repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1 value |
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NORPPA | NORPPA-main/datasets.py | import os
from pathlib import Path
from tools import read_image
import csv
import numpy as np
from torch.utils.data import Dataset
import os
class DatasetSlice(Dataset):
def __init__(self, dataset, slice=None):
self.dataset = dataset
self.slice = (0, len(self.dataset)) if slice is None else slice
if type(self.slice) is tuple:
self.slice = range(*self.slice)
if hasattr(dataset,'imgs'):
self.imgs = [dataset.imgs[i] for i in self.slice]
if hasattr(dataset,'classes'):
self.classes = dataset.classes
def __getitem__(self, index):
return self.dataset[self.slice[index]]
def __len__(self):
return len(self.slice)
class COCOImageDataset(Dataset):
def __init__(self,
dataset_dir,
annotation,
split):
self.split = split
self.dataset_dir = dataset_dir
self.annotation = annotation
self.data = self._get_data(split, self.annotation)
self.classes = list(self._get_classes(self.data))
def __getitem__(self, index):
img_path, pid = self.data[index]
img = read_image(img_path)
return img, {'class_id': pid, 'file': img_path}
def __len__(self):
return len(self.data)
def _get_classes(self, data):
classes = set([items[1] for items in data])
return classes
def _get_data(self, split, annotation):
""" Get database from COCO anntations """
result = []
with open(annotation, mode='r') as csv_file:
csv_reader = csv.DictReader(csv_file)
for row in csv_reader:
if (row["reid_split"] == split):
image_path = self._get_image_path(row["file"])
image_pid = row["class_id"]
result.append((image_path,image_pid))
return result
def _get_image_path(self, filename):
return os.path.join(self.dataset_dir, filename)
class SimpleDataset(Dataset):
def __init__(self,
dataset_dir):
self.dataset_dir = dataset_dir
self.data = self._get_data(dataset_dir)
self.classes = list(self._get_classes(self.data))
def __getitem__(self, index):
img_path, pid = self.data[index]
img = read_image(img_path)
return img, {'class_id': pid, 'file': img_path, 'dataset_dir':self.dataset_dir}
def __len__(self):
return len(self.data)
def _get_classes(self, data):
classes = set([items[1] for items in data])
return classes
def _get_data(self, dataset_dir):
dataset_dir = Path(dataset_dir)
result = []
for class_dir in [x for x in dataset_dir.iterdir() if x.is_dir()]:
for img in class_dir.iterdir():
result.append((str(img), class_dir.name))
return result
def get_labels(self):
labels = [items[1] for items in self.data]
return labels
class SequenceDataset(Dataset):
def __init__(self,
dataset_dir):
self.dataset_dir = dataset_dir
self.data = self._get_data(dataset_dir)
self.classes = list(self._get_classes(self.data))
def __getitem__(self, index):
img_path, pid, seq = self.data[index]
img = read_image(img_path)
return img, {'class_id': pid, 'sequence_id': seq, 'dataset_dir':self.dataset_dir, 'file':img_path}
def __len__(self):
return len(self.data)
def _get_classes(self, data):
classes = set([items[1] for items in data])
return classes
def _get_sequences(self, data):
seqs = np.unique([items[2] for items in data])
return seqs
def get_sequence_ids(self, k=None):
data = self.data
seqs = self._get_sequences(data)
counts = [0] *len(seqs)
res = []
# res = [np.where(seqs==items[2])[0][0] for items in data]
for items in data:
seq_id = np.where(seqs==items[2])[0][0]
if k is None or counts[seq_id] < k:
counts[seq_id]+=1
else:
seq_id = -1
res.append(seq_id)
return res
def get_sequence_labels(self):
data = self.data
seqs = self._get_sequences(data)
res = []
for seq in seqs:
ind = next(i for (i,x) in enumerate(data) if x[2] == seq)
res.append(data[ind][1])
return res
def get_labels(self):
labels = [items[1] for items in self.data]
return labels
def get_sequence_files(self):
data = self.data
seqs = self._get_sequences(data)
res = []
for seq in seqs:
ind = next(i for (i,x) in enumerate(data) if x[2] == seq)
res.append(data[ind][0])
return res
def get_sequence_lenghts(self):
data = self.data
seqs = self._get_sequences(data)
res = []
for seq in seqs:
ln = len(list(filter(lambda x: x[2] == seq, data)))
res.append(ln)
return res
def _get_data(self, dataset_dir):
dataset_dir = Path(dataset_dir)
result = []
for class_dir in [x for x in dataset_dir.iterdir() if x.is_dir()]:
for seq in class_dir.iterdir():
images = []
for img in seq.iterdir():
result.append((str(img), class_dir.name, seq.name))
return result
class DBDataset:
def __init__(self, seal_type, cfg):
self.ids = get_db_ids(cfg["conn"], "norppa")
self.conn = cfg["conn"]
self.cfg = cfg
self._fisher_vectors = None
self._fisher_vectors_seq = None
def get_ids(self):
return self.ids
def get_label(self, i):
return get_label(self.conn, self.ids[i])[0]
def get_label_seq(self, i):
return self._get_sequences()[i]
def get_labels(self):
result = []
for (i, el) in enumerate(self.ids):
result.append(self.get_label(i))
return result
def _get_sequences(self):
seqs = np.unique(self.get_labels())
return seqs
def get_sequence_ids(self):
data = self.ids
seqs = self._get_sequences()
res = [np.where(seqs==self.get_label(i))[0][0] for (i,item) in enumerate(data)]
return res
def get_fisher_vector(self, i):
if self._fisher_vectors is not None:
return self._fisher_vectors[i]
patch_features = get_patch_features(self.conn, self.ids[i])
encoded = fisher_single(patch_features, self.cfg)
return encoded
def get_fisher_vectors(self):
if self._fisher_vectors is None:
db_ids, db_features = get_patch_features_multiple_ids(self.conn, self.ids)
encoded = fisher_multiple(db_features, db_ids, self.cfg)
self._fisher_vectors = encoded
return self._fisher_vectors
def get_fisher_vectors_seq(self):
if self._fisher_vectors_seq is None:
db_ids, db_features = get_patch_features_multiple_ids(self.conn, self.ids)
sequence_ids = self.get_sequence_ids()
seqs = np.array(sequence_ids).squeeze()
db_ids = [seqs[self.ids.index(db_id)] for db_id in db_ids]
encoded = fisher_multiple(db_features, db_ids, self.cfg)
self._fisher_vectors_seq = encoded
return self._fisher_vectors_seq
def get_patches(self, i):
return get_patches(self.conn, i)
def get_seq_img_ids(self, seq_id):
data = self.get_sequence_ids()
ids = [i for (i,x) in enumerate(data) if x == seq_id]
res = [self.ids[ind] for ind in ids]
return res
def get_patches_seq(self, seq_id):
ids = self.get_seq_img_ids(seq_id)
return get_patches_multiple(self.conn, ids) | 8,014 | 29.708812 | 106 | py |
NORPPA | NORPPA-main/vis_new_pattern.py | import os
# import sys
# sys.path.append('/ekaterina/work/src/NORPPA/repository/NORPPA')
os.environ["CUDA_VISIBLE_DEVICES"]="1"
from config_whaleshark import config
import matplotlib.pyplot as plt
from pathlib import Path
import numpy as np
import zipfile
import tensorflow as tf
import wget
import pickle
physical_devices = tf.config.list_physical_devices('GPU')
tf.config.experimental.set_memory_growth(physical_devices[0], True)
from torchvision.datasets.utils import download_url
from datasets import SimpleDataset, DatasetSlice
from tools import *
from tonemapping.tonemapping import tonemap, tonemap_step
from segmentation.segmentation import segment
from pattern_extraction.extract_pattern import extract_pattern
from reidentification.identify import *
from reidentification.visualisation import visualise_match
from reidentification.find_matches import find_matches
import os
# import sys
# sys.path.append('/ekaterina/work/src/NORPPA/repository/NORPPA')
os.environ["CUDA_VISIBLE_DEVICES"]="1"
from config_whaleshark import config
import matplotlib.pyplot as plt
from pathlib import Path
import numpy as np
import zipfile
import tensorflow as tf
import wget
import pickle
physical_devices = tf.config.list_physical_devices('GPU')
tf.config.experimental.set_memory_growth(physical_devices[0], True)
from torchvision.datasets.utils import download_url
from datasets import SimpleDataset, DatasetSlice
from tools import apply_pipeline, crop_step, curry, apply_pipeline_dataset, get_save_step, apply_sequential, compose, compose_sequential
from tonemapping.tonemapping import tonemap, tonemap_step
from segmentation.segmentation import segment
from pattern_extraction.extract_pattern import extract_pattern
from reidentification.identify import encode_single, encode_pipeline, encode_dataset, identify, identify_single
from reidentification.visualisation import visualise_match
cfg = config()
cfg["codebooks"] = load_pickle("whaleshark_norppa_tonemapped_pattern_maxim_oldgmm_codebooks_scale1.pickle")
print("loaded codebooks")
encoded_train_dataset = load_pickle("whaleshark_norppa_tonemapped_pattern_maxim_oldgmm_encoded_scale1.pickle")
print("loaded encodings")
test_pipeline1 = [
curry(identify, encoded_train_dataset, cfg["topk"], leave_one_out=True),
curry(print_topk_accuracy, label="Before geometric verification:"),
]
test_pipeline2 = [
curry_sequential(find_matches, cfg),
curry_sequential(apply_geometric, cfg["geometric"]),
curry(print_topk_accuracy, label="After geometric verification:"),
# curry_sequential(visualise_match, cfg["topk"])
]
matches1 = apply_pipeline_dataset(encoded_train_dataset, test_pipeline1)
print("found matches 1")
save_pickle(matches1, "temp/files/new_pattern.matches1.pickle")
matches2 = apply_pipeline_dataset(matches1, test_pipeline2)
print("found matches 1")
save_pickle(matches2, "temp/files/new_pattern.matches2.pickle")
| 3,022 | 34.564706 | 136 | py |
NORPPA | NORPPA-main/config_whaleshark.py |
import sys
from pathlib import Path
import cv2
import numpy as np
file_folder = Path(__file__).resolve().parent
sys.path.append(str(file_folder / "reidentification/hesaff_pytorch"))
from HessianAffinePatches import init_affnet, init_orinet, init_hardnet
from segmentation.detectron_segment import create_predictor
from pattern_extraction.extract_pattern import create_unet
from torchvision.datasets.utils import download_url
from sql import create_connection
def init_file(path, url, allow_download=True):
if Path(path).exists():
return path
elif allow_download:
download_url(url, Path(path).parent, Path(path).name)
return path
else:
raise Exception("The file {path} is not found!")
