repo
stringlengths
2
99
file
stringlengths
13
225
code
stringlengths
0
18.3M
file_length
int64
0
18.3M
avg_line_length
float64
0
1.36M
max_line_length
int64
0
4.26M
extension_type
stringclasses
1 value
LSMOL
LSMOL-main/tools/ssl_methods/lost.py
0
0
0
py
LSMOL
LSMOL-main/tools/prepare_data/waymo2range.py
import os import math import numpy as np from PIL import Image import argparse import multiprocessing import tensorflow.compat.v1 as tf from waymo_open_dataset.utils import frame_utils from waymo_open_dataset import dataset_pb2 as open_dataset from waymo_open_dataset import dataset_pb2 tf.enable_eager_execution() de...
5,419
39.447761
126
py
LSMOL
LSMOL-main/tools/prepare_data/waymo2box_gt.py
import tensorflow.compat.v1 as tf import matplotlib matplotlib.use('Agg') import multiprocessing from waymo_open_dataset import dataset_pb2 as open_dataset import argparse from pathlib import Path import cv2 import json from glob import glob import os WAYMO_CLASSES = ['unknown', 'vehicle', 'pedestrian', 'sign', 'cycli...
4,232
39.314286
154
py
LSMOL
LSMOL-main/tools/prepare_data/waymo2sceneflow.py
import os import tensorflow.compat.v1 as tf import numpy as np import argparse import multiprocessing tf.enable_eager_execution() from waymo_open_dataset.utils import frame_utils from waymo_open_dataset import dataset_pb2 as open_dataset from waymo_open_dataset import dataset_pb2 from waymo2point_noground import filt...
5,069
47.75
157
py
LSMOL
LSMOL-main/tools/prepare_data/waymo2coco_class.py
import tensorflow.compat.v1 as tf from waymo_open_dataset import dataset_pb2 as open_dataset import argparse from pathlib import Path import cv2 import json from glob import glob import os import argparse WAYMO_CLASSES = ['unknown', 'vehicle', 'pedestrian', 'sign', 'cyclist'] def get_camera_labels(frame): if fram...
5,302
47.209091
160
py
LSMOL
LSMOL-main/tools/prepare_data/waymo2coco.py
import tensorflow.compat.v1 as tf from waymo_open_dataset import dataset_pb2 as open_dataset import argparse from pathlib import Path import cv2 import json from glob import glob import os import argparse WAYMO_CLASSES = ['unknown', 'vehicle', 'pedestrian', 'sign', 'cyclist'] def get_camera_labels(frame): if fram...
4,552
44.079208
160
py
LSMOL
LSMOL-main/tools/prepare_data/waymo2point_noground.py
import os import tensorflow.compat.v1 as tf import numpy as np import multiprocessing import argparse tf.enable_eager_execution() from waymo_open_dataset.utils import range_image_utils from waymo_open_dataset.utils import transform_utils from waymo_open_dataset.utils import frame_utils from waymo_open_dataset import ...
6,092
42.212766
140
py
LSMOL
LSMOL-main/tools/generate_annos/generate_2d_anno.py
import os import numpy as np import json import argparse WAYMO_CLASSES = ['unknown', 'object'] def main(root,box_name,min_objects,save_json_path): segs = sorted(os.listdir(root)) global_id = 0 object_id = 0 images = [] annotations = [] categories = [{'id': i, 'name': n} for i, n in enumerate...
2,892
44.920635
151
py
LSMOL
LSMOL-main/tools/initial_seg/proposals2mask.py
0
0
0
py
LSMOL
LSMOL-main/tools/initial_seg/range2proposals.py
import sys sys.path.append('../../third_party/depth_clustering/lib') import segment from PIL import Image import numpy as np import os import argparse def read_data(calib_path,range_path,img_path,imgs,ranges,idx): with open(calib_path, "r") as f: data = f.read() depth_path = os.path.join(range_path,r...
1,817
35.36
107
py
LSMOL
LSMOL-main/tools/initial_seg/proposals2bbox_pred_flow.py
0
0
0
py
LSMOL
LSMOL-main/tools/initial_seg/proposals2bbox_gt_flow.py
import os import numpy as np import json from sklearn import preprocessing from scipy import stats import hdbscan import multiprocessing import argparse def generate_bbox(point_obj,enlarge_pixel = 2): x_min,x_max = max(0,int(point_obj[:,0].min())-enlarge_pixel),min(int(point_obj[:,0].max())+enlarge_pixel,1919) ...
