repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
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|---|---|---|---|---|---|---|
ADaPTION | ADaPTION-master/frcnn/tools/lp_train_faster_rcnn_alt_opt.py | #!/usr/bin/env python
# --------------------------------------------------------
# Faster R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Train a Faster R-CNN network using alternat... | 12,772 | 36.130814 | 80 | py |
ADaPTION | ADaPTION-master/frcnn/tools/train_svms.py | #!/usr/bin/env python
# --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""
Train post-hoc SVMs using the algorithm and ... | 13,480 | 37.081921 | 80 | py |
ADaPTION | ADaPTION-master/frcnn/tools/eval_recall.py | #!/usr/bin/env python
import _init_paths
from fast_rcnn.config import cfg, cfg_from_file, cfg_from_list
from datasets.factory import get_imdb
import argparse
import time, os, sys
import numpy as np
def parse_args():
"""
Parse input arguments
"""
parser = argparse.ArgumentParser(description='Test a Fas... | 2,265 | 30.915493 | 77 | py |
ADaPTION | ADaPTION-master/frcnn/tools/rpn_generate.py | #!/usr/bin/env python
# --------------------------------------------------------
# Fast/er/ R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Generate RPN proposals."""
import _init_... | 2,994 | 31.554348 | 78 | py |
ADaPTION | ADaPTION-master/frcnn/tools/train_net.py | #!/usr/bin/env python
# --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Train a Fast R-CNN network on a region of int... | 3,747 | 32.168142 | 78 | py |
ADaPTION | ADaPTION-master/frcnn/lib/setup.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import os
from os.path import join as pjoin
from setuptools import setu... | 5,684 | 35.210191 | 90 | py |
ADaPTION | ADaPTION-master/frcnn/lib/roi_data_layer/layer.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""The data layer used during training to train a Fast R-CNN network.
... | 7,449 | 36.817259 | 81 | py |
ADaPTION | ADaPTION-master/frcnn/lib/roi_data_layer/roidb.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Transform a roidb into a trainable roidb by adding a bunch of metada... | 5,611 | 40.880597 | 80 | py |
ADaPTION | ADaPTION-master/frcnn/lib/roi_data_layer/minibatch.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Compute minibatch blobs for training a Fast R-CNN network."""
impor... | 8,169 | 39.85 | 81 | py |
ADaPTION | ADaPTION-master/frcnn/lib/roi_data_layer/__init__.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
| 248 | 34.571429 | 58 | py |
ADaPTION | ADaPTION-master/frcnn/lib/fast_rcnn/test.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Test a Fast R-CNN network on an imdb (image database)."""
from fast... | 11,126 | 35.601974 | 83 | py |
ADaPTION | ADaPTION-master/frcnn/lib/fast_rcnn/bbox_transform.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import numpy as np
def bbox_transform(ex_rois, gt_rois):
ex_widths... | 2,540 | 32 | 79 | py |
ADaPTION | ADaPTION-master/frcnn/lib/fast_rcnn/nms_wrapper.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
from fast_rcnn.config import cfg
from nms.gpu_nms import gpu_nms
from n... | 642 | 29.619048 | 60 | py |
ADaPTION | ADaPTION-master/frcnn/lib/fast_rcnn/config.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Fast R-CNN config system.
This file specifies default config option... | 9,213 | 31.216783 | 91 | py |
ADaPTION | ADaPTION-master/frcnn/lib/fast_rcnn/__init__.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
| 248 | 34.571429 | 58 | py |
ADaPTION | ADaPTION-master/frcnn/lib/fast_rcnn/train.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Train a Fast R-CNN network."""
import caffe
from fast_rcnn.config i... | 6,076 | 36.282209 | 79 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/kitti.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import os
from datasets.imdb import imdb
import datasets.ds_utils as ds... | 14,015 | 39.626087 | 86 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/voc_eval.py | # --------------------------------------------------------
# Fast/er R-CNN
# Licensed under The MIT License [see LICENSE for details]
# Written by Bharath Hariharan
# --------------------------------------------------------
import xml.etree.ElementTree as ET
import os
import cPickle
import numpy as np
def parse_rec(f... | 7,058 | 33.773399 | 78 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/pascal_voc.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import os
from datasets.imdb import imdb
import datasets.ds_utils as ds... | 14,542 | 40.081921 | 80 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/imdb.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import os
import os.path as osp
import PIL
from utils.cython_bbox impor... | 9,811 | 37.629921 | 80 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/factory.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Factory method for easily getting imdbs by name."""