def config(use_cuda=True, allow_download=True):
config = {}
base_dir = Path(__file__).resolve().parent
mount_path = "/ekaterina/work/data/many_dataset/"
path_db = mount_path + "DB_test.db"
config["conn"] = create_connection(path_db)
config["net"] = init_hardnet(init_file(base_dir/"models/HardNet++.pth",
"https://github.com/kwadraterry/NORPPA/raw/models/models/HardNet++.pth",
allow_download=allow_download),
use_cuda=use_cuda)
affnet = init_affnet(init_file(base_dir/"models/AffNet.pth",
"https://github.com/kwadraterry/NORPPA/raw/models/models/AffNet.pth",
allow_download=allow_download),
use_cuda=use_cuda)
orinet = init_orinet(init_file(base_dir/"models/OriNet.pth",
"https://github.com/kwadraterry/NORPPA/raw/models/models/OriNet.pth",
allow_download=allow_download),
use_cuda=use_cuda)
codebooks_path = init_file(base_dir/'codebooks/codebooks.pickle',
"https://github.com/kwadraterry/NORPPA/raw/models/codebooks/codebooks.pickle",
allow_download=allow_download)
config["codebooks_path"] = Path("/ekaterina/work/src/NORPPA/repository/NORPPA/codebooks/whaleshark_tonemapped_harrisz.pickle")
config["codebooks"] = None
config["hesaff_args"] = {'init_sigma': 1.3213713243956968,
'mrSize': 9.348280997446642,
'nlevels': 10,
'num_features': 480,
'unsharp_amount': 6.80631647207343,
'unsharp_radius': None,
'use_cuda' :use_cuda,
'patch_scale': 1}
config["detectron_predictor"] = create_predictor(init_file(base_dir/"models/R-101-FPN_150ims.pth",
"https://github.com/kwadraterry/NORPPA/raw/models/models/R-101-FPN_150ims.pth",
allow_download=allow_download),
not use_cuda)
config["unet"] = create_unet(init_file(base_dir/"models/unet_seals_512.hdf5",
"https://github.com/kwadraterry/NORPPA/raw/models/models/unet_seals_512.hdf5",
allow_download=allow_download))
config["hesaff_args"]["AffNet"] = affnet
config["hesaff_args"]["OriNet"] = orinet
config["hesaff_args"]["patch_size"] = 32
config["sift_args"] = {'patch_size': 32}
config["use_hesaff"] = False
config["patch_extraction"] = "sift"
config["pca"] = 64
config["use_kpca"] = False
config["n_clusters"] = 1400
config["features_shape"] = 64
config["topk"] = 5
config["kernel"] = "rbf"
config["use_cuda"] = use_cuda
config["dataset_dir"] = base_dir/'data'
config["batch_size"] = 256
config["geometric"] = {
"method": cv2.RANSAC,
"max_iters": 5000,
"max_reproj_err": .05,
"estimator": lambda d, mask: d ** np.sum(mask)
}
return config | 4,166 | 41.520408 | 131 | py |
NORPPA | NORPPA-main/codebooks_whaleshark.py | import os
# import sys
# sys.path.append('/ekaterina/work/src/NORPPA/repository/NORPPA')
os.environ["CUDA_VISIBLE_DEVICES"]="1"
from config_whaleshark import config
import matplotlib.pyplot as plt
from pathlib import Path
import numpy as np
import zipfile
import tensorflow as tf
import wget
import pickle
physical_devices = tf.config.list_physical_devices('GPU')
tf.config.experimental.set_memory_growth(physical_devices[0], True)
from torchvision.datasets.utils import download_url
from datasets import SimpleDataset, DatasetSlice
from tools import *
from tonemapping.tonemapping import tonemap, tonemap_step
from segmentation.segmentation import segment
from pattern_extraction.extract_pattern import extract_pattern
from reidentification.identify import encode_single, encode_pipeline, encode_dataset, identify, identify_single
from reidentification.visualisation import visualise_match
cfg = config()
train_path = "/ekaterina/work/data/whaleshark_norppa_tonemapped/train"
test_path = "/ekaterina/work/data/whaleshark_norppa/test"
dataset_train = Path(train_path)
dataset_test = Path(test_path)
train_dataset = SimpleDataset(dataset_train)
codebooks_path = '/ekaterina/work/src/NORPPA/repository/NORPPA/codebooks/whaleshark_tonemapped.pickle'
codebooks, encoded_dataset = encode_dataset(train_dataset, cfg, compute_codebooks=True)
try:
with open("tonemapped_whaleshark.pickle", 'wb') as f_file:
pickle.dump(encoded_dataset, f_file, protocol=4)
except Exception as e:
print(e)
try:
with open(codebooks_path, "wb") as codebooks_file:
pickle.dump(codebooks, codebooks_file, protocol=4)
except Exception as e:
print(e)
| 1,668 | 30.490566 | 111 | py |
NORPPA | NORPPA-main/segmentation/train_dataset.py | from pathlib import Path
import os
import pycocotools
from PIL import Image
import numpy as np
from detectron2.structures import BoxMode
def create_dataset_json(full_dir, segmented_dir, keyword="", suffix=".result.png"):
full_dir = Path(full_dir)
segmented_dir = Path(segmented_dir)
result = []
counter = 0
for root, _, files in os.walk(full_dir):
root = Path(root)
for name in files:
full_img = root / name
if keyword in str(full_img):
segmented_path = segmented_dir / (str(full_img.relative_to(full_dir))+suffix)
if not segmented_path.is_file():
continue
mask_img = Image.open(segmented_path).convert("L")
width, height = mask_img.size
bbox = mask_img.getbbox()
mask_img = (np.asarray(mask_img) > 0).astype(np.uint8)
# print(segmented_path)
# print(np.sum(mask_img))
# print(mask_img.shape[0] * mask_img.shape[1])
mask = pycocotools.mask.encode(np.asarray(mask_img, order="F"))
counter += 1
result.append({'file_name': str(full_img),
'image_id': counter,
'height': height,
'width': width,
'annotations': [
{'iscrowd': 0,
'segmentation': mask,
'bbox': bbox,
'bbox_mode': BoxMode.XYXY_ABS,
'category_id': 0 }]})
return result
| 1,616 | 34.933333 | 93 | py |
NORPPA | NORPPA-main/segmentation/segmentation.py | from segmentation.detectron_segment import detectron_segment
def add_instance_info(label, instance, num_instances):
if type(label) is dict:
label["instance"] = instance
label["num_instances"] = num_instances
return label
else:
return (label, instance)
def segment(input, predictor, instance_segmentation=False):
image, img_label = input
if image is None:
return [input]
result_images, num_instances = detectron_segment(predictor, image, instance_segmentation)
if instance_segmentation:
return [(img, add_instance_info(img_label, i, num_instances)) for img,i in enumerate(result_images)]
else:
return [(img, img_label) for img in result_images]
| 733 | 30.913043 | 108 | py |
NORPPA | NORPPA-main/segmentation/detectron_segment.py | from argparse import ArgumentParser
from PIL import Image
from detectron2 import model_zoo
from detectron2.config import get_cfg
from detectron2.engine import DefaultPredictor
import numpy as np
import cv2
import rawpy
from pathlib import Path
def is_raw_image(filename):
return filename.lower().endswith(('cr2', 'pef', 'nef'))
def convert_raw_img(path):
if is_raw_image(path):
with rawpy.imread(path) as raw:
rgb = raw.postprocess()
return rgb
return cv2.imread(path)
def pil2cv2(image):
return cv2.cvtColor(np.array(image), cv2.COLOR_RGB2BGR)
def apply_masks(im, masks):
final_mask = np.tile(np.expand_dims(np.sum(masks.detach().cpu().numpy(), axis=0), axis=2), (1, 1, 3))
seg_im = im * final_mask
return seg_im
def apply_mask(im, mask):
final_mask = np.tile(np.expand_dims(mask.detach().cpu().numpy(), axis=2), (1, 1, 3))
seg_im = im * final_mask
return seg_im
def create_predictor(model_path, use_cpu=False):
cfg = get_cfg()
cfg.merge_from_file(model_zoo.get_config_file(
"COCO-InstanceSegmentation/mask_rcnn_R_101_FPN_3x.yaml"))
cfg.MODEL.ROI_HEADS.NUM_CLASSES = 1
cfg.MODEL.WEIGHTS = str(model_path)
cfg.MODEL.ROI_HEADS.SCORE_THRESH_TEST = 0.8
cfg.MODEL.DEVICE = "cpu" if use_cpu else "cuda" # uncomment if gpu is unavailable
return DefaultPredictor(cfg)
def detectron_segment(predictor, source_image, instance_segmentation):
# im = convert_raw_img(source_image)
im = pil2cv2(source_image)
# im = Image.open(source_image)
# im = np.asarray(im)[:, :, ::-1]
outputs = predictor(im)
fields = outputs["instances"].get_fields()
b_boxes = fields["pred_boxes"].tensor.tolist() # bounding boxes
masks = fields["pred_masks"] # masks
num_instances = len(b_boxes) # number of detected instances in the current image
# print(num_instances)
result_images = []
if instance_segmentation:
for i in range(0, num_instances):
bb_i = list(map(int, b_boxes[i]))
crop_im = im[bb_i[1]:bb_i[3], bb_i[0]:bb_i[2]]
cur_mask = masks[i][bb_i[1]:bb_i[3], bb_i[0]:bb_i[2]]
bin_seg_im = apply_mask(crop_im, cur_mask)
bin_seg_im = Image.fromarray(np.uint8(bin_seg_im[:, :, ::-1]))
# cv2.imwrite(result_path.format(i), bin_seg_im)
if sum(bin_seg_im.convert("L").getextrema()) in (0, 2):
bin_seg_im = None
result_images.append(bin_seg_im)
else:
seg_im = apply_masks(im, masks)
seg_im = Image.fromarray(np.uint8(seg_im[:, :, ::-1]))
# seg_im.save(result_path)
# cv2.imwrite(result_path, seg_im)
if sum(seg_im.convert("L").getextrema()) in (0, 2):
seg_im = None
result_images.append(seg_im)
return result_images, num_instances
def main():
parser = ArgumentParser()
parser.add_argument("-s", "--source",
dest="src",
required=True,
help="directory containing source image")
parser.add_argument("-d", "--destination",
dest="dest",
required=True,
help="destination directory for the cropped dataset")
parser.add_argument("-c", "--crop",
nargs='?',
dest="crop",
const=True,
default=False,
help="should the image be croped")
args = parser.parse_args()
detectron_segment(args.src, args.dest, args.crop)
if __name__ == "__main__":
main()
| 3,654 | 32.842593 | 105 | py |
NORPPA | NORPPA-main/reidentification/geometric.py | from skimage.measure import label
from sklearn.decomposition import KernelPCA
from skimage.morphology import convex_hull_image, skeletonize
from cyvlfeat.fisher import fisher
from PIL import Image
import math
from sql import *
import torch
from torchvision import transforms
import pickle
from reidentification.encoding_utils import *
import numpy as np
import torchvision.datasets as dset
import gc
from datasets import DatasetSlice
import pickle
import cv2
import itertools as it
from HessianAffinePatches import extract_hesaff_patches
# Re-orders original results. Returns the new order of indices.
def re_evaluate(matches, est_cfg):
dists = [match["distance"] for match in matches]
inliers = geometric_verification(matches, est_cfg)
if len(inliers) == 0:
return matches
order = [(est_cfg["estimator"](dist, mask), mask, i) for i, (dist, mask) in enumerate(zip(dists, inliers))]
order.sort(key = lambda x: (x[0], x[2]))
return order
# Returns the logical array presenting inlier point correspondences, inliers set to 1 and outliers set to 0.
def geometric_verification(matches, est_cfg):
qr_patches_all = [match["patches"][0] for match in matches]
db_patches_all = [match["patches"][1] for match in matches]
qr_coordinates, db_coordinates = get_coordinates(qr_patches_all,
db_patches_all)
homographies, inliers = estimate_homographies(qr_coordinates,
db_coordinates,
est_cfg)
return inliers
def safe_max(x, *args, **kw_args):
if len(x) == 0:
return x
else:
return max(x, *args, **kw_args)
def safe_mean(x, *args, **kw_args):
if len(x) == 0:
return x
else:
return np.mean(x, *args, **kw_args)
# Extracts the x,y point correspondences and translate and scale point sets inside unit circle.
def get_coordinates(qr_patches_all, db_patches_all):
# get xy-pairs
qr_all = np.array([np.array([[qr[0], qr[1]] for qr in qr_patches])
for qr_patches in qr_patches_all], dtype=object)
db_all = np.array([np.array([[db[0], db[1]] for db in db_patches])
for db_patches in db_patches_all], dtype=object)
# translate to origin
qr_mean = np.array([safe_mean(qr_coords, axis=0) for qr_coords in qr_all], dtype=object)
db_mean = np.array([safe_mean(db_coords, axis=0) for db_coords in db_all], dtype=object)
for i, (qr, db) in enumerate(zip(qr_mean, db_mean)):
qr_all[i] -= qr
db_all[i] -= db
# set |p| <= 1
max_l_qr = [safe_max(qr, key=lambda p: np.linalg.norm(p)) for qr in qr_all]
max_l_db = [safe_max(db, key=lambda p: np.linalg.norm(p)) for db in db_all]
for i, (qr, db) in enumerate(zip(max_l_qr, max_l_db)):
if len(qr) == 0 or len(db) == 0:
continue
a, b = np.linalg.norm(qr), np.linalg.norm(db)
qr_all[i] /= a if a > np.finfo(float).eps else 1
db_all[i] /= b if b > np.finfo(float).eps else 1
return qr_all, db_all
def save_findHomography(qr_coords,db_coords,est_cfg):
if len(qr_coords)< 4 or len(db_coords) < 4:
return np.eye(3),np.full((len(qr_coords), 1), True)
return cv2.findHomography(qr_coords.astype(np.float),
db_coords.astype(np.float),
method=est_cfg["method"],
ransacReprojThreshold=est_cfg["max_reproj_err"],
maxIters=est_cfg["max_iters"])
