField.setBackgroundDrawable(drawable);
} | [
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137,211 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/EditTextStyle.java | EditTextStyle.onButtonClicked | @Override
public void onButtonClicked(int which, DialogInterface dialogInterface) {
switch (which){
case Dialog.BUTTON_POSITIVE:
if(mListener != null) mListener.onAccepted(getText());
break;
case Dialog.BUTTON_NEGATIVE:
// Do nothing for the negative click
break;
}
} | java | @Override
public void onButtonClicked(int which, DialogInterface dialogInterface) {
switch (which){
case Dialog.BUTTON_POSITIVE:
if(mListener != null) mListener.onAccepted(getText());
break;
case Dialog.BUTTON_NEGATIVE:
// Do nothing for the negative click
break;
}
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137,212 | allengeorge/libraft | libraft-samples/kayvee/src/main/java/io/libraft/kayvee/store/LocalStore.java | LocalStore.get | synchronized KeyValue get(long index, String key) throws KayVeeException {
incrementLastAppliedIndex(index);
String value = entries.get(key);
if (value == null) {
throw new KeyNotFoundException(key);
}
return new KeyValue(key, value);
} | java | synchronized KeyValue get(long index, String key) throws KayVeeException {
incrementLastAppliedIndex(index);
String value = entries.get(key);
if (value == null) {
throw new KeyNotFoundException(key);
}
return new KeyValue(key, value);
} | [
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] | 00d68bb5e68d4020af59df3c8a9a14380108ac89 | https://github.com/allengeorge/libraft/blob/00d68bb5e68d4020af59df3c8a9a14380108ac89/libraft-samples/kayvee/src/main/java/io/libraft/kayvee/store/LocalStore.java#L113-L123 |
137,213 | allengeorge/libraft | libraft-samples/kayvee/src/main/java/io/libraft/kayvee/store/LocalStore.java | LocalStore.set | synchronized KeyValue set(long index, String key, String value) {
incrementLastAppliedIndex(index);
entries.put(key, value);
return new KeyValue(key, entries.get(key));
} | java | synchronized KeyValue set(long index, String key, String value) {
incrementLastAppliedIndex(index);
entries.put(key, value);
return new KeyValue(key, entries.get(key));
} | [
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@param index log index >= 0 associated with this command
@param key non-null (possibly empty) key for which the value should be set
@param value non-null, non-empty value for this key
@return a {@code KeyValue} instance containing the most up-to-date {@code key=>value} pair for {@code key} | [
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] | 00d68bb5e68d4020af59df3c8a9a14380108ac89 | https://github.com/allengeorge/libraft/blob/00d68bb5e68d4020af59df3c8a9a14380108ac89/libraft-samples/kayvee/src/main/java/io/libraft/kayvee/store/LocalStore.java#L150-L156 |
137,214 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/PostOffice.java | PostOffice.applyDefaults | private static void applyDefaults(Delivery.Builder builder){
Stamp defaults = getPostman().defaultStamp;
if(defaults != null){
builder.setDesign(defaults.getDesign())
.setCancelable(defaults.isCancelable())
.setCanceledOnTouchOutside(defaults.isCanceledOnTouchOutside())
.setIcon(defaults.getIcon())
.setThemeColor(defaults.getThemeColor())
.showKeyboardOnDisplay(defaults.isShowKeyboardOnDisplay());
}
} | java | private static void applyDefaults(Delivery.Builder builder){
Stamp defaults = getPostman().defaultStamp;
if(defaults != null){
builder.setDesign(defaults.getDesign())
.setCancelable(defaults.isCancelable())
.setCanceledOnTouchOutside(defaults.isCanceledOnTouchOutside())
.setIcon(defaults.getIcon())
.setThemeColor(defaults.getThemeColor())
.showKeyboardOnDisplay(defaults.isShowKeyboardOnDisplay());
}
} | [
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@param builder the delivery builder to apply defaults to | [
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] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/PostOffice.java#L439-L449 |
137,215 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/widgets/MaterialButtonLayout.java | MaterialButtonLayout.init | private void init(){
MAX_BUTTON_WIDTH = TypedValue.applyDimension(TypedValue.COMPLEX_UNIT_DIP, 124f, getResources().getDisplayMetrics());
MIN_BUTTON_WIDTH = TypedValue.applyDimension(TypedValue.COMPLEX_UNIT_DIP, 88f, getResources().getDisplayMetrics());
} | java | private void init(){
MAX_BUTTON_WIDTH = TypedValue.applyDimension(TypedValue.COMPLEX_UNIT_DIP, 124f, getResources().getDisplayMetrics());
MIN_BUTTON_WIDTH = TypedValue.applyDimension(TypedValue.COMPLEX_UNIT_DIP, 88f, getResources().getDisplayMetrics());
} | [
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137,216 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/model/Delivery.java | Delivery.updateDesign | public void updateDesign(Design design){
mDesign = design;
if(mStyle != null) mStyle.applyDesign(mDesign, mThemeColor);
} | java | public void updateDesign(Design design){
mDesign = design;
if(mStyle != null) mStyle.applyDesign(mDesign, mThemeColor);
} | [
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] | Update the design of this delivery
@param design | [
"Update",
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] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/model/Delivery.java#L298-L301 |
137,217 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java | ProgressStyle.applyDesign | @Override
public void applyDesign(Design design, int themeColor) {
if(mProgressStyle == HORIZONTAL) {
LayerDrawable drawable = (LayerDrawable) mLayout.getResources().getDrawable(R.drawable.progress_material_horizontal);
Drawable bg = drawable.getDrawable(0);
int color = design.isLight() ? R.color.grey_700 : R.color.grey_500;
bg.setColorFilter(mLayout.getResources().getColor(color), PorterDuff.Mode.SRC_ATOP);
Drawable secProg = drawable.getDrawable(1);
secProg.setColorFilter(lighten(themeColor), PorterDuff.Mode.SRC_ATOP);
Drawable prg = drawable.getDrawable(2);
prg.setColorFilter(themeColor, PorterDuff.Mode.SRC_ATOP);
mProgress.setProgressDrawable(drawable);
// Style the indeterminate drawable color
Drawable animDrawable = mProgress.getIndeterminateDrawable();
animDrawable.setColorFilter(themeColor, PorterDuff.Mode.SRC_ATOP);
}
if(design.isLight()){
mProgressText.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_light));
mProgressMax.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_light));
}else{
mProgressText.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_dark));
mProgressMax.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_dark));
}
if(design.isMaterial()){
FontLoader.applyTypeface(mProgressText, Types.ROBOTO_MEDIUM);
FontLoader.applyTypeface(mProgressMax, Types.ROBOTO_MEDIUM);
}
// Style the progress message if available
TextView progressMessage = (TextView) mLayout.findViewById(R.id.progress_mesage);
if(progressMessage != null){
if(design.isMaterial()){
LinearLayout progressContainer = (LinearLayout) mLayout.findViewById(R.id.progress_container);
progressContainer.removeView(progressMessage);
LinearLayout.LayoutParams params = (LinearLayout.LayoutParams) progressMessage.getLayoutParams();
CharSequence text = progressMessage.getText();
if(design.isLight()){
progressMessage = new TextView(mCtx, null, R.style.Widget_PostOffice_Material_Light_Dialog_Message);
}else{
progressMessage = new TextView(mCtx, null, R.style.Widget_PostOffice_Material_Dark_Dialog_Message);
}
// Re Update
progressMessage.setText(text);
// Set the roboto font
FontLoader.applyTypeface(progressMessage, Types.ROBOTO_REGULAR);
// Add it back to the layout
progressContainer.addView(progressMessage, params);
}
}
} | java | @Override
public void applyDesign(Design design, int themeColor) {
if(mProgressStyle == HORIZONTAL) {
LayerDrawable drawable = (LayerDrawable) mLayout.getResources().getDrawable(R.drawable.progress_material_horizontal);
Drawable bg = drawable.getDrawable(0);
int color = design.isLight() ? R.color.grey_700 : R.color.grey_500;
bg.setColorFilter(mLayout.getResources().getColor(color), PorterDuff.Mode.SRC_ATOP);
Drawable secProg = drawable.getDrawable(1);
secProg.setColorFilter(lighten(themeColor), PorterDuff.Mode.SRC_ATOP);
Drawable prg = drawable.getDrawable(2);
prg.setColorFilter(themeColor, PorterDuff.Mode.SRC_ATOP);
mProgress.setProgressDrawable(drawable);
// Style the indeterminate drawable color
Drawable animDrawable = mProgress.getIndeterminateDrawable();
animDrawable.setColorFilter(themeColor, PorterDuff.Mode.SRC_ATOP);
}
if(design.isLight()){
mProgressText.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_light));
mProgressMax.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_light));
}else{
mProgressText.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_dark));
mProgressMax.setTextColor(mLayout.getResources().getColor(R.color.tertiary_text_material_dark));
}
if(design.isMaterial()){
FontLoader.applyTypeface(mProgressText, Types.ROBOTO_MEDIUM);
FontLoader.applyTypeface(mProgressMax, Types.ROBOTO_MEDIUM);
}
// Style the progress message if available
TextView progressMessage = (TextView) mLayout.findViewById(R.id.progress_mesage);
if(progressMessage != null){
if(design.isMaterial()){
LinearLayout progressContainer = (LinearLayout) mLayout.findViewById(R.id.progress_container);
progressContainer.removeView(progressMessage);
LinearLayout.LayoutParams params = (LinearLayout.LayoutParams) progressMessage.getLayoutParams();
CharSequence text = progressMessage.getText();
if(design.isLight()){
progressMessage = new TextView(mCtx, null, R.style.Widget_PostOffice_Material_Light_Dialog_Message);
}else{
progressMessage = new TextView(mCtx, null, R.style.Widget_PostOffice_Material_Dark_Dialog_Message);
}
// Re Update
progressMessage.setText(text);
// Set the roboto font
FontLoader.applyTypeface(progressMessage, Types.ROBOTO_REGULAR);
// Add it back to the layout
progressContainer.addView(progressMessage, params);
}
}
} | [
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"getResources... | Apply the design of a delivery to this style
@param design the design, i.e. Holo, Material, Light, Dark
@param themeColor the theme color | [
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] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java#L102-L168 |
137,218 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java | ProgressStyle.setProgress | public ProgressStyle setProgress(int value){
if(mProgressStyle == HORIZONTAL) {
if (mProgress.isIndeterminate())
mProgress.setIndeterminate(false);
if (mProgress.getMax() <= value)
mProgress.setMax(value);
mProgress.setProgress(value);
if (!mIsPercentageMode) {
mProgressText.setText(String.format("%d %s", value, mSuffix));
} else {
mProgressText.setVisibility(View.GONE);
int progress = mProgress.getProgress();
int max = mProgress.getMax();
float percent = ((float) progress / (float) max);
int percentNorm = (int) (percent * 100);
mProgressMax.setText(String.format("%d %%", percentNorm));
}
if (value >= mProgress.getMax() && mIsCloseOnFinish && mDialogInterface != null) {
new Handler().postDelayed(new Runnable() {
@Override
public void run() {
mDialogInterface.dismiss();
}
}, 300);
}
}
return this;
} | java | public ProgressStyle setProgress(int value){
if(mProgressStyle == HORIZONTAL) {
if (mProgress.isIndeterminate())
mProgress.setIndeterminate(false);
if (mProgress.getMax() <= value)
mProgress.setMax(value);
mProgress.setProgress(value);
if (!mIsPercentageMode) {
mProgressText.setText(String.format("%d %s", value, mSuffix));
} else {
mProgressText.setVisibility(View.GONE);
int progress = mProgress.getProgress();
int max = mProgress.getMax();
float percent = ((float) progress / (float) max);
int percentNorm = (int) (percent * 100);
mProgressMax.setText(String.format("%d %%", percentNorm));
}
if (value >= mProgress.getMax() && mIsCloseOnFinish && mDialogInterface != null) {
new Handler().postDelayed(new Runnable() {
@Override
public void run() {
mDialogInterface.dismiss();
}
}, 300);
}
}
return this;
} | [
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"int",
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"isIndeterminate",
"(",
")",
")",
"mProgress",
".",
"setIndeterminate",
"(",
"false",
")",
";",
... | Set the progress of the progress bar
@param value the progress out of the max
@return self for chaining | [
"Set",
"the",
"progress",
"of",
"the",
"progress",
"bar"
] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java#L287-L325 |
137,219 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java | ProgressStyle.setMax | public ProgressStyle setMax(int value){
if(mProgressStyle == HORIZONTAL) {
if (mProgress.isIndeterminate())
mProgress.setIndeterminate(false);
mProgress.setMax(value);
if (!mIsPercentageMode)
mProgressMax.setText(String.format("%d %s", value, mSuffix));
}
return this;
} | java | public ProgressStyle setMax(int value){
if(mProgressStyle == HORIZONTAL) {
if (mProgress.isIndeterminate())
mProgress.setIndeterminate(false);
mProgress.setMax(value);
if (!mIsPercentageMode)
mProgressMax.setText(String.format("%d %s", value, mSuffix));
}
return this;
} | [
"public",
"ProgressStyle",
"setMax",
"(",
"int",
"value",
")",
"{",
"if",
"(",
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"(",
")",
")",
"mProgress",
".",
"setIndeterminate",
"(",
"false",
")",
";",
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@param value the max value
@return self for chaining | [
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"max",
"total",
"progress",
"of",
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"progress",
"bar"
] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java#L333-L348 |
137,220 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java | ProgressStyle.setIndeterminate | public ProgressStyle setIndeterminate(boolean value){
if(mProgressStyle == HORIZONTAL) {
mProgress.setIndeterminate(value);
mProgressText.setVisibility(value ? View.GONE : View.VISIBLE);
mProgressMax.setVisibility(value ? View.GONE : View.VISIBLE);
}
return this;
} | java | public ProgressStyle setIndeterminate(boolean value){
if(mProgressStyle == HORIZONTAL) {
mProgress.setIndeterminate(value);
mProgressText.setVisibility(value ? View.GONE : View.VISIBLE);
mProgressMax.setVisibility(value ? View.GONE : View.VISIBLE);
}
return this;
} | [
"public",
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"setIndeterminate",
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")",
";",
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"setVisibility",
"(",
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"?",
... | Set this progress as Indeterminate
@param value indeterminate value
@return self for chaining | [
"Set",
"this",
"progress",
"as",
"Indeterminate"
] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java#L356-L363 |
137,221 | r0adkll/PostOffice | library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java | ProgressStyle.lighten | private int lighten(int color){
float[] hsv = new float[3];
Color.colorToHSV(color, hsv);
hsv[2] = 1.0f - 0.8f * (1.0f - hsv[2]);
color = Color.HSVToColor(hsv);
return color;
} | java | private int lighten(int color){
float[] hsv = new float[3];
Color.colorToHSV(color, hsv);
hsv[2] = 1.0f - 0.8f * (1.0f - hsv[2]);
color = Color.HSVToColor(hsv);
return color;
} | [
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... | Get a lighter color for a given color
@param color the color to lighten
@return the lightened color | [
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"lighter",
"color",
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"a",
"given",
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] | f98e365fd66c004ccce64ee87d9f471b97e4e3c2 | https://github.com/r0adkll/PostOffice/blob/f98e365fd66c004ccce64ee87d9f471b97e4e3c2/library/src/main/java/com/r0adkll/postoffice/styles/ProgressStyle.java#L371-L377 |
137,222 | impinj/itemsense-java | src/main/java/com/impinj/itemsense/client/data/itemhistory/ItemHistoryController.java | ItemHistoryController.getItemHistory | @Deprecated
public ItemHistoryResponse getItemHistory(
EpcFormat epcFormat,
String epcPrefix,
String jobId,
String fromZone,
String toZone,
String fromFacility,
String toFacility,
PresenceConfidence presenceConfidence,