__sets = {}
fr... | 1,621 | 30.803922 | 79 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/ds_utils.py | # --------------------------------------------------------
# Fast/er R-CNN
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import numpy as np
def unique_boxes(boxes, scale=1.0):
"""Return indices of unique boxes."""
... | 1,336 | 30.833333 | 72 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/__init__.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
| 248 | 34.571429 | 58 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/coco.py | # --------------------------------------------------------
# Fast/er R-CNN
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
from datasets.imdb import imdb
import datasets.ds_utils as ds_utils
from fast_rcnn.config import cf... | 16,560 | 40.926582 | 94 | py |
ADaPTION | ADaPTION-master/frcnn/lib/datasets/tools/mcg_munge.py | import os
import sys
"""Hacky tool to convert file system layout of MCG boxes downloaded from
http://www.eecs.berkeley.edu/Research/Projects/CS/vision/grouping/mcg/
so that it's consistent with those computed by Jan Hosang (see:
http://www.mpi-inf.mpg.de/departments/computer-vision-and-multimodal-
computing/research... | 1,451 | 36.230769 | 94 | py |
ADaPTION | ADaPTION-master/frcnn/lib/rpn/proposal_layer.py | # --------------------------------------------------------
# Faster R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick and Sean Bell
# --------------------------------------------------------
import caffe
import numpy as np
import yaml
from fast_r... | 7,171 | 37.352941 | 89 | py |
ADaPTION | ADaPTION-master/frcnn/lib/rpn/generate_anchors.py | # --------------------------------------------------------
# Faster R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick and Sean Bell
# --------------------------------------------------------
import numpy as np
# Verify that we compute the same a... | 3,110 | 28.349057 | 78 | py |
ADaPTION | ADaPTION-master/frcnn/lib/rpn/generate.py | # --------------------------------------------------------
# Faster R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
from fast_rcnn.config import cfg
from utils.blob import im_list_to_bl... | 3,894 | 32.008475 | 75 | py |
ADaPTION | ADaPTION-master/frcnn/lib/rpn/proposal_target_layer.py | # --------------------------------------------------------
# Faster R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick and Sean Bell
# --------------------------------------------------------
import caffe
import yaml
import numpy as np
import nump... | 7,494 | 37.634021 | 85 | py |
ADaPTION | ADaPTION-master/frcnn/lib/rpn/anchor_target_layer.py | # --------------------------------------------------------
# Faster R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick and Sean Bell
# --------------------------------------------------------
import os
import caffe
import yaml
from fast_rcnn.confi... | 11,575 | 39.055363 | 95 | py |
ADaPTION | ADaPTION-master/frcnn/lib/rpn/__init__.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick and Sean Bell
# --------------------------------------------------------
| 262 | 36.571429 | 58 | py |
ADaPTION | ADaPTION-master/frcnn/lib/pycocotools/cocoeval.py | __author__ = 'tsungyi'
import numpy as np
import datetime
import time
from collections import defaultdict
import mask
import copy
class COCOeval:
# Interface for evaluating detection on the Microsoft COCO dataset.
#
# The usage for CocoEval is as follows:
# cocoGt=..., cocoDt=... # load dataset... | 19,735 | 43.45045 | 131 | py |
ADaPTION | ADaPTION-master/frcnn/lib/pycocotools/__init__.py | __author__ = 'tylin'
| 21 | 10 | 20 | py |
ADaPTION | ADaPTION-master/frcnn/lib/pycocotools/coco.py | __author__ = 'tylin'
