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CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_sliding_window/__init__.py
from nlpformat.in_mem_sliding_window import dataset from nlpformat.in_mem_sliding_window.dataset import InMemSlidingWindowDocDataset from nlpformat.in_mem_sliding_window.dataset import InMemSlidingWindowSentDataset
217
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_block/block_iterator_utils.py
"""Iterator utils.""" from __future__ import division import typing import warnings import random import datetime import numpy as np def cycle(iterator_fn: typing.Callable) -> typing.Iterable[typing.Any]: """Create a repeating iterator from an iterator generator.""" while True: for element in itera...
2,101
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_block/__init__.py
from nlpformat.in_mem_block import block_dataset from nlpformat.in_mem_block import block_iterator_utils from nlpformat.in_mem_block.block_dataset import InMemBlockDocDataset from nlpformat.in_mem_block.block_dataset import InMemBlockSentDataset
247
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_block/block_dataset.py
"""Load tfrecord files into torch datasets.""" import typing import numpy as np import datetime import random import time import os import torch.utils.data from nlpformat.loader import nlp_format_dataloader from nlpformat.in_mem_block import block_iterator_utils class InMemBlockDocDataset(torch.utils.data.Iterable...
7,594
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_bismarck/dataset.py
"""Load tfrecord files into torch datasets.""" import numpy as np import os import pickle import time import torch.utils.data from nlpformat.loader import nlp_format_dataloader from nlpformat.in_mem_bismarck import iterator_utils class InMemBismarckDocDataset(torch.utils.data.IterableDataset): def __init__(sel...
9,240
36.718367
159
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_bismarck/iterator_utils.py
"""Iterator utils.""" from __future__ import division import typing import warnings import random import io import pickle import numpy as np def cycle(iterator_fn: typing.Callable) -> typing.Iterable[typing.Any]: """Create a repeating iterator from an iterator generator.""" while True: for element ...
16,662
37.841492
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_bismarck/__init__.py
from nlpformat.in_mem_bismarck import dataset from nlpformat.in_mem_bismarck import iterator_utils from nlpformat.in_mem_bismarck.dataset import InMemBismarckDocDataset from nlpformat.in_mem_bismarck.dataset import InMemBismarckSentDataset
241
39.333333
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_once_fully_shuffle/dataset.py
import numpy as np import random import time import os import torch.utils.data from nlpformat.loader import nlp_format_dataloader class InMemOnceFullyShuffleDocDataset(torch.utils.data.Dataset): def __init__(self, data_folder: str, split: str, use_clustered_data: bool ...
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_once_fully_shuffle/__init__.py
from nlpformat.in_mem_once_fully_shuffle import dataset from nlpformat.in_mem_once_fully_shuffle.dataset import InMemOnceFullyShuffleDocDataset from nlpformat.in_mem_once_fully_shuffle.dataset import InMemOnceFullyShuffleSentDataset
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/loader/nlp_format_dataloader.py
"""Reader utils""" import time def get_current_time() : return time.strftime("%Y-%m-%d %H:%M:%S", time.localtime())
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/loader/__init__.py
from nlpformat.loader import nlp_format_dataloader
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50
50
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_block_only/block_only_dataset.py
"""Load tfrecord files into torch datasets.""" import numpy as np import random import time import os import torch.utils.data from nlpformat.loader import nlp_format_dataloader from nlpformat.in_mem_block_only import block_only_iterator_utils class InMemBlockOnlyDocDataset(torch.utils.data.IterableDataset): ...
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_block_only/__init__.py
from nlpformat.in_mem_block_only import block_only_dataset from nlpformat.in_mem_block_only import block_only_iterator_utils from nlpformat.in_mem_block_only.block_only_dataset import InMemBlockOnlyDocDataset from nlpformat.in_mem_block_only.block_only_dataset import InMemBlockOnlySentDataset
294
58
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_block_only/block_only_iterator_utils.py
"""Iterator utils.""" from __future__ import division import typing import warnings import random import datetime import numpy as np def cycle(iterator_fn: typing.Callable) -> typing.Iterable[typing.Any]: """Create a repeating iterator from an iterator generator.""" while True: for element in itera...