String facility,
Integer pageSize, String pageMarker) {
return getItemHistory(
epcFormat,
epcPrefix,
jobId,
fromZone,
toZone,
fromFacility,
toFacility,
null,
null,
null,
null,
pageSize,
pageMarker,
null);
} | java | @Deprecated
public ItemHistoryResponse getItemHistory(
EpcFormat epcFormat,
String epcPrefix,
String jobId,
String fromZone,
String toZone,
String fromFacility,
String toFacility,
PresenceConfidence presenceConfidence,
String facility,
Integer pageSize, String pageMarker) {
return getItemHistory(
epcFormat,
epcPrefix,
jobId,
fromZone,
toZone,
fromFacility,
toFacility,
null,
null,
null,
null,
pageSize,
pageMarker,
null);
} | [
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... | This is deprecated because the parameters do not correspond to the itemsense parameters | [
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] | f5a459dfb6687ff95e29f7cf5b6a8bfda112c96b | https://github.com/impinj/itemsense-java/blob/f5a459dfb6687ff95e29f7cf5b6a8bfda112c96b/src/main/java/com/impinj/itemsense/client/data/itemhistory/ItemHistoryController.java#L94-L122 |
137,223 | impinj/itemsense-java | src/main/java/com/impinj/itemsense/client/data/itemhistory/ItemHistoryController.java | ItemHistoryController.getAllItemHistory | @Deprecated
public ArrayList<ItemHistory> getAllItemHistory(
EpcFormat epcFormat,
String epcPrefix,
String jobId,
String fromZone,
String toZone,
String fromFacility,
String toFacility,
PresenceConfidence presenceConfidence,
String facility,
String pageMarker) {
ItemHistoryResponse response;
String nextPageMarker = "";
int pageSize = 1000;
ArrayList<ItemHistory> items = new ArrayList<>();
do {
response = this.getItemHistory(
epcFormat,
epcPrefix,
jobId,
fromZone,
toZone,
fromFacility,
toFacility,
presenceConfidence,
facility,
pageSize,
nextPageMarker);
if (response.getHistory() != null) {
Collections.addAll(items, response.getHistory());
}
nextPageMarker = response.getNextPageMarker();
} while (nextPageMarker != null && !nextPageMarker.isEmpty());
return items;
} | java | @Deprecated
public ArrayList<ItemHistory> getAllItemHistory(
EpcFormat epcFormat,
String epcPrefix,
String jobId,
String fromZone,
String toZone,
String fromFacility,
String toFacility,
PresenceConfidence presenceConfidence,
String facility,
String pageMarker) {
ItemHistoryResponse response;
String nextPageMarker = "";
int pageSize = 1000;
ArrayList<ItemHistory> items = new ArrayList<>();
do {
response = this.getItemHistory(
epcFormat,
epcPrefix,
jobId,
fromZone,
toZone,
fromFacility,
toFacility,
presenceConfidence,
facility,
pageSize,
nextPageMarker);
if (response.getHistory() != null) {
Collections.addAll(items, response.getHistory());
}
nextPageMarker = response.getNextPageMarker();
} while (nextPageMarker != null && !nextPageMarker.isEmpty());
return items;
} | [
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137,224 | jruby/jcodings | src/org/jcodings/AbstractEncoding.java | AbstractEncoding.propertyNameToCType | @Override
public int propertyNameToCType(byte[]bytes, int p, int end) {
Integer ctype = PosixBracket.PBSTableUpper.get(bytes, p, end);
if (ctype != null) return ctype;
throw new CharacterPropertyException(EncodingError.ERR_INVALID_CHAR_PROPERTY_NAME, bytes, p, end - p);
} | java | @Override
public int propertyNameToCType(byte[]bytes, int p, int end) {
Integer ctype = PosixBracket.PBSTableUpper.get(bytes, p, end);
if (ctype != null) return ctype;
throw new CharacterPropertyException(EncodingError.ERR_INVALID_CHAR_PROPERTY_NAME, bytes, p, end - p);
} | [
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137,225 | jruby/jcodings | src/org/jcodings/transcode/TranscoderDB.java | TranscoderDB.asciiCompatibleEncoding | static byte[] asciiCompatibleEncoding(byte[] asciiCompatName) {
CaseInsensitiveBytesHash<TranscoderDB.Entry> dTable = TranscoderDB.transcoders.get(asciiCompatName);
if (dTable == null || dTable.size() != 1) return null;
byte[] asciiCN = null;
for (Entry e : dTable) {
if (!EConv.decorator(e.source, e.destination)) {
Transcoder transcoder = e.getTranscoder();
if (transcoder != null && transcoder.compatibility.isDecoder()) {
asciiCN = transcoder.destination;
break;
}
}
}
return asciiCN;
} | java | static byte[] asciiCompatibleEncoding(byte[] asciiCompatName) {
CaseInsensitiveBytesHash<TranscoderDB.Entry> dTable = TranscoderDB.transcoders.get(asciiCompatName);
if (dTable == null || dTable.size() != 1) return null;
byte[] asciiCN = null;
for (Entry e : dTable) {
if (!EConv.decorator(e.source, e.destination)) {
Transcoder transcoder = e.getTranscoder();
if (transcoder != null && transcoder.compatibility.isDecoder()) {
asciiCN = transcoder.destination;
break;
}
}
}
return asciiCN;
} | [
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137,226 | jruby/jcodings | src/org/jcodings/util/Hash.java | Hash.checkResize | protected final void checkResize() {
if (size == table.length) { // size / table.length > DENSITY
int forSize = table.length + 1; // size + 1;
for (int i=0, newCapacity = MIN_CAPA; i < PRIMES.length; i++, newCapacity <<= 1) {
if (newCapacity > forSize) {
resize(PRIMES[i]);
return;
}
}
return;
}
} | java | protected final void checkResize() {
if (size == table.length) { // size / table.length > DENSITY
int forSize = table.length + 1; // size + 1;
for (int i=0, newCapacity = MIN_CAPA; i < PRIMES.length; i++, newCapacity <<= 1) {
if (newCapacity > forSize) {
resize(PRIMES[i]);
return;
}
}
return;
}
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137,227 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/index/strtree/STRtreeJGT.java | STRtreeJGT.insert | public void insert( Envelope itemEnv, Object item ) {
if (itemEnv.isNull()) {
return;
}
super.insert(itemEnv, item);
} | java | public void insert( Envelope itemEnv, Object item ) {
if (itemEnv.isNull()) {
return;
}
super.insert(itemEnv, item);
} | [
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137,228 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/hydrogeomorphology/adige/duffy/ADischargeDistributor.java | ADischargeDistributor.calculateSuperficialDischarge | public double calculateSuperficialDischarge( double superficialDischarge,
double saturatedAreaPercentage, long timeInMillis ) {
distributeIncomingSuperficialDischarge(superficialDischarge, saturatedAreaPercentage,
timeInMillis);
return superficialDischargeArray[indexFromTimeInMillis(timeInMillis)];
} | java | public double calculateSuperficialDischarge( double superficialDischarge,
double saturatedAreaPercentage, long timeInMillis ) {
distributeIncomingSuperficialDischarge(superficialDischarge, saturatedAreaPercentage,
timeInMillis);
return superficialDischargeArray[indexFromTimeInMillis(timeInMillis)];
} | [
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</p>
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@param saturatedAreaPercentage the percentage of saturated area.
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137,229 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/hydrogeomorphology/adige/duffy/ADischargeDistributor.java | ADischargeDistributor.calculateSubsuperficialDischarge | public double calculateSubsuperficialDischarge( double subSuperficialDischarge,
double saturatedAreaPercentage, long timeInMillis ) {
distributeIncomingSubSuperficialDischarge(subSuperficialDischarge, saturatedAreaPercentage,
timeInMillis);
return subSuperficialDischargeArray[indexFromTimeInMillis(timeInMillis)];
} | java | public double calculateSubsuperficialDischarge( double subSuperficialDischarge,
double saturatedAreaPercentage, long timeInMillis ) {
distributeIncomingSubSuperficialDischarge(subSuperficialDischarge, saturatedAreaPercentage,
timeInMillis);
return subSuperficialDischargeArray[indexFromTimeInMillis(timeInMillis)];
} | [
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137,230 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/postgis/PGDb.java | PGDb.getDatabases | public static List<String> getDatabases( String host, String port, String existingDb, String user, String pwd )
throws Exception {
if (existingDb == null) {
existingDb = "postgres";
}
String url = EDb.POSTGRES.getJdbcPrefix() + host + ":" + port + "/" + existingDb;
try (Connection connection = DriverManager.getConnection(url, user, pwd)) {
String sql = "SELECT datname FROM pg_database WHERE datistemplate = false;";
List<String> dbs = new ArrayList<>();
try (Statement stmt = connection.createStatement(); ResultSet rs = stmt.executeQuery(sql)) {
while( rs.next() ) {
String dbName = rs.getString(1);
dbs.add(dbName);
}
return dbs;
}
}
} | java | public static List<String> getDatabases( String host, String port, String existingDb, String user, String pwd )
throws Exception {
if (existingDb == null) {
existingDb = "postgres";
}
String url = EDb.POSTGRES.getJdbcPrefix() + host + ":" + port + "/" + existingDb;
try (Connection connection = DriverManager.getConnection(url, user, pwd)) {
String sql = "SELECT datname FROM pg_database WHERE datistemplate = false;";
List<String> dbs = new ArrayList<>();
try (Statement stmt = connection.createStatement(); ResultSet rs = stmt.executeQuery(sql)) {
while( rs.next() ) {
String dbName = rs.getString(1);
dbs.add(dbName);
}
return dbs;
}
}
} | [
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@param user optional user.
@param pwd optional pwd.
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137,231 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/images/ImageUtilities.java | ImageUtilities.scaleImage | public static BufferedImage scaleImage( BufferedImage image, int newSize ) throws Exception {
int imageWidth = image.getWidth();
int imageHeight = image.getHeight();
int width;
int height;
if (imageWidth > imageHeight) {
width = newSize;
height = imageHeight * width / imageWidth;
} else {
height = newSize;
width = height * imageWidth / imageHeight;
}
BufferedImage resizedImage = new BufferedImage(width, height, BufferedImage.TYPE_INT_RGB);
Graphics2D g = resizedImage.createGraphics();
g.drawImage(image, 0, 0, width, height, null);
g.dispose();
return resizedImage;
} | java | public static BufferedImage scaleImage( BufferedImage image, int newSize ) throws Exception {
int imageWidth = image.getWidth();
int imageHeight = image.getHeight();
int width;
int height;
if (imageWidth > imageHeight) {
width = newSize;
height = imageHeight * width / imageWidth;
} else {
height = newSize;
width = height * imageWidth / imageHeight;
}
BufferedImage resizedImage = new BufferedImage(width, height, BufferedImage.TYPE_INT_RGB);
Graphics2D g = resizedImage.createGraphics();
g.drawImage(image, 0, 0, width, height, null);
g.dispose();
return resizedImage;
} | [
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137,232 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/images/ImageUtilities.java | ImageUtilities.imageFromReader | public static BufferedImage imageFromReader( AbstractGridCoverage2DReader reader, int cols, int rows, double w, double e,
double s, double n, CoordinateReferenceSystem resampleCrs ) throws IOException {
CoordinateReferenceSystem sourceCrs = reader.getCoordinateReferenceSystem();
GeneralParameterValue[] readParams = new GeneralParameterValue[1];
Parameter<GridGeometry2D> readGG = new Parameter<GridGeometry2D>(AbstractGridFormat.READ_GRIDGEOMETRY2D);
GridEnvelope2D gridEnvelope = new GridEnvelope2D(0, 0, cols, rows);
DirectPosition2D minDp = new DirectPosition2D(sourceCrs, w, s);
DirectPosition2D maxDp = new DirectPosition2D(sourceCrs, e, n);
Envelope env = new Envelope2D(minDp, maxDp);
readGG.setValue(new GridGeometry2D(gridEnvelope, env));
readParams[0] = readGG;
GridCoverage2D gridCoverage2D = reader.read(readParams);
if (gridCoverage2D == null) {
return null;
}
if (resampleCrs != null) {
gridCoverage2D = (GridCoverage2D) Operations.DEFAULT.resample(gridCoverage2D, resampleCrs);
}
RenderedImage image = gridCoverage2D.getRenderedImage();
if (image instanceof BufferedImage) {
BufferedImage bImage = (BufferedImage) image;
return bImage;
} else {
ColorModel cm = image.getColorModel();
int width = image.getWidth();
int height = image.getHeight();
WritableRaster raster = cm.createCompatibleWritableRaster(width, height);
boolean isAlphaPremultiplied = cm.isAlphaPremultiplied();
Hashtable properties = new Hashtable();
String[] keys = image.getPropertyNames();
if (keys != null) {
for( int i = 0; i < keys.length; i++ ) {
properties.put(keys[i], image.getProperty(keys[i]));
}
}
BufferedImage result = new BufferedImage(cm, raster, isAlphaPremultiplied, properties);
image.copyData(raster);
return result;
}
} | java | public static BufferedImage imageFromReader( AbstractGridCoverage2DReader reader, int cols, int rows, double w, double e,
double s, double n, CoordinateReferenceSystem resampleCrs ) throws IOException {
CoordinateReferenceSystem sourceCrs = reader.getCoordinateReferenceSystem();
GeneralParameterValue[] readParams = new GeneralParameterValue[1];
Parameter<GridGeometry2D> readGG = new Parameter<GridGeometry2D>(AbstractGridFormat.READ_GRIDGEOMETRY2D);
GridEnvelope2D gridEnvelope = new GridEnvelope2D(0, 0, cols, rows);
DirectPosition2D minDp = new DirectPosition2D(sourceCrs, w, s);
DirectPosition2D maxDp = new DirectPosition2D(sourceCrs, e, n);
Envelope env = new Envelope2D(minDp, maxDp);
readGG.setValue(new GridGeometry2D(gridEnvelope, env));
readParams[0] = readGG;
GridCoverage2D gridCoverage2D = reader.read(readParams);
if (gridCoverage2D == null) {
return null;
}
if (resampleCrs != null) {
gridCoverage2D = (GridCoverage2D) Operations.DEFAULT.resample(gridCoverage2D, resampleCrs);
}
RenderedImage image = gridCoverage2D.getRenderedImage();
if (image instanceof BufferedImage) {
BufferedImage bImage = (BufferedImage) image;
return bImage;
} else {
ColorModel cm = image.getColorModel();
int width = image.getWidth();
int height = image.getHeight();
WritableRaster raster = cm.createCompatibleWritableRaster(width, height);
boolean isAlphaPremultiplied = cm.isAlphaPremultiplied();
Hashtable properties = new Hashtable();
String[] keys = image.getPropertyNames();
if (keys != null) {
for( int i = 0; i < keys.length; i++ ) {
properties.put(keys[i], image.getProperty(keys[i]));
}
}
BufferedImage result = new BufferedImage(cm, raster, isAlphaPremultiplied, properties);
image.copyData(raster);
return result;
}
} | [
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137,233 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/images/ImageUtilities.java | ImageUtilities.makeColorTransparent | public static BufferedImage makeColorTransparent( BufferedImage bufferedImageToProcess, final Color colorToMakeTransparent ) {
ImageFilter filter = new RGBImageFilter(){
public int markerRGB = colorToMakeTransparent.getRGB() | 0xFF000000;
public final int filterRGB( int x, int y, int rgb ) {
if ((rgb | 0xFF000000) == markerRGB) {
// Mark the alpha bits as zero - transparent
return 0x00FFFFFF & rgb;
} else {
return rgb;
}
}
};
ImageProducer ip = new FilteredImageSource(bufferedImageToProcess.getSource(), filter);
Image image = Toolkit.getDefaultToolkit().createImage(ip);
BufferedImage bufferedImage = new BufferedImage(image.getWidth(null), image.getHeight(null), BufferedImage.TYPE_INT_ARGB);
Graphics2D g2 = bufferedImage.createGraphics();
g2.drawImage(image, 0, 0, null);
g2.dispose();
return bufferedImage;
} | java | public static BufferedImage makeColorTransparent( BufferedImage bufferedImageToProcess, final Color colorToMakeTransparent ) {
ImageFilter filter = new RGBImageFilter(){
public int markerRGB = colorToMakeTransparent.getRGB() | 0xFF000000;
public final int filterRGB( int x, int y, int rgb ) {
if ((rgb | 0xFF000000) == markerRGB) {
// Mark the alpha bits as zero - transparent
return 0x00FFFFFF & rgb;
} else {
return rgb;
}
}
};
ImageProducer ip = new FilteredImageSource(bufferedImageToProcess.getSource(), filter);
Image image = Toolkit.getDefaultToolkit().createImage(ip);
BufferedImage bufferedImage = new BufferedImage(image.getWidth(null), image.getHeight(null), BufferedImage.TYPE_INT_ARGB);
Graphics2D g2 = bufferedImage.createGraphics();
g2.drawImage(image, 0, 0, null);
g2.dispose();
return bufferedImage;
} | [
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@param colorToMakeTransparent the color to make transparent.