# Finds homographies for each query-database image pairs.
def estimate_homographies(qr_coords_all,
db_coords_all,
est_cfg):
models = [
save_findHomography(qr_coords,db_coords,est_cfg)
for qr_coords, db_coords in zip(qr_coords_all, db_coords_all)
]
homographies = [H for H, _ in models]
inliers = [I for _, I in models]
return homographies, inliers
| 4,128 | 32.298387 | 111 | py |
NORPPA | NORPPA-main/reidentification/visualisation.py | from PIL import Image
import matplotlib.pyplot as plt
import numpy as np
from reidentification.identify import fisher_single, do_matching
from reidentification.encoding_utils import calculate_dists
def rescale_img(img, scale):
return img.resize([int(s*scale) for s in img.size], Image.Resampling.LANCZOS)
def resize_to_img(img, dest_img):
ratio = dest_img.size[0]/img.size[0]
return (rescale_img(img, ratio), ratio)
"""
Function for plotting the hotspot
Input args:
plt - plot
ell - ellipse defining the hotspot, vector of 5 elements [x, y, major semi-axis length, minor semi-axis length, rotation angle]
colors -colormap for plotting
shift - shift to correctly display right image hotspots
scale - scale in case if the image is resized
n_rad - number of layers in ellipse
max_opacity - maximum opacity
n_pts - number of points for ellipse plotting
"""
def ell2plotMatch(plt, ell, colors, shift=[0, 0], scale=1, n_rad=15, max_opacity=0.1, n_pts=10):
for i, rad in enumerate(np.linspace(1, 0, n_rad)):
# generate angles from 0 to 2pi
a = np.linspace(0, 2*np.pi, n_pts);
# generate x and y to plot an ellipse without rotation
x = ell[2] * rad * np.sin(a).reshape(1,-1)
y = ell[3] * rad * np.cos(a).reshape(1,-1)
pts =np.concatenate([x,y], axis=0)
# calculate rotation matrix
cos = np.cos(ell[4])
sin = np.sin(ell[4])
rot_mat = np.array([[cos, -sin],
[sin, cos]])
# rotate the ellipse
pts = rot_mat @ pts
# shift and scale of the ellipse
pts[0, :] = shift[0] + (pts[0, :] + ell[0]) * scale
pts[1, :] = shift[1] + (pts[1, :] + ell[1]) * scale
# plot the ellipse
c = colors(i)
plt.plot(pts[0, :], pts[1, :], color=[c[0], c[1], c[2], min(1, max_opacity*(1-rad))])
# return the x,y of ellipse center
return [shift[0] + ell[0] * scale, shift[1] + ell[1] * scale]
def prepare_query(query_label, uncropped, path_to_load):
load_path = query_label[path_to_load].replace("whaleshark_norppa_tonemapped_pattern_maxim","whaleshark_norppa_tonemapped")
if query_label.get("resize_ratio", 0) != 0:
query_ratio = query_label["resize_ratio"]
else:
query_ratio = 1
if uncropped and query_label.get("bb", 0) != 0:
query_shift = query_label["bb"][:2]
else:
query_shift = [0, 0]
query_shift = [x*query_ratio for x in query_shift]
query_img = rescale_img(Image.open(load_path), query_ratio)
return query_img, query_shift, query_ratio
filenum = 0
def visualise_match(input, topk=5, path_to_load="file", uncropped=True, gap=20, n_rad=50, n_pts=10, figsize=(24, 24), inlier_color=(0.4,0.87,0.09), outlier_color=(.87, .09, .09), in_cmap="viridis", out_cmap= "inferno", filename=None, filtering_func=lambda match, query_label: True):
matches, query_labels = input
global filenum
for k, match in enumerate(matches[0:topk]):
db_label = match["db_label"]
query_label = query_labels["labels"][match["query_ind"]]
if not filtering_func(match, query_label):
continue
fig = plt.figure(figsize=figsize)
query_img, query_shift, query_ratio = prepare_query(query_label, uncropped, path_to_load)
query_patches, db_patches, similarity = match["patches"]
db_data = db_label["labels"][match["db_ind"]]
load_path = db_data[path_to_load].replace("whaleshark_norppa_tonemapped_pattern_maxim","whaleshark_norppa_tonemapped")
db_img = Image.open(load_path)
db_img, ratio = resize_to_img(db_img, query_img)
db_ratio = ratio/db_data.get("resize_ratio", 1)
shift = [x*ratio for x in (db_data.get("bb", [0, 0])[:2] if uncropped else [0, 0])]
shift = (shift[0], shift[1] + query_img.size[1] + gap)
full_img = Image.new('RGB', (query_img.size[0], query_img.size[1]+db_img.size[1]+gap), color="white")
full_img.paste(query_img, (0, 0))
full_img.paste(db_img, (0, query_img.size[1] + gap))
colors = plt.get_cmap("viridis", n_rad)
colors_in = plt.get_cmap(in_cmap, n_rad)
colors_out = plt.get_cmap(out_cmap, n_rad)
plt.axis("off")
plt.imshow(full_img)
mask = match.get("Mask", np.full(len(query_patches), True)).squeeze()
# print("Mask" in match)
# print(mask)
if "Geom_Est" in match:
plt.title(f'Distance: {match["distance"]:.5f} Inliers: {np.sum(mask)} Estimation: {match["Geom_Est"]:.5f}')
else:
plt.title(f'Distance: {match["distance"]:.5f}')
plt.title(f'Distance: {match["distance"]}')
plt.title(f'Query: class {query_label["class_id"]}', loc='left')
plt.title(f'Top-{k+1}: class {db_label["class_id"]}', loc='right')
# Separating inliers and outliers
inliers_qr = [point for point, i in zip(query_patches, mask) if i == 1]
inliers_db = [point for point, i in zip(db_patches, mask) if i == 1]
outliers_qr = [point for point, i in zip(query_patches, mask) if i == 0]
outliers_db = [point for point, i in zip(db_patches, mask) if i == 0]
# Plotting outliers first
for LAF_q, LAF_db, sim in zip(outliers_qr, outliers_db, similarity):
# Intensity depends on feature similarity
# max opacity can be determined with the similarity parameter as well. The same applies to inlier plot loop.
max_opacity = sim # .4
p1 = ell2plotMatch(plt, LAF_q, colors_out, shift=query_shift,n_rad=n_rad, max_opacity=max_opacity, n_pts=n_pts)
p2 = ell2plotMatch(plt, LAF_db, colors_out, shift=shift, scale=db_ratio, n_rad=n_rad, max_opacity=max_opacity, n_pts=n_pts)
# draw line between patch centers
plt.plot([p1[0], p2[0]], [p1[1], p2[1]], color=(*outlier_color, min(max_opacity* 3, 1)))
# Plotting inliers
for LAF_q, LAF_db, sim in zip(inliers_qr, inliers_db, similarity):
max_opacity = sim # .4
p1 = ell2plotMatch(plt, LAF_q, colors_in, shift=query_shift,n_rad=n_rad, max_opacity=max_opacity, n_pts=n_pts)
p2 = ell2plotMatch(plt, LAF_db, colors_in, shift=shift, scale=db_ratio, n_rad=n_rad, max_opacity=max_opacity, n_pts=n_pts)
plt.plot([p1[0], p2[0]], [p1[1], p2[1]], color=(*inlier_color, min(max_opacity* 3, 1)))
if filename:
plt.savefig(filename + str(filenum) + ".png", bbox_inches='tight')
filenum += 1
else:
plt.show()
plt.close(fig)
return [input]
| 6,875 | 43.36129 | 282 | py |
NORPPA | NORPPA-main/reidentification/encoding_utils.py | from scipy.spatial.distance import cdist
from sklearn.decomposition import IncrementalPCA
from cyvlfeat.gmm import gmm
from cyvlfeat.fisher import fisher
from scipy.spatial.distance import cdist, cosine
import numpy as np
import os
import shutil
from PIL import Image
import io
from base64 import encodebytes
from sklearn.mixture import GaussianMixture
import math
def cdist_std(x, y):
return cdist(x, y, "cosine")
def create_sequences_step():
return None
def calculate_dists(test_features, db_features, dist_func=cdist_std, leave_one_out=False):
dists = dist_func(test_features, db_features)
if leave_one_out:
np.fill_diagonal(dists, np.max(dists)+1)
inds = np.argsort(dists, axis=1)
return (dists, inds)
def get_encoding_parameters(features, n_clusters=256, verbose=False):
print("Using old gmm...", flush=True)
means, covars, priors, _, _ = gmm(features,
n_clusters,
init_mode='kmeans',
verbose=False)
return (means, covars, priors)
# def get_encoding_parameters(features, n_clusters=256, verbose=False, batch_size=32*1024):
# gm = GaussianMixture(n_components=n_clusters, covariance_type='diag', random_state=0, verbose=2 * verbose, verbose_interval=1, warm_start=True)
# for i in range(int(math.ceil(features.shape[0] / batch_size))):
# gm.fit(features[(i*batch_size):min((i+1)*batch_size, features.shape[0])])
# return (gm.means_, gm.covariances_, gm.weights_)
# def encode_image(features, encoding_params):
# encoded = np.zeros((features.shape[0],
# 2 * features.shape[1]
# * encoding_params[0].shape[0]))
# for i in enumerate(range(features.shape[0])):
# encoded[i, :] = fisher(features[i, :], *encoding_params, improved=True)
# return encoded
def l2_normalize(v):
norm = np.linalg.norm(v)
if norm == 0:
return v
return v / norm
def power_normalize(v, p=0.5):
return np.sign(v) * np.power(np.abs(v), p)
def encode_all_images(features, inds, encoding_params):
img_inds = np.unique(inds)
n = img_inds[-1] + 1
encoded = np.zeros((n,
2 * features.shape[1]
* encoding_params[0].shape[0]))
patch_features = [None] * n
for i in img_inds:
filt, = np.where(inds == i)
patch_features[i] = features[filt, :]
encoded[i, :] = fisher(patch_features[i], *encoding_params, improved=True)
return encoded, patch_features
def get_topk_acc(labels_q, labels_db, indices, topk):
top_labels = np.array(labels_db)[indices[:, :topk]]
hits = (top_labels.T == labels_q).T
return [sum((np.sum(hits[:, :j+1], axis=1) > 0)) / len(labels_q)
for j in range(topk)]
def encode_pca(encoded, n_components=64, whiten=False):
# print("Computing PCA...")
pca = IncrementalPCA(n_components=n_components, whiten=True) #, svd_solver='full')