2,067
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_no_shuffle/dataset.py
import numpy as np import random import time import torch.utils.data from nlpformat.loader import nlp_format_dataloader """ Load data from manually preprocessed data (see ``datasets/prepocess/``). """ import os from typing import Tuple import torch from torch.utils.data import Dataset class InMemNoShuffleDocDat...
4,597
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/nlpformat/in_mem_no_shuffle/__init__.py
from nlpformat.in_mem_no_shuffle.dataset import InMemNoShuffleDocDataset from nlpformat.in_mem_no_shuffle.dataset import InMemNoShuffleSentDataset
148
36.25
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/__init__.py
from cifarformat import in_mem_block from cifarformat import in_mem_block_only from cifarformat import in_mem_sliding_window from cifarformat import in_mem_bismarck from cifarformat import in_mem_once_fully_shuffle from cifarformat import in_mem_always_fully_shuffle from cifarformat import in_mem_no_shuffle from cifarf...
339
41.5
51
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_sliding_window/dataset.py
import numpy as np import warnings import random import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader class InMemSlidingWindowCifarDataset(torch.utils.data.IterableDataset): def __init__(self, base_dir: str, use_clustered_data: bool, ...
2,903
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126
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_sliding_window/__init__.py
from cifarformat.in_mem_sliding_window import dataset from cifarformat.in_mem_sliding_window.dataset import InMemSlidingWindowCifarDataset
141
27.4
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_block/block_iterator_utils.py
"""Iterator utils.""" from __future__ import division import typing import warnings import random import datetime import numpy as np def cycle(iterator_fn: typing.Callable) -> typing.Iterable[typing.Any]: """Create a repeating iterator from an iterator generator.""" while True: for element in itera...
2,122
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_block/__init__.py
from cifarformat.in_mem_block import block_dataset from cifarformat.in_mem_block import block_iterator_utils from cifarformat.in_mem_block.block_dataset import InMemBlockCifarDataset
184
36
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_block/block_dataset.py
"""Load tfrecord files into torch datasets.""" import typing import numpy as np import datetime import random import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader from cifarformat.in_mem_block import block_iterator_utils class InMemBlockCifarDataset(torch.utils.data.IterableDa...
3,726
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_bismarck/dataset.py
"""Load tfrecord files into torch datasets.""" import numpy as np import os import pickle import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader from cifarformat.in_mem_bismarck import iterator_utils class InMemBismarckCifarDataset(torch.utils.data.IterableDataset): def __in...
4,460
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_bismarck/iterator_utils.py
"""Iterator utils.""" from __future__ import division import typing import warnings import random import io import pickle import numpy as np def cycle(iterator_fn: typing.Callable) -> typing.Iterable[typing.Any]: """Create a repeating iterator from an iterator generator.""" while True: for element ...
3,930
33.182609
120
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_bismarck/__init__.py
from cifarformat.in_mem_bismarck import dataset from cifarformat.in_mem_bismarck import iterator_utils from cifarformat.in_mem_bismarck.dataset import InMemBismarckCifarDataset
179
29
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_once_fully_shuffle/dataset.py
import numpy as np import random import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader class InMemOnceFullyShuffleCifarDataset(torch.utils.data.Dataset): def __init__(self, base_dir: str, use_clustered_data: bool, train...
2,060
29.761194
126
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_once_fully_shuffle/__init__.py
from cifarformat.in_mem_once_fully_shuffle import dataset from cifarformat.in_mem_once_fully_shuffle.dataset import InMemOnceFullyShuffleCifarDataset
150
49.333333
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_always_fully_shuffle/dataset.py
import numpy as np import random import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader class InMemAlwaysFullyShuffleCifarDataset(torch.utils.data.Dataset): def __init__(self, base_dir: str, use_clustered_data: bool, tra...