7,724
42.156425
166
py
LSMOL
LSMOL-main/evaluation/generate_3d_instance_gt.py
import torch import pickle import os import numpy as np from PIL import Image from mmdet3d.core.bbox import CameraInstance3DBoxes,get_box_type def main(): # change the path to your own path pickle_data_path = '/data/waymo_root/kitti_format/waymo_infos_val.pkl' root = '/data/waymo_root/kitti_format' f...
2,020
30.578125
111
py
LSMOL
LSMOL-main/evaluation/eval_3d_instance.py
import torch import pickle import os import cv2 import numpy as np from PIL import Image from mmdet3d.core.bbox import CameraInstance3DBoxes,get_box_type from matplotlib import pyplot as plt import matplotlib.patches as patches from scipy import stats def calculate_PR(class_tp, class_fp, class_score, class_gt_num): ...
7,685
31.987124
123
py
LSMOL
LSMOL-main/third_party/nspf/optimization.py
"""optimize over a network structure.""" import argparse import logging import os import copy import matplotlib.pyplot as plt import numpy as np import open3d as o3d import pandas as pd import torch from torch.utils.data import DataLoader from tqdm import tqdm from model import Neural_Prior import config from data i...
10,110
33.158784
122
py
LSMOL
LSMOL-main/third_party/nspf/loss.py
# code mostly copied from pytorch3d from typing import Union import torch import torch.nn.functional as F from pytorch3d.ops.knn import knn_gather, knn_points from pytorch3d.structures.pointclouds import Pointclouds def _validate_chamfer_reduction_inputs( batch_reduction: Union[str, None], point_reduction: str )...
8,316
36.295964
88
py
LSMOL
LSMOL-main/third_party/nspf/utils.py
from __future__ import absolute_import from __future__ import division from __future__ import print_function from __future__ import unicode_literals import torch import time from collections import defaultdict # ANCHOR: metrics computation, follow FlowNet3D metrics.... def scene_flow_metrics(pred, labels): l2_no...
4,540
29.273333
94
py
LSMOL
LSMOL-main/third_party/nspf/model.py
import torch class Neural_Prior(torch.nn.Module): def __init__(self, dim_x=3, filter_size=128, act_fn='relu', layer_size=8): super().__init__() self.layer_size = layer_size self.nn_layers = torch.nn.ModuleList([]) # input layer (default: xyz -> 128) if layer_si...
1,322
36.8
101
py
LSMOL
LSMOL-main/third_party/nspf/data.py
#!/usr/bin/env python # -*- coding: utf-8 -*- import glob import numpy as np from torch.utils.data import Dataset class FlyingThings3D(Dataset): def __init__(self, options, partition='test'): self.options = options self.partition = partition if self.partition == 'train': self....
16,165
39.720403
123
py
LSMOL
LSMOL-main/third_party/nspf/config.py
import argparse import os import numpy as np import torch def str2bool(v): if v.lower() in ('yes', 'true', 't', 'y', '1'): return True elif v.lower() in ('no', 'false', 'f', 'n', '0'): return False else: raise argparse.ArgumentTypeError('Boolean value expected.') def init_dirs(o...
4,058
60.5
129
py
LSMOL
LSMOL-main/third_party/nspf/visualize.py
import matplotlib.pyplot as plt import numpy as np import open3d as o3d # NOTE: need to comment this line if do not have GUI. # from mayavi import mlab from collections import namedtuple from itertools import accumulate from typing import Optional, Tuple from matplotlib.ticker import AutoMinorLocator DEFAULT_TRANSITI...
12,264
41.003425
183
py
LSMOL
LSMOL-main/third_party/nspf/process/preprocess_sf_nuscenes.py
import os from dataclasses import dataclass from pathlib import Path import numpy as np import open3d as o3d from argoverse.utils.cuboid_interior import (filter_point_cloud_to_bbox_3D_vectorized) from argoverse.utils.se3 import SE3 from argoverse.utils.transform import quat2rotmat from torch.utils.data import Dataset ...
22,943
38.020408
141
py
LSMOL
LSMOL-main/third_party/nspf/process/preprocess_sf_waymo.py
import numpy as np import os import argparse def main(waymo_root): segs = sorted(os.listdir(waymo_root)) for seg in segs: path = os.path.join(waymo_root,seg,'PC_ng') files = sorted(os.listdir(path)) output_dir = os.path.join(waymo_root,seg,'point') os.makedirs(output_dir,exist_...