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137,234 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/images/ImageUtilities.java | ImageUtilities.isAllOneColor | public static boolean isAllOneColor( BufferedImage image ) {
int width = image.getWidth();
int height = image.getHeight();
int previousRgb = 0;
boolean isFirst = true;
for( int x = 0; x < width; x++ ) {
for( int y = 0; y < height; y++ ) {
int rgb = image.getRGB(x, y);
if (isFirst) {
isFirst = false;
} else {
if (rgb != previousRgb) {
return false;
}
}
previousRgb = rgb;
}
}
return true;
} | java | public static boolean isAllOneColor( BufferedImage image ) {
int width = image.getWidth();
int height = image.getHeight();
int previousRgb = 0;
boolean isFirst = true;
for( int x = 0; x < width; x++ ) {
for( int y = 0; y < height; y++ ) {
int rgb = image.getRGB(x, y);
if (isFirst) {
isFirst = false;
} else {
if (rgb != previousRgb) {
return false;
}
}
previousRgb = rgb;
}
}
return true;
} | [
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@param image the image to check.
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137,235 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/template/TemplateTokenGroupInfo.java | TemplateTokenGroupInfo.setParentGroups | public void setParentGroups(final List<TemplateTokenInfo> tokenInfos) {
// inefficient, perhaps should look into being provided a map of tokenInfos
// - keep double itterator for now as
// probably irrelevant in the face of speed as a whole
for (final String tokenName : containsString) {
for (final TemplateTokenInfo tokenInfo : tokenInfos) {
if (tokenName.equals(tokenInfo.getName())) {
tokenInfo.setParentGroup(this);
break;
}
}
}
} | java | public void setParentGroups(final List<TemplateTokenInfo> tokenInfos) {
// inefficient, perhaps should look into being provided a map of tokenInfos
// - keep double itterator for now as
// probably irrelevant in the face of speed as a whole
for (final String tokenName : containsString) {
for (final TemplateTokenInfo tokenInfo : tokenInfos) {
if (tokenName.equals(tokenInfo.getName())) {
tokenInfo.setParentGroup(this);
break;
}
}
}
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@param tokenInfos | [
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137,236 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/trento_p/OmsTrentoPProjectFilesGenerator.java | OmsTrentoPProjectFilesGenerator.getCalibrationFeatureType | private SimpleFeatureType getCalibrationFeatureType( CoordinateReferenceSystem crs ) {
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
ITrentoPType[] values = TrentoPFeatureType.PipesTrentoP.values();
String typeName = values[0].getName();
b.setName(typeName);
b.setCRS(crs);
b.add("the_geom", LineString.class);
// create ID attribute.
b.add(values[0].getAttributeName(), values[0].getClazz());
// create drain area attribute.
b.add(values[2].getAttributeName(), values[2].getClazz());
// create the percentage area.
b.add(values[11].getAttributeName(), values[12].getClazz());
// The upstream elevation of the node.
b.add(values[3].getAttributeName(), values[3].getClazz());
// The downstream elevation of the land.
b.add(values[4].getAttributeName(), values[4].getClazz());
// runoff coefficent.
b.add(values[5].getAttributeName(), values[5].getClazz());
// average residence time.
b.add(values[6].getAttributeName(), values[6].getClazz());
// ks
b.add(values[7].getAttributeName(), values[7].getClazz());
// average slope
b.add(values[10].getAttributeName(), values[10].getClazz());
// diameter to verify
b.add(values[19].getAttributeName(), values[11].getClazz());
return b.buildFeatureType();
} | java | private SimpleFeatureType getCalibrationFeatureType( CoordinateReferenceSystem crs ) {
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
ITrentoPType[] values = TrentoPFeatureType.PipesTrentoP.values();
String typeName = values[0].getName();
b.setName(typeName);
b.setCRS(crs);
b.add("the_geom", LineString.class);
// create ID attribute.
b.add(values[0].getAttributeName(), values[0].getClazz());
// create drain area attribute.
b.add(values[2].getAttributeName(), values[2].getClazz());
// create the percentage area.
b.add(values[11].getAttributeName(), values[12].getClazz());
// The upstream elevation of the node.
b.add(values[3].getAttributeName(), values[3].getClazz());
// The downstream elevation of the land.
b.add(values[4].getAttributeName(), values[4].getClazz());
// runoff coefficent.
b.add(values[5].getAttributeName(), values[5].getClazz());
// average residence time.
b.add(values[6].getAttributeName(), values[6].getClazz());
// ks
b.add(values[7].getAttributeName(), values[7].getClazz());
// average slope
b.add(values[10].getAttributeName(), values[10].getClazz());
// diameter to verify
b.add(values[19].getAttributeName(), values[11].getClazz());
return b.buildFeatureType();
} | [
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@param crs
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/hmachine/src/main/java/org/hortonmachine/hmachine/modules/networktools/trento_p/OmsTrentoPProjectFilesGenerator.java#L229-L257 |
137,237 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.joinByComma | public static String joinByComma( List<String> items ) {
StringBuilder sb = new StringBuilder();
for( String item : items ) {
sb.append(",").append(item);
}
if (sb.length() == 0) {
return "";
}
return sb.substring(1);
} | java | public static String joinByComma( List<String> items ) {
StringBuilder sb = new StringBuilder();
for( String item : items ) {
sb.append(",").append(item);
}
if (sb.length() == 0) {
return "";
}
return sb.substring(1);
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java#L81-L90 |
137,238 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.joinBySeparator | public static String joinBySeparator( List<String> items, String separator ) {
int size = items.size();
if (size == 0) {
return "";
}
StringBuilder sb = new StringBuilder(items.get(0));
for( int i = 1; i < size; i++ ) {
sb.append(separator).append(items.get(i));
}
return sb.toString();
} | java | public static String joinBySeparator( List<String> items, String separator ) {
int size = items.size();
if (size == 0) {
return "";
}
StringBuilder sb = new StringBuilder(items.get(0));
for( int i = 1; i < size; i++ ) {
sb.append(separator).append(items.get(i));
}
return sb.toString();
} | [
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137,239 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.createPolygonFromEnvelope | public static Polygon createPolygonFromEnvelope( Envelope env ) {
double minX = env.getMinX();
double minY = env.getMinY();
double maxY = env.getMaxY();
double maxX = env.getMaxX();
Coordinate[] c = new Coordinate[]{new Coordinate(minX, minY), new Coordinate(minX, maxY), new Coordinate(maxX, maxY),
new Coordinate(maxX, minY), new Coordinate(minX, minY)};
return gf().createPolygon(c);
} | java | public static Polygon createPolygonFromEnvelope( Envelope env ) {
double minX = env.getMinX();
double minY = env.getMinY();
double maxY = env.getMaxY();
double maxX = env.getMaxX();
Coordinate[] c = new Coordinate[]{new Coordinate(minX, minY), new Coordinate(minX, maxY), new Coordinate(maxX, maxY),
new Coordinate(maxX, minY), new Coordinate(minX, minY)};
return gf().createPolygon(c);
} | [
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137,240 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.createPolygonFromBounds | public static Polygon createPolygonFromBounds( double minX, double minY, double maxX, double maxY ) {
Coordinate[] c = new Coordinate[]{new Coordinate(minX, minY), new Coordinate(minX, maxY), new Coordinate(maxX, maxY),
new Coordinate(maxX, minY), new Coordinate(minX, minY)};
return gf().createPolygon(c);
} | java | public static Polygon createPolygonFromBounds( double minX, double minY, double maxX, double maxY ) {
Coordinate[] c = new Coordinate[]{new Coordinate(minX, minY), new Coordinate(minX, maxY), new Coordinate(maxX, maxY),
new Coordinate(maxX, minY), new Coordinate(minX, minY)};
return gf().createPolygon(c);
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137,241 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.getSelectQuery | public static String getSelectQuery( ASpatialDb db, final TableLevel selectedTable, boolean geomFirst ) throws Exception {
String tableName = selectedTable.tableName;
String letter = tableName.substring(0, 1);
List<String[]> tableColumns = db.getTableColumns(tableName);
GeometryColumn geometryColumns = db.getGeometryColumnsForTable(tableName);
String query = "SELECT ";
if (geomFirst) {
// first geom
List<String> nonGeomCols = new ArrayList<String>();
for( int i = 0; i < tableColumns.size(); i++ ) {
String colName = tableColumns.get(i)[0];
if (geometryColumns != null && colName.equals(geometryColumns.geometryColumnName)) {
colName = letter + "." + colName + " as " + colName;
query += colName;
} else {
nonGeomCols.add(colName);
}
}
// then others
for( int i = 0; i < nonGeomCols.size(); i++ ) {
String colName = tableColumns.get(i)[0];
query += "," + letter + "." + colName;
}
} else {
for( int i = 0; i < tableColumns.size(); i++ ) {
if (i > 0)
query += ",";
String colName = tableColumns.get(i)[0];
if (geometryColumns != null && colName.equals(geometryColumns.geometryColumnName)) {
colName = letter + "." + colName + " as " + colName;
query += colName;
} else {
query += letter + "." + colName;
}
}
}
query += " FROM " + tableName + " " + letter;
return query;
} | java | public static String getSelectQuery( ASpatialDb db, final TableLevel selectedTable, boolean geomFirst ) throws Exception {
String tableName = selectedTable.tableName;
String letter = tableName.substring(0, 1);
List<String[]> tableColumns = db.getTableColumns(tableName);
GeometryColumn geometryColumns = db.getGeometryColumnsForTable(tableName);
String query = "SELECT ";
if (geomFirst) {
// first geom
List<String> nonGeomCols = new ArrayList<String>();
for( int i = 0; i < tableColumns.size(); i++ ) {
String colName = tableColumns.get(i)[0];
if (geometryColumns != null && colName.equals(geometryColumns.geometryColumnName)) {
colName = letter + "." + colName + " as " + colName;
query += colName;
} else {
nonGeomCols.add(colName);
}
}
// then others
for( int i = 0; i < nonGeomCols.size(); i++ ) {
String colName = tableColumns.get(i)[0];
query += "," + letter + "." + colName;
}
} else {
for( int i = 0; i < tableColumns.size(); i++ ) {
if (i > 0)
query += ",";
String colName = tableColumns.get(i)[0];
if (geometryColumns != null && colName.equals(geometryColumns.geometryColumnName)) {
colName = letter + "." + colName + " as " + colName;
query += colName;
} else {
query += letter + "." + colName;
}
}
}
query += " FROM " + tableName + " " + letter;
return query;
} | [
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@param db the db.
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@return the query.