# print("Applying PCA...")
reduced = pca.fit_transform(encoded)
return (reduced, pca)
def apply_pca(encoded, pca):
return pca.transform(encoded)
def copytree(src, dst, symlinks=False, ignore=None):
for item in os.listdir(src):
s = os.path.join(src, item)
d = os.path.join(dst, item)
if os.path.isdir(s):
shutil.copytree(s, d, symlinks, ignore)
else:
shutil.copy2(s, d)
def getImageBytes(filePath):
img = Image.open(filePath, mode='r')
byte_arr = io.BytesIO()
img.save(byte_arr, format='PNG')
encoded_img = encodebytes(byte_arr.getvalue()).decode('ascii')
return encoded_img
def copy_files(src,dst):
if not os.path.exists(dst):
os.mkdir(dst)
for dirpath, _, filenames in os.walk(src):
for filename in filenames:
source = os.path.join(dirpath, filename)
destination = os.path.join(dst, filename)
shutil.copy(source,destination)
| 4,071 | 29.616541 | 149 | py |
NORPPA | NORPPA-main/reidentification/find_matches.py | from PIL import Image
import matplotlib.pyplot as plt
import numpy as np
from reidentification.identify import fisher_single, do_matching
from reidentification.encoding_utils import calculate_dists
def find_matches(identification_result, cfg):
matches, query_labels = identification_result
query_images = query_labels["labels"]
if len(query_images) == 1:
query_fishers = [query_labels["fisher"]]
else:
query_fishers = [fisher_single(query_image['features'],cfg) for query_image in query_images]
db_encodings = []
for (j,match) in enumerate(matches):
db_images = match["db_label"]["labels"]
if len(db_images)==1:
db_fishers = [match["db_label"]["fisher"]]
else:
db_fishers = [fisher_single(db_image['features'],cfg) for db_image in db_images]
(dists, _) = calculate_dists(query_fishers, db_fishers)
dists = np.nan_to_num(dists, nan=2)
ind1, ind2 = np.unravel_index(np.argmin(dists, axis=None), dists.shape)
query_patch_features = query_images[ind1]['features']
db_patch_features = db_images[ind2]['features']
query_ellipses = query_images[ind1]['ellipses']
db_ellipses = db_images[ind2]['ellipses']
(filt, sorted_inds, similarity) = do_matching(query_patch_features, db_patch_features)
matches[j]["db_ind"] = ind2
matches[j]["query_ind"] = ind1
matches[j]["patches"] = [
[query_ellipses[k].tolist() for k in filt],
[db_ellipses[k].tolist() for k in sorted_inds],
similarity.tolist()
]
return [(matches, query_labels)] | 1,666 | 38.690476 | 101 | py |
NORPPA | NORPPA-main/reidentification/identify.py | from skimage.measure import label
from sklearn.decomposition import KernelPCA
from skimage.morphology import convex_hull_image, skeletonize
from cyvlfeat.fisher import fisher
from PIL import Image
import math
from sql import *
import torch
from torchvision import transforms
import pickle
from reidentification.encoding_utils import *
from reidentification.geometric import *
import numpy as np
import torchvision.datasets as dset
import gc
from datasets import DatasetSlice
import pickle
import cv2
import itertools as it
from HessianAffinePatches import extract_hesaff_patches
from extract_patches.core import extract_patches as keypoints_to_patches
import kornia as K
import kornia.feature as KF
from kornia_moons.feature import *
torch.autograd.set_grad_enabled(False)
from tqdm import tqdm
def get_patch_num(width, patch_size, step):
return math.ceil((width - patch_size + 1)/step)
def crop_image(img, target, size):
start_x, start_y = target
end_x, end_y = start_x + size, start_y + size
cropped = img.crop((start_x, start_y, end_x, end_y))
return cropped
def thickness_resize(img, thickness=2):
img0 = np.array(img) > 0
area = np.sum(img0)
img1 = skeletonize(img0)
length = np.sum(img1)
thickness_current = area / length
ratio = thickness / thickness_current
return (img.resize(tuple(int(i * ratio) for i in img.size), Image.ANTIALIAS), ratio)
def check_filled_area(min_val=0.15):
def func(patch):
return np.mean(patch > 0) > min_val
return func
def check_largest_CC(min_val=100):
def func(patch):
labels = label(patch)
if labels.max() == 0:
return False
largestCC = labels == np.argmax(np.bincount(labels.flat)[1:]) + 1
return sum(largestCC) >= min_val
return func
def check_convex_hull_area(min_val=0.5):
def func(patch):
if np.max(patch) == 0:
return False
chull = convex_hull_image(patch.copy())
return np.mean(chull > 0) > min_val
return func
def check_bounding_box_area(min_val=0.8):
def func(patch):
if np.max(patch) == 0:
return False
where = np.nonzero(patch)
y1, x1 = np.amin(where, axis=1)
y2, x2 = np.amax(where, axis=1)
ratio = ((x2 - x1) * (y2 - y1)) / (patch.shape[-1] * patch.shape[-2])
return ratio > min_val
return func
def always_true(patch):
return True
def test_patch(patch, filters):
return np.all([f(patch) for f in filters])
def get_step_range(size, patch_size, step):
fin = size-patch_size+1
return [0] if fin < 1 else range(0, fin, step)
def extract_dense_patches(img, patch_size=48, step=24, final_size=48,
filter_funcs=[check_filled_area(),
check_convex_hull_area()]):
size = img.size
result = []
pos = []
for x in get_step_range(size[0], patch_size, step):
for y in get_step_range(size[1], patch_size, step):
patch = crop_image(img, (x, y), patch_size)
if patch_size != final_size:
patch = patch.resize((final_size, final_size), Image.NONE)
patch = np.asarray(patch)
if test_patch(patch, filter_funcs):
result.append(patch)
pos.append((x, y))
if len(result) == 0:
return None
result = np.stack(result, axis=0)
return result, pos
def apply_net(patch, net):
with torch.no_grad():
return net.forward(patch).detach().cpu().numpy()
def apply_batch_net(patches, net, batch_size=256):
indices = np.append(np.arange(start=0, stop=patches.shape[0], step=batch_size), patches.shape[0])
ind_pairs = list(zip(indices[:-1], indices[1:]))
return np.concatenate([apply_net(patches[start:end,...], net) for (start, end) in ind_pairs])
def cvkeypoint_to_ell(keypoint):
return [keypoint.pt[0], keypoint.pt[1], keypoint.size/2, keypoint.size/2, keypoint.angle * math.pi/180]
def extract_sift_patches(image, patch_size=32, sigma=1.6, nfeatures=480, nOctaveLayers=3, contrastThreshold=0.02, edgeThreshold=5, scale=2):
image = np.array(image)
sift = cv2.SIFT_create(nfeatures=nfeatures, nOctaveLayers=nOctaveLayers, contrastThreshold=contrastThreshold, edgeThreshold=edgeThreshold, sigma=sigma)
keypoints = sift.detect(image)
if scale != 1:
for i in range(len(keypoints)):
keypoints[i].size *= scale
patches = np.array(keypoints_to_patches(keypoints, image, patch_size, sigma, 'cv2'))
ells = np.array([np.array(cvkeypoint_to_ell(kp)) for kp in keypoints])
return patches, ells
def patch_extraction(image, config):
if config["use_hesaff"] or config.get("patch_extraction", "hesaff") == "hesaff":
return extract_hesaff_patches(image, **config["hesaff_args"])
elif config.get("patch_extraction", "hesaff") == "sift":
return extract_sift_patches(image, **(config.get("sift_args", {})))
else:
return extract_dense_patches(image, **config["dense_args"])
def fisher_single(patch_features, cfg):
codebooks = load_codebooks(cfg)
encoding_params = codebooks["gmm"]
encoded = fisher(patch_features, *encoding_params, improved=True)
return encoded
def fisher_multiple(db_features, db_ids, cfg):
codebooks = load_codebooks(cfg)
encoding_params = codebooks["gmm"]
_, indices = np.unique(db_ids, return_inverse=True)
encoded, _ = encode_all_images(db_features, indices, encoding_params)
return encoded
def stable_unique(a):
indexes = np.unique(a, return_index=True)[1]
return [a[index] for index in sorted(indexes)]
def group_by(dataset, group_label, patches):
groups = stable_unique([labels[group_label] for (img, labels) in dataset])
mapping = {group:i for (i,group) in enumerate(groups)}
group_ids = len(dataset) * [None]
group_labels = [{'labels':[], 'class_id':None} for _ in range(len(groups))]
features, inds, all_ells = patches
# all_ells = np.array(all_ells)
for (i, (img, label)) in enumerate(dataset):
group_id = mapping[label[group_label]]
group_ids[i] = group_id
label['id'] = i
filt, = np.where(inds == i)
label['features'] = features[filt, :]
label['ellipses'] = all_ells[i]
group_labels[group_id]['labels'].append(label)
group_labels[group_id]['class_id'] = label['class_id']
return group_ids, group_labels
def getKeyNetAffNetHardNet(num_features=5000, upright=False, scale_laf=1.0):
def init(device):
return KF.KeyNetAffNetHardNet(num_features=num_features, upright=upright, device=device, scale_laf=scale_laf)
def apply(image, detector, dataset_transforms, device):
image = dataset_transforms(image)
image = np.array(image)[None, :, :, None]
timg = K.image_to_tensor(image, False).float()/255.
timg = timg.to(device)
lafs, _, descs = detector(timg)
kps_back = opencv_kpts_from_laf(lafs, scale_laf)
patch_features = descs.cpu()[0, ]
ells = np.array([[kp.pt[0], kp.pt[1], kp.size, kp.size, kp.angle] for kp in kps_back])
return patch_features, ells
return init, apply
def getDISK(pretrained='depth'):
def init(device):
return KF.DISK.from_pretrained(pretrained, device=device)
def apply(image, detector, dataset_transforms, device):
image = np.array(image.convert("RGB"))[None, :, :]
timg = K.image_to_tensor(image, False).float()/255.
timg = timg.to(device)
disk = detector(timg, pad_if_not_divisible=True)[0]
patch_features = disk.descriptors.cpu().numpy()
pts = disk.keypoints.cpu().numpy()
ells = np.array([[kp[0], kp[1], 5, 5, 0] for kp in pts])
return patch_features, ells
return init, apply
def getHessAffNetHardNet(cfg):
def init(device):
return cfg["net"]
def apply(image, detector, dataset_transforms, device):
image = dataset_transforms(image)
if sum(image.getextrema()) == 0:
all_ells.append(None)
labels.append(img_label)
return [], []
patches, ells = patch_extraction(image, cfg)
if patches is None or len(patches) == 0:
return [], []
patch_features = torch.from_numpy(patches/255).float().unsqueeze(1)
if cfg["use_cuda"]:
patch_features = patch_features.cuda()
patch_features = apply_batch_net(patch_features, detector, batch_size=cfg["batch_size"])
return patch_features, ells
return init, apply
def patchify(dataset, config, init_apply=None):
if init_apply is None:
init_apply = getHessAffNetHardNet(config)
result = []
labels = []
inds = []
all_ells = []
ind = 0
dataset_transforms = transforms.Grayscale(num_output_channels=1)
init, apply = init_apply
device = torch.device('cuda') if config['use_cuda'] else torch.device('cpu')
print(f"Using device {device}")
detector = init(device)
for i, (image, img_label) in enumerate(tqdm(dataset)):
if image is None or sum(dataset_transforms(image).getextrema()) == 0:
all_ells.append(None)
labels.append(img_label)
continue
patch_features, ells = apply(image, detector, dataset_transforms, device)
all_ells.append(ells)
inds.extend([i] * patch_features.shape[0])
labels.append(img_label)
result.append(patch_features)
labels = np.array(labels)
return np.vstack(result), np.array(inds), labels, all_ells
def extract_patches(dataset, config, init_apply=None):
return (dataset, patchify(dataset, config, init_apply))
def _encode_patches(dataset_patches, config, codebooks=None, group_label='file'):
(dataset, (features, inds, labels, ellipses)) = dataset_patches
print("Calculating PCA")
if codebooks is None:
features, pca = encode_pca(features, n_components=config["pca"], whiten=True)
else:
features = apply_pca(features, codebooks["pca"])
group_ids, group_labels = group_by(dataset, group_label, (features, inds, ellipses))
group = (group_ids is not None) and (group_labels is not None)
if group and len(group_ids)>1:
groups = np.array(group_ids).squeeze()
updated_inds = groups[inds]
else:
updated_inds = inds
labels = np.array(group_labels)
print("Getting encoding parameters...", flush=True)
if codebooks is None:
encoding_params = get_encoding_parameters(features, n_clusters=config["n_clusters"], verbose=True)
else:
encoding_params = codebooks["gmm"]
print("Encoding...")