2,096
29.838235
126
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_always_fully_shuffle/__init__.py
from cifarformat.in_mem_always_fully_shuffle import dataset from cifarformat.in_mem_always_fully_shuffle.dataset import InMemAlwaysFullyShuffleCifarDataset
156
51.333333
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/loader/cifar_format_dataloader.py
"""Reader utils""" import os import time import numpy as np import torchvision import random class MY_CIFAR10(torchvision.datasets.CIFAR10): def __init__(self, root, train=True, use_clustered_data=True): super(MY_CIFAR10, self).__init__(root, train=train, transform=None, ...
1,059
29.285714
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/loader/__init__.py
from cifarformat.loader import cifar_format_dataloader
54
54
54
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_block_only/block_only_dataset.py
"""Load tfrecord files into torch datasets.""" import typing import numpy as np import datetime import random import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader from cifarformat.in_mem_block_only import block_only_iterator_utils class InMemBlockOnlyCifarDataset(torch.utils.d...
3,748
32.473214
126
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_block_only/__init__.py
from cifarformat.in_mem_block_only import block_only_dataset from cifarformat.in_mem_block_only import block_only_iterator_utils from cifarformat.in_mem_block_only.block_only_dataset import InMemBlockOnlyCifarDataset
218
42.8
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_block_only/block_only_iterator_utils.py
"""Iterator utils.""" from __future__ import division import typing import warnings import random import datetime import numpy as np def cycle(iterator_fn: typing.Callable) -> typing.Iterable[typing.Any]: """Create a repeating iterator from an iterator generator.""" while True: for element in itera...
2,057
24.097561
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_no_shuffle/dataset.py
import numpy as np import random import time import torch.utils.data from cifarformat.loader import cifar_format_dataloader class InMemNoShuffleCifarDataset(torch.utils.data.Dataset): def __init__(self, base_dir: str, use_clustered_data: bool, train=True, transf...
1,802
28.557377
126
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifarformat/in_mem_no_shuffle/__init__.py
from cifarformat.in_mem_no_shuffle import dataset from cifarformat.in_mem_no_shuffle.dataset import InMemNoShuffleCifarDataset
127
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/cifar_dl_bench_train.py
'''Train CIFAR10 with PyTorch.''' import torch import torch.nn as nn import torch.optim as optim import torch.nn.functional as F import torch.backends.cudnn as cudnn import torchvision import torchvision.transforms as transforms import os import argparse import sys import time import random sys.path.append("../cifa...
14,325
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/dla.py
'''DLA in PyTorch. Reference: Deep Layer Aggregation. https://arxiv.org/abs/1707.06484 ''' import torch import torch.nn as nn import torch.nn.functional as F class BasicBlock(nn.Module): expansion = 1 def __init__(self, in_planes, planes, stride=1): super(BasicBlock, self).__init__() sel...
4,425
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83
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/shufflenetv2.py
'''ShuffleNetV2 in PyTorch. See the paper "ShuffleNet V2: Practical Guidelines for Efficient CNN Architecture Design" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class ShuffleBlock(nn.Module): def __init__(self, groups=2): super(ShuffleBlock, self).__init__() ...
5,530
32.932515
107
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/regnet.py
'''RegNet in PyTorch. Paper: "Designing Network Design Spaces". Reference: https://github.com/keras-team/keras-applications/blob/master/keras_applications/efficientnet.py ''' import torch import torch.nn as nn import torch.nn.functional as F class SE(nn.Module): '''Squeeze-and-Excitation block.''' def __in...
4,548
28.160256
106
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/efficientnet.py
'''EfficientNet in PyTorch. Paper: "EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks". Reference: https://github.com/keras-team/keras-applications/blob/master/keras_applications/efficientnet.py ''' import torch import torch.nn as nn import torch.nn.functional as F def swish(x): return x ...
5,719
31.5
106
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/pnasnet.py
'''PNASNet in PyTorch. Paper: Progressive Neural Architecture Search ''' import torch import torch.nn as nn import torch.nn.functional as F class SepConv(nn.Module): '''Separable Convolution.''' def __init__(self, in_planes, out_planes, kernel_size, stride): super(SepConv, self).__init__() se...
