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from captcha.conf import settings from captcha.helpers import captcha_image_url, captcha_audio_url from captcha.models import CaptchaStore from django.http import HttpResponse, Http404 from django.core.exceptions import ImproperlyConfigured from ranged_response import RangedFileResponse import random import tempfile im...
import os from flask import Flask from flask import render_template from flask import url_for from flask import request from twilio import twiml from twilio.util import TwilioCapability # Declare and configure application app = Flask(__name__, static_url_path='/static') app.config.from_pyfile('local_settings.py') ...
from portality import models batch_size = 1000 total=0 batch = [] suggestion_iterator = models.Suggestion.iterall(page_size=10000) for s in suggestion_iterator: update_deposit_policies = { 'Héloïse': 'Héloïse', 'Diadorum': 'Diadorim' } changed = False for old, new in update_deposit_p...
""" Introduce some basic refactoring functions to |jedi|. This module is still in a very early development stage and needs much testing and improvement. .. warning:: I won't do too much here, but if anyone wants to step in, please do. Refactoring is none of my priorities It uses the |jedi| `API <plugin-a...
# -*- coding: utf-8 -*- """ Permette di spostarsi tra le coordinate della stessa area o in aree differenti da quella in cui si trova l'amministratore del Mud. """ #= IMPORT ====================================================================== from src.command import get_command_syntax from src.config import co...
import string def generate_starts(prefix, words): starts = [] for w in words: if w.startswith(prefix): starts.append(w) return starts def generate_ends(sufix, words): ends = [] for w in words: if w.endswith(sufix): ends.append(w) return ends def gene...
from oocs.io import Config, message_add, quote class Packages(object): module_name = 'packages' def __init__(self, verbose=False): self.verbose = verbose self.scan = { 'module' : self.module_name, 'checks' : {}, 'status' : {} } try: ...
import sys from PySide.QtCore import * from PySide.QtGui import * from PySide.QtWebKit import * class Browser: def run(self): self.web = QWebView() self.web.load(QUrl("http://gabrielecirulli.github.io/2048/")) self.web.page().frameCreated.connect(self.onInit) self.web.show() d...
""" The module implements page downloading. done Authors: songyue02(<EMAIL>) Date: 2016/06/04 """ import re import logging import requests # get log singleton log = logging.getLogger('Spider.crawler') def make_url_good(raw_value): """ Deal with the http header of url Args: ...
from ....const import GRAMPS_LOCALE as glocale _ = glocale.get_translation().gettext #------------------------------------------------------------------------- # # GRAMPS modules # #------------------------------------------------------------------------- from .._regexpidbase import RegExpIdBase #--------------------...
from __future__ import print_function import pytest from SumList import sum_value '''Arguments as lists''' only_numbers = [1, 2, 3, 4] numbers_as_string = ['1', '2', '3', '4'] combined_string_numbers = ['1', 2, 3, '4'] fail_not_number = ['d', '1', 3] empty_list = [] with_floats_to_int = ['1.0', '2.0', 3, '4'] with_fl...
"""Benchmark for Keras text vectorization preprocessing layer's adapt method.""" from __future__ import absolute_import from __future__ import division from __future__ import print_function import time import numpy as np from tensorflow.python import keras from tensorflow.python.compat import v2_compat from tensorfl...
import sys import socket import unittest import test_utils sys.path.insert(1, sys.path[0]+'/../../../python') from pysandesh.sandesh_base import * from gen_py.msg_test.ttypes import * class SandeshTraceTest(unittest.TestCase): def setUp(self): self._sandesh = Sandesh() http_port = test_utils.get_...
import os from rbuild_test import rbuildhelp from testutils import mock from conary.lib import util from conary import state from rbuild import errors from rpath_proddef import api1 as proddef from rbuild.productstore import abstract from rbuild.facade import conaryfacade from rbuild_test.unit_test.facadetest impo...
"""Tests for tfx.orchestration.google.beam_dag_runner.""" from __future__ import absolute_import from __future__ import division from __future__ import print_function import sys import unittest from unittest import mock import tensorflow as tf from tfx import types from tfx.dsl.components.base import base_component ...
from django import http from django.db.transaction import non_atomic_requests from django.shortcuts import get_object_or_404 import commonware.log import mkt from mkt.access import acl from mkt.files.models import File from mkt.site.decorators import allow_cross_site_request from mkt.site.utils import get_file_respon...