1,610
38.292683
126
py
LSMOL
LSMOL-main/third_party/nspf/process/preprocess_sf_argoverse.py
import copy import glob from dataclasses import dataclass from pathlib import Path from typing import List, Optional import argoverse.data_loading.object_label_record as object_label import numpy as np import open3d as o3d from argoverse.map_representation.map_api import ArgoverseMap from argoverse.utils.cuboid_interi...
11,330
40.811808
160
py
LSMOL
LSMOL-main/third_party/nspf/scripts/train_all.py
import os waymo_lsmol_root = '/data/yuqi_wang/waymo_v1.2/waymo_lsmol' segs = sorted(os.listdir(waymo_lsmol_root)) for i in range(len(segs)): name = segs[i] runfile = os.path.join(waymo_lsmol_root,name,'sceneflow_nsfp') if os.path.exists(runfile): print('skip') continue else: os....
400
32.416667
91
py
LSMOL
LSMOL-main/model_training/train_det_2d_class.py
import logging import os from collections import OrderedDict import torch import detectron2.utils.comm as comm from detectron2.checkpoint import DetectionCheckpointer from detectron2.config import get_cfg from detectron2.data import MetadataCatalog from detectron2.data import DatasetCatalog from detectron2.data.datase...
5,795
35.917197
154
py
LSMOL
LSMOL-main/model_training/train_det_2d.py
import logging import os from collections import OrderedDict import torch import detectron2.utils.comm as comm from detectron2.checkpoint import DetectionCheckpointer from detectron2.config import get_cfg from detectron2.data import MetadataCatalog from detectron2.data import DatasetCatalog from detectron2.data.datase...
5,880
35.987421
152
py
LSMOL
LSMOL-main/model_training/train_cluster_3d.py
0
0
0
py
SSKD
SSKD-master/teacher.py
import os import os.path as osp import argparse import time import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import torch.optim as optim from torch.optim.lr_scheduler import MultiStepLR from torch.utils.data import DataLoader import torchvision.transforms as transforms from torchv...
5,112
34.020548
110
py
SSKD
SSKD-master/student.py
import os import os.path as osp import argparse import time import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import torch.optim as optim from torch.optim.lr_scheduler import MultiStepLR from torch.utils.data import DataLoader import torchvision.transforms as transforms from tensor...
14,139
38.830986
123
py
SSKD
SSKD-master/wrapper.py
import torch import torch.nn as nn import torch.nn.functional as F class wrapper(nn.Module): def __init__(self, module): super(wrapper, self).__init__() self.backbone = module feat_dim = list(module.children())[-1].in_features self.proj_head = nn.Sequential( nn.Linear...
702
24.107143
58
py
SSKD
SSKD-master/utils.py
import os import logging import numpy as np import torch from torch.nn import init class AverageMeter(object): """Computes and stores the average and current value""" def __init__(self): self.reset() def reset(self): self.count = 0 self.sum = 0.0 self.val = 0.0 sel...
1,010
21.977273
69
py
SSKD
SSKD-master/cifar.py
from __future__ import print_function from PIL import Image import os import os.path import numpy as np import sys import pickle import torch import torch.utils.data as data from itertools import permutations class VisionDataset(data.Dataset): _repr_indent = 4 def __init__(self, root, transforms=None, trans...
7,139
31.752294
86
py
SSKD
SSKD-master/models/resnet.py
from __future__ import absolute_import '''Resnet for cifar dataset. Ported form https://github.com/facebook/fb.resnet.torch and https://github.com/pytorch/vision/blob/master/torchvision/models/resnet.py (c) YANG, Wei ''' import torch.nn as nn import torch.nn.functional as F import math __all__ = ['resnet'] def con...
8,021
29.044944
116
py
SSKD
SSKD-master/models/mobilenetv2.py
""" MobileNetV2 implementation used in <Knowledge Distillation via Route Constrained Optimization> """ import torch import torch.nn as nn import math __all__ = ['mobilenetv2_T_w', 'mobile_half'] BN = None def conv_bn(inp, oup, stride): return nn.Sequential( nn.Conv2d(inp, oup, 3, stride, 1, bias=False)...
5,777
27.323529
115
py
SSKD
SSKD-master/models/vgg.py
'''VGG for CIFAR10. FC layers are removed. (c) YANG, Wei ''' import torch.nn as nn import torch.nn.functional as F import math __all__ = [ 'VGG', 'vgg11', 'vgg11_bn', 'vgg13', 'vgg13_bn', 'vgg16', 'vgg16_bn', 'vgg19_bn', 'vgg19', ] model_urls = { 'vgg11': 'https://download.pytorch.org/models/vgg11-bbd30...