__version__ = '1.0.1'
# Interface for accessing the Microsoft COCO dataset.
# Microsoft COCO is a large image dataset designed for object detection,
# segmentation, and caption generation. pycocotools is a Python API that
# assists in loading, parsing and visualizing the annotations in COCO.
# Ple... | 14,881 | 41.278409 | 128 | py |
ADaPTION | ADaPTION-master/frcnn/lib/pycocotools/mask.py | __author__ = 'tsungyi'
import pycocotools._mask as _mask
# Interface for manipulating masks stored in RLE format.
#
# RLE is a simple yet efficient format for storing binary masks. RLE
# first divides a vector (or vectorized image) into a series of piecewise
# constant regions and then for each piece simply stores th... | 4,058 | 48.5 | 100 | py |
ADaPTION | ADaPTION-master/frcnn/lib/utils/timer.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import time
class Timer(object):
"""A simple timer."""
def __i... | 948 | 27.757576 | 71 | py |
ADaPTION | ADaPTION-master/frcnn/lib/utils/blob.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Blob helper functions."""
import numpy as np
import cv2
def im_lis... | 1,625 | 34.347826 | 75 | py |
ADaPTION | ADaPTION-master/frcnn/lib/utils/__init__.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
| 248 | 34.571429 | 58 | py |
ADaPTION | ADaPTION-master/frcnn/lib/transform/__init__.py | 0 | 0 | 0 | py | |
ADaPTION | ADaPTION-master/frcnn/lib/transform/torch_image_transform_layer.py | # --------------------------------------------------------
# Fast/er R-CNN
# Licensed under The MIT License [see LICENSE for details]
# --------------------------------------------------------
""" Transform images for compatibility with models trained with
https://github.com/facebook/fb.resnet.torch.
Usage in model p... | 2,000 | 29.784615 | 72 | py |
ADaPTION | ADaPTION-master/frcnn/lib/nms/py_cpu_nms.py | # --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
import numpy as np
def py_cpu_nms(dets, thresh):
"""Pure Python NM... | 1,051 | 25.974359 | 59 | py |
ADaPTION | ADaPTION-master/frcnn/lib/nms/__init__.py | 0 | 0 | 0 | py | |
selectionfunctions | selectionfunctions-main/setup.py | #!/usr/bin/env python
#
# setup.py
# Package "selectionfunctions" for pip.
#
# Copyright (C) 2019 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Licen... | 3,902 | 29.492188 | 95 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/sets.py | #!/usr/bin/env python
#
# sets.py
# Generates selection functions for combined samples (e.g. APOGEE + GaiaDR2)
#
# Copyright (C) 2020 Douglas Boubert & Andrew Everall
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | 5,309 | 30.987952 | 112 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/rrl_mateu_2020.py | #!/usr/bin/env python
#
# rrl_mateu_2020.py
# Implements querying of the completeness maps from
# Mateu, Holl, De Ridder & Rimoldini (2020).
#
# Copyright (C) 2020 Douglas Boubert & Andrew Everall
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public Li... | 10,575 | 39.992248 | 148 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/sfexceptions.py | #!/usr/bin/env python
#
# sfexceptions.py
# Defines exceptions for the selectionfunctions package.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; eithe... | 1,655 | 35 | 88 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/cog_v.py | #!/usr/bin/env python
#
# cog_vi.py
# Implements the selection function from Completeness
# of the Gaia-verse Paper IV, in prep.
#
# Copyright (C) 2021 Douglas Boubert & Andrew Everall
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as pub... | 39,144 | 40.118697 | 232 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/healpix_map.py | #!/usr/bin/env python
#
# healpix_map.py
# A set of HEALPix map classes.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License... | 4,333 | 36.042735 | 80 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/fetch_utils.py | #!/usr/bin/env python