features, patch_features = encode_all_images(features, updated_inds, encoding_params)
kpca = None
if config["use_kpca"]:
if codebooks["kpca"] is None:
kpca = KernelPCA(n_components=None, kernel=config["kernel"], remove_zero_eig=True)
features = kpca.fit_transform(features)
elif codebooks["kpca"] is not None:
features = codebooks["kpca"].transform(features)
if codebooks is None:
codebooks = {'pca': pca, 'gmm': encoding_params, 'kpca': kpca}
return features, labels, codebooks
def _encode_dataset(dataset, config, codebooks=None, group_label='file'):
return encode_patches(extract_patches(dataset, config), config, codebooks, group_label)
def do_matching(test_feats, db_feats, percentile=10):
dists, sorted_inds = calculate_dists(test_feats, db_feats)
sorted_dists = np.take_along_axis(dists, sorted_inds, axis=1)
# print(sorted_dists.shape)
if test_feats.size == 0 or db_feats.size == 0:
return (np.array([]), np.array([]), np.array([]))
mean_dist = np.percentile(sorted_dists[:, 0], percentile)
filt = sorted_dists[:, 0] <= mean_dist
sorted_inds = sorted_inds[filt, 0]
sorted_dists = sorted_dists[filt, 0]
similarity = (np.max(sorted_dists) - sorted_dists) / np.max(sorted_dists)
filt = np.nonzero(filt)[0]
similarity[np.isnan(similarity)] = 1.0
max_len = 200
if len(similarity) > max_len:
similarity = similarity[:max_len]
sorted_inds = sorted_inds[:max_len]
filt = filt[:max_len]
return (filt, sorted_inds, similarity)
def do_matching_geom(test_feats, test_patches, db_feats, db_patches, percentile=10):
pass
def match_topk(test_features, db_features, topk, leave_one_out=False):
dists, inds = calculate_dists(test_features, db_features, leave_one_out=leave_one_out)
sorted_inds = np.argsort(dists, axis=1)
dists = np.take_along_axis(dists, sorted_inds, axis=1)
return dists[:, :topk], sorted_inds[:, :topk]
def load_codebooks(cfg):
if cfg['codebooks'] is None:
print(cfg["codebooks_path"])
with open(cfg['codebooks_path'],"rb") as codebooks_file:
cfg['codebooks'] = pickle.load(codebooks_file)
return cfg['codebooks']
def encode_single(image, label, cfg):
if image is None:
return image
dataset_transforms = transforms.Grayscale(num_output_channels=1)
image = dataset_transforms(image)
return encode_dataset([(image, label)], cfg)
def encode_pipeline(input, cfg):
if input[0] is None:
return input
return encode_dataset([input], cfg)
def encode_dataset(dataset, cfg, group_label='file', init_apply_encoders=None, compute_codebooks=False):
patches = extract_patches(dataset, cfg, init_apply_encoders)
return encode_patches(patches, cfg, group_label=group_label, compute_codebooks=compute_codebooks)
def encode_patches(dataset, cfg, group_label='file', compute_codebooks=False):
if compute_codebooks:
codebooks = None
else:
codebooks = load_codebooks(cfg)
query_features, query_labels, codebooks = _encode_patches(dataset, cfg, codebooks, group_label)
if compute_codebooks:
return (codebooks, list(zip(query_features, query_labels)))
else:
return list(zip(query_features, query_labels))
def identify_single(query, database, cfg):
return identify([query], database, cfg)
def get_fisher_vectors(db):
if hasattr(db, 'get_fisher_vectors'):
return db.get_fisher_vectors()
else:
return np.concatenate([f[np.newaxis,...] for (f, _) in db])
def get_label(db, i):
if hasattr(db, 'get_label'):
return db.get_label(i)
else:
return db[i][1]
def identify(query, database=None, topk=5, leave_one_out=False):
if database is None:
database = query
query_features = np.concatenate([f[np.newaxis,...] for (f, _) in query])
def add_fisher_field(label, fisher):
label["fisher"] = fisher
return label
query_labels = [add_fisher_field(l, f) for (f, l) in query]
db_features = get_fisher_vectors(database)
dists, request_ids = match_topk(query_features, db_features, topk, leave_one_out=leave_one_out)
matches = [None] * request_ids.shape[0]
for i in tqdm(range(request_ids.shape[0])):
matches[i] = [None] * request_ids.shape[1]
for j in range(request_ids.shape[1]):
matches[i][j] = {"db_label": add_fisher_field(get_label(database, request_ids[i, j]), db_features[request_ids[i, j]]), "distance": dists[i, j]}
return list(zip(matches, query_labels))
def apply_geometric(input, params):
matches, query_labels = input
order = re_evaluate(matches, params)
for est, mask, k in order:
matches[k]["Geom_Est"] = est
matches[k]["Mask"] = mask
matches = [matches[k] for _, _, k in order]
return [(matches, query_labels)]
def create_sql_database(dataset, cfg, db_components, seal_type="norppa", compute_codebooks=False):
create_database_table(cfg["conn"])
create_patches_table(cfg["conn"])
if compute_codebooks:
codebooks = None
else:
codebooks = load_codebooks(cfg)
db_features, db_labels, patch_features, patches = db_components
now = datetime.now()
now = now.strftime("%d-%m-%YT%H:%M:%S")
for i, (image, image_label) in enumerate(dataset):
img_id = insert_database(cfg["conn"],image_label["file"], db_labels[i]["class_id"], seal_type, db_features[i, ...], now)
if patches[i] is not None:
for j, patch in enumerate(patches[i]):
insert_patches(cfg["conn"], img_id, patch, patch_features[i][j, ...])
del db_features
del patch_features
del patches
del db_labels
gc.collect()
cfg["conn"].commit()
| 16,717 | 33.328542 | 155 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/HandCraftedModules.py | import torch
import torch.nn as nn
import torch.nn.functional as F
from torch.autograd import Variable
import math
import numpy as np
from Utils import GaussianBlur, CircularGaussKernel
from LAF import abc2A,rectifyAffineTransformationUpIsUp, sc_y_x2LAFs
from Utils import generate_2dgrid, generate_2dgrid, generate_3dgrid
from Utils import zero_response_at_border
class ScalePyramid(nn.Module):
def __init__(self, nLevels = 3, init_sigma = 1.6, border = 5):
super(ScalePyramid,self).__init__()
self.nLevels = nLevels;
self.init_sigma = init_sigma
self.sigmaStep = 2 ** (1. / float(self.nLevels))
#print 'step',self.sigmaStep
self.b = border
self.minSize = 2 * self.b + 2 + 1;
return
def forward(self,x):
pixelDistance = 1.0;
curSigma = 0.5
if self.init_sigma > curSigma:
sigma = np.sqrt(self.init_sigma**2 - curSigma**2)
curSigma = self.init_sigma
curr = GaussianBlur(sigma = sigma)(x)
else:
curr = x
sigmas = [[curSigma]]
pixel_dists = [[1.0]]
pyr = [[curr]]
j = 0
while True:
curr = pyr[-1][0]
for i in range(1, self.nLevels + 2):
sigma = curSigma * np.sqrt(self.sigmaStep*self.sigmaStep - 1.0 )
#print 'blur sigma', sigma
curr = GaussianBlur(sigma = sigma)(curr)
curSigma *= self.sigmaStep
pyr[j].append(curr)
sigmas[j].append(curSigma)
pixel_dists[j].append(pixelDistance)
if i == self.nLevels:
nextOctaveFirstLevel = F.avg_pool2d(curr, kernel_size = 1, stride = 2, padding = 0)
pixelDistance = pixelDistance * 2.0
curSigma = self.init_sigma
if (nextOctaveFirstLevel[0,0,:,:].size(0) <= self.minSize) or (nextOctaveFirstLevel[0,0,:,:].size(1) <= self.minSize):
break
pyr.append([nextOctaveFirstLevel])
sigmas.append([curSigma])
pixel_dists.append([pixelDistance])
j+=1
return pyr, sigmas, pixel_dists
class HessianResp(nn.Module):
def __init__(self):
super(HessianResp, self).__init__()
self.gx = nn.Conv2d(1, 1, kernel_size=(1,3), bias = False)
self.gx.weight.data = torch.from_numpy(np.array([[[[0.5, 0, -0.5]]]], dtype=np.float32))
self.gy = nn.Conv2d(1, 1, kernel_size=(3,1), bias = False)
self.gy.weight.data = torch.from_numpy(np.array([[[[0.5], [0], [-0.5]]]], dtype=np.float32))
self.gxx = nn.Conv2d(1, 1, kernel_size=(1,3),bias = False)
self.gxx.weight.data = torch.from_numpy(np.array([[[[1.0, -2.0, 1.0]]]], dtype=np.float32))
self.gyy = nn.Conv2d(1, 1, kernel_size=(3,1), bias = False)
self.gyy.weight.data = torch.from_numpy(np.array([[[[1.0], [-2.0], [1.0]]]], dtype=np.float32))
return
def forward(self, x, scale):
gxx = self.gxx(F.pad(x, (1,1,0, 0), 'replicate'))
gyy = self.gyy(F.pad(x, (0,0, 1,1), 'replicate'))
gxy = self.gy(F.pad(self.gx(F.pad(x, (1,1,0, 0), 'replicate')), (0,0, 1,1), 'replicate'))
return torch.abs(gxx * gyy - gxy * gxy) * (scale**4)
class AffineShapeEstimator(nn.Module):
def __init__(self, threshold = 0.001, patch_size = 19):
super(AffineShapeEstimator, self).__init__()
self.threshold = threshold;
self.PS = patch_size
self.gx = nn.Conv2d(1, 1, kernel_size=(1,3), bias = False)
self.gx.weight.data = torch.from_numpy(np.array([[[[-1, 0, 1]]]], dtype=np.float32))
self.gy = nn.Conv2d(1, 1, kernel_size=(3,1), bias = False)
self.gy.weight.data = torch.from_numpy(np.array([[[[-1], [0], [1]]]], dtype=np.float32))
self.gk = torch.from_numpy(CircularGaussKernel(kernlen = self.PS, sigma = (self.PS / 2) /3.0).astype(np.float32))
self.gk = Variable(self.gk, requires_grad=False)
return
def invSqrt(self,a,b,c):
eps = 1e-12
mask = (b != 0).float()
r1 = mask * (c - a) / (2. * b + eps)
t1 = torch.sign(r1) / (torch.abs(r1) + torch.sqrt(1. + r1*r1));
r = 1.0 / torch.sqrt( 1. + t1*t1)
t = t1*r;
r = r * mask + 1.0 * (1.0 - mask);
t = t * mask;
x = 1. / torch.sqrt( r*r*a - 2.0*r*t*b + t*t*c)
z = 1. / torch.sqrt( t*t*a + 2.0*r*t*b + r*r*c)
d = torch.sqrt( x * z)
x = x / d
z = z / d
l1 = torch.max(x,z)
l2 = torch.min(x,z)
new_a = r*r*x + t*t*z
new_b = -r*t*x + t*r*z
new_c = t*t*x + r*r *z
return new_a, new_b, new_c, l1, l2
def forward(self,x, return_mask = False):
if x.is_cuda:
self.gk = self.gk.cuda()
else:
self.gk = self.gk.cpu()
gx = self.gx(F.pad(x, (1, 1, 0, 0), 'replicate'))
gy = self.gy(F.pad(x, (0, 0, 1, 1), 'replicate'))
a1 = (gx * gx * self.gk.unsqueeze(0).unsqueeze(0).expand_as(gx)).view(x.size(0),-1).mean(dim=1)
b1 = (gx * gy * self.gk.unsqueeze(0).unsqueeze(0).expand_as(gx)).view(x.size(0),-1).mean(dim=1)
c1 = (gy * gy * self.gk.unsqueeze(0).unsqueeze(0).expand_as(gx)).view(x.size(0),-1).mean(dim=1)
a, b, c, l1, l2 = self.invSqrt(a1,b1,c1)
rat1 = l1/l2
mask = (torch.abs(rat1) <= 6.).float().view(-1);
if return_mask:
return abc2A(a,b,c), mask
else:
return abc2A(a,b,c)
class OrientationDetector(nn.Module):
def __init__(self,
mrSize = 3.0, patch_size = None):
super(OrientationDetector, self).__init__()
if patch_size is None:
patch_size = 32;
self.PS = patch_size;
self.bin_weight_kernel_size, self.bin_weight_stride = self.get_bin_weight_kernel_size_and_stride(self.PS, 1)
self.mrSize = mrSize;
self.num_ang_bins = 36
self.gx = nn.Conv2d(1, 1, kernel_size=(1,3), bias = False)
self.gx.weight.data = torch.from_numpy(np.array([[[[0.5, 0, -0.5]]]], dtype=np.float32))
self.gy = nn.Conv2d(1, 1, kernel_size=(3,1), bias = False)
self.gy.weight.data = torch.from_numpy(np.array([[[[0.5], [0], [-0.5]]]], dtype=np.float32))
self.angular_smooth = nn.Conv1d(1, 1, kernel_size=3, padding = 1, bias = False)
self.angular_smooth.weight.data = torch.from_numpy(np.array([[[0.33, 0.34, 0.33]]], dtype=np.float32))
self.gk = 10. * torch.from_numpy(CircularGaussKernel(kernlen=self.PS).astype(np.float32))
self.gk = Variable(self.gk, requires_grad=False)
return
def get_bin_weight_kernel_size_and_stride(self, patch_size, num_spatial_bins):