6,971
28.417722
98
py
SSKD
SSKD-master/models/classifier.py
from __future__ import print_function import torch.nn as nn ######################################### # ===== Classifiers ===== # ######################################### class LinearClassifier(nn.Module): def __init__(self, dim_in, n_label=10): super(LinearClassifier, self).__init__() self.n...
819
21.777778
51
py
SSKD
SSKD-master/models/resnetv2.py
'''ResNet in PyTorch. For Pre-activation ResNet, see 'preact_resnet.py'. Reference: [1] Kaiming He, Xiangyu Zhang, Shaoqing Ren, Jian Sun Deep Residual Learning for Image Recognition. arXiv:1512.03385 ''' import torch import torch.nn as nn import torch.nn.functional as F class BasicBlock(nn.Module): expansion...
6,915
33.753769
106
py
SSKD
SSKD-master/models/ShuffleNetv1.py
'''ShuffleNet in PyTorch. See the paper "ShuffleNet: An Extremely Efficient Convolutional Neural Network for Mobile Devices" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class ShuffleBlock(nn.Module): def __init__(self, groups): super(ShuffleBlock, self).__init_...
4,732
33.05036
126
py
SSKD
SSKD-master/models/util.py
from __future__ import print_function import torch.nn as nn import math class Paraphraser(nn.Module): """Paraphrasing Complex Network: Network Compression via Factor Transfer""" def __init__(self, t_shape, k=0.5, use_bn=False): super(Paraphraser, self).__init__() in_channel = t_shape[1] ...
9,622
32.068729
107
py
SSKD
SSKD-master/models/ShuffleNetv2.py
'''ShuffleNetV2 in PyTorch. See the paper "ShuffleNet V2: Practical Guidelines for Efficient CNN Architecture Design" for more details. ''' import torch import torch.nn as nn import torch.nn.functional as F class ShuffleBlock(nn.Module): def __init__(self, groups=2): super(ShuffleBlock, self).__init__() ...
7,074
32.530806
107
py
SSKD
SSKD-master/models/__init__.py
from .resnet import resnet8, resnet14, resnet20, resnet32, resnet44, resnet56, resnet110, resnet8x4, resnet32x4, resnet14x05, resnet20x05, resnet20x0375 from .resnetv2 import ResNet50 from .wrn import wrn_16_1, wrn_16_2, wrn_40_1, wrn_40_2 from .vgg import vgg19_bn, vgg16_bn, vgg13_bn, vgg11_bn, vgg8_bn from .mobilenet...
1,103
29.666667
152
py
SSKD
SSKD-master/models/wrn.py
import math import torch import torch.nn as nn import torch.nn.functional as F """ Original Author: Wei Yang """ __all__ = ['wrn'] class BasicBlock(nn.Module): def __init__(self, in_planes, out_planes, stride, dropRate=0.0): super(BasicBlock, self).__init__() self.bn1 = nn.BatchNorm2d(in_planes)...
5,519
31.280702
116
py
cltl-backend-naoqi
cltl-backend-naoqi-main/setup.py
from setuptools import setup, find_packages with open("README.md", "r") as fh: long_description = fh.read() with open("VERSION", "r") as fh: version = fh.read().strip() setup( name='cltl.backend-naoqi', version=version, package_dir={'': 'src'}, packages=find_packages(where='src'), data_fi...
1,036
27.805556
60
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/__init__.py
0
0
0
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/__main__.py
from cltl.naoqi import app if __name__ == '__main__': app.main()
70
13.2
26
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/tts_output.py
from __future__ import unicode_literals import logging from cltl.naoqi.spi.text import TextOutput logger = logging.getLogger(__name__) class NAOqiTextToSpeech(TextOutput): """ NAOqi Text to Speech Parameters ---------- session: qi.Session Qi Application Session. speed: int ...
1,108
23.644444
111
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/audio_source.py
import enum import logging import uuid import numpy as np from Queue import Queue, Full, Empty from cltl.naoqi.spi.audio import AudioSource logger = logging.getLogger(__name__) def reframe(queue, frame_size, frame_duration): buffer = [] buffered = 0 while True: try: chunk = queue.ge...