@throws Exception | [
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137,242 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.queryToMap | public static Map<String, String> queryToMap( ADb db, String sql, Map<String, String> optionalType ) throws Exception {
Map<String, String> map = optionalType;
if (map == null) {
map = new HashMap<>();
}
Map<String, String> _map = map;
return db.execOnConnection(connection -> {
try (IHMStatement stmt = connection.createStatement(); IHMResultSet rs = stmt.executeQuery(sql)) {
while( rs.next() ) {
String key = rs.getObject(1).toString();
String value = rs.getObject(2).toString();
_map.put(key, value);
}
return _map;
}
});
} | java | public static Map<String, String> queryToMap( ADb db, String sql, Map<String, String> optionalType ) throws Exception {
Map<String, String> map = optionalType;
if (map == null) {
map = new HashMap<>();
}
Map<String, String> _map = map;
return db.execOnConnection(connection -> {
try (IHMStatement stmt = connection.createStatement(); IHMResultSet rs = stmt.executeQuery(sql)) {
while( rs.next() ) {
String key = rs.getObject(1).toString();
String value = rs.getObject(2).toString();
_map.put(key, value);
}
return _map;
}
});
} | [
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137,243 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/utils/DbsUtilities.java | DbsUtilities.queryToGeomMap | public static Map<String, Geometry> queryToGeomMap( ADb db, String sql, Map<String, Geometry> optionalType )
throws Exception {
Map<String, Geometry> map = optionalType;
if (map == null) {
map = new HashMap<>();
}
IGeometryParser gp = db.getType().getGeometryParser();
Map<String, Geometry> _map = map;
return db.execOnConnection(connection -> {
try (IHMStatement stmt = connection.createStatement(); IHMResultSet rs = stmt.executeQuery(sql)) {
while( rs.next() ) {
String key = rs.getObject(1).toString();
Geometry geometry = gp.fromResultSet(rs, 2);
_map.put(key, geometry);
}
return _map;
}
});
} | java | public static Map<String, Geometry> queryToGeomMap( ADb db, String sql, Map<String, Geometry> optionalType )
throws Exception {
Map<String, Geometry> map = optionalType;
if (map == null) {
map = new HashMap<>();
}
IGeometryParser gp = db.getType().getGeometryParser();
Map<String, Geometry> _map = map;
return db.execOnConnection(connection -> {
try (IHMStatement stmt = connection.createStatement(); IHMResultSet rs = stmt.executeQuery(sql)) {
while( rs.next() ) {
String key = rs.getObject(1).toString();
Geometry geometry = gp.fromResultSet(rs, 2);
_map.put(key, geometry);
}
return _map;
}
});
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137,244 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/libs/modules/Node.java | Node.getFloatValueFromMap | public float getFloatValueFromMap( RandomIter map ) {
try {
if (map == null) {
return HMConstants.floatNovalue;
}
float value = map.getSampleFloat(col, row, 0);
return value;
} catch (Exception e) {
// ignore and return novalue
return HMConstants.floatNovalue;
}
} | java | public float getFloatValueFromMap( RandomIter map ) {
try {
if (map == null) {
return HMConstants.floatNovalue;
}
float value = map.getSampleFloat(col, row, 0);
return value;
} catch (Exception e) {
// ignore and return novalue
return HMConstants.floatNovalue;
}
} | [
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137,245 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/libs/modules/Node.java | Node.getIntValueFromMap | public int getIntValueFromMap( RandomIter map ) {
try {
if (map == null) {
return HMConstants.intNovalue;
}
int value = map.getSample(col, row, 0);
return value;
} catch (Exception e) {
// ignore and return novalue
return HMConstants.intNovalue;
}
} | java | public int getIntValueFromMap( RandomIter map ) {
try {
if (map == null) {
return HMConstants.intNovalue;
}
int value = map.getSample(col, row, 0);
return value;
} catch (Exception e) {
// ignore and return novalue
return HMConstants.intNovalue;
}
} | [
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137,246 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/libs/modules/Node.java | Node.getDoubleValueFromMap | public double getDoubleValueFromMap( RandomIter map ) {
try {
if (map == null) {
return HMConstants.doubleNovalue;
}
double value = map.getSampleDouble(col, row, 0);
return value;
} catch (Exception e) {
// ignore and return novalue
return HMConstants.doubleNovalue;
}
} | java | public double getDoubleValueFromMap( RandomIter map ) {
try {
if (map == null) {
return HMConstants.doubleNovalue;
}
double value = map.getSampleDouble(col, row, 0);
return value;
} catch (Exception e) {
// ignore and return novalue
return HMConstants.doubleNovalue;
}
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137,247 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/libs/modules/Node.java | Node.setFloatValueInMap | public void setFloatValueInMap( WritableRandomIter map, float value ) {
if (map == null) {
return;
}
try {
map.setSample(col, row, 0, value);
} catch (Exception e) {
e.printStackTrace();
}
} | java | public void setFloatValueInMap( WritableRandomIter map, float value ) {
if (map == null) {
return;
}
try {
map.setSample(col, row, 0, value);
} catch (Exception e) {
e.printStackTrace();
}
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137,248 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.getNorth | public double getNorth() {
Double n = get(NORTH);
if (n != null) {
return n;
}
return HMConstants.doubleNovalue;
} | java | public double getNorth() {
Double n = get(NORTH);
if (n != null) {
return n;
}
return HMConstants.doubleNovalue;
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137,249 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.getSouth | public double getSouth() {
Double s = get(SOUTH);
if (s != null) {
return s;
}
return HMConstants.doubleNovalue;
} | java | public double getSouth() {
Double s = get(SOUTH);
if (s != null) {
return s;
}
return HMConstants.doubleNovalue;
} | [
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137,250 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.getEast | public double getEast() {
Double e = get(EAST);
if (e != null) {
return e;
}
return HMConstants.doubleNovalue;
} | java | public double getEast() {
Double e = get(EAST);
if (e != null) {
return e;
}
return HMConstants.doubleNovalue;
} | [
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137,251 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.getWest | public double getWest() {
Double w = get(WEST);
if (w != null) {
return w;
}
return HMConstants.doubleNovalue;
} | java | public double getWest() {
Double w = get(WEST);
if (w != null) {
return w;
}
return HMConstants.doubleNovalue;
} | [
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137,252 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.getXres | public double getXres() {
Double xres = get(XRES);
if (xres != null) {
return xres;
}
return HMConstants.doubleNovalue;
} | java | public double getXres() {
Double xres = get(XRES);
if (xres != null) {
return xres;
}
return HMConstants.doubleNovalue;
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java#L129-L135 |
137,253 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.getYres | public double getYres() {
Double yres = get(YRES);
if (yres != null) {
return yres;
}
return HMConstants.doubleNovalue;
} | java | public double getYres() {
Double yres = get(YRES);
if (yres != null) {
return yres;
}
return HMConstants.doubleNovalue;
} | [
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137,254 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/RegionMap.java | RegionMap.toEnvelope | public Envelope toEnvelope() {
Envelope env = new Envelope(getWest(), getEast(), getSouth(), getNorth());
return env;
} | java | public Envelope toEnvelope() {
Envelope env = new Envelope(getWest(), getEast(), getSouth(), getNorth());
return env;
} | [
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137,255 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/GeopaparazziUtilities.java | GeopaparazziUtilities.getProjectMetadata | public static LinkedHashMap<String, String> getProjectMetadata( IHMConnection connection ) throws Exception {
LinkedHashMap<String, String> metadataMap = new LinkedHashMap<>();
try (IHMStatement statement = connection.createStatement()) {
statement.setQueryTimeout(30); // set timeout to 30 sec.
String sql = "select " + MetadataTableFields.COLUMN_KEY.getFieldName() + ", " + //
MetadataTableFields.COLUMN_VALUE.getFieldName() + " from " + TABLE_METADATA;
IHMResultSet rs = statement.executeQuery(sql);
while( rs.next() ) {
String key = rs.getString(MetadataTableFields.COLUMN_KEY.getFieldName());
String value = rs.getString(MetadataTableFields.COLUMN_VALUE.getFieldName());
if (!key.endsWith("ts")) {
metadataMap.put(key, value);
} else {
try {
long ts = Long.parseLong(value);
String dateTimeString = ETimeUtilities.INSTANCE.TIME_FORMATTER_LOCAL.format(new Date(ts));
metadataMap.put(key, dateTimeString);
} catch (Exception e) {
metadataMap.put(key, value);
}
}
}
}
return metadataMap;
} | java | public static LinkedHashMap<String, String> getProjectMetadata( IHMConnection connection ) throws Exception {
LinkedHashMap<String, String> metadataMap = new LinkedHashMap<>();
try (IHMStatement statement = connection.createStatement()) {
statement.setQueryTimeout(30); // set timeout to 30 sec.
String sql = "select " + MetadataTableFields.COLUMN_KEY.getFieldName() + ", " + //
MetadataTableFields.COLUMN_VALUE.getFieldName() + " from " + TABLE_METADATA;
IHMResultSet rs = statement.executeQuery(sql);
while( rs.next() ) {
String key = rs.getString(MetadataTableFields.COLUMN_KEY.getFieldName());
String value = rs.getString(MetadataTableFields.COLUMN_VALUE.getFieldName());
if (!key.endsWith("ts")) {
metadataMap.put(key, value);
} else {
try {
long ts = Long.parseLong(value);
String dateTimeString = ETimeUtilities.INSTANCE.TIME_FORMATTER_LOCAL.format(new Date(ts));
metadataMap.put(key, dateTimeString);
} catch (Exception e) {
metadataMap.put(key, value);
}
}
}
}
return metadataMap;
} | [
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137,256 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/rasterlite/Rasterlite2Coverage.java | Rasterlite2Coverage.getRL2Image | public byte[] getRL2Image( Geometry geom, String geomEpsg, int width, int height ) throws Exception {
String sql;
String rasterName = getName();
if (geomEpsg != null) {
sql = "select GetMapImageFromRaster('" + rasterName + "', ST_Transform(ST_GeomFromText('" + geom.toText() + "', "
+ geomEpsg + "), " + srid + ") , " + width + " , " + height
+ ", 'default', 'image/png', '#ffffff', 0, 80, 1 )";
} else {
sql = "select GetMapImageFromRaster('" + rasterName + "', ST_GeomFromText('" + geom.toText() + "') , " + width + " , "
+ height + ", 'default', 'image/png', '#ffffff', 0, 80, 1 )";
}
return database.execOnConnection(mConn -> {
try (IHMStatement stmt = mConn.createStatement()) {
IHMResultSet resultSet = stmt.executeQuery(sql);
if (resultSet.next()) {
byte[] bytes = resultSet.getBytes(1);
return bytes;
}
}
return null;
});
} | java | public byte[] getRL2Image( Geometry geom, String geomEpsg, int width, int height ) throws Exception {
String sql;
String rasterName = getName();
if (geomEpsg != null) {
sql = "select GetMapImageFromRaster('" + rasterName + "', ST_Transform(ST_GeomFromText('" + geom.toText() + "', "
+ geomEpsg + "), " + srid + ") , " + width + " , " + height
+ ", 'default', 'image/png', '#ffffff', 0, 80, 1 )";
} else {
sql = "select GetMapImageFromRaster('" + rasterName + "', ST_GeomFromText('" + geom.toText() + "') , " + width + " , "
+ height + ", 'default', 'image/png', '#ffffff', 0, 80, 1 )";
}
return database.execOnConnection(mConn -> {
try (IHMStatement stmt = mConn.createStatement()) {
IHMResultSet resultSet = stmt.executeQuery(sql);
if (resultSet.next()) {
byte[] bytes = resultSet.getBytes(1);
return bytes;
}
}
return null;
});
} | [
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137,257 | TheHortonMachine/hortonmachine | hmachine/src/main/java/org/hortonmachine/hmachine/modules/statistics/cb/OmsCb.java | OmsCb.process | @Execute
public void process() throws Exception {
if (!concatOr(outCb == null, doReset)) {
return;
}
checkNull(inRaster1);
RenderedImage map1RI = inRaster1.getRenderedImage();
RenderedImage map2RI = null;
if (inRaster2 == null) {
map2RI = map1RI;
} else {
map2RI = inRaster2.getRenderedImage();
}
outCb = new CoupledFieldsMoments().process(map1RI, map2RI, pBins, pFirst, pLast, pm, binmode);
} | java | @Execute
public void process() throws Exception {
if (!concatOr(outCb == null, doReset)) {
return;
}
checkNull(inRaster1);
RenderedImage map1RI = inRaster1.getRenderedImage();
RenderedImage map2RI = null;
if (inRaster2 == null) {
map2RI = map1RI;
} else {
map2RI = inRaster2.getRenderedImage();
}
outCb = new CoupledFieldsMoments().process(map1RI, map2RI, pBins, pFirst, pLast, pm, binmode);
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/hmachine/src/main/java/org/hortonmachine/hmachine/modules/statistics/cb/OmsCb.java#L91-L106 |
137,258 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.readFileToBytes | public static byte[] readFileToBytes( String filePath ) throws IOException {
Path path = Paths.get(filePath);
byte[] bytes = Files.readAllBytes(path);
return bytes;
} | java | public static byte[] readFileToBytes( String filePath ) throws IOException {
Path path = Paths.get(filePath);
byte[] bytes = Files.readAllBytes(path);
return bytes;
} | [
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137,259 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.readFile | public static String readFile( File file ) throws IOException {
if (!file.exists()) {
throw new FileNotFoundException("The required projection file is not available: " + file.getAbsolutePath());
}
try (BufferedReader br = new BufferedReader(new FileReader(file))) {
StringBuilder sb = new StringBuilder(200);
String line;
while( (line = br.readLine()) != null ) {
sb.append(line);
sb.append("\n"); //$NON-NLS-1$
}
return sb.toString();
}
} | java | public static String readFile( File file ) throws IOException {
if (!file.exists()) {
throw new FileNotFoundException("The required projection file is not available: " + file.getAbsolutePath());
}
try (BufferedReader br = new BufferedReader(new FileReader(file))) {
StringBuilder sb = new StringBuilder(200);
String line;
while( (line = br.readLine()) != null ) {
sb.append(line);
sb.append("\n"); //$NON-NLS-1$
}
return sb.toString();
}
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137,260 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.readFileToLinesList | public static List<String> readFileToLinesList( File file ) throws IOException {
List<String> lines = new ArrayList<>();
try (BufferedReader br = new BufferedReader(new FileReader(file))) {
String line;
while( (line = br.readLine()) != null ) {
lines.add(line);
}
return lines;
}
} | java | public static List<String> readFileToLinesList( File file ) throws IOException {
List<String> lines = new ArrayList<>();
try (BufferedReader br = new BufferedReader(new FileReader(file))) {
String line;
while( (line = br.readLine()) != null ) {
lines.add(line);
}
return lines;
}
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137,261 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.writeFile | public static void writeFile( String text, File file ) throws IOException {
try (BufferedWriter bw = new BufferedWriter(new FileWriter(file))) {
bw.write(text);
}
} | java | public static void writeFile( String text, File file ) throws IOException {
try (BufferedWriter bw = new BufferedWriter(new FileWriter(file))) {
bw.write(text);
}
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137,262 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.substituteExtention | public static File substituteExtention( File file, String newExtention ) {
String path = file.getAbsolutePath();
int lastDot = path.lastIndexOf("."); //$NON-NLS-1$