#
# fetch_utils.py
# Utility funcgtions for fetching data files required by the selection functions library.
#
# Copyright (C) 2019 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the... | 15,289 | 33.359551 | 89 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/std_paths.py | #!/usr/bin/env python
#
# std_paths.py
# Defines a set of paths used by scripts in the selectionfunctions module.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Fou... | 1,766 | 30.553571 | 77 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/source.py | #!/usr/bin/env python
#
# source.py
# Provides a new class that extends astropy SkyCoord.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version... | 8,316 | 35.47807 | 136 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/config.py | #!/usr/bin/env python
#
# config.py
# Allow configuration options to be set.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Lic... | 4,772 | 33.839416 | 84 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/map.py | #!/usr/bin/env python
#
# map.py
# A generic interface to a 3D selection function.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of t... | 24,343 | 34.230101 | 112 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/equirectangular_map.py | #!/usr/bin/env python
#
# equirectangular_map.py
# Implements a class for querying selection functions that are stored in an
# Equirectangular projection.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public Lice... | 13,805 | 40.089286 | 88 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/__init__.py | #!/usr/bin/env python
#
# __init__.py
# Makes the contents of the package "dustmaps" discoverable.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; eithe... | 847 | 37.545455 | 73 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/cog_ii.py | #!/usr/bin/env python
#
# cog_ii.py
# Reads the Gaia DR2 selection function from Completeness
# of the Gaia-verse Paper II, Boubert & Everall (2020).
#
# Copyright (C) 2020 Douglas Boubert & Andrew Everall
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General ... | 10,361 | 37.377778 | 171 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/json_serializers.py | #!/usr/bin/env python
#
# json_serializers.py
# Contains JSON (de)serializers for:
# astropy.units.Quantity
# astropy.coordinates.SkyCoord
# numpy.ndarray
# numpy.dtype
# numpy.floating
# numpy.integer
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribut... | 11,780 | 27.59466 | 89 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/unstructured_map.py | #!/usr/bin/env python
#
# unstructured_map.py
# Implements a class for querying selection functions with unstructured pixels. Sky
# coordinates are assigned to the nearest pixel.
#
# Copyright (C) 2020 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the ... | 4,722 | 37.713115 | 90 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/examples/__init__.py | #!/usr/bin/env python
#
# __init__.py
# Makes the examples in the package "selectionfunctions" discoverable.
#
# Copyright (C) 2019 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundat... | 857 | 38 | 73 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/examples/FIRE/gobs_eff_query.py | import sys, pickle
sys.path.append('/home/andy/Documents/Research/software/')
import sqlutilpy, getdata, numpy as np, h5py
catalogue = "gaia_edr3.gaia_source"#"andy_everall.gaia3_rand100m"
query = f"""select floor(phot_g_mean_mag/0.1)*0.1 as magbin,
sum(phot_g_n_obs) as k,
sum(m... | 1,012 | 35.178571 | 67 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/examples/FIRE/gamp_query.py | import sys, pickle
sys.path.append('/home/andy/Documents/Research/software/')
import sqlutilpy, getdata, numpy as np, h5py
#catalogue = "gaia_edr3.gaia_source"
catalogue = "andy_everall.gaia3_rand100m"
query = f"""select floor(phot_g_mean_mag/0.1)*0.1 as magbin,
percentile_cont(0.5) within group (O... | 922 | 35.92 | 135 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/tests/test_cog_ii.py | #!/usr/bin/env python
#
# test_cog_ii.py
# Test query code for the Boubert & Everall (2020) selection function.
#
# Copyright (C) 2020 Douglas Boubert & Andrew Everall.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the ... | 3,672 | 31.794643 | 88 | py |
selectionfunctions | selectionfunctions-main/selectionfunctions/tests/__init__.py | #!/usr/bin/env python