"""Generate fixtures.""" import os import json import numpy as np from scipy.special import sici # Get the file path: FILE = os.path.realpath(__file__) # Extract the directory in which this file resides: DIR = os.path.dirname(FILE) def gen(x, name): """Generate fixture data and writes them to file. # Argu...
"""Support for Telldus Live.""" import asyncio import logging from functools import partial import voluptuous as vol import homeassistant.helpers.config_validation as cv from homeassistant import config_entries from homeassistant.const import CONF_SCAN_INTERVAL from homeassistant.helpers.dispatcher import async_dispa...
# -*- coding: utf-8 -*- """Definition and configuration of the Flask application.""" import flask.ext.restless as rest from flask import Flask, render_template from flask.ext.assets import Environment, Bundle from flask.ext.triangle import Triangle from readme.model import Recommendation from readme.db import sessi...
import os from utils import make_dir, INSTANCE_FOLDER_PATH, PROJECT_ROOT class BaseConfig(object): """base config object""" PROJECT = "refstack" # The app root path, also can use flask.root_path. PROJECT_ROOT = PROJECT_ROOT DEBUG = False TESTING = False ADMINS = ['<EMAIL>'] # http...
""" Sandbox Panel Estimators References ----------- Baltagi, Badi H. `Econometric Analysis of Panel Data.` 4th ed. Wiley, 2008. """ from scikits.statsmodels.tools.tools import categorical from scikits.statsmodels.regression.linear_model import GLS, WLS import numpy as np __all__ = ["PanelModel"] try: from pand...
import json from django.test import TestCase from accounts.models import ROLE_PARTNER from accounts.tests.factories import CtsUserFactory from accounts.utils import bootstrap_permissions class BaseAPITest(TestCase): def call_api(self, url, token=None): """ Call API with auth and return the respo...
from collections import defaultdict def flake8wrapper(f): f.name = __name__ f.version = '0.0.1' f.skip_on_py3 = False f.off_by_default = False return f @flake8wrapper def one_import_per_line(logical_line, tokens, filename, noqa): # Check if QA has to be skipped if noqa: return ...
# Fuck you Disyer. Stealing my fucking paypal. GET FUCKED: toontown.minigame.IceGameGlobals from panda3d.core import Point3 import math from toontown.toonbase import ToontownGlobals InputTimeout = 15 TireMovieTimeout = 120 MinWall = (-20.0, -15.0) MaxWall = (20.0, 15.0) TireRadius = 1.5 WallMargin = 1 + TireRa...
import os, sys, re path = [ ".", "..", "../..", "../../..", "../../../..", "../../../../..", "../../../../../..", "../../../../../../..", "../../../../../../../..", "../../../../../../../../.." ] head = os.path.dirname(sys.argv[0]) if len(head) > 0: path = [os.path.join(head, p) for p in path] path = [os....
from __future__ import division import re import numpy as np import sklearn.metrics as grading_metrics import properties if __name__=="__main__": string = open(properties.test_tagged_output_file).readlines() new_string = "" for line in string: class_label = line[0] new_string = new_string ...
from gnuradio import gr import sys def graph (args): nargs = len (args) if nargs == 1: infile = args[0] else: sys.stderr.write('usage: interp.py input_file\n') sys.exit (1) sampling_freq = 6400000 fg = gr.flow_graph () src0 = gr.file_source (gr.sizeof_gr_complex,infile) src1 = gr.sig...
version_str = '0.7' """ The current version string. """
#from .chx_libs import * from .chx_libs import db, get_images, get_table, get_events, get_fields, np, plt , LogNorm from .chx_generic_functions import show_img def get_frames_from_dscan( hdr, detector = 'eiger4m_single_image' ): ev = get_events(hdr, [detector]) length = int( hdr['start']['plan_args']['num'...