6,169
24.8159
119
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/image_source.py
import enum import logging import uuid import numpy as np import qi import vision_definitions from cltl.naoqi.api.camera import Image, Bounds, CameraResolution from cltl.naoqi.spi.image import ImageSource logger = logging.getLogger(__name__) class NAOqiCameraIndex(enum.IntEnum): """ See also: http://do...
5,254
32.050314
111
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/app.py
import argparse import enum import logging import os import qi from cltl.naoqi.server import BackendServer from cltl.naoqi.api.camera import CameraResolution from cltl.naoqi.audio_source import NAOqiMicrophoneIndex logger = logging.getLogger(__name__) class Env(enum.Enum): CLTL_MIC_IDX = 0 CLTL_MIC_BUFFER ...
4,414
48.606742
148
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/server.py
import base64 import logging import flask import numpy as np from flask import Flask, Response, stream_with_context, jsonify, request from flask import g as app_context from flask.json import JSONEncoder from cltl.naoqi.api.camera import Image, Bounds from cltl.naoqi.audio_source import NAOqiMicrophone from cltl.naoq...
5,441
33.443038
112
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/behaviour.py
import logging from cltl.naoqi.spi.behaviour import BehaviourController, Behaviour logger = logging.getLogger(__name__) _NAOQI_BEHAVIOR = { Behaviour.AUTONOMOUS_VISUAL_FEEDBACK: "AutonomousBlinking" } class NAOqiBehaviourController(BehaviourController): """ NAOqi Behavior. Parameters --------...
845
23.882353
84
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/__init__.py
0
0
0
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/app_tablet.py
import argparse import logging import os import enum import qi logger = logging.getLogger(__name__) class Env(enum.Enum): CLTL_NAOQI_IP = 6 CLTL_NAOQI_PORT = 7 CLTL_PORT = 8 CLTL_LOG_LEVEL = 9 CLTL_SERVER = 9 def env_or_default(env_var, default): var = env_var.name return os.environ[v...
1,887
29.95082
112
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/spi/image.py
class ImageSource: def __enter__(self): return self def __exit__(self, exc_type, exc_val, exc_tb): pass @property def resolution(self): raise NotImplementedError() def capture(self): raise NotImplementedError()
266
18.071429
50
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/spi/audio.py
class AudioSource: def __enter__(self): return self def __exit__(self, exc_type, exc_val, exc_tb): pass def __iter__(self): return iter(self.audio) @property def audio(self): raise NotImplementedError() @property def rate(self): raise NotImplemente...
552
18.068966
50
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/spi/behaviour.py
import enum import logging logger = logging.getLogger(__name__) class Behaviour(enum.Enum): # TO BE EXTENDED AUTONOMOUS_VISUAL_FEEDBACK = 1 class BehaviourController: def start(self, behaviour): raise NotImplementedError() def stop(self, behaviour): raise NotImplementedError()
316
16.611111
36
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/spi/text.py
class TextOutput: def consume(self, text, language=None): raise NotImplementedError() def consume_stream(self, texts, language=None): for text in texts: self.consume(text) class TextSource: def __enter__(self): return self def __exit__(self, exc_type, exc_val, exc...
525
18.481481
51
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/spi/__init__.py
0
0
0
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/api/camera.py
import collections import enum import logging import numpy as np logger = logging.getLogger(__name__) class CameraResolution(enum.Enum): """ Image height and width. See also vision_definitions.kXXX constants in the Qi Framework. """ NATIVE = -1, -1 QQQQVGA = 30, 40 QQQVGA = 60, 80 Q...
1,236
19.616667
70
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/api/__init__.py
0
0
0
py
cltl-backend-naoqi
cltl-backend-naoqi-main/src/cltl/naoqi/api/microphone.py
import collections import logging logger = logging.getLogger(__name__) AUDIO_RESOURCE_NAME = "cltl.backend.api.audio" """Resource name to be shared with the speaker to mute the microphone when the speaker is active. The AbstractMicrophone holds a reader-lock on this resource. """ MIC_RESOURCE_NAME = "cltl.backend.ap...
722
33.428571
121
py
cltl-backend-naoqi
cltl-backend-naoqi-main/tests/test_naoqi_audio_source.py
import time import unittest from threading import Thread, Event import numpy as np from Queue import Queue from cltl.naoqi.audio_source import reframe, NAOqiMicrophone class DummySession: def service(self, *args): return DummyService() def registerService(self, *args): pass class DummySer...