if (lastDot == -1) {
path = path + "." + newExtention; //$NON-NLS-1$
} else {
path = path.substring(0, lastDot) + "." + newExtention; //$NON-NLS-1$
}
return new File(path);
} | java | public static File substituteExtention( File file, String newExtention ) {
String path = file.getAbsolutePath();
int lastDot = path.lastIndexOf("."); //$NON-NLS-1$
if (lastDot == -1) {
path = path + "." + newExtention; //$NON-NLS-1$
} else {
path = path.substring(0, lastDot) + "." + newExtention; //$NON-NLS-1$
}
return new File(path);
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137,263 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.getSafeFileName | public static String getSafeFileName( String fileName ) {
// not allowed chars in win and linux
char[] notAllowed = new char[]{'/', '>', '<', ':', '"', '/', '\\', '|', '?', '*'};
char escape = '_';
int len = fileName.length();
StringBuilder sb = new StringBuilder(len);
for( int i = 0; i < len; i++ ) {
char ch = fileName.charAt(i);
boolean trapped = false;
for( char forbidden : notAllowed ) {
if (ch == forbidden) {
sb.append(escape);
trapped = true;
break;
}
}
if (!trapped) {
sb.append(ch);
}
}
String newName = sb.toString();
// no space at end is allowed
newName = newName.trim();
// win doesn't allow dots at the end
if (newName.endsWith(".")) {
newName = newName.substring(0, newName.length() - 1);
}
// reserved words for windows
String[] reservedWindows = {"CON", "PRN", "AUX", "NUL", "COM1", "COM2", "COM3", "COM4", "COM5", "COM6", "COM7", "COM8",
"COM9", "LPT1", "LPT2", "LPT3", "LPT4", "LPT5", "LPT6", "LPT7", "LPT8", "LPT9"};
for( String reservedWin : reservedWindows ) {
if (newName.equals(reservedWin)) {
newName = newName + "_";
break;
}
}
return newName;
} | java | public static String getSafeFileName( String fileName ) {
// not allowed chars in win and linux
char[] notAllowed = new char[]{'/', '>', '<', ':', '"', '/', '\\', '|', '?', '*'};
char escape = '_';
int len = fileName.length();
StringBuilder sb = new StringBuilder(len);
for( int i = 0; i < len; i++ ) {
char ch = fileName.charAt(i);
boolean trapped = false;
for( char forbidden : notAllowed ) {
if (ch == forbidden) {
sb.append(escape);
trapped = true;
break;
}
}
if (!trapped) {
sb.append(ch);
}
}
String newName = sb.toString();
// no space at end is allowed
newName = newName.trim();
// win doesn't allow dots at the end
if (newName.endsWith(".")) {
newName = newName.substring(0, newName.length() - 1);
}
// reserved words for windows
String[] reservedWindows = {"CON", "PRN", "AUX", "NUL", "COM1", "COM2", "COM3", "COM4", "COM5", "COM6", "COM7", "COM8",
"COM9", "LPT1", "LPT2", "LPT3", "LPT4", "LPT5", "LPT6", "LPT7", "LPT8", "LPT9"};
for( String reservedWin : reservedWindows ) {
if (newName.equals(reservedWin)) {
newName = newName + "_";
break;
}
}
return newName;
} | [
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137,264 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/files/FileUtilities.java | FileUtilities.getFilesListByExtention | public static File[] getFilesListByExtention( String folderPath, final String ext ) {
File[] files = new File(folderPath).listFiles(new FilenameFilter(){
public boolean accept( File dir, String name ) {
return name.endsWith(ext);
}
});
return files;
} | java | public static File[] getFilesListByExtention( String folderPath, final String ext ) {
File[] files = new File(folderPath).listFiles(new FilenameFilter(){
public boolean accept( File dir, String name ) {
return name.endsWith(ext);
}
});
return files;
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137,265 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.getLasFileVersion | public static String getLasFileVersion( File lasFile ) throws IOException {
FileInputStream fis = null;
FileChannel fc = null;
try {
fis = new FileInputStream(lasFile);
fc = fis.getChannel();
// Version Major
fis.skip(24);
int versionMajor = fis.read();
// Version Minor
int versionMinor = fis.read();
String version = versionMajor + "." + versionMinor; //$NON-NLS-1$
return version;
} finally {
fc.close();
fis.close();
}
} | java | public static String getLasFileVersion( File lasFile ) throws IOException {
FileInputStream fis = null;
FileChannel fc = null;
try {
fis = new FileInputStream(lasFile);
fc = fis.getChannel();
// Version Major
fis.skip(24);
int versionMajor = fis.read();
// Version Minor
int versionMinor = fis.read();
String version = versionMajor + "." + versionMinor; //$NON-NLS-1$
return version;
} finally {
fc.close();
fis.close();
}
} | [
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137,266 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.getLasFeatureBuilder | public static SimpleFeatureBuilder getLasFeatureBuilder( CoordinateReferenceSystem crs ) {
if (lasSimpleFeatureBuilder == null) {
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName("lasdata");
b.setCRS(crs);
b.add(THE_GEOM, Point.class);
b.add(ID, Integer.class);
b.add(ELEVATION, Double.class);
b.add(INTENSITY, Double.class);
b.add(CLASSIFICATION, Integer.class);
b.add(IMPULSE, Double.class);
b.add(NUM_OF_IMPULSES, Double.class);
final SimpleFeatureType featureType = b.buildFeatureType();
lasSimpleFeatureBuilder = new SimpleFeatureBuilder(featureType);
}
return lasSimpleFeatureBuilder;
} | java | public static SimpleFeatureBuilder getLasFeatureBuilder( CoordinateReferenceSystem crs ) {
if (lasSimpleFeatureBuilder == null) {
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName("lasdata");
b.setCRS(crs);
b.add(THE_GEOM, Point.class);
b.add(ID, Integer.class);
b.add(ELEVATION, Double.class);
b.add(INTENSITY, Double.class);
b.add(CLASSIFICATION, Integer.class);
b.add(IMPULSE, Double.class);
b.add(NUM_OF_IMPULSES, Double.class);
final SimpleFeatureType featureType = b.buildFeatureType();
lasSimpleFeatureBuilder = new SimpleFeatureBuilder(featureType);
}
return lasSimpleFeatureBuilder;
} | [
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<li>impulse</li>
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137,267 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.tofeature | public static SimpleFeature tofeature( LasRecord r, Integer featureId, CoordinateReferenceSystem crs ) {
final Point point = toGeometry(r);
double elev = r.z;
if (!Double.isNaN(r.groundElevation)) {
elev = r.groundElevation;
}
if (featureId == null) {
featureId = -1;
}
final Object[] values = new Object[]{point, featureId, elev, r.intensity, r.classification, r.returnNumber,
r.numberOfReturns};
SimpleFeatureBuilder lasFeatureBuilder = getLasFeatureBuilder(crs);
lasFeatureBuilder.addAll(values);
final SimpleFeature feature = lasFeatureBuilder.buildFeature(null);
return feature;
} | java | public static SimpleFeature tofeature( LasRecord r, Integer featureId, CoordinateReferenceSystem crs ) {
final Point point = toGeometry(r);
double elev = r.z;
if (!Double.isNaN(r.groundElevation)) {
elev = r.groundElevation;
}
if (featureId == null) {
featureId = -1;
}
final Object[] values = new Object[]{point, featureId, elev, r.intensity, r.classification, r.returnNumber,
r.numberOfReturns};
SimpleFeatureBuilder lasFeatureBuilder = getLasFeatureBuilder(crs);
lasFeatureBuilder.addAll(values);
final SimpleFeature feature = lasFeatureBuilder.buildFeature(null);
return feature;
} | [
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137,268 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.dumpLasFolderOverview | public static void dumpLasFolderOverview( String folder, CoordinateReferenceSystem crs ) throws Exception {
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName("overview");
b.setCRS(crs);
b.add("the_geom", Polygon.class);
b.add("name", String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
DefaultFeatureCollection newCollection = new DefaultFeatureCollection();
OmsFileIterator iter = new OmsFileIterator();
iter.inFolder = folder;
iter.fileFilter = new FileFilter(){
public boolean accept( File pathname ) {
return pathname.getName().endsWith(".las");
}
};
iter.process();
List<File> filesList = iter.filesList;
for( File file : filesList ) {
try (ALasReader r = new LasReaderBuffered(file, crs)) {
r.open();
ReferencedEnvelope3D envelope = r.getHeader().getDataEnvelope();
Polygon polygon = GeometryUtilities.createPolygonFromEnvelope(envelope);
Object[] objs = new Object[]{polygon, r.getLasFile().getName()};
builder.addAll(objs);
SimpleFeature feature = builder.buildFeature(null);
newCollection.add(feature);
}
}
File folderFile = new File(folder);
File outFile = new File(folder, "overview_" + folderFile.getName() + ".shp");
OmsVectorWriter.writeVector(outFile.getAbsolutePath(), newCollection);
} | java | public static void dumpLasFolderOverview( String folder, CoordinateReferenceSystem crs ) throws Exception {
SimpleFeatureTypeBuilder b = new SimpleFeatureTypeBuilder();
b.setName("overview");
b.setCRS(crs);
b.add("the_geom", Polygon.class);
b.add("name", String.class);
SimpleFeatureType type = b.buildFeatureType();
SimpleFeatureBuilder builder = new SimpleFeatureBuilder(type);
DefaultFeatureCollection newCollection = new DefaultFeatureCollection();
OmsFileIterator iter = new OmsFileIterator();
iter.inFolder = folder;
iter.fileFilter = new FileFilter(){
public boolean accept( File pathname ) {
return pathname.getName().endsWith(".las");
}
};
iter.process();
List<File> filesList = iter.filesList;
for( File file : filesList ) {
try (ALasReader r = new LasReaderBuffered(file, crs)) {
r.open();
ReferencedEnvelope3D envelope = r.getHeader().getDataEnvelope();
Polygon polygon = GeometryUtilities.createPolygonFromEnvelope(envelope);
Object[] objs = new Object[]{polygon, r.getLasFile().getName()};
builder.addAll(objs);
SimpleFeature feature = builder.buildFeature(null);
newCollection.add(feature);
}
}
File folderFile = new File(folder);
File outFile = new File(folder, "overview_" + folderFile.getName() + ".shp");
OmsVectorWriter.writeVector(outFile.getAbsolutePath(), newCollection);
} | [
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... | Dump an overview shapefile for a las folder.
@param folder the folder.
@param crs the crs to use.
@throws Exception | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java#L251-L288 |
137,269 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.distance | public static double distance( LasRecord r1, LasRecord r2 ) {
double distance = NumericsUtilities.pythagoras(r1.x - r2.x, r1.y - r2.y);
return distance;
} | java | public static double distance( LasRecord r1, LasRecord r2 ) {
double distance = NumericsUtilities.pythagoras(r1.x - r2.x, r1.y - r2.y);
return distance;
} | [
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137,270 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.distance3D | public static double distance3D( LasRecord r1, LasRecord r2 ) {
double deltaElev = Math.abs(r1.z - r2.z);
double projectedDistance = NumericsUtilities.pythagoras(r1.x - r2.x, r1.y - r2.y);
double distance = NumericsUtilities.pythagoras(projectedDistance, deltaElev);
return distance;
} | java | public static double distance3D( LasRecord r1, LasRecord r2 ) {
double deltaElev = Math.abs(r1.z - r2.z);
double projectedDistance = NumericsUtilities.pythagoras(r1.x - r2.x, r1.y - r2.y);
double distance = NumericsUtilities.pythagoras(projectedDistance, deltaElev);
return distance;
} | [
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137,271 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.triangulate | public static List<Geometry> triangulate( List<LasRecord> lasPoints, Double elevThres, boolean useGround,
IHMProgressMonitor pm ) {
pm.beginTask("Triangulation...", -1);
List<Coordinate> lasCoordinates = new ArrayList<Coordinate>();
for( LasRecord lasRecord : lasPoints ) {
lasCoordinates.add(new Coordinate(lasRecord.x, lasRecord.y, useGround ? lasRecord.groundElevation : lasRecord.z));
}
DelaunayTriangulationBuilder triangulationBuilder = new DelaunayTriangulationBuilder();
triangulationBuilder.setSites(lasCoordinates);
Geometry triangles = triangulationBuilder.getTriangles(gf);
pm.done();
ArrayList<Geometry> trianglesList = new ArrayList<Geometry>();
int numTriangles = triangles.getNumGeometries();
if (elevThres == null) {
// no true dsm to be calculated
for( int i = 0; i < numTriangles; i++ ) {
Geometry geometryN = triangles.getGeometryN(i);
trianglesList.add(geometryN);
}
} else {
double pElevThres = elevThres;
numTriangles = triangles.getNumGeometries();
pm.beginTask("Extracting triangles based on threshold...", numTriangles);
for( int i = 0; i < numTriangles; i++ ) {
pm.worked(1);
Geometry geometryN = triangles.getGeometryN(i);
Coordinate[] coordinates = geometryN.getCoordinates();
double z0 = coordinates[0].z;
double z1 = coordinates[1].z;
double z2 = coordinates[2].z;
double diff1 = abs(z0 - z1);
if (diff1 > pElevThres) {
continue;
}
double diff2 = abs(z0 - z2);
if (diff2 > pElevThres) {
continue;
}
double diff3 = abs(z1 - z2);
if (diff3 > pElevThres) {
continue;
}
trianglesList.add(geometryN);
}
pm.done();
}
pm.beginTask("Triangulation1...", -1);
List<Coordinate> lasCoordinates2 = new ArrayList<Coordinate>();
for( Geometry g : trianglesList ) {
Coordinate[] c = g.getCoordinates();
lasCoordinates2.add(c[0]);
lasCoordinates2.add(c[1]);
lasCoordinates2.add(c[2]);
}
trianglesList.clear();
DelaunayTriangulationBuilder triangulationBuilder1 = new DelaunayTriangulationBuilder();
triangulationBuilder1.setSites(lasCoordinates2);
Geometry triangles1 = triangulationBuilder1.getTriangles(gf);
pm.done();
numTriangles = triangles1.getNumGeometries();
// no true dsm to be calculated
for( int i = 0; i < numTriangles; i++ ) {
Geometry geometryN = triangles1.getGeometryN(i);
trianglesList.add(geometryN);
}
return trianglesList;
} | java | public static List<Geometry> triangulate( List<LasRecord> lasPoints, Double elevThres, boolean useGround,
IHMProgressMonitor pm ) {
pm.beginTask("Triangulation...", -1);
List<Coordinate> lasCoordinates = new ArrayList<Coordinate>();
for( LasRecord lasRecord : lasPoints ) {
lasCoordinates.add(new Coordinate(lasRecord.x, lasRecord.y, useGround ? lasRecord.groundElevation : lasRecord.z));
}
DelaunayTriangulationBuilder triangulationBuilder = new DelaunayTriangulationBuilder();
triangulationBuilder.setSites(lasCoordinates);
Geometry triangles = triangulationBuilder.getTriangles(gf);
pm.done();
ArrayList<Geometry> trianglesList = new ArrayList<Geometry>();
int numTriangles = triangles.getNumGeometries();
if (elevThres == null) {
// no true dsm to be calculated
for( int i = 0; i < numTriangles; i++ ) {
Geometry geometryN = triangles.getGeometryN(i);
trianglesList.add(geometryN);
}
} else {
double pElevThres = elevThres;
numTriangles = triangles.getNumGeometries();
pm.beginTask("Extracting triangles based on threshold...", numTriangles);
for( int i = 0; i < numTriangles; i++ ) {
pm.worked(1);
Geometry geometryN = triangles.getGeometryN(i);
Coordinate[] coordinates = geometryN.getCoordinates();
double z0 = coordinates[0].z;
double z1 = coordinates[1].z;
double z2 = coordinates[2].z;
double diff1 = abs(z0 - z1);
if (diff1 > pElevThres) {
continue;
}
double diff2 = abs(z0 - z2);
if (diff2 > pElevThres) {
continue;
}
double diff3 = abs(z1 - z2);
if (diff3 > pElevThres) {
continue;
}
trianglesList.add(geometryN);
}
pm.done();
}
pm.beginTask("Triangulation1...", -1);
List<Coordinate> lasCoordinates2 = new ArrayList<Coordinate>();
for( Geometry g : trianglesList ) {
Coordinate[] c = g.getCoordinates();
lasCoordinates2.add(c[0]);
lasCoordinates2.add(c[1]);
lasCoordinates2.add(c[2]);
}
trianglesList.clear();
DelaunayTriangulationBuilder triangulationBuilder1 = new DelaunayTriangulationBuilder();
triangulationBuilder1.setSites(lasCoordinates2);
Geometry triangles1 = triangulationBuilder1.getTriangles(gf);
pm.done();
numTriangles = triangles1.getNumGeometries();
// no true dsm to be calculated
for( int i = 0; i < numTriangles; i++ ) {
Geometry geometryN = triangles1.getGeometryN(i);
trianglesList.add(geometryN);
}
return trianglesList;
} | [
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@param lasPoints the list of points.