4,258
32.801587
105
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/resnet.py
'''ResNet in PyTorch. For Pre-activation ResNet, see 'preact_resnet.py'. Reference: [1] Kaiming He, Xiangyu Zhang, Shaoqing Ren, Jian Sun Deep Residual Learning for Image Recognition. arXiv:1512.03385 ''' import torch import torch.nn as nn import torch.nn.functional as F class BasicBlock(nn.Module): expansi...
4,218
30.721805
83
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/dla_simple.py
'''Simplified version of DLA in PyTorch. Note this implementation is not identical to the original paper version. But it seems works fine. See dla.py for the original paper version. Reference: Deep Layer Aggregation. https://arxiv.org/abs/1707.06484 ''' import torch import torch.nn as nn import torch.nn.function...
4,084
30.666667
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/mobilenetv2.py
'''MobileNetV2 in PyTorch. See the paper "Inverted Residuals and Linear Bottlenecks: Mobile Networks for Classification, Detection and Segmentation" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class Block(nn.Module): '''expand + depthwise + pointwise''' def __init...
3,092
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/vgg.py
'''VGG11/13/16/19 in Pytorch.''' import torch import torch.nn as nn cfg = { 'VGG11': [64, 'M', 128, 'M', 256, 256, 'M', 512, 512, 'M', 512, 512, 'M'], 'VGG13': [64, 64, 'M', 128, 128, 'M', 256, 256, 'M', 512, 512, 'M', 512, 512, 'M'], 'VGG16': [64, 64, 'M', 128, 128, 'M', 256, 256, 256, 'M', 512, 512, 512...
1,442
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/densenet.py
'''DenseNet in PyTorch.''' import math import torch import torch.nn as nn import torch.nn.functional as F class Bottleneck(nn.Module): def __init__(self, in_planes, growth_rate): super(Bottleneck, self).__init__() self.bn1 = nn.BatchNorm2d(in_planes) self.conv1 = nn.Conv2d(in_planes, 4*gr...
3,542
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CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/preact_resnet.py
'''Pre-activation ResNet in PyTorch. Reference: [1] Kaiming He, Xiangyu Zhang, Shaoqing Ren, Jian Sun Identity Mappings in Deep Residual Networks. arXiv:1603.05027 ''' import torch import torch.nn as nn import torch.nn.functional as F class PreActBlock(nn.Module): '''Pre-activation version of the BasicBlock....
4,078
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/googlenet.py
'''GoogLeNet with PyTorch.''' import torch import torch.nn as nn import torch.nn.functional as F class Inception(nn.Module): def __init__(self, in_planes, n1x1, n3x3red, n3x3, n5x5red, n5x5, pool_planes): super(Inception, self).__init__() # 1x1 conv branch self.b1 = nn.Sequential( ...
3,221
28.833333
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/resnext.py
'''ResNeXt in PyTorch. See the paper "Aggregated Residual Transformations for Deep Neural Networks" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class Block(nn.Module): '''Grouped convolution block.''' expansion = 2 def __init__(self, in_planes, cardinality=32...
3,478
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129
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/senet.py
'''SENet in PyTorch. SENet is the winner of ImageNet-2017. The paper is not released yet. ''' import torch import torch.nn as nn import torch.nn.functional as F class BasicBlock(nn.Module): def __init__(self, in_planes, planes, stride=1): super(BasicBlock, self).__init__() self.conv1 = nn.Conv2d(...
4,027
32.016393
102
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/shufflenet.py
'''ShuffleNet in PyTorch. See the paper "ShuffleNet: An Extremely Efficient Convolutional Neural Network for Mobile Devices" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class ShuffleBlock(nn.Module): def __init__(self, groups): super(ShuffleBlock, self).__init...
3,542
31.209091
126
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/lenet.py
'''LeNet in PyTorch.''' import torch.nn as nn import torch.nn.functional as F class LeNet(nn.Module): def __init__(self): super(LeNet, self).__init__() self.conv1 = nn.Conv2d(3, 6, 5) self.conv2 = nn.Conv2d(6, 16, 5) self.fc1 = nn.Linear(16*5*5, 120) self.fc2 = nn.Linear...