# -*- coding: utf-8 -*- """ gspread.client ~~~~~~~~~~~~~~ This module contains Client class responsible for communicating with Google Data API. """ import re import warnings from xml.etree import ElementTree from . import __version__ from . import urlencode from .ns import _ns from .httpsession import HTTPSession,...
import sys import os import csv import time import numpy as np from crow.utils import * def load_csv(filename, delimiter=','): # loads csv file into array of rows (arrays) csv.field_size_limit(sys.maxsize) fp = open(filename) if not fp: print "Error: Cannot open file: %s" % filename re...
# testDictionary.py # import sys import win32com.server.util import win32com.test.util import win32com.client import traceback import pythoncom import pywintypes import winerror import unittest error = "dictionary test error" def MakeTestDictionary(): return win32com.client.Dispatch("Python.Dictionary") def Tes...
import copy from tempest.lib.api_schema.response.compute.v2_71 import servers as servers271 ########################################################################### # # 2.73: # # The locked_reason parameter is now returned in the response body of the # following calls: # # - POST /servers/{server_id}/action (wher...
#set($hashtags = '##############################################################################') ${hashtags} # ${PRODUCT_NAME} # -*- coding: utf-8 -*- """ ${PROJECT_NAME} ${NAME} updated on ${DATE} at ${TIME} ${hashtags} Input: Output: Description: ${hashtags} @author: ${USER} """ ${hashtags} # Librar...
from datetime import date # Main section # ------------ title = 'Millainen on Hämeentien tulevaisuus?' slug = 'hameentie' main_image = { 'filename': 'images/hameentie/main_image.jpg', 'caption': ( 'Liikenne nykyisin Hämeentiellä. ' '(Helsingin kaupungin aineistopankki / Seppo Laakso)' )...
import parse from errors import * edit_cmds = {} def edit_func(name): def _edit_func(f): edit_cmds.setdefault(name, f) return f return _edit_func @edit_func('target-rev') def target_rev(command, args): rev = int(args[0]) command.target_rev(rev) @edit_func('open-root') def open_...
import os import time from django.shortcuts import render from django.http import HttpResponse from django.contrib.auth.decorators import login_required from django.contrib.auth.models import User from account.models import Businesses,Privileges,UserProfiles from groups.models import Groups,Hosts from states_config.m...
import sys import csv import warnings from gridsim.decorators import accepts, returns class Reader(object): def __init__(self): """ __init__(self) This class is the based class of all readers/loaders. """ super(Reader, self).__init__() def clear(self): """ ...
import gtk import pango from umit.pm.core.logger import log from umit.pm.gui.core.app import PMApp from umit.pm.gui.plugins.engine import Plugin from umit.pm.gui.sessions import SessionType from umit.pm.gui.pages.base import Perspective from umit.pm.core.errors import PMErrorException class Explorer(Perspective): ...
# -*- coding: utf-8 -*- import time import re from cStringIO import StringIO from Sycamore import wikiutil from Sycamore import config from Sycamore import wikidb from Sycamore import user from Sycamore.Page import Page def execute(macro, args, formatter=None): if not formatter: formatter = macro.format...
from oslo_log import log as logging from oslo_utils import uuidutils from sqlalchemy.orm import exc from baremetal_network_provisioning.db import bm_nw_provision_models as models from neutron._i18n import _LE from neutron._i18n import _LI from neutron.db import models_v2 LOG = logging.getLogger(__name__) def get_...
"""ORCID util tests.""" from __future__ import absolute_import, division, print_function import pytest from sqlalchemy.orm.exc import MultipleResultsFound, NoResultFound from inspire_dojson.utils import get_record_ref from inspire_schemas.api import validate from inspirehep.modules.records.api import InspireRecord f...
import ssl from urllib.parse import urlparse from flask import current_app from ldap3 import Connection, Server, Tls from app.utils.onelogin.saml2.auth import OneLogin_Saml2_Auth from app.utils.onelogin.saml2.utils import OneLogin_Saml2_Utils def ldap_authentication(email, password): """ Authenticate the pro...
from weboob.capabilities.recipe import ICapRecipe, Recipe from weboob.tools.backend import BaseBackend from .browser import SevenFiftyGramsBrowser import unicodedata def strip_accents(s): return ''.join(c for c in unicodedata.normalize('NFD', s) if unicodedata.category(c) != 'Mn') __all__ = ['SevenFiftyGramsBac...