@param elevThres the optional threshold for true dsm calculation.
@param useGround use the ground elevation instead of z.
@param pm the monitor.
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137,272 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.smoothIDW | @SuppressWarnings("unchecked")
public static void smoothIDW( List<LasRecord> lasPoints, boolean useGround, double idwBuffer, IHMProgressMonitor pm ) {
List<Coordinate> coordinatesList = new ArrayList<Coordinate>();
if (useGround) {
for( LasRecord dot : lasPoints ) {
Coordinate c = new Coordinate(dot.x, dot.y, dot.groundElevation);
coordinatesList.add(c);
}
} else {
for( LasRecord dot : lasPoints ) {
Coordinate c = new Coordinate(dot.x, dot.y, dot.z);
coordinatesList.add(c);
}
}
// make triangles tree
STRtree pointsTree = new STRtree(coordinatesList.size());
pm.beginTask("Make points tree...", coordinatesList.size());
for( Coordinate coord : coordinatesList ) {
pointsTree.insert(new Envelope(coord), coord);
pm.worked(1);
}
pm.done();
pm.beginTask("Interpolate...", coordinatesList.size());
for( int i = 0; i < coordinatesList.size(); i++ ) {
Coordinate coord = coordinatesList.get(i);
Envelope env = new Envelope(coord);
env.expandBy(idwBuffer);
List<Coordinate> nearPoints = pointsTree.query(env);
double avg = 0;
for( Coordinate coordinate : nearPoints ) {
avg += coordinate.z;
}
avg = avg / nearPoints.size();
LasRecord lasRecord = lasPoints.get(i);
if (useGround) {
lasRecord.groundElevation = avg;
} else {
lasRecord.z = avg;
}
pm.worked(1);
}
pm.done();
} | java | @SuppressWarnings("unchecked")
public static void smoothIDW( List<LasRecord> lasPoints, boolean useGround, double idwBuffer, IHMProgressMonitor pm ) {
List<Coordinate> coordinatesList = new ArrayList<Coordinate>();
if (useGround) {
for( LasRecord dot : lasPoints ) {
Coordinate c = new Coordinate(dot.x, dot.y, dot.groundElevation);
coordinatesList.add(c);
}
} else {
for( LasRecord dot : lasPoints ) {
Coordinate c = new Coordinate(dot.x, dot.y, dot.z);
coordinatesList.add(c);
}
}
// make triangles tree
STRtree pointsTree = new STRtree(coordinatesList.size());
pm.beginTask("Make points tree...", coordinatesList.size());
for( Coordinate coord : coordinatesList ) {
pointsTree.insert(new Envelope(coord), coord);
pm.worked(1);
}
pm.done();
pm.beginTask("Interpolate...", coordinatesList.size());
for( int i = 0; i < coordinatesList.size(); i++ ) {
Coordinate coord = coordinatesList.get(i);
Envelope env = new Envelope(coord);
env.expandBy(idwBuffer);
List<Coordinate> nearPoints = pointsTree.query(env);
double avg = 0;
for( Coordinate coordinate : nearPoints ) {
avg += coordinate.z;
}
avg = avg / nearPoints.size();
LasRecord lasRecord = lasPoints.get(i);
if (useGround) {
lasRecord.groundElevation = avg;
} else {
lasRecord.z = avg;
}
pm.worked(1);
}
pm.done();
} | [
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<p>Note that the values in the original data are changed.
@param lasPoints the list of points to smooth.
@param useGround if <code>true</code>, the ground elev is smoothed instead of the z.
@param idwBuffer the buffer around the points to consider for smoothing.
@param pm the monitor. | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java#L560-L605 |
137,273 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/las/utils/LasUtils.java | LasUtils.getLastVisiblePointData | public static double[] getLastVisiblePointData( LasRecord baseRecord, List<LasRecord> lasRecords, boolean useGround ) {
if (lasRecords.size() < 1) {
throw new IllegalArgumentException("This needs to have at least 1 point.");
}
double baseElev = useGround ? baseRecord.groundElevation : baseRecord.z;
Coordinate baseCoord = new Coordinate(0, 0);
double minAzimuthAngle = Double.POSITIVE_INFINITY;
double maxAzimuthAngle = Double.NEGATIVE_INFINITY;
LasRecord minAzimuthPoint = null;
LasRecord maxAzimuthPoint = null;
for( int i = 0; i < lasRecords.size(); i++ ) {
LasRecord currentPoint = lasRecords.get(i);
double currentElev = useGround ? currentPoint.groundElevation : currentPoint.z;
if (HMConstants.isNovalue(currentElev)) {
continue;
}
currentElev = currentElev - baseElev;
double currentProg = LasUtils.distance(baseRecord, currentPoint);
Coordinate currentCoord = new Coordinate(currentProg, currentElev);
double azimuth = GeometryUtilities.azimuth(baseCoord, currentCoord);
if (azimuth <= minAzimuthAngle) {
minAzimuthAngle = azimuth;
minAzimuthPoint = currentPoint;
}
if (azimuth >= maxAzimuthAngle) {
maxAzimuthAngle = azimuth;
maxAzimuthPoint = currentPoint;
}
}
if (minAzimuthPoint == null || maxAzimuthPoint == null) {
return null;
}
return new double[]{//
/* */useGround ? minAzimuthPoint.groundElevation : minAzimuthPoint.z, //
minAzimuthPoint.x, //
minAzimuthPoint.y, //
LasUtils.distance(baseRecord, minAzimuthPoint), //
minAzimuthAngle, //
useGround ? maxAzimuthPoint.groundElevation : maxAzimuthPoint.z, //
maxAzimuthPoint.x, //
maxAzimuthPoint.y, //
LasUtils.distance(baseRecord, maxAzimuthPoint), //
maxAzimuthAngle, //
};
} | java | public static double[] getLastVisiblePointData( LasRecord baseRecord, List<LasRecord> lasRecords, boolean useGround ) {
if (lasRecords.size() < 1) {
throw new IllegalArgumentException("This needs to have at least 1 point.");
}
double baseElev = useGround ? baseRecord.groundElevation : baseRecord.z;
Coordinate baseCoord = new Coordinate(0, 0);
double minAzimuthAngle = Double.POSITIVE_INFINITY;
double maxAzimuthAngle = Double.NEGATIVE_INFINITY;
LasRecord minAzimuthPoint = null;
LasRecord maxAzimuthPoint = null;
for( int i = 0; i < lasRecords.size(); i++ ) {
LasRecord currentPoint = lasRecords.get(i);
double currentElev = useGround ? currentPoint.groundElevation : currentPoint.z;
if (HMConstants.isNovalue(currentElev)) {
continue;
}
currentElev = currentElev - baseElev;
double currentProg = LasUtils.distance(baseRecord, currentPoint);
Coordinate currentCoord = new Coordinate(currentProg, currentElev);
double azimuth = GeometryUtilities.azimuth(baseCoord, currentCoord);
if (azimuth <= minAzimuthAngle) {
minAzimuthAngle = azimuth;
minAzimuthPoint = currentPoint;
}
if (azimuth >= maxAzimuthAngle) {
maxAzimuthAngle = azimuth;
maxAzimuthPoint = currentPoint;
}
}
if (minAzimuthPoint == null || maxAzimuthPoint == null) {
return null;
}
return new double[]{//
/* */useGround ? minAzimuthPoint.groundElevation : minAzimuthPoint.z, //
minAzimuthPoint.x, //
minAzimuthPoint.y, //
LasUtils.distance(baseRecord, minAzimuthPoint), //
minAzimuthAngle, //
useGround ? maxAzimuthPoint.groundElevation : maxAzimuthPoint.z, //
maxAzimuthPoint.x, //
maxAzimuthPoint.y, //
LasUtils.distance(baseRecord, maxAzimuthPoint), //
maxAzimuthAngle, //
};
} | [
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... | Return last visible point data for a las records points list from a given position.
<p>For the profile the min and max angles of "sight" are
calculated. The min azimuth angle represents the "upper"
line of sight, as thought from the zenith.
<p>The max azimuth angle represents the "below the earth" line
of sight (think of a viewer looking in direction nadir).
<p>The return values are in an array of doubles containing:
<ul>
<li>[0] min point elev, </li>
<li>[1] min point x, </li>
<li>[2] min point y, </li>
<li>[3] min point progressive, </li>
<li>[4] min point azimuth, </li>
<li>[5] max point elev, </li>
<li>[6] max point x, </li>
<li>[7] max point y, </li>
<li>[8] max point progressive, </li>
<li>[9] max point azimuth </li>
</ul>
@param baseRecord the record to use as center point.
@param lasRecords the {@link LasRecord} points sorted by nearest from the center dot.
@param useGround if <code>true</code>, use the ground info instead of z elevation.
@return the last visible point parameters. | [
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137,274 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/ValidationMessageManager.java | ValidationMessageManager.getString | public static String getString(String key, Object... params) {
String message = getStringSafely(key);
if (params != null && params.length > 0) {
return MessageFormat.format(message, params);
} else {
return message;
}
} | java | public static String getString(String key, Object... params) {
String message = getStringSafely(key);
if (params != null && params.length > 0) {
return MessageFormat.format(message, params);
} else {
return message;
}
} | [
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@param key property key
@param params message parameters to be used in message's place holders
@return Resource value or place-holder error String | [
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137,275 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/ValidationMessageManager.java | ValidationMessageManager.getStringSafely | private static String getStringSafely(String key) {
String resource = null;
for (ResourceBundle bundle: bundles) {
try {
resource = bundle.getString(key);
} catch (MissingResourceException mrex) {
continue;
}
return resource;
}
return NO_MESSAGE + key;
} | java | private static String getStringSafely(String key) {
String resource = null;
for (ResourceBundle bundle: bundles) {
try {
resource = bundle.getString(key);
} catch (MissingResourceException mrex) {
continue;
}
return resource;
}
return NO_MESSAGE + key;
} | [
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137,276 | enasequence/sequencetools | src/main/java/uk/ac/ebi/embl/api/validation/plan/ValidationPlan.java | ValidationPlan.execute | @SuppressWarnings("unchecked")
public ValidationPlanResult execute(ValidationCheck check, Object target) throws ValidationEngineException {
if (check == null)
{
return validationPlanResult;
}
try
{
check.setEmblEntryValidationPlanProperty(planProperty);
if(planProperty.enproConnection.get()!=null&&entryDAOUtils==null)
{
entryDAOUtils=new EntryDAOUtilsImpl(planProperty.enproConnection.get(),true);
}
check.setEntryDAOUtils(entryDAOUtils);
if(planProperty.eraproConnection.get()!=null&&eraproDAOUtils==null)
{
eraproDAOUtils = new EraproDAOUtilsImpl(planProperty.eraproConnection.get());
}
check.setEraproDAOUtils(eraproDAOUtils);
}catch(Exception e)
{
throw new ValidationEngineException(e);
}
//long start= System.currentTimeMillis();
Class<? extends ValidationCheck> checkClass = check.getClass();
ExcludeScope excludeScopeAnnotation = checkClass.getAnnotation(ExcludeScope.class);
RemoteExclude remoteExclude = checkClass.getAnnotation(RemoteExclude.class);
Description descAnnotation = checkClass.getAnnotation(Description.class);
GroupIncludeScope groupIncludeAnnotation = checkClass.getAnnotation(GroupIncludeScope.class);
if(remoteExclude!=null&&remote)
{
return validationPlanResult;
}
if (excludeScopeAnnotation != null && isInValidationScope(excludeScopeAnnotation.validationScope())) {
return validationPlanResult;
}
if(groupIncludeAnnotation!=null && !isInValidationScopeGroup(groupIncludeAnnotation.group()))
{
return validationPlanResult;
}
// inject data sets
/*if(null != checkDataSetAnnotation) {
Stream.of(checkDataSetAnnotation.dataSetNames()).forEach( dsName -> GlobalDataSets.loadIfNotExist(dsName, dataManager, fileManager, devMode));
}
*/
validationPlanResult.append(check.check(target));
if (excludeScopeAnnotation != null) {
demoteSeverity(validationPlanResult, excludeScopeAnnotation.maxSeverity());
}
if(groupIncludeAnnotation!=null)
{
demoteSeverity(validationPlanResult, groupIncludeAnnotation.maxSeverity());
}
// System.out.println(this.result.count());
return validationPlanResult;
} | java | @SuppressWarnings("unchecked")
public ValidationPlanResult execute(ValidationCheck check, Object target) throws ValidationEngineException {
if (check == null)
{
return validationPlanResult;
}
try
{
check.setEmblEntryValidationPlanProperty(planProperty);
if(planProperty.enproConnection.get()!=null&&entryDAOUtils==null)
{
entryDAOUtils=new EntryDAOUtilsImpl(planProperty.enproConnection.get(),true);
}
check.setEntryDAOUtils(entryDAOUtils);
if(planProperty.eraproConnection.get()!=null&&eraproDAOUtils==null)
{
eraproDAOUtils = new EraproDAOUtilsImpl(planProperty.eraproConnection.get());
}
check.setEraproDAOUtils(eraproDAOUtils);
}catch(Exception e)
{
throw new ValidationEngineException(e);
}
//long start= System.currentTimeMillis();
Class<? extends ValidationCheck> checkClass = check.getClass();
ExcludeScope excludeScopeAnnotation = checkClass.getAnnotation(ExcludeScope.class);
RemoteExclude remoteExclude = checkClass.getAnnotation(RemoteExclude.class);
Description descAnnotation = checkClass.getAnnotation(Description.class);
GroupIncludeScope groupIncludeAnnotation = checkClass.getAnnotation(GroupIncludeScope.class);
if(remoteExclude!=null&&remote)
{
return validationPlanResult;
}
if (excludeScopeAnnotation != null && isInValidationScope(excludeScopeAnnotation.validationScope())) {
return validationPlanResult;
}
if(groupIncludeAnnotation!=null && !isInValidationScopeGroup(groupIncludeAnnotation.group()))
{
return validationPlanResult;
}
// inject data sets
/*if(null != checkDataSetAnnotation) {
Stream.of(checkDataSetAnnotation.dataSetNames()).forEach( dsName -> GlobalDataSets.loadIfNotExist(dsName, dataManager, fileManager, devMode));
}
*/
validationPlanResult.append(check.check(target));
if (excludeScopeAnnotation != null) {
demoteSeverity(validationPlanResult, excludeScopeAnnotation.maxSeverity());
}
if(groupIncludeAnnotation!=null)
{
demoteSeverity(validationPlanResult, groupIncludeAnnotation.maxSeverity());
}
// System.out.println(this.result.count());
return validationPlanResult;
} | [
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] | 4127f5e1a17540239f5810136153fbd6737fa262 | https://github.com/enasequence/sequencetools/blob/4127f5e1a17540239f5810136153fbd6737fa262/src/main/java/uk/ac/ebi/embl/api/validation/plan/ValidationPlan.java#L106-L171 |
137,277 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/vectorwriter/OmsVectorWriter.java | OmsVectorWriter.writeVector | public static void writeVector( String path, SimpleFeatureCollection featureCollection ) throws IOException {
OmsVectorWriter writer = new OmsVectorWriter();
writer.file = path;
writer.inVector = featureCollection;
writer.process();
} | java | public static void writeVector( String path, SimpleFeatureCollection featureCollection ) throws IOException {
OmsVectorWriter writer = new OmsVectorWriter();
writer.file = path;
writer.inVector = featureCollection;
writer.process();
} | [
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@param path the vector file path.