699
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/__init__.py
from .vgg import * from .dpn import * from .lenet import * from .senet import * from .pnasnet import * from .densenet import * from .googlenet import * from .shufflenet import * from .shufflenetv2 import * from .resnet import * from .resnext import * from .preact_resnet import * from .mobilenet import * from .mobilenet...
428
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py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/mobilenet.py
'''MobileNet in PyTorch. See the paper "MobileNets: Efficient Convolutional Neural Networks for Mobile Vision Applications" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class Block(nn.Module): '''Depthwise conv + Pointwise conv''' def __init__(self, in_planes, out_...
2,025
31.677419
123
py
CorgiPile-PyTorch
CorgiPile-PyTorch-main/cifar_dl_bench/models/dpn.py
'''Dual Path Networks in PyTorch.''' import torch import torch.nn as nn import torch.nn.functional as F class Bottleneck(nn.Module): def __init__(self, last_planes, in_planes, out_planes, dense_depth, stride, first_layer): super(Bottleneck, self).__init__() self.out_planes = out_planes sel...
3,562
34.989899
116
py
Network-Analysis-Tool
Network-Analysis-Tool-main/Analysis Tool/Edge_Analysis.py
# -*- coding: utf-8 -*- """ Created on Thu May 26 12:29:37 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd import networkx as nx node_path = 'C:/Python_Programs/Fai_ER_Project/Example Networks/Neuromuscular Junction/nodes.xls'#excel f...
24,246
53.122768
351
py
Network-Analysis-Tool
Network-Analysis-Tool-main/Analysis Tool/Node_Analysis.py
# -*- coding: utf-8 -*- """ Created on Wed Jul 6 12:27:50 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd node_path = 'C:/Python_Programs/Fai_ER_Project/Example Networks/Neuromuscular Junction/nodes.xls'#excel file conatining x y coo...
7,948
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py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Edge_Analysis_Unweighted.py
# -*- coding: utf-8 -*- """ Created on Thu May 26 12:29:37 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd import networkx as nx save_data = True #if true, program will run analysis on network and save MFPT data as excel file to save_d...
24,719
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py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Node_Analysis_Weighted_GMFPT.py
# -*- coding: utf-8 -*- """ Created on Wed Jul 6 12:27:50 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd from scipy.linalg import eig save_data = True #if true, program will run analysis on network and save MFPT data as excel file to...
8,841
56.79085
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py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Edge_Analysis_Weighted_GMFPT.py
# -*- coding: utf-8 -*- """ Created on Thu May 26 12:29:37 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd import networkx as nx from scipy.linalg import eig save_data = True #if true, program will run analysis on network and save MFP...
26,225
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py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Edge_Time_Series_Generator.py
# -*- coding: utf-8 -*- """ Created on Thu May 26 12:29:37 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd import networkx as nx import os save_data = False #if true, program will run analysis on network and save MFPT data as excel fil...
25,329
50.48374
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py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Node_Analysis_original.py
# -*- coding: utf-8 -*- """ Created on Wed Jul 6 12:27:50 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd save_data = True #if true, program will run analysis on network and save MFPT data as excel file to save_data_path. if False, pro...
8,423
56.69863
351
py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Node_Stationary_Dist.py
# -*- coding: utf-8 -*- """ Created on Wed Jul 6 12:27:50 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt import pandas as pd from scipy.linalg import eig save_data = False #if true, program will run analysis on network and save MFPT data as excel file to save_data_path. if F...
8,165
57.748201
352
py
Network-Analysis-Tool
Network-Analysis-Tool-main/Peer Revision Code/Critical_Edge_Map.py
# -*- coding: utf-8 -*- """ Created on Thu May 26 12:29:37 2022 @author: Owner """ import math import numpy as np import matplotlib.pyplot as plt from tqdm import tqdm import pandas as pd import networkx as nx save_data = False #if true, program will run analysis on network and save MFPT data as excel file to save...