""" Tests for vertical module. """ from fs.memoryfs import MemoryFS from xmodule.tests import get_test_system from xmodule.tests.xml import XModuleXmlImportTest from xmodule.tests.xml import factories as xml class BaseVerticalModuleTest(XModuleXmlImportTest): test_html_1 = 'Test HTML 1' test_html_2 = 'Test H...
from cloudify_rest_client.responses import ListResponse class Execution(dict): """Cloudify workflow execution.""" TERMINATED = 'terminated' FAILED = 'failed' CANCELLED = 'cancelled' PENDING = 'pending' STARTED = 'started' CANCELLING = 'cancelling' FORCE_CANCELLING = 'force_cancelling' ...
#!/usr/bin/python3 # -*- coding: utf-8 -*- '''Pychemqt, Chemical Engineering Process simulator Copyright (C) 2009-2017, Juan José Gómez Romera <<EMAIL>> This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundatio...
""" Unpack beacon advertising packets """ # pkt[0] = Packet Type (Filter ensures we only get 0x04) Is packet type? # pkt[1] = HCI event type (We only interested in 0x3e?) LE Meta Event # pkt[2] = Length of packet # pkt[3] = LE Meta Event sub event (see LE_META_EVENT_LOOKUP) # pkt[4] = Number of reports in packet # pkt[...
import unittest import numpy as np from op_test import OpTest class TestFlattenOp(OpTest): def setUp(self): self.op_type = "flatten" self.init_test_case() self.inputs = {"X": np.random.random(self.in_shape).astype("float32")} self.init_attrs() self.outputs = {"Out": self.i...
from odoo import models, api class MassReconcileSimple(models.AbstractModel): _name = 'mass.reconcile.simple' _inherit = 'mass.reconcile.base' # has to be subclassed # field name used as key for matching the move lines _key_field = None @api.multi def rec_auto_lines_simple(self, lines): ...
""" Mixins for fixing the time zones support in the class based generic views for archives. This module must be removed in Django 1.5. https://code.djangoproject.com/ticket/18217 """ import datetime from django.conf import settings from django.utils import timezone from django.views.generic.dates import _date_from_s...
config_extension_def = """ [EventLoop] enable=1 active=False toolkit=TK [EventLoop_cfgBindings] eventloop-toggle=<Key-F7> """ INTERVAL = 100 # milliseconds INSTALL_DELAY = 250 # milliseconds from idlelib.configHandler import idleConf import sys if sys.version < '3': from Tkinter import * else: ...
import hashlib import unittest import os import numpy as np import time import sys import random import functools import contextlib from PIL import Image import math from paddle.dataset.common import download import tarfile import StringIO random.seed(0) np.random.seed(0) DATA_DIM = 224 SIZE_FLOAT32 = 4 SIZE_INT64 = ...
import sublime import sublime_plugin import os import fnmatch import threading import json from base64 import standard_b64encode try: from urllib.request import Request, urlopen from urllib.error import HTTPError except ImportError: from urllib2 import Request, HTTPError, urlopen TINYPNG_URL = 'http://api...
"""Tests for :mod:`gwdetchar.utils` """ import pytest import numpy from gwpy.segments import ( DataQualityFlag, DataQualityDict, ) from gwpy.table import EventTable from gwpy.testing.utils import assert_table_equal from .. import utils @pytest.mark.parametrize('in_, out', [ ([1, 2, 3], [1, 2, 3]), ...
from fluous.gobject import connect from gi.repository import Gtk, GLib, GObject from nete.components.info_bar import ConnectedInfoBar from nete.components.note_text_view import ConnectedNoteTextView from nete.components.toolbar import ConnectedToolbar class NoteView(Gtk.Bin): is_note_selected = GObject.Property(...
# PROBLEM: We scraped our table, but there's actually information on the detail page # we want to have in our result. # # HOW WE'RE GOING TO DEAL WITH IT: # - Do everything we did before: fetch a page, navigate it and output to csv # - Refine our script to dip into the detail page for each reactor # - Use pattern...
import pytest from shoop.notify import Context from shoop_tests.notify.fixtures import get_initialized_test_event @pytest.mark.django_db def test_log_entries(): event = get_initialized_test_event() ctx = Context.from_event(event) order = ctx.get("order") n_log_entries = ctx.log_entry_queryset.count()...