#
# __init__.py
# Makes the tests in the package "selectionfunctions" discoverable.
#
# Copyright (C) 2019 Douglas Boubert
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation;... | 853 | 37.818182 | 73 | py |
selectionfunctions | selectionfunctions-main/docs/conf.py | # -*- coding: utf-8 -*-
#
# dustmaps documentation build configuration file, created by
# sphinx-quickstart on Fri Oct 14 17:20:58 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# ... | 11,441 | 27.605 | 80 | py |
imsrg | imsrg-master/src/pybind11/setup.py | #!/usr/bin/env python
# Setup script for PyPI; use CMakeFile.txt to build extension modules
from setuptools import setup
from pybind11 import __version__
import os
# Prevent installation of pybind11 headers by setting
# PYBIND11_USE_CMAKE.
if os.environ.get('PYBIND11_USE_CMAKE'):
headers = []
else:
headers =... | 3,646 | 40.91954 | 79 | py |
imsrg | imsrg-master/src/pybind11/tools/mkdoc.py | #!/usr/bin/env python3
#
# Syntax: mkdoc.py [-I<path> ..] [.. a list of header files ..]
#
# Extract documentation from C++ header files to use it in Python bindings
#
import os
import sys
import platform
import re
import textwrap
from clang import cindex
from clang.cindex import CursorKind
from collections import ... | 10,341 | 32.908197 | 127 | py |
imsrg | imsrg-master/src/pybind11/tools/libsize.py | from __future__ import print_function, division
import os
import sys
# Internal build script for generating debugging test .so size.
# Usage:
# python libsize.py file.so save.txt -- displays the size of file.so and, if save.txt exists, compares it to the
# size in it, then... | 1,098 | 27.179487 | 116 | py |
imsrg | imsrg-master/src/pybind11/pybind11/__main__.py | from __future__ import print_function
import argparse
import sys
import sysconfig
from . import get_include
def print_includes():
dirs = [sysconfig.get_path('include')]
if sysconfig.get_path('platinclude') not in dirs:
dirs.append(sysconfig.get_path('platinclude'))
if get_include() not in dirs:
... | 791 | 23.75 | 83 | py |
imsrg | imsrg-master/src/pybind11/pybind11/_version.py | version_info = (2, 2, 'dev0')
__version__ = '.'.join(map(str, version_info))
| 77 | 25 | 46 | py |
imsrg | imsrg-master/src/pybind11/pybind11/__init__.py | from ._version import version_info, __version__ # noqa: F401 imported but unused
def get_include(*args, **kwargs):
import os
try:
from pip import locations
return os.path.dirname(
locations.distutils_scheme('pybind11', *args, **kwargs)['headers'])
except ImportError:
r... | 336 | 27.083333 | 81 | py |
imsrg | imsrg-master/src/pybind11/tests/test_class.py | import pytest
from pybind11_tests import class_ as m
from pybind11_tests import UserType, ConstructorStats
def test_repr():
# In Python 3.3+, repr() accesses __qualname__
assert "pybind11_type" in repr(type(UserType))
assert "UserType" in repr(UserType)
def test_instance(msg):
with pytest.raises(Ty... | 4,550 | 34.007692 | 96 | py |
imsrg | imsrg-master/src/pybind11/tests/test_smart_ptr.py | import pytest
from pybind11_tests import ConstructorStats
def test_smart_ptr(capture):
# Object1
from pybind11_tests import (MyObject1, make_object_1, make_object_2,
print_object_1, print_object_2, print_object_3, print_object_4)
for i, o in enumerate([make_object_1(), mak... | 8,732 | 34.072289 | 97 | py |
imsrg | imsrg-master/src/pybind11/tests/test_builtin_casters.py | # Python < 3 needs this: coding=utf-8
import pytest
from pybind11_tests import builtin_casters as m
from pybind11_tests import UserType, IncType
def test_simple_string():
assert m.string_roundtrip("const char *") == "const char *"
def test_unicode_conversion():
"""Tests unicode conversion and error reporti... | 7,822 | 34.238739 | 97 | py |
imsrg | imsrg-master/src/pybind11/tests/conftest.py | """pytest configuration
Extends output capture as needed by pybind11: ignore constructors, optional unordered lines.