23,925
53.253968
352
py
linux-sgx
linux-sgx-master/external/CppMicroServices/fixcoveragefilepaths.py
# The Cobertura report generated by OpenCooCpverage tool has file paths relative # to the drive and in case-insensitive format. This script converts the file # paths to be relative to the build directory and case-sensitive, which is # required for uploading reports to codecov.io import xml.etree.ElementTree as xml imp...
2,984
39.890411
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py
linux-sgx
linux-sgx-master/external/CppMicroServices/conf.py
# -*- coding: utf-8 -*- # # CppMicroServices documentation build configuration file, created by # sphinx-quickstart on Mon Nov 28 18:59:28 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated fi...
13,068
30.567633
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py
linux-sgx
linux-sgx-master/external/CppMicroServices/doc/cmake.py
# Distributed under the OSI-approved BSD 3-Clause License. See accompanying # file Copyright.txt or https://cmake.org/licensing for details. import os import re # Monkey patch for pygments reporting an error when generator expressions are # used. # https://bitbucket.org/birkenfeld/pygments-main/issue/942/cmake-gener...
15,086
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py
linux-sgx
linux-sgx-master/linux/installer/common/gen_source/copy_source.py
#!/usr/bin/env python # # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # no...
4,358
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py
linux-sgx
linux-sgx-master/linux/installer/common/gen_source/gen_source.py
#!/usr/bin/env python # # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # no...
7,691
33.80543
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py
linux-sgx
linux-sgx-master/build-scripts/sgx-asm-pp.py
#!/usr/bin/env python # # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # no...
15,081
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py
linux-sgx
linux-sgx-master/sdk/debugger_interface/linux/gdb-sgx-plugin/printers.py
#===----------------------------------------------------------------------===## # # Part of the LLVM Project, under the Apache License v2.0 with LLVM Exceptions. # See https://llvm.org/LICENSE.txt for license information. # SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception # #===----------------------------------...
34,881
32.508165
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py
linux-sgx
linux-sgx-master/sdk/debugger_interface/linux/gdb-sgx-plugin/load_symbol_cmd.py
# # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # notice, this list of con...
5,954
43.440299
129
py
linux-sgx
linux-sgx-master/sdk/debugger_interface/linux/gdb-sgx-plugin/sgx_emmt.py
# # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # notice, this list of con...
3,243
33.510638
76
py
linux-sgx
linux-sgx-master/sdk/debugger_interface/linux/gdb-sgx-plugin/readelf.py
# # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # notice, this list of con...
2,183
42.68
71
py
linux-sgx
linux-sgx-master/sdk/debugger_interface/linux/gdb-sgx-plugin/gdb_sgx_plugin.py
# # Copyright (C) 2011-2021 Intel Corporation. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # * Redistributions of source code must retain the above copyright # notice, this list of con...
28,864
38.758953
192
py
SBM-Transformer
SBM-Transformer-main/datasets/retrieval.py
import sys sys.path.append("./long-range-arena/lra_benchmarks/matching/") import input_pipeline import numpy as np import pickle train_ds, eval_ds, test_ds, encoder = input_pipeline.get_matching_datasets( n_devices = 1, task_name = None, data_dir = "./lra_release/lra_release/tsv_data/", batch_size = 1, fixed_v...
1,023
41.666667
103
py
SBM-Transformer
SBM-Transformer-main/datasets/pathfinder.py
import numpy as np import os import pickle import tensorflow as tf import random root_dir = "./lra_release/lra_release/" subdir = "pathfinder32" for diff_level in ["curv_baseline", "curv_contour_length_9", "curv_contour_length_14"]: data_dir = os.path.join(root_dir, subdir, diff_level) metadata_list = [ ...
1,684
34.851064
97
py
SBM-Transformer
SBM-Transformer-main/datasets/text.py
import sys sys.path.append("./long-range-arena/lra_benchmarks/text_classification/") import input_pipeline import numpy as np import pickle train_ds, eval_ds, test_ds, encoder = input_pipeline.get_tc_datasets( n_devices = 1, task_name = "imdb_reviews", data_dir = None, batch_size = 1, fixed_vocab = None, max_l...