# Toy example # # Source: http://nbviewer.ipython.org/github/craffel/theano-tutorial/blob/master/Theano%20Tutorial.ipynb # # We'll train our neural network to classify two Gaussian-distributed clusters # in 2d space. # # Defining a multilayer perceptron is out of the scope of this tutorial; # please see here for backgr...
#!/usr/bin/env python '''This runs Apache Status on the remote host and returns the number of requests per second. ./astat.py [-s server_hostname] [-u username] [-p password] -s : hostname of the remote server to login to. -u : username to user for login. -p : Password to user for login. Example: Thi...
import numpy import chainer from chainer.functions.activation import sigmoid from chainer.functions.activation import tanh from chainer.functions.array import concat from chainer.functions.math import linear_interpolate from chainer import link from chainer.links.connection import linear class MGUBase(link.Chain): ...
'''Sana mDS(mobile Dispatch Server) The mDS API is designed takes a RESTful approach to data packetization using a CRUD implementation based on the Django-piston API. The API declares the following objects: Binary - a binary blob Client - something that talks to the server Encounter - an instance of dat...
from copy import deepcopy import sqlalchemy as sa from jsonschema import ValidationError, validate from jsonschema.validators import Draft4Validator, create from myreco.engine_strategies.filters.filters import BooleanFilterBy from myreco.item_types._store_items_model_meta import _StoreItemsModelBaseMeta from myreco.ut...
"""Version.""" # (major, minor, micro, release type, pre-release build, post-release build) version_info = (4, 5, 1, 'final', 0, 0) def _version(): """ Get the version (PEP 440). Version structure (major, minor, micro, release type, pre-release build, post-release build) Release names are na...
try: from setuptools import setup, find_packages except ImportError: from distutils.core import setup config = { 'description': 'BioMAJ', 'author': 'Olivier Sallou', 'url': 'http://biomaj.genouest.org', 'download_url': 'http://biomaj.genouest.org', 'author_email': '<EMAIL>', 'version': ...
import os from .base import BASE_DIR # Python Social auth AUTHENTICATION_BACKENDS = ( # Facebook Social auth 'social.backends.facebook.FacebookOAuth2', # Kakao talk Social auth 'social.backends.kakao.KakaoOAuth2', # django defualt 'django.contrib.auth.backends.ModelBac...
from unittest import TestCase, mock from test.util import Anything from mycroft.util import (play_ogg, play_mp3, play_wav, play_audio_file, record) from mycroft.util.file_utils import get_temp_path test_config = { 'play_wav_cmdline': 'mock_wav %1', 'play_mp3_cmdline': 'mock_mp3 %1', ...
import argparse import os import cdpybio as cpb def main(): parser = argparse.ArgumentParser( description=('Count number of reads supporting each base for different ' 'genomic positions. You can provide a VCF file or a bed ' 'file to specifiy the positions to coun...
import inspect from werkzeug.exceptions import Forbidden # These have to be imported for the permission system to work import account # NOQA import dataset # NOQA from flask import abort from functools import wraps from flask.ext.login import current_user from openspending.auth.perms import is_authenticated, is_mod...
# -*- coding: utf-8 -*- from __future__ import unicode_literals from django.db import migrations, models from django.conf import settings class Migration(migrations.Migration): dependencies = [ migrations.swappable_dependency(settings.AUTH_USER_MODEL), ('products', '0006_productfeatured'), ]...
import functools import hashlib import logging import os import re import sys try: import csscompressor except ImportError: logging.critical('Cannot import the third-party Python package csscompressor') sys.exit(1) try: import jsmin except ImportError: logging.critical('Cannot import the third-party Python ...
# coding=utf-8 """Reclassify a raster layer.""" from os.path import isfile import numpy as np from osgeo import gdal from qgis.core import QgsRasterLayer from safe.common.exceptions import ( FileNotFoundError, InvalidKeywordsForProcessingAlgorithm) from safe.common.utilities import unique_filename, temp_dir fro...
from numpy import pi as _pi def sphere(target, pore_diameter='pore.diameter'): r""" Calculate cross-sectional area assuming the pore body is a sphere Parameters ---------- target : OpenPNM Geometry Object The Geometry object which this model is associated with. This controls the l...