Adds docstring and exceptions message sanitizers: ignore Python 2 vs 3 differences.
"""
import pytest
import textwrap
import difflib
import re
import sys
import contextlib
import platform
import gc
_u... | 6,526 | 26.195833 | 93 | py |
imsrg | imsrg-master/src/pybind11/tests/test_buffers.py | import struct
import pytest
from pybind11_tests import Matrix, ConstructorStats, PTMFBuffer, ConstPTMFBuffer, DerivedPTMFBuffer
pytestmark = pytest.requires_numpy
with pytest.suppress(ImportError):
import numpy as np
def test_from_python():
with pytest.raises(RuntimeError) as excinfo:
Matrix(np.arra... | 2,430 | 27.940476 | 99 | py |
imsrg | imsrg-master/src/pybind11/tests/test_virtual_functions.py | import pytest
from pybind11_tests import virtual_functions as m
from pybind11_tests import ConstructorStats
def test_override(capture, msg):
class ExtendedExampleVirt(m.ExampleVirt):
def __init__(self, state):
super(ExtendedExampleVirt, self).__init__(state + 1)
self.data = "Hello... | 11,020 | 29.277473 | 103 | py |
imsrg | imsrg-master/src/pybind11/tests/test_constants_and_functions.py |
def test_constants():
from pybind11_tests import some_constant
assert some_constant == 14
def test_function_overloading():
from pybind11_tests import MyEnum, test_function
assert test_function() == "test_function()"
assert test_function(7) == "test_function(7)"
assert test_function(MyEnum.... | 1,100 | 24.022727 | 72 | py |
imsrg | imsrg-master/src/pybind11/tests/test_kwargs_and_defaults.py | import pytest
from pybind11_tests import (kw_func0, kw_func1, kw_func2, kw_func3, kw_func4, args_function,
args_kwargs_function, kw_func_udl, kw_func_udl_z, KWClass)
def test_function_signatures(doc):
assert doc(kw_func0) == "kw_func0(arg0: int, arg1: int) -> str"
assert doc(kw_fun... | 4,618 | 41.376147 | 119 | py |
imsrg | imsrg-master/src/pybind11/tests/test_modules.py |
def test_nested_modules():
import pybind11_tests
from pybind11_tests.submodule import submodule_func
assert pybind11_tests.__name__ == "pybind11_tests"
assert pybind11_tests.submodule.__name__ == "pybind11_tests.submodule"
assert submodule_func() == "submodule_func()"
def test_reference_interna... | 2,208 | 29.680556 | 90 | py |
imsrg | imsrg-master/src/pybind11/tests/test_pickling.py | import pytest
try:
import cPickle as pickle # Use cPickle on Python 2.7
except ImportError:
import pickle
def test_roundtrip():
from pybind11_tests import Pickleable
p = Pickleable("test_value")
p.setExtra1(15)
p.setExtra2(48)
data = pickle.dumps(p, 2) # Must use pickle protocol >= 2
... | 834 | 22.194444 | 62 | py |
imsrg | imsrg-master/src/pybind11/tests/test_copy_move.py | import pytest
from pybind11_tests import has_optional
def test_lacking_copy_ctor():
from pybind11_tests import lacking_copy_ctor
with pytest.raises(RuntimeError) as excinfo:
lacking_copy_ctor.get_one()
assert "the object is non-copyable!" in str(excinfo.value)
def test_lacking_move_ctor():
f... | 5,103 | 40.836066 | 99 | py |
imsrg | imsrg-master/src/pybind11/tests/test_methods_and_attributes.py | import pytest
from pybind11_tests import ExampleMandA, ConstructorStats
def test_methods_and_attributes():
instance1 = ExampleMandA()
instance2 = ExampleMandA(32)
instance1.add1(instance2)
instance1.add2(instance2)
instance1.add3(instance2)
instance1.add4(instance2)
instance1.add5(instanc... | 16,018 | 33.823913 | 107 | py |
imsrg | imsrg-master/src/pybind11/tests/test_docstring_options.py |
def test_docstring_options():
from pybind11_tests import (test_function1, test_function2, test_function3,
test_function4, test_function5, test_function6,
test_function7, DocstringTestFoo,
test_overloaded1, test_overloa... | 1,705 | 38.674419 | 87 | py |
imsrg | imsrg-master/src/pybind11/tests/test_eval.py | import os
def test_evals(capture):
from pybind11_tests import (test_eval_statements, test_eval, test_eval_single_statement,
test_eval_file, test_eval_failure, test_eval_file_failure)
with capture:
assert test_eval_statements()
assert capture == "Hello World!"