3,008
28.792079
91
py
cltl-backend-naoqi
cltl-backend-naoqi-main/tests/test_naoqi_image_source.py
import unittest import numpy as np from cltl.naoqi.image_source import NAOqiCameraIndex, CameraResolution, NAOqiCamera class DummySession: def service(self, name): return DummyService() def registerService(self, name, cls): pass class DummyService: def hasDepthCamera(self): re...
1,365
25.269231
112
py
cltl-backend-naoqi
cltl-backend-naoqi-main/tests/test_server.py
import base64 import json import unittest import numpy as np from Queue import Queue from cltl.naoqi.api.camera import CameraResolution, Image, Bounds from cltl.naoqi.server import BackendServer from cltl.naoqi.spi.audio import AudioSource from cltl.naoqi.spi.image import ImageSource from cltl.naoqi.spi.text import T...
3,508
25.583333
132
py
cltl-backend-naoqi
cltl-backend-naoqi-main/tests/__init__.py
0
0
0
py
scirepeval
scirepeval-main/mdcr.py
import json from typing import Union, Dict import logging import os import datasets import numpy as np from tqdm import tqdm from evaluation.embeddings_generator import EmbeddingsGenerator from evaluation.encoders import Model from evaluation.eval_datasets import SimpleDataset from evaluation.evaluator import IREvalu...
2,446
40.474576
117
py
scirepeval
scirepeval-main/scirepeval.py
import argparse import json from typing import List, Union from evaluation.encoders import Model from evaluation.evaluator import IREvaluator, SupervisedEvaluator, SupervisedTask from evaluation.few_shot_evaluator import FewShotEvaluator from evaluation.gpt3_encoder import GPT3Model from evaluation.instructor import I...
7,865
52.510204
121
py
scirepeval
scirepeval-main/reviewer_matching.py
from typing import Union, Dict import logging import os import datasets import numpy as np from tqdm import tqdm from evaluation.embeddings_generator import EmbeddingsGenerator from evaluation.encoders import Model from evaluation.eval_datasets import SimpleDataset from evaluation.evaluator import IREvaluator from sk...
3,607
53.666667
120
py
scirepeval
scirepeval-main/s2and_embeddings.py
import pickle import numpy as np from evaluation.encoders import Model from evaluation.eval_datasets import SimpleDataset from evaluation.evaluator import Evaluator import argparse from tqdm import tqdm import json def read_data(file_path): task_data = json.load(open(file_path, "r")) task_data = list(task_...
2,568
44.070175
120
py
scirepeval
scirepeval-main/adapter_fusion.py
from typing import List, Optional, Union, Dict from transformers.adapters import PfeifferConfig from transformers.adapters import AutoAdapterModel from transformers.adapters.composition import Fuse from abc import ABC, abstractmethod import torch import os class AdapterFactory: @staticmethod def get_adapter(c...
4,905
44.850467
121
py
scirepeval
scirepeval-main/bert_pals.py
# coding=utf-8 # Copyright 2018 The Google AI Language Team Authors and The HugginFace Inc. team. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENS...
40,279
45.728538
120
py
scirepeval
scirepeval-main/evaluation/instructor.py
from InstructorEmbedding import INSTRUCTOR from transformers import AutoTokenizer instr_format = "Represent the Scientific documents for " class InstructorModel: def __init__(self, embed_model: str): self.encoder = INSTRUCTOR(embed_model) self.task_id = None self.instruction_map = {"[CLF]...
1,330
50.192308
117
py
scirepeval
scirepeval-main/evaluation/few_shot_evaluator.py
import math from typing import Union import numpy as np from sklearn.model_selection import StratifiedKFold import evaluation.evaluator from evaluation.encoders import Model from evaluation.evaluator import SupervisedEvaluator, SupervisedTask from tqdm import tqdm class FewShotEvaluator(SupervisedEvaluator): de...
2,522
41.762712
114
py
scirepeval
scirepeval-main/evaluation/evaluator.py
from typing import Union, Dict, Tuple import numpy as np from lightning.classification import LinearSVC from lightning.regression import LinearSVR from sklearn.metrics import f1_score, accuracy_score, precision_score, recall_score, mean_squared_error, r2_score from scipy.stats import kendalltau, pearsonr from sklearn....
10,751
45.951965
119
py
scirepeval
scirepeval-main/evaluation/embeddings_generator.py
from typing import Dict, List, Union from evaluation.encoders import Model from tqdm import tqdm import numpy as np import json import pathlib import logging logger = logging.getLogger(__name__) class EmbeddingsGenerator: def __init__(self, datasets, models: Union[Model, List[Model]]): self.datasets = d...