bin_weight_stride = int(round(2.0 * np.floor(patch_size / 2) / float(num_spatial_bins + 1)))
bin_weight_kernel_size = int(2 * bin_weight_stride - 1);
return bin_weight_kernel_size, bin_weight_stride
def get_rotation_matrix(self, angle_in_radians):
angle_in_radians = angle_in_radians.view(-1, 1, 1);
sin_a = torch.sin(angle_in_radians)
cos_a = torch.cos(angle_in_radians)
A1_x = torch.cat([cos_a, sin_a], dim = 2)
A2_x = torch.cat([-sin_a, cos_a], dim = 2)
transform = torch.cat([A1_x,A2_x], dim = 1)
return transform
def forward(self, x, return_rot_matrix = False):
gx = self.gx(F.pad(x, (1,1,0, 0), 'replicate'))
gy = self.gy(F.pad(x, (0,0, 1,1), 'replicate'))
mag = torch.sqrt(gx * gx + gy * gy + 1e-10)
if x.is_cuda:
self.gk = self.gk.cuda()
mag = mag * self.gk.unsqueeze(0).unsqueeze(0).expand_as(mag)
ori = torch.atan2(gy,gx)
o_big = float(self.num_ang_bins) *(ori + 1.0 * math.pi )/ (2.0 * math.pi)
bo0_big = torch.floor(o_big)
wo1_big = o_big - bo0_big
bo0_big = bo0_big % self.num_ang_bins
bo1_big = (bo0_big + 1) % self.num_ang_bins
wo0_big = (1.0 - wo1_big) * mag
wo1_big = wo1_big * mag
ang_bins = []
for i in range(0, self.num_ang_bins):
ang_bins.append(F.adaptive_avg_pool2d((bo0_big == i).float() * wo0_big, (1,1)))
ang_bins = torch.cat(ang_bins,1).view(-1,1,self.num_ang_bins)
ang_bins = self.angular_smooth(ang_bins)
values, indices = ang_bins.view(-1,self.num_ang_bins).max(1)
angle = -((2. * float(np.pi) * indices.float() / float(self.num_ang_bins)) - float(math.pi))
if return_rot_matrix:
return self.get_rotation_matrix(angle)
return angle
class NMS2d(nn.Module):
def __init__(self, kernel_size = 3, threshold = 0):
super(NMS2d, self).__init__()
self.MP = nn.MaxPool2d(kernel_size, stride=1, return_indices=False, padding = kernel_size/2)
self.eps = 1e-5
self.th = threshold
return
def forward(self, x):
#local_maxima = self.MP(x)
if self.th > self.eps:
return x * (x > self.th).float() * ((x + self.eps - self.MP(x)) > 0).float()
else:
return ((x - self.MP(x) + self.eps) > 0).float() * x
class NMS3d(nn.Module):
def __init__(self, kernel_size = 3, threshold = 0):
super(NMS3d, self).__init__()
self.MP = nn.MaxPool3d(kernel_size, stride=1, return_indices=False, padding = (0, int(kernel_size/2), int(kernel_size/2)))
self.eps = 1e-5
self.th = threshold
return
def forward(self, x):
#local_maxima = self.MP(x)
if self.th > self.eps:
return x * (x > self.th).float() * ((x + self.eps - self.MP(x)) > 0).float()
else:
return ((x - self.MP(x) + self.eps) > 0).float() * x
class NMS3dAndComposeA(nn.Module):
def __init__(self, w = 0, h = 0, kernel_size = 3, threshold = 0, scales = None, border = 3, mrSize = 1.0):
super(NMS3dAndComposeA, self).__init__()
self.eps = 1e-7
self.ks = 3
self.th = threshold
self.cube_idxs = []
self.border = border
self.mrSize = mrSize
self.beta = 1.0
self.grid_ones = Variable(torch.ones(3,3,3,3), requires_grad=False)
self.NMS3d = NMS3d(kernel_size, threshold)
if (w > 0) and (h > 0):
self.spatial_grid = generate_2dgrid(h, w, False).view(1, h, w,2).permute(3,1, 2, 0)
self.spatial_grid = Variable(self.spatial_grid)
else:
self.spatial_grid = None
return
def forward(self, low, cur, high, num_features = 0, octaveMap = None, scales = None):
assert low.size() == cur.size() == high.size()
#Filter responce map
self.is_cuda = low.is_cuda;
resp3d = torch.cat([low,cur,high], dim = 1)
mrSize_border = int(self.mrSize);
if octaveMap is not None:
nmsed_resp = zero_response_at_border(self.NMS3d(resp3d.unsqueeze(1)).squeeze(1)[:,1:2,:,:], mrSize_border) * (1. - octaveMap.float())
else:
nmsed_resp = zero_response_at_border(self.NMS3d(resp3d.unsqueeze(1)).squeeze(1)[:,1:2,:,:], mrSize_border)
num_of_nonzero_responces = (nmsed_resp > 0).sum().data.item()
if (num_of_nonzero_responces == 0):
return None,None,None
if octaveMap is not None:
octaveMap = (octaveMap.float() + nmsed_resp.float()).byte()
nmsed_resp = nmsed_resp.view(-1)
if (num_features > 0) and (num_features < num_of_nonzero_responces):
nmsed_resp, idxs = torch.topk(nmsed_resp, k = num_features);
else:
# idxs = nmsed_resp.data.nonzero().squeeze()
idxs = torch.nonzero(nmsed_resp.data).squeeze()
nmsed_resp = nmsed_resp[idxs]
#Get point coordinates grid
if type(scales) is not list:
self.grid = generate_3dgrid(3,self.ks,self.ks)
else:
self.grid = generate_3dgrid(scales,self.ks,self.ks)
self.grid = Variable(self.grid.t().contiguous().view(3,3,3,3), requires_grad=False)
if self.spatial_grid is None:
self.spatial_grid = generate_2dgrid(low.size(2), low.size(3), False).view(1, low.size(2), low.size(3),2).permute(3,1, 2, 0)
self.spatial_grid = Variable(self.spatial_grid)
if self.is_cuda:
self.spatial_grid = self.spatial_grid.cuda()
self.grid_ones = self.grid_ones.cuda()
self.grid = self.grid.cuda()
#residual_to_patch_center
sc_y_x = F.conv2d(resp3d, self.grid,
padding = 1) / (F.conv2d(resp3d, self.grid_ones, padding = 1) + 1e-8)
##maxima coords
sc_y_x[0,1:,:,:] = sc_y_x[0,1:,:,:] + self.spatial_grid[:,:,:,0]
sc_y_x = sc_y_x.view(3,-1).t()
sc_y_x = sc_y_x[idxs,:]
if len(sc_y_x.shape) == 1:
sc_y_x = sc_y_x.unsqueeze(0)
min_size = float(min((cur.size(2)), cur.size(3)))
sc_y_x[:,0] = sc_y_x[:,0] / min_size
sc_y_x[:,1] = sc_y_x[:,1] / float(cur.size(2))
sc_y_x[:,2] = sc_y_x[:,2] / float(cur.size(3))
return nmsed_resp, sc_y_x2LAFs(sc_y_x), octaveMap
| 13,280 | 43.27 | 145 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/HardNet.py | import sys
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch.autograd import Variable
import torch.backends.cudnn as cudnn
import time
import os
import math
import numpy as np
class L2Norm(nn.Module):
def __init__(self):
super(L2Norm,self).__init__()
self.eps = 1e-8
def forward(self, x):
norm = torch.sqrt(torch.sum(x * x, dim = 1) + self.eps)
x= x / norm.unsqueeze(-1).expand_as(x)
return x
class L1Norm(nn.Module):
def __init__(self):
super(L1Norm,self).__init__()
self.eps = 1e-10
def forward(self, x):
norm = torch.sum(torch.abs(x), dim = 1) + self.eps
x= x / norm.expand_as(x)
return x
class HardTFeatNet(nn.Module):
"""TFeat model definition
"""
def __init__(self, sm):
super(HardTFeatNet, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 32, kernel_size=7),
nn.Tanh(),
nn.MaxPool2d(kernel_size=2, stride=2),
nn.Conv2d(32, 64, kernel_size=6),
nn.Tanh()
)
self.classifier = nn.Sequential(
nn.Dropout(0.1),
nn.Conv2d(64, 128, kernel_size=8),
nn.Tanh())
self.SIFT = sm
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1)
sp = torch.std(flat, dim=1) + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def forward(self, input):
x_features = self.features(self.input_norm(input))
x = x_features.view(x_features.size(0), -1)
x = self.classifier(x_features)
return L2Norm()(x.view(x.size(0), -1))
class HardNet(nn.Module):
"""HardNet model definition
"""
def __init__(self):
super(HardNet, self).__init__()
self.features = nn.Sequential( # 32 x 32 x 1
nn.Conv2d(1, 32, kernel_size=3, padding=1, bias = False), # 32 x 32 x 32
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, padding=1, bias = False), # 32 x 32 x 32
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False), # 16 x 16 x 64
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, padding=1, bias = False), # 16 x 16 x 64
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 128, kernel_size=3, stride=2,padding=1, bias = False), # 8 x 8 x 128
nn.BatchNorm2d(128, affine=False),
nn.ReLU(),
nn.Conv2d(128, 128, kernel_size=3, padding=1, bias = False), # 8 x 8 x 128
nn.BatchNorm2d(128, affine=False),
nn.ReLU(),
nn.Dropout(0.1),
nn.Conv2d(128, 128, kernel_size=8, bias = False), # 1 x 1 x 128
nn.BatchNorm2d(128, affine=False),
)
#self.features.apply(weights_init)
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1)
sp = torch.std(flat, dim=1) + 1e-7
return (x - mp.detach().unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.detach().unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def forward(self, input):
x_features = self.features(self.input_norm(input))
x = x_features.view(x_features.size(0), -1)
return L2Norm()(x) | 3,589 | 34.544554 | 155 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/HessianAffinePatches.py | import torch
import torch.nn as nn
import numpy as np
from torch.autograd import Variable
from SparseImgRepresenter import ScaleSpaceAffinePatchExtractor
from LAF import denormalizeLAFs, LAFs2ell
from Utils import line_prepender
from architectures import AffNetFast, OriNetFast
from skimage.filters import unsharp_mask
import math
from HardNet import HardNet
def init_hardnet(model_weights, use_cuda=True):
descriptor = HardNet()
hncheckpoint = torch.load(model_weights, map_location=torch.device('cpu'))
descriptor.load_state_dict(hncheckpoint['state_dict'])
descriptor.eval()
if use_cuda:
descriptor = descriptor.cuda()
return descriptor
def init_affnet(weightd_fname, patch_size=32, use_cuda=True):
AffNetPix = AffNetFast(PS=patch_size)
checkpoint = torch.load(weightd_fname, map_location=torch.device('cpu'))
AffNetPix.load_state_dict(checkpoint['state_dict'])
AffNetPix.eval()
if use_cuda:
AffNetPix.cuda()
return AffNetPix
def init_orinet(o_fname, patch_size=32, use_cuda=True):
ONet = OriNetFast(PS=patch_size)
checkpoint = torch.load(o_fname, map_location=torch.device('cpu'))
ONet.load_state_dict(checkpoint['state_dict'])
ONet.eval()
if use_cuda:
ONet.cuda()
return ONet
def LAF2ell(LAF):
LAF = np.array(LAF)
u, s, _ = np.linalg.svd(LAF[:2, :2])
angle = math.atan2(u[1, 0], u[0, 0])
return np.array([LAF[0, 2], LAF[1, 2], s[0], s[1], angle])
def extract_hesaff_patches(img_detect,
num_features=400,
nlevels=10,
# mrSize=12,
mrSize=12,
# border=5,
border=5,
num_Baum_iters=26,
patch_size=48,
# init_sigma=1.6,
init_sigma = 200,
unsharp_radius=1,
unsharp_amount=25,
patch_scale=1,
RespNet=None,
OriNet=None,
AffNet=None,
use_cuda=True):
HA = ScaleSpaceAffinePatchExtractor(nlevels=int(nlevels),
mrSize=mrSize,
num_features=int(num_features),
border=border,
num_Baum_iters=num_Baum_iters,
patch_size=patch_size,
init_sigma=init_sigma,
AffNet=AffNet,
OriNet=OriNet,
RespNet=RespNet,
patch_scale=patch_scale)
var_image_detect = torch.autograd.Variable(torch.from_numpy(np.array(img_detect).astype(np.float32)))
var_image_detect = var_image_detect.view(1, 1, var_image_detect.size(0),var_image_detect.size(1))
if use_cuda:
HA = HA.cuda()
var_image_detect = var_image_detect.cuda()
LAFs, resp = HA(var_image_detect)
patches = HA.extract_patches_from_pyr(LAFs, patch_size)
if use_cuda:
patches = patches.cpu()
patches = patches[:, 0, ...].detach().numpy()
# print(unsharp_radius)
if (unsharp_radius is not None) and (unsharp_amount is not None):
for i in range(patches.shape[0]):
patches[i,...] = 255*unsharp_mask(patches[i,...]/255, radius=unsharp_radius, amount=unsharp_amount)
LAFs = LAFs.cpu().detach().numpy()
ells = [None] * LAFs.shape[0]
for i in range(len(ells)):
ells[i] = LAF2ell(LAFs[i, ...])