... | 560 | 27.05 | 92 | py |
imsrg | imsrg-master/src/pybind11/tests/test_opaque_types.py | import pytest
def test_string_list():
from pybind11_tests import StringList, ClassWithSTLVecProperty, print_opaque_list
l = StringList()
l.push_back("Element 1")
l.push_back("Element 2")
assert print_opaque_list(l) == "Opaque list: [Element 1, Element 2]"
assert l.back() == "Element 2"
f... | 1,869 | 35.666667 | 106 | py |
imsrg | imsrg-master/src/pybind11/tests/test_chrono.py |
def test_chrono_system_clock():
from pybind11_tests import test_chrono1
import datetime
# Get the time from both c++ and datetime
date1 = test_chrono1()
date2 = datetime.datetime.today()
# The returned value should be a datetime
assert isinstance(date1, datetime.datetime)
# The numb... | 3,402 | 27.123967 | 81 | py |
imsrg | imsrg-master/src/pybind11/tests/test_numpy_vectorize.py | import pytest
pytestmark = pytest.requires_numpy
with pytest.suppress(ImportError):
import numpy as np
def test_vectorize(capture):
from pybind11_tests import vectorized_func, vectorized_func2, vectorized_func3
assert np.isclose(vectorized_func3(np.array(3 + 7j)), [6 + 14j])
for f in [vectorized_f... | 8,887 | 42.568627 | 121 | py |
imsrg | imsrg-master/src/pybind11/tests/test_stl_binders.py | import pytest
import sys
with pytest.suppress(ImportError):
import numpy as np
def test_vector_int():
from pybind11_tests import VectorInt
v_int = VectorInt([0, 0])
assert len(v_int) == 2
assert bool(v_int) is True
v_int2 = VectorInt([0, 0])
assert v_int == v_int2
v_int2[1] = 1
... | 4,850 | 22.779412 | 96 | py |
imsrg | imsrg-master/src/pybind11/tests/test_call_policies.py | import pytest
def test_keep_alive_argument(capture):
from pybind11_tests import Parent, Child, ConstructorStats
n_inst = ConstructorStats.detail_reg_inst()
with capture:
p = Parent()
assert capture == "Allocating parent."