2,202
39.796296
106
py
scirepeval
scirepeval-main/evaluation/gpt3_encoder.py
import os import openai import torch from transformers import GPT2TokenizerFast class GPT3Model: def __init__(self, embed_model: str): openai.api_key = os.getenv("OPENAI_API_KEY") self.embed_model = embed_model self.tokenizer = GPT2TokenizerFast.from_pretrained("gpt2") def __call__(se...
1,019
31.903226
66
py
scirepeval
scirepeval-main/evaluation/encoders.py
from typing import Dict, Union, List from transformers import AutoModel, AutoTokenizer import os from bert_pals import BertPalsEncoder, BertPalConfig, BertModel from adapter_fusion import AdapterEncoder, AdapterFusion import torch import logging logger = logging.getLogger(__name__) class EncoderFactory: def __i...
6,499
48.618321
119
py
scirepeval
scirepeval-main/evaluation/eval_datasets.py
import logging import os from typing import Union, List import datasets logger = logging.getLogger(__name__) class SimpleDataset: def __init__(self, data_path: Union[str, tuple], sep_token: str, batch_size=32, fields: List = None, key: str = None, processing_fn=None): self.batch_size =...
3,071
33.909091
103
py
scirepeval
scirepeval-main/examples/classification.py
import sys sys.path.append('../') from evaluation.encoders import Model from evaluation.evaluator import SupervisedEvaluator, SupervisedTask from adapter_fusion import AdapterEncoder # default no control codes # model = Model(base_checkpoint="allenai/specter") # default control codes # model = Model(base_checkpoint...
955
37.24
130
py
scirepeval
scirepeval-main/examples/fewshot_classification.py
import sys sys.path.append('../') from evaluation.encoders import Model from evaluation.few_shot_evaluator import FewShotEvaluator, SupervisedTask # default no control codes model = Model(base_checkpoint="allenai/specter") # default control codes # model = Model(base_checkpoint="../lightning_logs/full_run/scincl_ct...
920
37.375
124
py
scirepeval
scirepeval-main/examples/retrieval.py
import sys sys.path.append('../') from evaluation.evaluator import IREvaluator from evaluation.encoders import Model from adapter_fusion import AdapterEncoder from reviewer_matching import ReviewerMatchingEvaluator # default no control codes # model = Model(base_checkpoint="allenai/specter") # default control codes ...
1,773
43.35
125
py
scirepeval
scirepeval-main/examples/regression.py
import sys sys.path.append('../') from evaluation.encoders import Model from evaluation.evaluator import SupervisedEvaluator, SupervisedTask #default no control codes model = Model(base_checkpoint="allenai/specter") #default control codes # model = Model(base_checkpoint="../lightning_logs/full_run/scincl_ctrl/check...
884
35.875
124
py
scirepeval
scirepeval-main/training/pl_training.py
import json import sys # setting path sys.path.append('../') import argparse from typing import Dict, Optional, Any import datasets import pytorch_lightning as pl import torch import torch.nn from pytorch_lightning.callbacks import ModelCheckpoint from pytorch_lightning.loggers import TensorBoardLogger from pytorch_l...
16,448
49.612308
141
py
scirepeval
scirepeval-main/training/strategies.py
import enum from abc import ABC, abstractmethod from typing import Iterable from torch.utils.data import Dataset import random class BatchWrapper(ABC): @abstractmethod def get_batch_iter(self, datasets: Iterable[Dataset], batch_size: int): pass class SequentialBatching(BatchWrapper): def get_b...
2,200
26.860759
75
py
scirepeval
scirepeval-main/training/mtl_datasets.py
import decimal from typing import Iterator, Tuple, List, Dict, Union, Any, Iterable import torch from torch.utils.data import IterableDataset, DataLoader, ChainDataset, get_worker_info from torch.utils.data.dataset import T_co, Dataset from transformers import PreTrainedTokenizer, BatchEncoding, AutoTokenizer import da...
15,001
47.083333
145
py
scirepeval
scirepeval-main/training/schedulers.py
from dataclasses import dataclass, field import torch.optim.optimizer from fairseq.dataclass import FairseqDataclass from omegaconf import II from torch.optim.optimizer import Optimizer """Code picked up from fairseq implementation and adapted to suit pytorch lightning""" @dataclass class InverseSquareRootScheduleC...
2,683
36.802817
87
py
scirepeval
scirepeval-main/training/tasks.py
from typing import Dict from torch import nn import torch import torch.nn.functional as F import json class TaskFamily: def __init__(self, name, loss, type, dataset=None, data_files=None, multi_label=False, input_fields=None, labels_field=None, labels=None, ctrl_token=None, head=None, contrastiv...