return patches, ells
| 3,848 | 36.735294 | 111 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/LAF.py | import numpy as np
import matplotlib.pyplot as plt
from copy import deepcopy
from scipy.spatial.distance import cdist
from numpy.linalg import inv
from scipy.linalg import schur, sqrtm
import torch
from torch.autograd import Variable
import torch.nn.functional as F
##########numpy
def invSqrt(a,b,c):
eps = 1e-12
mask = (b != 0)
r1 = mask * (c - a) / (2. * b + eps)
t1 = np.sign(r1) / (np.abs(r1) + np.sqrt(1. + r1*r1));
r = 1.0 / np.sqrt( 1. + t1*t1)
t = t1*r;
r = r * mask + 1.0 * (1.0 - mask);
t = t * mask;
x = 1. / np.sqrt( r*r*a - 2*r*t*b + t*t*c)
z = 1. / np.sqrt( t*t*a + 2*r*t*b + r*r*c)
d = np.sqrt( x * z)
x = x / d
z = z / d
new_a = r*r*x + t*t*z
new_b = -r*t*x + t*r*z
new_c = t*t*x + r*r *z
return new_a, new_b, new_c
def LAFs2ellT(LAFs):
ellipses = torch.zeros((len(LAFs),5))
if LAFs.is_cuda:
ellipses = ellipses.cuda()
scale = torch.sqrt(LAFs[:,0,0]*LAFs[:,1,1] - LAFs[:,0,1]*LAFs[:,1, 0] + 1e-10)#.view(-1,1,1)
unscaled_As = LAFs[:,0:2,0:2] / scale.view(-1,1,1).repeat(1,2,2)
u, W, v = bsvd2x2(unscaled_As)
#W = 1.0 / ((W *scale.view(-1,1,1).repeat(1,2,2))**2)
W[:,0,0] = 1.0 / (scale*scale*W[:,0,0]**2 )
W[:,1,1] = 1.0 / (scale*scale*W[:,1,1]**2 )
A = torch.bmm(torch.bmm(u,W), u.permute(0,2,1))
ellipses[:,0] = LAFs[:,0,2]
ellipses[:,1] = LAFs[:,1,2]
ellipses[:,2] = A[:,0,0]
ellipses[:,3] = A[:,0,1]
ellipses[:,4] = A[:,1,1]
return ellipses
def invSqrtTorch(a,b,c):
eps = 1e-12
mask = (b != 0).float()
r1 = mask * (c - a) / (2. * b + eps)
t1 = torch.sign(r1) / (torch.abs(r1) + torch.sqrt(1. + r1*r1));
r = 1.0 / torch.sqrt( 1. + t1*t1)
t = t1*r;
r = r * mask + 1.0 * (1.0 - mask);
t = t * mask;
x = 1. / torch.sqrt( r*r*a - 2.0*r*t*b + t*t*c)
z = 1. / torch.sqrt( t*t*a + 2.0*r*t*b + r*r*c)
d = torch.sqrt( x * z)
x = x / d
z = z / d
new_a = r*r*x + t*t*z
new_b = -r*t*x + t*r*z
new_c = t*t*x + r*r *z
return new_a, new_b, new_c,
def ells2LAFsT(ells):
LAFs = torch.zeros((len(ells), 2,3))
LAFs[:,0,2] = ells[:,0]
LAFs[:,1,2] = ells[:,1]
a = ells[:,2]
b = ells[:,3]
c = ells[:,4]
sc = torch.sqrt(torch.sqrt(a*c - b*b + 1e-12))
ia,ib,ic = invSqrtTorch(a,b,c) #because sqrtm returns ::-1, ::-1 matrix, don`t know why
A = torch.cat([torch.cat([(ia/sc).view(-1,1,1), (ib/sc).view(-1,1,1)], dim = 2),
torch.cat([(ib/sc).view(-1,1,1), (ic/sc).view(-1,1,1)], dim = 2)], dim = 1)
sc = torch.sqrt(torch.abs(A[:,0,0] * A[:,1,1] - A[:,1,0] * A[:,0,1]))
LAFs[:,0:2,0:2] = rectifyAffineTransformationUpIsUp(A / sc.view(-1,1,1).repeat(1,2,2)) * sc.view(-1,1,1).repeat(1,2,2)
return LAFs
def LAFs_to_H_frames(aff_pts):
H3_x = torch.Tensor([0, 0, 1 ]).unsqueeze(0).unsqueeze(0).repeat(aff_pts.size(0),1,1);
if aff_pts.is_cuda:
H3_x = H3_x.cuda()
return torch.cat([aff_pts, H3_x], dim = 1)
def checkTouchBoundary(LAFs):
pts = torch.FloatTensor([[-1, -1, 1, 1], [-1, 1, -1, 1], [1, 1, 1, 1]]).unsqueeze(0)
if LAFs.is_cuda:
pts = pts.cuda()
out_pts = torch.bmm(LAFs_to_H_frames(LAFs),pts.expand(LAFs.size(0),3,4))[:,:2,:]
good_points = ~(((out_pts > 1.0) + (out_pts < 0.0)).sum(dim=1).sum(dim=1) > 0)
return good_points
def bsvd2x2(As):
Su = torch.bmm(As,As.permute(0,2,1))
phi = 0.5 * torch.atan2(Su[:,0,1] + Su[:,1,0] + 1e-12, Su[:,0,0] - Su[:,1,1] + 1e-12)
Cphi = torch.cos(phi)
Sphi = torch.sin(phi)
U = torch.zeros(As.size(0),2,2)
if As.is_cuda:
U = U.cuda()
U[:,0,0] = Cphi
U[:,1,1] = Cphi
U[:,0,1] = -Sphi
U[:,1,0] = Sphi
Sw = torch.bmm(As.permute(0,2,1),As)
theta = 0.5 * torch.atan2(Sw[:,0,1] + Sw[:,1,0] + 1e-12, Sw[:,0,0] - Sw[:,1,1] + 1e-12)
Ctheta = torch.cos(theta)
Stheta = torch.sin(theta)
W = torch.zeros(As.size(0),2,2)
if As.is_cuda:
W = W.cuda()
W[:,0,0] = Ctheta
W[:,1,1] = Ctheta
W[:,0,1] = -Stheta
W[:,1,0] = Stheta
SUsum = Su[:,0,0] + Su[:,1,1]
SUdif = torch.sqrt((Su[:,0,0] - Su[:,1,1])**2 + 4 * Su[:,0,1]*Su[:,1,0] + 1e-12)
if As.is_cuda:
SIG = torch.zeros(As.size(0),2,2).cuda()
SIG[:,0,0] = torch.sqrt((SUsum+SUdif)/2.0)
SIG[:,1,1] = torch.sqrt((SUsum-SUdif)/2.0)
else:
SIG = torch.zeros(As.size(0),2,2)
SIG[:,0,0] = torch.sqrt((SUsum+SUdif)/2.0)
SIG[:,1,1] = torch.sqrt((SUsum-SUdif)/2.0)
S = torch.bmm(torch.bmm(U.permute(0,2,1),As),W)
C = torch.sign(S)
C[:,0,1] = 0
C[:,1,0] = 0
V = torch.bmm(W,C)
return (U,SIG,V)
def getLAFelongation(LAFs):
u,s,v = bsvd2x2(LAFs[:,:2,:2])
return torch.max(s[:,0,0],s[:,1,1]) / torch.min(s[:,0,0],s[:,1,1])
def getNumCollapsed(LAFs, th = 10.0):
el = getLAFelongation(LAFs)
return (el > th).float().sum()
def Ell2LAF(ell):
A23 = np.zeros((2,3))
A23[0,2] = ell[0]
A23[1,2] = ell[1]
a = ell[2]
b = ell[3]
c = ell[4]
sc = np.sqrt(np.sqrt(a*c - b*b))
ia,ib,ic = invSqrt(a,b,c) #because sqrtm returns ::-1, ::-1 matrix, don`t know why
A = np.array([[ia, ib], [ib, ic]]) / sc
sc = np.sqrt(A[0,0] * A[1,1] - A[1,0] * A[0,1])
A23[0:2,0:2] = rectifyAffineTransformationUpIsUp(A / sc) * sc
return A23
def rectifyAffineTransformationUpIsUp_np(A):
det = np.sqrt(np.abs(A[0,0]*A[1,1] - A[1,0]*A[0,1] + 1e-10))
b2a2 = np.sqrt(A[0,1] * A[0,1] + A[0,0] * A[0,0])
A_new = np.zeros((2,2))
A_new[0,0] = b2a2 / det
A_new[0,1] = 0
A_new[1,0] = (A[1,1]*A[0,1]+A[1,0]*A[0,0])/(b2a2*det)
A_new[1,1] = det / b2a2
return A_new
def ells2LAFs(ells):
LAFs = np.zeros((len(ells), 2,3))
for i in range(len(ells)):
LAFs[i,:,:] = Ell2LAF(ells[i,:])
return LAFs
def LAF2pts(LAF, n_pts = 50):
a = np.linspace(0, 2*np.pi, n_pts);
x = [0]
x.extend(list(np.sin(a)))
x = np.array(x).reshape(1,-1)
y = [0]
y.extend(list(np.cos(a)))
y = np.array(y).reshape(1,-1)
HLAF = np.concatenate([LAF, np.array([0,0,1]).reshape(1,3)])
H_pts =np.concatenate([x,y,np.ones(x.shape)])
H_pts_out = np.transpose(np.matmul(HLAF, H_pts))
H_pts_out[:,0] = H_pts_out[:,0] / H_pts_out[:, 2]
H_pts_out[:,1] = H_pts_out[:,1] / H_pts_out[:, 2]
return H_pts_out[:,0:2]
def convertLAFs_to_A23format(LAFs):
sh = LAFs.shape
if (len(sh) == 3) and (sh[1] == 2) and (sh[2] == 3): # n x 2 x 3 classical [A, (x;y)] matrix
work_LAFs = LAFs.clone().detach() # deepcopy(LAFs)
elif (len(sh) == 2) and (sh[1] == 7): #flat format, x y scale a11 a12 a21 a22
work_LAFs = np.zeros((sh[0], 2,3))
work_LAFs[:,0,2] = LAFs[:,0]
work_LAFs[:,1,2] = LAFs[:,1]
work_LAFs[:,0,0] = LAFs[:,2] * LAFs[:,3]
work_LAFs[:,0,1] = LAFs[:,2] * LAFs[:,4]
work_LAFs[:,1,0] = LAFs[:,2] * LAFs[:,5]
work_LAFs[:,1,1] = LAFs[:,2] * LAFs[:,6]
elif (len(sh) == 2) and (sh[1] == 6): #flat format, x y s*a11 s*a12 s*a21 s*a22
work_LAFs = np.zeros((sh[0], 2,3))
work_LAFs[:,0,2] = LAFs[:,0]
work_LAFs[:,1,2] = LAFs[:,1]
work_LAFs[:,0,0] = LAFs[:,2]
work_LAFs[:,0,1] = LAFs[:,3]
work_LAFs[:,1,0] = LAFs[:,4]
work_LAFs[:,1,1] = LAFs[:,5]
else:
print ('Unknown LAF format')
return None
return work_LAFs
def LAFs2ell(in_LAFs):
LAFs = convertLAFs_to_A23format(in_LAFs)
ellipses = np.zeros((len(LAFs),5))
for i in range(len(LAFs)):
# LAF = deepcopy(LAFs[i,:,:])
LAF = LAFs[i,:,:].clone()
scale = np.sqrt(LAF[0,0]*LAF[1,1] - LAF[0,1]*LAF[1, 0] + 1e-10)
u, W, v = np.linalg.svd(LAF[0:2,0:2] / scale, full_matrices=True)
W[0] = 1. / (W[0]*W[0]*scale*scale)
W[1] = 1. / (W[1]*W[1]*scale*scale)
A = np.matmul(np.matmul(u, np.diag(W)), u.transpose())
ellipses[i,0] = LAF[0,2]
ellipses[i,1] = LAF[1,2]
ellipses[i,2] = A[0,0]
ellipses[i,3] = A[0,1]
ellipses[i,4] = A[1,1]
return ellipses
def visualize_LAFs(img, LAFs, color = 'r', show = False, save_to = None):
work_LAFs = convertLAFs_to_A23format(LAFs)
try:
plt.close('all')
except:
pass
plt.figure()
plt.imshow(255 - img)
if work_LAFs is None:
work_LAFs = []
for i in range(len(work_LAFs)):
ell = LAF2pts(work_LAFs[i,:,:])
plt.plot( ell[:,0], ell[:,1], color)
if show:
plt.show()
if save_to is not None:
plt.savefig(save_to)
return
####pytorch
def get_normalized_affine_shape(tilt, angle_in_radians):
assert tilt.size(0) == angle_in_radians.size(0)
num = tilt.size(0)
tilt_A = Variable(torch.eye(2).view(1,2,2).repeat(num,1,1))
if tilt.is_cuda:
tilt_A = tilt_A.cuda()
tilt_A[:,0,0] = tilt.view(-1);
rotmat = get_rotation_matrix(angle_in_radians)
out_A = rectifyAffineTransformationUpIsUp(torch.bmm(rotmat, torch.bmm(tilt_A, rotmat)))
#re_scale = (1.0/torch.sqrt((out_A **2).sum(dim=1).max(dim=1)[0])) #It is heuristic to for keeping scale change small
#re_scale = (0.5 + 0.5/torch.sqrt((out_A **2).sum(dim=1).max(dim=1)[0])) #It is heuristic to for keeping scale change small
return out_A# * re_scale.view(-1,1,1).expand(num,2,2)
def get_rotation_matrix(angle_in_radians):