with capture:
p.addChild(Child())
assert Constructo... | 5,118 | 27.758427 | 79 | py |
imsrg | imsrg-master/src/pybind11/tests/test_multiple_inheritance.py | import pytest
from pybind11_tests import ConstructorStats
def test_multiple_inheritance_cpp():
from pybind11_tests import MIType
mt = MIType(3, 4)
assert mt.foo() == 3
assert mt.bar() == 4
def test_multiple_inheritance_mix1():
from pybind11_tests import Base2
class Base1:
def __in... | 9,277 | 25.737752 | 94 | py |
imsrg | imsrg-master/src/pybind11/tests/test_stl.py | import pytest
from pybind11_tests import stl as m
from pybind11_tests import UserType
def test_vector(doc):
"""std::vector <-> list"""
l = m.cast_vector()
assert l == [1]
l.append(2)
assert m.load_vector(l)
assert m.load_vector(tuple(l))
assert doc(m.cast_vector) == "cast_vector() -> Lis... | 5,124 | 31.643312 | 107 | py |
imsrg | imsrg-master/src/pybind11/tests/test_numpy_dtypes.py | import re
import pytest
pytestmark = pytest.requires_numpy
with pytest.suppress(ImportError):
import numpy as np
@pytest.fixture(scope='module')
def simple_dtype():
ld = np.dtype('longdouble')
return np.dtype({'names': ['bool_', 'uint_', 'float_', 'ldbl_'],
'formats': ['?', 'u4', 'f... | 11,824 | 35.723602 | 99 | py |
imsrg | imsrg-master/src/pybind11/tests/test_eigen.py | import pytest
pytestmark = pytest.requires_eigen_and_numpy
with pytest.suppress(ImportError):
import numpy as np
ref = np.array([[ 0., 3, 0, 0, 0, 11],
[22, 0, 0, 0, 17, 11],
[ 7, 5, 0, 1, 0, 11],
[ 0, 0, 0, 0, 0, 11],
... | 28,676 | 38.718837 | 99 | py |
imsrg | imsrg-master/src/pybind11/tests/test_operator_overloading.py | import pytest
from pybind11_tests import ConstructorStats
def test_operator_overloading():
from pybind11_tests.operators import Vector2, Vector
v1 = Vector2(1, 2)
v2 = Vector(3, -1)
assert str(v1) == "[1.000000, 2.000000]"
assert str(v2) == "[3.000000, -1.000000]"
assert str(v1 + v2) == "[4.... | 3,442 | 30.87963 | 93 | py |
imsrg | imsrg-master/src/pybind11/tests/test_enum.py | import pytest
def test_unscoped_enum():
from pybind11_tests import UnscopedEnum, EOne
assert str(UnscopedEnum.EOne) == "UnscopedEnum.EOne"
assert str(UnscopedEnum.ETwo) == "UnscopedEnum.ETwo"
assert str(EOne) == "UnscopedEnum.EOne"
# __members__ property
assert UnscopedEnum.__members__ == {"E... | 4,144 | 30.884615 | 93 | py |
imsrg | imsrg-master/src/pybind11/tests/test_eval_call.py | # This file is called from 'test_eval.py'
if 'call_test2' in locals():
call_test2(y) # noqa: F821 undefined name
| 119 | 23 | 46 | py |
imsrg | imsrg-master/src/pybind11/tests/test_exceptions.py | import pytest
def test_std_exception(msg):
from pybind11_tests import throw_std_exception
with pytest.raises(RuntimeError) as excinfo:
throw_std_exception()
assert msg(excinfo.value) == "This exception was intentionally thrown."
def test_error_already_set(msg):
from pybind11_tests import th... | 2,897 | 31.931818 | 89 | py |
imsrg | imsrg-master/src/pybind11/tests/test_pytypes.py | import pytest
import sys
from pybind11_tests import pytypes as m
from pybind11_tests import debug_enabled
def test_list(capture, doc):
with capture:
l = m.get_list()
assert l == ["overwritten"]
l.append("value2")
m.print_list(l)
assert capture.unordered == """
Entry a... | 5,777 | 26.254717 | 88 | py |
imsrg | imsrg-master/src/pybind11/tests/test_callbacks.py | import pytest
def test_callbacks():
from functools import partial
from pybind11_tests import (test_callback1, test_callback2, test_callback3,
test_callback4, test_callback5)
def func1():
return "func1"
def func2(a, b, c, d):
return "func2", a, b, c, d
... | 4,380 | 35.508333 | 99 | py |
imsrg | imsrg-master/src/pybind11/tests/test_sequences_and_iterators.py | import pytest
def isclose(a, b, rel_tol=1e-05, abs_tol=0.0):
"""Like math.isclose() from Python 3.5"""
return abs(a - b) <= max(rel_tol * max(abs(a), abs(b)), abs_tol)
def allclose(a_list, b_list, rel_tol=1e-05, abs_tol=0.0):
return all(isclose(a, b, rel_tol=rel_tol, abs_tol=abs_tol) for a, b in zip(a_l... | 5,189 | 30.26506 | 97 | py |
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