846
37.5
102
py
SBM-Transformer
SBM-Transformer-main/datasets/cifar10.py
import sys sys.path.append("./long-range-arena/lra_benchmarks/image/") import input_pipeline import numpy as np import pickle train_ds, eval_ds, test_ds, num_classes, vocab_size, input_shape = input_pipeline.get_cifar10_datasets( n_devices = 1, batch_size = 1, normalize = False) mapping = {"train":train_ds, "dev"...
818
33.125
103
py
SBM-Transformer
SBM-Transformer-main/datasets/listops.py
import sys sys.path.append("./long-range-arena/lra_benchmarks/listops/") import input_pipeline import numpy as np import pickle train_ds, eval_ds, test_ds, encoder = input_pipeline.get_datasets( n_devices = 1, task_name = "basic", data_dir = "./lra_release/lra_release/listops-1000/", batch_size = 1, max_length...
837
37.090909
102
py
SBM-Transformer
SBM-Transformer-main/code/model_wrapper.py
import torch import torch.nn as nn import math from model import Model def pooling(inp, mode): if mode == "CLS": pooled = inp[:, 0, :] elif mode == "MEAN": pooled = inp.mean(dim = 1) else: raise Exception() return pooled def append_cls(inp, mask, vocab_size): batch_size = i...
4,761
35.630769
119
py
SBM-Transformer
SBM-Transformer-main/code/attention_sbm.py
import torch import torch.nn as nn import math import json import torch.nn.functional as F from torch.utils.checkpoint import checkpoint from fastRG import fastRG from STE import * import time from dgl.nn.functional import edge_softmax import dgl.function as fn import dgl.ops as DF import dgl @torch.no_grad() def blo...
4,000
33.791304
139
py
SBM-Transformer
SBM-Transformer-main/code/attention_linformer.py
import torch import torch.nn as nn import math class LinformerAttention(nn.Module): projection_matrix = None def __init__(self, config): super().__init__() self.num_head = config["num_head"] self.head_dim = config["head_dim"] self.linformer_k = config["linformer_k"] se...
1,203
30.684211
124
py
SBM-Transformer
SBM-Transformer-main/code/attention_nystrom.py
import torch import torch.nn as nn import math class NystromAttention(nn.Module): def __init__(self, config): super().__init__() self.head_dim = config["head_dim"] self.num_head = config["num_head"] self.num_landmarks = config["num_landmarks"] self.seq_len = config["max_se...
2,845
42.784615
145
py
SBM-Transformer
SBM-Transformer-main/code/model.py
import torch import torch.nn as nn import numpy as np import math from torch.utils.checkpoint import checkpoint from attention import Attention class Embeddings(nn.Module): def __init__(self, config): super().__init__() assert config["embedding_dim"] == config["transformer_dim"] self.dim ...
4,326
33.070866
122
py
SBM-Transformer
SBM-Transformer-main/code/dataset.py
import torch import torch.nn as nn import math from torch.utils.data.dataset import Dataset import sys import os import random import json import pickle import numpy as np class LRADataset(Dataset): def __init__(self, file_path, endless): self.endless = endless with open(file_path, "rb") as f: ...
1,513
29.28
89
py
SBM-Transformer
SBM-Transformer-main/code/attention_performer.py
import torch import torch.nn as nn import math from performer_pytorch import FastAttention class PerformerAttention(nn.Module): def __init__(self, config): super().__init__() self.head_dim = config["head_dim"] self.rp_dim = config["rp_dim"] self.kernel_type = config["kernel_type"] ...
1,003
39.16
133
py
SBM-Transformer
SBM-Transformer-main/code/lra_config.py
config = { "listops":{ "dataset":{ "train":96000, "dev":2000, "test":2000, }, "model":{ "learn_pos_emb":True, "tied_weights":False, "embedding_dim":64, "transformer_dim":64, "transformer_hidden_di...