@param featureCollection the {@link FeatureCollection} to write.
@throws IOException | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/vectorwriter/OmsVectorWriter.java#L102-L107 |
137,278 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/forms/Utilities.java | Utilities.getFormItems | public static JSONArray getFormItems( JSONObject formObj ) throws JSONException {
if (formObj.has(TAG_FORMITEMS)) {
JSONArray formItemsArray = formObj.getJSONArray(TAG_FORMITEMS);
return formItemsArray;
}
return null;
} | java | public static JSONArray getFormItems( JSONObject formObj ) throws JSONException {
if (formObj.has(TAG_FORMITEMS)) {
JSONArray formItemsArray = formObj.getJSONArray(TAG_FORMITEMS);
return formItemsArray;
}
return null;
} | [
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<p>Note that the entering json object has to be one
object of the main array, not THE main array itself,
i.e. a choice was already done.
@param jsonObj the single object.
@return the array of items of the contained form or <code>null</code> if
no form is contained.
@throws JSONException | [
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137,279 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/forms/Utilities.java | Utilities.getImageIds | public static List<String> getImageIds( String formString ) throws Exception {
List<String> imageIds = new ArrayList<String>();
if (formString != null && formString.length() > 0) {
JSONObject sectionObject = new JSONObject(formString);
List<String> formsNames = Utilities.getFormNames4Section(sectionObject);
for( String formName : formsNames ) {
JSONObject form4Name = Utilities.getForm4Name(formName, sectionObject);
JSONArray formItems = Utilities.getFormItems(form4Name);
for( int i = 0; i < formItems.length(); i++ ) {
JSONObject formItem = formItems.getJSONObject(i);
if (!formItem.has(Utilities.TAG_KEY)) {
continue;
}
String type = formItem.getString(Utilities.TAG_TYPE);
String value = "";
if (formItem.has(Utilities.TAG_VALUE))
value = formItem.getString(Utilities.TAG_VALUE);
if (type.equals(Utilities.TYPE_PICTURES)) {
if (value.trim().length() == 0) {
continue;
}
String[] imageSplit = value.split(";");
Collections.addAll(imageIds, imageSplit);
} else if (type.equals(Utilities.TYPE_MAP)) {
if (value.trim().length() == 0) {
continue;
}
String image = value.trim();
imageIds.add(image);
} else if (type.equals(Utilities.TYPE_SKETCH)) {
if (value.trim().length() == 0) {
continue;
}
String[] imageSplit = value.split(";");
Collections.addAll(imageIds, imageSplit);
}
}
}
}
return imageIds;
} | java | public static List<String> getImageIds( String formString ) throws Exception {
List<String> imageIds = new ArrayList<String>();
if (formString != null && formString.length() > 0) {
JSONObject sectionObject = new JSONObject(formString);
List<String> formsNames = Utilities.getFormNames4Section(sectionObject);
for( String formName : formsNames ) {
JSONObject form4Name = Utilities.getForm4Name(formName, sectionObject);
JSONArray formItems = Utilities.getFormItems(form4Name);
for( int i = 0; i < formItems.length(); i++ ) {
JSONObject formItem = formItems.getJSONObject(i);
if (!formItem.has(Utilities.TAG_KEY)) {
continue;
}
String type = formItem.getString(Utilities.TAG_TYPE);
String value = "";
if (formItem.has(Utilities.TAG_VALUE))
value = formItem.getString(Utilities.TAG_VALUE);
if (type.equals(Utilities.TYPE_PICTURES)) {
if (value.trim().length() == 0) {
continue;
}
String[] imageSplit = value.split(";");
Collections.addAll(imageIds, imageSplit);
} else if (type.equals(Utilities.TYPE_MAP)) {
if (value.trim().length() == 0) {
continue;
}
String image = value.trim();
imageIds.add(image);
} else if (type.equals(Utilities.TYPE_SKETCH)) {
if (value.trim().length() == 0) {
continue;
}
String[] imageSplit = value.split(";");
Collections.addAll(imageIds, imageSplit);
}
}
}
}
return imageIds;
} | [
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@param formString the form.
@return the list of images paths.
@throws Exception if something goes wrong. | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/forms/Utilities.java#L283-L325 |
137,280 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/forms/Utilities.java | Utilities.formsRootFromSectionsMap | public static JSONArray formsRootFromSectionsMap( HashMap<String, JSONObject> sectionsMap ) {
JSONArray rootArray = new JSONArray();
Collection<JSONObject> objects = sectionsMap.values();
for( JSONObject jsonObject : objects ) {
rootArray.put(jsonObject);
}
return rootArray;
} | java | public static JSONArray formsRootFromSectionsMap( HashMap<String, JSONObject> sectionsMap ) {
JSONArray rootArray = new JSONArray();
Collection<JSONObject> objects = sectionsMap.values();
for( JSONObject jsonObject : objects ) {
rootArray.put(jsonObject);
}
return rootArray;
} | [
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@param sectionsMap the json sections map.
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137,281 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/compat/ADatabaseSyntaxHelper.java | ADatabaseSyntaxHelper.ofCompat | public String ofCompat( String compatibilityDataTypeName ) {
switch( compatibilityDataTypeName ) {
case COMPAT_TEXT:
return TEXT();
case COMPAT_INT:
return INTEGER();
case COMPAT_LONG:
return LONG();
case COMPAT_REAL:
return REAL();
case COMPAT_BLOB:
return BLOB();
case COMPAT_CLOB:
return CLOB();
}
throw new RuntimeException("No type for name: " + compatibilityDataTypeName);
} | java | public String ofCompat( String compatibilityDataTypeName ) {
switch( compatibilityDataTypeName ) {
case COMPAT_TEXT:
return TEXT();
case COMPAT_INT:
return INTEGER();
case COMPAT_LONG:
return LONG();
case COMPAT_REAL:
return REAL();
case COMPAT_BLOB:
return BLOB();
case COMPAT_CLOB:
return CLOB();
}
throw new RuntimeException("No type for name: " + compatibilityDataTypeName);
} | [
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137,282 | TheHortonMachine/hortonmachine | dbs/src/main/java/org/hortonmachine/dbs/compat/ADatabaseSyntaxHelper.java | ADatabaseSyntaxHelper.ofDbType | public String ofDbType( String dbSpecificType ) {
if (dbSpecificType.equals(TEXT())) {
return COMPAT_TEXT;
} else if (dbSpecificType.equals(INTEGER())) {
return COMPAT_INT;
} else if (dbSpecificType.equals(LONG())) {
return COMPAT_LONG;
} else if (dbSpecificType.equals(REAL())) {
return COMPAT_REAL;
} else if (dbSpecificType.equals(BLOB())) {
return COMPAT_BLOB;
} else if (dbSpecificType.equals(CLOB())) {
return COMPAT_CLOB;
}
throw new RuntimeException("No type for name: " + dbSpecificType);
} | java | public String ofDbType( String dbSpecificType ) {
if (dbSpecificType.equals(TEXT())) {
return COMPAT_TEXT;
} else if (dbSpecificType.equals(INTEGER())) {
return COMPAT_INT;
} else if (dbSpecificType.equals(LONG())) {
return COMPAT_LONG;
} else if (dbSpecificType.equals(REAL())) {
return COMPAT_REAL;
} else if (dbSpecificType.equals(BLOB())) {
return COMPAT_BLOB;
} else if (dbSpecificType.equals(CLOB())) {
return COMPAT_CLOB;
}
throw new RuntimeException("No type for name: " + dbSpecificType);
} | [
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137,283 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/modules/r/morpher/Thin.java | Thin.thinBinaryRep | private BinaryFast thinBinaryRep( BinaryFast b, int[] kernel ) {
Point p;
HashSet<Point> inputHashSet = new HashSet<Point>();
int[][] pixels = b.getPixels();
if (kernelNo0s(kernel)) {
for( int j = 0; j < b.getHeight(); ++j ) {
for( int i = 0; i < b.getWidth(); ++i ) {
if (pixels[i][j] == BinaryFast.FOREGROUND) {
inputHashSet.add(new Point(i, j));
}
}
}
} else {
Iterator<Point> it = b.getForegroundEdgePixels().iterator();
while( it.hasNext() ) {
inputHashSet.add(it.next());
}
}
HashSet<Point> result = hitMissHashSet(b, inputHashSet, kernel);
Iterator<Point> it = result.iterator();
while( it.hasNext() ) {
p = new Point(it.next());
// make p a background pixel and update the edge sets
b.removePixel(p);
b.getForegroundEdgePixels().remove(p);
b.getBackgroundEdgePixels().add(p);
// check if new foreground pixels are exposed as edges
for( int j = -1; j < 2; ++j ) {
for( int k = -1; k < 2; ++k ) {
if (p.x + j >= 0 && p.y + k > 0 && p.x + j < b.getWidth() && p.y + k < b.getHeight()
&& pixels[p.x + j][p.y + k] == BinaryFast.FOREGROUND) {
Point p2 = new Point(p.x + j, p.y + k);
b.getForegroundEdgePixels().add(p2);
}
}
}
}
return b;
} | java | private BinaryFast thinBinaryRep( BinaryFast b, int[] kernel ) {
Point p;
HashSet<Point> inputHashSet = new HashSet<Point>();
int[][] pixels = b.getPixels();
if (kernelNo0s(kernel)) {
for( int j = 0; j < b.getHeight(); ++j ) {
for( int i = 0; i < b.getWidth(); ++i ) {
if (pixels[i][j] == BinaryFast.FOREGROUND) {
inputHashSet.add(new Point(i, j));
}
}
}
} else {
Iterator<Point> it = b.getForegroundEdgePixels().iterator();
while( it.hasNext() ) {
inputHashSet.add(it.next());
}
}
HashSet<Point> result = hitMissHashSet(b, inputHashSet, kernel);
Iterator<Point> it = result.iterator();
while( it.hasNext() ) {
p = new Point(it.next());
// make p a background pixel and update the edge sets
b.removePixel(p);
b.getForegroundEdgePixels().remove(p);
b.getBackgroundEdgePixels().add(p);
// check if new foreground pixels are exposed as edges
for( int j = -1; j < 2; ++j ) {
for( int k = -1; k < 2; ++k ) {
if (p.x + j >= 0 && p.y + k > 0 && p.x + j < b.getWidth() && p.y + k < b.getHeight()
&& pixels[p.x + j][p.y + k] == BinaryFast.FOREGROUND) {
Point p2 = new Point(p.x + j, p.y + k);
b.getForegroundEdgePixels().add(p2);
}
}
}
}
return b;
} | [
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@param b the BinaryFast input image
@param kernel the thinning kernel
@return the thinned BinaryFast image | [
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137,284 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/modules/r/morpher/Thin.java | Thin.processSkeleton | public void processSkeleton( BinaryFast binary, int[][] kernel ) {
int oldForeEdge = 0;
int oldBackEdge = 0;
while( !(binary.getForegroundEdgePixels().size() == oldForeEdge && binary.getBackgroundEdgePixels().size() == oldBackEdge) ) {
oldForeEdge = binary.getForegroundEdgePixels().size();
oldBackEdge = binary.getBackgroundEdgePixels().size();
for( int i = 0; i < kernel.length; ++i ) {
binary = thinBinaryRep(binary, kernel[i]);
binary.generateBackgroundEdgeFromForegroundEdge();
}
}
} | java | public void processSkeleton( BinaryFast binary, int[][] kernel ) {
int oldForeEdge = 0;
int oldBackEdge = 0;
while( !(binary.getForegroundEdgePixels().size() == oldForeEdge && binary.getBackgroundEdgePixels().size() == oldBackEdge) ) {
oldForeEdge = binary.getForegroundEdgePixels().size();
oldBackEdge = binary.getBackgroundEdgePixels().size();
for( int i = 0; i < kernel.length; ++i ) {
binary = thinBinaryRep(binary, kernel[i]);
binary.generateBackgroundEdgeFromForegroundEdge();
}
}
} | [
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137,285 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/modules/r/morpher/Thin.java | Thin.kernelMatch | private boolean kernelMatch( Point p, int[][] pixels, int w, int h, int[] kernel ) {
int matched = 0;
for( int j = -1; j < 2; ++j ) {
for( int i = -1; i < 2; ++i ) {
if (kernel[((j + 1) * 3) + (i + 1)] == 2) {
++matched;
} else if ((p.x + i >= 0)
&& (p.x + i < w)
&& (p.y + j >= 0)
&& (p.y + j < h)
&& (((pixels[p.x + i][p.y + j] == BinaryFast.FOREGROUND) && (kernel[((j + 1) * 3) + (i + 1)] == 1)) || ((pixels[p.x
+ i][p.y + j] == BinaryFast.BACKGROUND) && (kernel[((j + 1) * 3) + (i + 1)] == 0)))) {
++matched;
}
}
}
if (matched == 9) {
return true;
} else
return false;
} | java | private boolean kernelMatch( Point p, int[][] pixels, int w, int h, int[] kernel ) {
int matched = 0;
for( int j = -1; j < 2; ++j ) {
for( int i = -1; i < 2; ++i ) {
if (kernel[((j + 1) * 3) + (i + 1)] == 2) {
++matched;
} else if ((p.x + i >= 0)
&& (p.x + i < w)
&& (p.y + j >= 0)
&& (p.y + j < h)
&& (((pixels[p.x + i][p.y + j] == BinaryFast.FOREGROUND) && (kernel[((j + 1) * 3) + (i + 1)] == 1)) || ((pixels[p.x
+ i][p.y + j] == BinaryFast.BACKGROUND) && (kernel[((j + 1) * 3) + (i + 1)] == 0)))) {
++matched;
}
}
}
if (matched == 9) {
return true;
} else
return false;
} | [
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137,286 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/modules/r/morpher/Thin.java | Thin.hitMissHashSet | private HashSet<Point> hitMissHashSet( BinaryFast b, HashSet<Point> input, int[] kernel ) {
HashSet<Point> output = new HashSet<Point>();
Iterator<Point> it = input.iterator();
while( it.hasNext() ) {