""" .. module: cloudaux.gcp.gcs :platform: Unix :copyright: (c) 2016 by Google Inc., see AUTHORS for more :license: Apache, see LICENSE for more details. .. moduleauthor:: Tom Melendez (@supertom) <<EMAIL>> """ from cloudaux.gcp.decorators import gcp_conn @gcp_conn('gcs') def list_buckets(client=None, **kw...
import unittest import numpy import chainer from chainer import cuda from chainer import functions from chainer import testing from chainer.testing import attr def _to_gpu(x, device_id): if device_id >= 0: return cuda.to_gpu(x, device_id) else: return x class Copy(unittest.TestCase): ...
__author__ = 'chris' from zope.interface.verify import verifyObject from txrudp.rudp import ConnectionMultiplexer from txrudp.connection import HandlerFactory, Handler, State from txrudp.crypto_connection import CryptoConnectionFactory from twisted.internet.task import LoopingCall from twisted.internet import task, rea...
import os import pipes import stat import subprocess try: import MySQLdb except ImportError: mysqldb_found = False else: mysqldb_found = True # =========================================== # MySQL module specific support methods. # def db_exists(cursor, db): res = cursor.execute("SHOW DATABASES LIKE %...
""" created 2017 by Jens Diemer <<EMAIL>> """ import logging from django.core.urlresolvers import NoReverseMatch, reverse from django.utils.translation import ugettext_lazy as _ from cms.toolbar_base import CMSToolbar from cms.toolbar_pool import toolbar_pool from cms.utils.urlutils import admin_reverse fro...
from less.settings import LESS_MTIME_DELAY from django.core.cache import cache from django.utils.encoding import smart_str from hashlib import md5 import os.path import socket def get_hexdigest(plaintext, length=None): digest = md5(smart_str(plaintext)).hexdigest() if length: return digest[:length] ...
from . import TestCase, unittest from contextlib import nested import os import mock import juicer.config # When the config file is read in and parsed it will turn into a dict # like this serialized_config = { "qa": { "ca_path": "/home/testuser/certs/pulp.crt", "cert_filename": "/home/testuser/cer...
import os import time import requests import core from core.nzbToMediaSceneExceptions import process_all_exceptions from core.nzbToMediaUtil import convert_to_ascii, rmDir, find_imdbid, find_download, listMediaFiles, remoteDir, import_subs, server_responding, reportNzb from core import logger from core.transcoder impo...
# -*- coding: utf-8 -*- """ Author: Bernhard Scheirle """ from __future__ import unicode_literals import logging import os import hashlib import urllib.parse import urllib.request logger = logging.getLogger(__name__) _log = "pelican_comment_system: avatars: " try: from . identicon import identicon _identic...
""" Calculate New conditions given a new and an old MAS rate Use condition name specifically calculate that parameter, i.e. if you only want to run a subset Arguments: -n New MAS Rate -o Old MAS Rate Specify Conditions to calculate: HC HN NCA NCO NC (both NCA and NCO) """ ret=u"\u000D" spc=u"\u0020" import sys fro...
# encoding: UTF-8 # 重载sys模块,设置默认字符串编码方式为utf8 import sys try: reload(sys) # Python 2 sys.setdefaultencoding('utf8') except NameError: pass # Python 3 from time import sleep # vn.trader模块 from vnpy.event import EventEngine from vnpy.trader.vtEngine import MainEngine, LogEngine from vnpy.trader.uiQ...
"""Unit tests for `biggus._init.NewAxesArray`.""" import unittest import numpy as np from numpy.testing import assert_array_equal from biggus._init import NewAxesArray, ConstantArray, NumpyArrayAdapter class Test___init__(unittest.TestCase): def test_too_few_axes(self): in_arr = ConstantArray([3, 2]) ...