10,876
36.898955
109
py
SBM-Transformer
SBM-Transformer-main/code/fastRG.py
import torch import numpy as np import time import torch.nn.functional as F from torch import LongTensor, Tensor from typing import Generator, Iterable, List, Optional, Tuple @torch.no_grad() def batched_bincount(inp: Tensor, max_num: int): batch_shape, num_samples = inp.shape[:-1], inp.shape[-1] num_batc...
5,974
34.147059
145
py
SBM-Transformer
SBM-Transformer-main/code/attention_linear.py
import torch import torch.nn as nn import math class LinearAttention(nn.Module): def __init__(self, config): super().__init__() def forward(self, Q, K, V, mask): Q = (nn.functional.elu(Q) + 1) / math.sqrt(math.sqrt(Q.size(2))) K = (nn.functional.elu(K) + 1) * mask[:, None, :, None] / ...
483
25.888889
97
py
SBM-Transformer
SBM-Transformer-main/code/STE.py
import torch import torch.nn as nn import torch.nn.functional as F class SampleGraphSparseGraph(torch.autograd.Function): @staticmethod def forward(ctx, input): A = torch.bernoulli(torch.clamp(input+0.01, min=0, max=1)).requires_grad_(True) ctx.save_for_backward(A) return A ...
424
29.357143
87
py
SBM-Transformer
SBM-Transformer-main/code/attention_reformer.py
import torch import torch.nn as nn from reformer_pytorch import LSHSelfAttention class LSHAttention(LSHSelfAttention): def __init__(self, config, query, key, value): self.num_hash = config["num_hash"] self.attention_head_size = config["head_dim"] self.num_attention_heads = config["num_head"...
730
33.809524
58
py
SBM-Transformer
SBM-Transformer-main/code/attention.py
import torch import torch.nn as nn import math import json from torch.utils.checkpoint import checkpoint class SoftmaxAttention(nn.Module): def __init__(self, config): super().__init__() self.drop_attn = torch.nn.Dropout(p = config["attention_dropout"]) self.head_dim = config["head_dim"] ...
4,387
35.87395
109
py
SBM-Transformer
SBM-Transformer-main/code/run_tasks.py
from model_wrapper import ModelForSC, ModelForSCDual from dataset import LRADataset from torch.utils.data import DataLoader import torch import torch.nn as nn import torch.nn.functional as F import datetime import time import os import json import requests import pickle import numpy as np import argparse import math im...
9,630
35.900383
212
py
cymetric
cymetric-main/setup.py
import setuptools with open("README.md", "r") as fh: LONG_DESCRIPTION = fh.read() with open("VERSION", "r") as fh: VERSION = fh.read() with open("requirements.txt", "r") as fh: REQUIREMENTS = fh.read().splitlines() setuptools.setup( name="cymetric", version=VERSION, author="Fabian Ruehle, Ro...
1,032
32.322581
75
py
cymetric
cymetric-main/__init__.py
0
0
0
py
cymetric
cymetric-main/tests/test_tfmodels.py
""" Pytest for some tensorflow models. Requires that `test_pointgen.py` has been run before. """ import pytest import numpy as np import os as os #import pickle as pickle import itertools as it import tensorflow as tf tfk = tf.keras #TODO: Import all metrics and Measures and callbacks and ... then run them. from cyme...
3,581
33.442308
80
py
cymetric
cymetric-main/tests/test_pointgen.py
""" Pytest for some PointGenerators. """ import numpy as np import os as os from cymetric.pointgen.pointgen import PointGenerator from cymetric.pointgen.pointgen_cicy import CICYPointGenerator from cymetric.pointgen.nphelper import generate_monomials import itertools as it #TODO: Test every non private function. class...
4,529
35.532258
78
py
cymetric
cymetric-main/tests/test_pointgen_cicy.py
import numpy as np from cymetric.pointgen.pointgen_cicy import CICYPointGenerator def cicy_init(): monomials = np.array(list(generate_monomials(6, 3))) monomials_per_hyper = [monomials, monomials] coeff = [np.random.randn(len(m)) for m in monomials_per_hyper] kmoduli = np.ones(1) ambient = np.arr...
416
28.785714
73
py