Point p = it.next();
if (kernelMatch(p, b.getPixels(), b.getWidth(), b.getHeight(), kernel)) {
// System.out.println("Match "+p.x+" "+p.y);
output.add(p);
}
}
// System.out.println(output.size());
return output;
} | java | private HashSet<Point> hitMissHashSet( BinaryFast b, HashSet<Point> input, int[] kernel ) {
HashSet<Point> output = new HashSet<Point>();
Iterator<Point> it = input.iterator();
while( it.hasNext() ) {
Point p = it.next();
if (kernelMatch(p, b.getPixels(), b.getWidth(), b.getHeight(), kernel)) {
// System.out.println("Match "+p.x+" "+p.y);
output.add(p);
}
}
// System.out.println(output.size());
return output;
} | [
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137,287 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/modules/r/morpher/Thin.java | Thin.kernelNo0s | private boolean kernelNo0s( int[] kernel ) {
for( int i = 0; i < kernel.length; ++i ) {
if (kernel[i] == 0)
return false;
}
return true;
} | java | private boolean kernelNo0s( int[] kernel ) {
for( int i = 0; i < kernel.length; ++i ) {
if (kernel[i] == 0)
return false;
}
return true;
} | [
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137,288 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/styles/Style.java | Style.dashFromString | public static float[] dashFromString( String dashPattern ) {
if (dashPattern.trim().length() > 0) {
String[] split = dashPattern.split(",");
if (split.length > 1) {
float[] dash = new float[split.length];
for( int i = 0; i < split.length; i++ ) {
try {
float tmpDash = Float.parseFloat(split[i].trim());
dash[i] = tmpDash;
} catch (NumberFormatException e) {
// GPLog.error("Style", "Can't convert to dash pattern: " + dashPattern, e);
return null;
}
}
return dash;
}
}
return null;
} | java | public static float[] dashFromString( String dashPattern ) {
if (dashPattern.trim().length() > 0) {
String[] split = dashPattern.split(",");
if (split.length > 1) {
float[] dash = new float[split.length];
for( int i = 0; i < split.length; i++ ) {
try {
float tmpDash = Float.parseFloat(split[i].trim());
dash[i] = tmpDash;
} catch (NumberFormatException e) {
// GPLog.error("Style", "Can't convert to dash pattern: " + dashPattern, e);
return null;
}
}
return dash;
}
}
return null;
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/styles/Style.java#L179-L197 |
137,289 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/io/geopaparazzi/styles/Style.java | Style.dashToString | public static String dashToString( float[] dash, Float shift ) {
StringBuilder sb = new StringBuilder();
if (shift != null)
sb.append(shift);
for( int i = 0; i < dash.length; i++ ) {
if (shift != null || i > 0) {
sb.append(",");
}
sb.append((int) dash[i]);
}
return sb.toString();
} | java | public static String dashToString( float[] dash, Float shift ) {
StringBuilder sb = new StringBuilder();
if (shift != null)
sb.append(shift);
for( int i = 0; i < dash.length; i++ ) {
if (shift != null || i > 0) {
sb.append(",");
}
sb.append((int) dash[i]);
}
return sb.toString();
} | [
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137,290 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmClusters.java | GvmClusters.clear | public void clear() {
Arrays.fill(clusters, 0, bound, null);
pairs.clear();
additions = 0;
count = 0;
bound = 0;
} | java | public void clear() {
Arrays.fill(clusters, 0, bound, null);
pairs.clear();
additions = 0;
count = 0;
bound = 0;
} | [
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137,291 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmClusters.java | GvmClusters.add | public void add(double m, Object pt, K key) {
if (m == 0.0) return; //nothing to do
if (count < capacity) { //shortcut
//TODO should prefer add if var comes to zero
GvmCluster<S,K> cluster = new GvmCluster<S,K>(this);
clusters[additions] = cluster;
cluster.set(m, pt);
addPairs();
cluster.key = keyer.addKey(cluster, key);
count++;
bound = count;
} else {
//identify cheapest merge
GvmClusterPair<S,K> mergePair = pairs.peek();
double mergeT = mergePair == null ? Double.MAX_VALUE : mergePair.value;
//find cheapest addition
GvmCluster<S,K> additionC = null;
double additionT = Double.MAX_VALUE;
for (int i = 0; i < clusters.length; i++) {
GvmCluster<S,K> cluster = clusters[i];
double t = cluster.test(m, pt);
if (t < additionT) {
additionC = cluster;
additionT = t;
}
}
if (additionT <= mergeT) {
//chose addition
additionC.add(m, pt);
updatePairs(additionC);
additionC.key = keyer.addKey(additionC, key);
} else {
//choose merge
GvmCluster<S,K> c1 = mergePair.c1;
GvmCluster<S,K> c2 = mergePair.c2;
if (c1.m0 < c2.m0) {
c1 = c2;
c2 = mergePair.c1;
}
c1.key = keyer.mergeKeys(c1, c2);
c1.add(c2);
updatePairs(c1);
c2.set(m, pt);
updatePairs(c2);
//TODO should this pass through a method on keyer?
c2.key = null;
c2.key = keyer.addKey(c2, key);
}
}
additions++;
} | java | public void add(double m, Object pt, K key) {
if (m == 0.0) return; //nothing to do
if (count < capacity) { //shortcut
//TODO should prefer add if var comes to zero
GvmCluster<S,K> cluster = new GvmCluster<S,K>(this);
clusters[additions] = cluster;
cluster.set(m, pt);
addPairs();
cluster.key = keyer.addKey(cluster, key);
count++;
bound = count;
} else {
//identify cheapest merge
GvmClusterPair<S,K> mergePair = pairs.peek();
double mergeT = mergePair == null ? Double.MAX_VALUE : mergePair.value;
//find cheapest addition
GvmCluster<S,K> additionC = null;
double additionT = Double.MAX_VALUE;
for (int i = 0; i < clusters.length; i++) {
GvmCluster<S,K> cluster = clusters[i];
double t = cluster.test(m, pt);
if (t < additionT) {
additionC = cluster;
additionT = t;
}
}
if (additionT <= mergeT) {
//chose addition
additionC.add(m, pt);
updatePairs(additionC);
additionC.key = keyer.addKey(additionC, key);
} else {
//choose merge
GvmCluster<S,K> c1 = mergePair.c1;
GvmCluster<S,K> c2 = mergePair.c2;
if (c1.m0 < c2.m0) {
c1 = c2;
c2 = mergePair.c1;
}
c1.key = keyer.mergeKeys(c1, c2);
c1.add(c2);
updatePairs(c1);
c2.set(m, pt);
updatePairs(c2);
//TODO should this pass through a method on keyer?
c2.key = null;
c2.key = keyer.addKey(c2, key);
}
}
additions++;
} | [
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137,292 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmClusters.java | GvmClusters.addPairs | private void addPairs() {
GvmCluster<S,K> cj = clusters[count];
int c = count - 1; //index at which new pairs registered for existing clusters
for (int i = 0; i < count; i++) {
GvmCluster<S,K> ci = clusters[i];
GvmClusterPair<S,K> pair = new GvmClusterPair<S,K>(ci, cj);
ci.pairs[c] = pair;
cj.pairs[i] = pair;
pairs.add(pair);
}
} | java | private void addPairs() {
GvmCluster<S,K> cj = clusters[count];
int c = count - 1; //index at which new pairs registered for existing clusters
for (int i = 0; i < count; i++) {
GvmCluster<S,K> ci = clusters[i];
GvmClusterPair<S,K> pair = new GvmClusterPair<S,K>(ci, cj);
ci.pairs[c] = pair;
cj.pairs[i] = pair;
pairs.add(pair);
}
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137,293 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmClusters.java | GvmClusters.updatePairs | private void updatePairs(GvmCluster<S,K> cluster) {
GvmClusterPair<S,K>[] pairs = cluster.pairs;
//accelerated path
if (count == bound) {
int limit = count - 1;
for (int i = 0; i < limit; i++) {
this.pairs.reprioritize(pairs[i]);
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GvmClusterPair<S,K> pair = pairs[i];
if (pair.c1.removed || pair.c2.removed) continue;
this.pairs.reprioritize(pair);
}
}
} | java | private void updatePairs(GvmCluster<S,K> cluster) {
GvmClusterPair<S,K>[] pairs = cluster.pairs;
//accelerated path
if (count == bound) {
int limit = count - 1;
for (int i = 0; i < limit; i++) {
this.pairs.reprioritize(pairs[i]);
}
} else {
int limit = bound - 1;
for (int i = 0; i < limit; i++) {
GvmClusterPair<S,K> pair = pairs[i];
if (pair.c1.removed || pair.c2.removed) continue;
this.pairs.reprioritize(pair);
}
}
} | [
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137,294 | TheHortonMachine/hortonmachine | gears/src/main/java/org/hortonmachine/gears/utils/clustering/GvmClusters.java | GvmClusters.removePairs | private void removePairs(GvmCluster<S,K> cluster) {
GvmClusterPair<S,K>[] pairs = cluster.pairs;
for (int i = 0; i < bound-1; i++) {
GvmClusterPair<S,K> pair = pairs[i];
if (pair.c1.removed || pair.c2.removed) continue;
this.pairs.remove(pair);
}
} | java | private void removePairs(GvmCluster<S,K> cluster) {
GvmClusterPair<S,K>[] pairs = cluster.pairs;
for (int i = 0; i < bound-1; i++) {
GvmClusterPair<S,K> pair = pairs[i];
if (pair.c1.removed || pair.c2.removed) continue;
this.pairs.remove(pair);
}
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137,295 | TheHortonMachine/hortonmachine | dbs/src/main/java/jsqlite/Database.java | Database.open | public void open( String filename, int mode ) throws jsqlite.Exception {
this.filename = filename;
if ((mode & 0200) != 0) {
mode = jsqlite.Constants.SQLITE_OPEN_READWRITE | jsqlite.Constants.SQLITE_OPEN_CREATE;
} else if ((mode & 0400) != 0) {
mode = jsqlite.Constants.SQLITE_OPEN_READONLY;
}
synchronized (this) {
try {
_open4(filename, mode, null, false);
} catch (Exception | OutOfMemoryError se) {
throw se;
} catch (Throwable t) {
_open(filename, mode);
}
}
} | java | public void open( String filename, int mode ) throws jsqlite.Exception {
this.filename = filename;
if ((mode & 0200) != 0) {
mode = jsqlite.Constants.SQLITE_OPEN_READWRITE | jsqlite.Constants.SQLITE_OPEN_CREATE;
} else if ((mode & 0400) != 0) {
mode = jsqlite.Constants.SQLITE_OPEN_READONLY;
}
synchronized (this) {
try {
_open4(filename, mode, null, false);
} catch (Exception | OutOfMemoryError se) {
throw se;
} catch (Throwable t) {
_open(filename, mode);
}
}
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/jsqlite/Database.java#L35-L51 |
137,296 | TheHortonMachine/hortonmachine | dbs/src/main/java/jsqlite/Database.java | Database.create_function | public void create_function( String name, int nargs, Function f ) {
synchronized (this) {
_create_function(name, nargs, f);
}
} | java | public void create_function( String name, int nargs, Function f ) {
synchronized (this) {
_create_function(name, nargs, f);
}
} | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/jsqlite/Database.java#L453-L457 |
137,297 | TheHortonMachine/hortonmachine | dbs/src/main/java/jsqlite/Database.java | Database.create_aggregate | public void create_aggregate( String name, int nargs, Function f ) {
synchronized (this) {
_create_aggregate(name, nargs, f);
}
} | java | public void create_aggregate( String name, int nargs, Function f ) {
synchronized (this) {
_create_aggregate(name, nargs, f);
}
} | [
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] | Create aggregate function.
@param name the name of the new function
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@param f interface of function | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/jsqlite/Database.java#L469-L473 |
137,298 | TheHortonMachine/hortonmachine | dbs/src/main/java/jsqlite/Database.java | Database.backup | public Backup backup( Database dest, String destName, String srcName ) throws jsqlite.Exception {
synchronized (this) {
Backup b = new Backup();
_backup(b, dest, destName, this, srcName);
return b;
}
} | java | public Backup backup( Database dest, String destName, String srcName ) throws jsqlite.Exception {
synchronized (this) {
Backup b = new Backup();
_backup(b, dest, destName, this, srcName);
return b;
}
} | [
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@param dest destination database
@param destName schema of destination database to be backed up
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@return Backup object to perform the backup operation | [
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] | d2b436bbdf951dc1fda56096a42dbc0eae4d35a5 | https://github.com/TheHortonMachine/hortonmachine/blob/d2b436bbdf951dc1fda56096a42dbc0eae4d35a5/dbs/src/main/java/jsqlite/Database.java#L591-L597 |
137,299 | TheHortonMachine/hortonmachine | dbs/src/main/java/jsqlite/Database.java | Database.compile | public Vm compile( String sql ) throws jsqlite.Exception {
synchronized (this) {
Vm vm = new Vm();
vm_compile(sql, vm);
return vm;
}
} | java | public Vm compile( String sql ) throws jsqlite.Exception {
synchronized (this) {
Vm vm = new Vm();
vm_compile(sql, vm);
return vm;
}
} | [
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@param sql SQL statement to be compiled
@return a Vm object | [
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