"""Reference implementation for Blech32 and segwit addresses.""" CHARSET = "qpzry9x8gf2tvdw0s3jn54khce6mua7l" def blech32_polymod(values): """Internal function that computes the blech32 checksum.""" generator = [0x7d52fba40bd886, 0x5e8dbf1a03950c, 0x1c3a3c74072a18, 0x385d72fa0e5139, 0x7093e5a608865b] # new g...
#!/usr/bin/env python # -*- coding: utf-8 -*- from distutils.core import setup setup( name='Pafy', py_modules=['pafy'], version='0.3.23', description="Python API for YouTube, query and download YouTube content", keywords=["Pafy", "API", "YouTube", "youtube", "download", "video"], author="nagev...
#!/usr/bin/env python # -*- coding: utf-8 -*- # # Bed and VCF files should be sorted. Bed should have no header. # Bed should be gziped. VCH should be bgzip and indexed with tabix. # import gzip import vcf import collections import sys import argparse def main(): # Args args = parse_arguments() # Initia...
import logging from django.conf import settings from django.core.urlresolvers import reverse from django.utils.translation import ugettext_lazy as _ from horizon import exceptions from horizon import forms from horizon import messages from openstack_dashboard import api LOG = logging.getLogger(__name__) VNIC_TYPES...
import functions import sklearnClassify import random def learnfunction(path, pathTweet, numberUsedAll, numberUnlabeled, algorithm, removeWords): numberForTraining = int (0.8 * numberUsedAll) numberForTesting = int (0.2 * numberUsedAll) input_list, input_score = functions.readTestComment(path, numberUsedA...
from sys import argv tablacodon = { 'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M', 'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T', 'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K', 'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R', 'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L', 'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P', 'CAC':'H', '...
from functools import partial from pcs.lib import reports from pcs.lib.cib import sections from pcs.lib.cib.nvpair import arrange_first_meta_attributes from pcs.lib.cib.tools import IdProvider def _set_any_defaults(section_name, env, options): """ string section_name -- determine the section of defaults ...
from django.conf.urls import url import bdo_main_app.views as views import service_builder.views as sb_views urlpatterns = [ # home & signup url('^$', views.home, name='home'), url('^bdo/$', views.dataset_search, name='bdo'), url('^search/$', views.search, name='search'), url('^exploretools/$', vi...
from sqlalchemy import case, func import airflow from airflow.ti_deps.deps.base_ti_dep import BaseTIDep from airflow.utils.db import provide_session from airflow.utils.state import State class TriggerRuleDep(BaseTIDep): """ Determines if a task's upstream tasks are in a state that allows a given task instanc...
from django.conf import settings from django.conf.urls import patterns, include, url from django.views.decorators.cache import cache_page from django.views.i18n import javascript_catalog from localeurl.sitemaps import LocaleurlSitemap from localeurl.templatetags.localeurl_tags import chlocale from rando.flatpages.mod...
import unittest import os import logging import shutil import setup_logging class TestCentralLogger(unittest.TestCase): def setUp(self): # Remove 'logs' directory. self.logs_dir = setup_logging.get_log_path() shutil.rmtree(self.logs_dir, ignore_errors=True) # Stan...
""" do the unit tests! """ import os import re import sys import unittest from optparse import OptionParser import ssh import threading sys.path.append('tests') from test_message import MessageTest from test_file import BufferedFileTest from test_buffered_pipe import BufferedPipeTest from test_util import UtilTest f...
""" Serializer for video outline """ from edxval.api import ValInternalError, get_video_info_for_course_and_profiles from rest_framework.reverse import reverse from courseware.access import has_access from courseware.courses import get_course_by_id from courseware.model_data import FieldDataCache from courseware.modul...
#!/usr/bin/env python """ This script is used to map fastq files to the genome. The input is a comma separated list of fastq[.gz] files (or two lists if the input is paired-end). The output are bam files with the mapped reads, a table containing the number of reads mapped to each gene and a wiggle file with the covera...
from setuptools import setup, find_packages from src import mx MAJOR_VERSION = '0' MINOR_VERSION = '2' MICRO_VERSION = '18' VERSION = '{}.{}.{}'.format(MAJOR_VERSION, MINOR_VERSION, MICRO_VERSION) setup( name='rafi.mx', version=VERSION, description='Workspace/project-oriented tmux/git personal assistant.'...