6,393
41.065789
152
py
vqg-unknown
vqg-unknown-master/test.py
from __future__ import division from __future__ import print_function from __future__ import absolute_import import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt from utils.region_extract import * from utils.utils import * from src.net import ResNet from src.net import ImageCaption import chainer ...
4,368
33.952
115
py
vqg-unknown
vqg-unknown-master/src/q_test.py
import numpy as np import chainer from chainer import cuda, Variable, serializers, functions as F from net import ImageCaption import argparse import pickle import json from tqdm import tqdm def create_data(all_data, all_features, split_type): features = [] qa_ids = [] target_vecs = [] for each_quest...
4,795
33.753623
124
py
vqg-unknown
vqg-unknown-master/src/feature_extract.py
import pickle from skimage import io from scipy.misc import imresize import chainer from chainer import Variable, cuda from chainer.links.model.vision import resnet import numpy as np import argparse from net import ResNet xp = cuda.cupy def region_resize(image, region): x, y, w, h = region aspect_list = np....
3,779
33.363636
110
py
vqg-unknown
vqg-unknown-master/src/net.py
import chainer import chainer.functions as F import chainer.links as L from chainer.links.model.vision import resnet class ResNet(chainer.Chain): def __init__(self, path, layer): super(ResNet, self).__init__() with self.init_scope(): self.resnet = resnet.ResNetLayers(path, layer) ...
1,403
33.243902
78
py
vqg-unknown
vqg-unknown-master/src/train.py
import numpy as np import chainer from chainer import cuda, Variable, optimizers, serializers, functions as F import pickle import argparse import os from net import ImageCaption from tqdm import tqdm def forward(target_vec, image_features, questions, model, eos): sentence_length = questions.shape[-1] model....
6,451
34.450549
212
py
vqg-unknown
vqg-unknown-master/src/preprocess.py
import pickle import argparse def main(args): all_data_path = args.ALL_DATA_PATH word_emb_path = args.WORD_EMB_PATH word2id_path = args.WORD2ID_PATH with open(all_data_path, 'rb') as f: all_data = pickle.load(f) with open(word2id_path, 'rb') as f: word2id = pickle.load(f) wi...
1,573
30.48
97
py
vqg-unknown
vqg-unknown-master/utils/utils.py
import chainer from chainer import cuda import chainer.functions as F from chainer.links.model.vision import resnet import numpy as np xp = cuda.cupy def extract_feature(image, model): x = resnet.prepare(image, size=None) x = chainer.Variable(xp.asarray([x], dtype=xp.float32)) with chainer.using_config('...
2,178
31.044118
124
py
vqg-unknown
vqg-unknown-master/utils/__init__.py
0
0
0
py
vqg-unknown
vqg-unknown-master/utils/region_extract.py
import itertools import numpy as np from skimage import io import cv2 import chainer from chainer import cuda, Variable import chainer.functions as F from chainer.links.model.vision import resnet import selectivesearch import pyimgsaliency as psal xp = cuda.cupy def selective_regions(image, saliency_image): # pe...
4,647
32.2
97
py
Chinese-Word-Vectors
Chinese-Word-Vectors-master/evaluation/ana_eval_dense.py
# We reuse a fraction of code in http://bitbucket.org/omerlevy/hyperwords. # Using the numpy and similarity matrix largely speed up the evaluation process, # compared with evaluation scripts in word2vec and GloVe import numpy as np import argparse import random def read_vectors(path, topn): # read top n word vector...
6,472
38.469512
122
py
Chinese-Word-Vectors
Chinese-Word-Vectors-master/evaluation/ana_eval_sparse.py
# We reuse a fraction of code in http://bitbucket.org/omerlevy/hyperwords. # Using the numpy and similarity matrix largely speed up the evaluation process, # compared with evaluation scripts in word2vec and GloVe import numpy as np import argparse import random from scipy.sparse import dok_matrix, csr_matrix def loa...
6,483
37.141176
122
py
pip
pip-main/setup.py
import os import sys from setuptools import find_packages, setup def read(rel_path: str) -> str: here = os.path.abspath(os.path.dirname(__file__)) # intentionally *not* adding an encoding option to open, See: # https://github.com/pypa/virtualenv/issues/201#issuecomment-3145690 with open(os.path.joi...
3,055
33.337079
81
py