angle_in_radians = angle_in_radians.view(-1, 1, 1);
sin_a = torch.sin(angle_in_radians)
cos_a = torch.cos(angle_in_radians)
A1_x = torch.cat([cos_a, sin_a], dim = 2)
A2_x = torch.cat([-sin_a, cos_a], dim = 2)
transform = torch.cat([A1_x,A2_x], dim = 1)
return transform
def rectifyAffineTransformationUpIsUp(A):
det = torch.sqrt(torch.abs(A[:,0,0]*A[:,1,1] - A[:,1,0]*A[:,0,1] + 1e-10))
b2a2 = torch.sqrt(A[:,0,1] * A[:,0,1] + A[:,0,0] * A[:,0,0])
A1_ell = torch.cat([(b2a2 / det).contiguous().view(-1,1,1), 0 * det.view(-1,1,1)], dim = 2)
A2_ell = torch.cat([((A[:,1,1]*A[:,0,1]+A[:,1,0]*A[:,0,0])/(b2a2*det)).contiguous().view(-1,1,1),
(det / b2a2).contiguous().view(-1,1,1)], dim = 2)
return torch.cat([A1_ell, A2_ell], dim = 1)
def rectifyAffineTransformationUpIsUpFullyConv(A):#A is (n,4,h,w) tensor
det = torch.sqrt(torch.abs(A[:,0:1,:,:]*A[:,3:4,:,:] - A[:,1:2,:,:]*A[:,2:3,:,:] + 1e-10))
b2a2 = torch.sqrt(A[:,1:2,:,:] * A[:,1:2,:,:] + A[:,0:1,:,:] * A[:,0:1,:,:])
return torch.cat([(b2a2 / det).contiguous(),0 * det.contiguous(),
(A[:,3:4,:,:]*A[:,1:2,:,:]+A[:,2:3,:,:]*A[:,0:1,:,:])/(b2a2*det),(det / b2a2).contiguous()], dim = 1)
def abc2A(a,b,c, normalize = False):
A1_ell = torch.cat([a.view(-1,1,1), b.view(-1,1,1)], dim = 2)
A2_ell = torch.cat([b.view(-1,1,1), c.view(-1,1,1)], dim = 2)
return torch.cat([A1_ell, A2_ell], dim = 1)
def angles2A(angles):
cos_a = torch.cos(angles).view(-1, 1, 1)
sin_a = torch.sin(angles).view(-1, 1, 1)
A1_ang = torch.cat([cos_a, sin_a], dim = 2)
A2_ang = torch.cat([-sin_a, cos_a], dim = 2)
return torch.cat([A1_ang, A2_ang], dim = 1)
def generate_patch_grid_from_normalized_LAFs(LAFs, w, h, PS):
num_lafs = LAFs.size(0)
min_size = min(h,w)
coef = torch.ones(1,2,3) * min_size
coef[0,0,2] = w
coef[0,1,2] = h
if LAFs.is_cuda:
coef = coef.cuda()
grid = F.affine_grid(LAFs * Variable(coef.expand(num_lafs,2,3)), torch.Size((num_lafs,1,PS,PS)))
grid[:,:,:,0] = 2.0 * grid[:,:,:,0] / float(w) - 1.0
grid[:,:,:,1] = 2.0 * grid[:,:,:,1] / float(h) - 1.0
return grid
def batched_grid_apply(img, grid, batch_size = 32):
n_patches = len(grid)
if n_patches > batch_size:
bs = batch_size
n_batches = int(n_patches / bs + 1)
for batch_idx in range(n_batches):
st = batch_idx * bs
if batch_idx == n_batches - 1:
if (batch_idx + 1) * bs > n_patches:
end = n_patches
else:
end = (batch_idx + 1) * bs
else:
end = (batch_idx + 1) * bs
if st >= end:
continue
if batch_idx == 0:
if img.size(0) != grid.size(0):
first_batch_out = F.grid_sample(img.expand(end - st, img.size(1), img.size(2), img.size(3)), grid[st:end, :,:,:])# kwargs)
else:
first_batch_out = F.grid_sample(img[st:end], grid[st:end, :,:,:])# kwargs)
out_size = torch.Size([n_patches] + list(first_batch_out.size()[1:]))
out = torch.zeros(out_size);
if img.is_cuda:
out = out.cuda()
out[st:end] = first_batch_out
else:
if img.size(0) != grid.size(0):
out[st:end,:,:] = F.grid_sample(img.expand(end - st, img.size(1), img.size(2), img.size(3)), grid[st:end, :,:,:])
else:
out[st:end,:,:] = F.grid_sample(img[st:end], grid[st:end, :,:,:])
return out
else:
if img.size(0) != grid.size(0):
return F.grid_sample(img.expand(grid.size(0), img.size(1), img.size(2), img.size(3)), grid)
else:
return F.grid_sample(img, grid)
def extract_patches(img, LAFs, PS = 32, bs = 32):
w = img.size(3)
h = img.size(2)
ch = img.size(1)
grid = generate_patch_grid_from_normalized_LAFs(LAFs, float(w),float(h), PS)
if bs is None:
return torch.nn.functional.grid_sample(img.expand(grid.size(0), ch, h, w), grid)
else:
return batched_grid_apply(img, grid, bs)
def get_pyramid_inverted_index_for_LAFs(LAFs, PS, sigmas):
return
def extract_patches_from_pyramid_with_inv_index(scale_pyramid, pyr_inv_idxs, LAFs, PS = 19):
patches = torch.zeros(LAFs.size(0),scale_pyramid[0][0].size(1), PS, PS)
if LAFs.is_cuda:
patches = patches.cuda()
patches = Variable(patches)
if pyr_inv_idxs is not None:
for i in range(len(scale_pyramid)):
for j in range(len(scale_pyramid[i])):
cur_lvl_idxs = pyr_inv_idxs[i][j]
if cur_lvl_idxs is None:
continue
cur_lvl_idxs = cur_lvl_idxs.view(-1)
#print i,j,cur_lvl_idxs.shape
patches[cur_lvl_idxs,:,:,:] = extract_patches(scale_pyramid[i][j], LAFs[cur_lvl_idxs, :,:], PS, 32 )
return patches
def get_inverted_pyr_index(scale_pyr, pyr_idxs, level_idxs):
pyr_inv_idxs = []
### Precompute octave inverted indexes
for i in range(len(scale_pyr)):
pyr_inv_idxs.append([])
cur_idxs = pyr_idxs == i #torch.nonzero((pyr_idxs == i).data)
for j in range(0, len(scale_pyr[i])):
cur_lvl_idxs = torch.nonzero(((level_idxs == j) * cur_idxs).data)
if cur_lvl_idxs.size(0) == 0:
pyr_inv_idxs[i].append(None)
else:
pyr_inv_idxs[i].append(cur_lvl_idxs.squeeze())
return pyr_inv_idxs
def denormalizeLAFs(LAFs, w, h):
w = float(w)
h = float(h)
num_lafs = LAFs.size(0)
min_size = min(h,w)
coef = torch.ones(1,2,3).float() * min_size
coef[0,0,2] = w
coef[0,1,2] = h
if LAFs.is_cuda:
coef = coef.cuda()
return Variable(coef.expand(num_lafs,2,3)) * LAFs
def normalizeLAFs(LAFs, w, h):
w = float(w)
h = float(h)
num_lafs = LAFs.size(0)
min_size = min(h,w)
coef = torch.ones(1,2,3).float() / min_size
coef[0,0,2] = 1.0 / w
coef[0,1,2] = 1.0 / h
if LAFs.is_cuda:
coef = coef.cuda()
return Variable(coef.expand(num_lafs,2,3)) * LAFs
def sc_y_x2LAFs(sc_y_x):
base_LAF = torch.eye(2).float().unsqueeze(0).expand(sc_y_x.size(0),2,2)
if sc_y_x.is_cuda:
base_LAF = base_LAF.cuda()
base_A = Variable(base_LAF, requires_grad=False)
A = sc_y_x[:,:1].unsqueeze(1).expand_as(base_A) * base_A
LAFs = torch.cat([A,
torch.cat([sc_y_x[:,2:].unsqueeze(-1),
sc_y_x[:,1:2].unsqueeze(-1)], dim=1)], dim = 2)
return LAFs
def sc_y_x_and_A2LAFs(sc_y_x, A_flat):
base_A = A_flat.view(-1,2,2)
A = sc_y_x[:,:1].unsqueeze(1).expand_as(base_A) * base_A
LAFs = torch.cat([A,
torch.cat([sc_y_x[:,2:].unsqueeze(-1),
sc_y_x[:,1:2].unsqueeze(-1)], dim=1)], dim = 2)
return LAFs
def get_LAFs_scales(LAFs):
return torch.sqrt(torch.abs(LAFs[:,0,0] *LAFs[:,1,1] - LAFs[:,0,1] * LAFs[:,1,0]) + 1e-12)
def get_pyramid_and_level_index_for_LAFs(dLAFs, sigmas, pix_dists, PS):
scales = get_LAFs_scales(dLAFs);
needed_sigmas = scales / PS;
sigmas_full_list = []
level_idxs_full = []
oct_idxs_full = []
for oct_idx in range(len(sigmas)):
sigmas_full_list = sigmas_full_list + list(np.array(sigmas[oct_idx])*np.array(pix_dists[oct_idx]))
oct_idxs_full = oct_idxs_full + [oct_idx]*len(sigmas[oct_idx])
level_idxs_full = level_idxs_full + list(range(0,len(sigmas[oct_idx])))
oct_idxs_full = torch.LongTensor(oct_idxs_full)
level_idxs_full = torch.LongTensor(level_idxs_full)
closest_imgs = cdist(np.array(sigmas_full_list).reshape(-1,1), needed_sigmas.data.cpu().numpy().reshape(-1,1)).argmin(axis = 0)
closest_imgs = torch.from_numpy(closest_imgs)
if dLAFs.is_cuda:
closest_imgs = closest_imgs.cuda()
oct_idxs_full = oct_idxs_full.cuda()
level_idxs_full = level_idxs_full.cuda()
return Variable(oct_idxs_full[closest_imgs]), Variable(level_idxs_full[closest_imgs])
| 17,704 | 36.352321 | 142 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/SparseImgRepresenter.py | import torch
import torch.nn as nn
import numpy as np
import math
import torch.nn.functional as F
from torch.autograd import Variable
from copy import deepcopy
from Utils import GaussianBlur, batch_eig2x2, line_prepender, batched_forward
from LAF import LAFs2ell,abc2A, angles2A, generate_patch_grid_from_normalized_LAFs, extract_patches, get_inverted_pyr_index, denormalizeLAFs, extract_patches_from_pyramid_with_inv_index, rectifyAffineTransformationUpIsUp, ells2LAFs
from LAF import get_pyramid_and_level_index_for_LAFs, normalizeLAFs, checkTouchBoundary
from HandCraftedModules import HessianResp, AffineShapeEstimator, OrientationDetector, ScalePyramid, NMS3dAndComposeA
import time
class ScaleSpaceAffinePatchExtractor(nn.Module):
def __init__(self,
border = 16,
num_features = 500,
patch_size = 32,
mrSize = 3.0,
nlevels = 3,
num_Baum_iters = 0,
init_sigma = 1.6,
th = None,
patch_scale = 1,
RespNet = None, OriNet = None, AffNet = None):
super(ScaleSpaceAffinePatchExtractor, self).__init__()
self.mrSize = mrSize
self.PS = patch_size
self.b = border;
self.num = num_features
self.nlevels = nlevels
self.num_Baum_iters = num_Baum_iters
self.init_sigma = init_sigma
self.th = th;
self.patch_scale = patch_scale
if th is not None:
self.num = -1
else:
self.th = 0
if RespNet is not None:
self.RespNet = RespNet
else:
self.RespNet = HessianResp()
if OriNet is not None:
self.OriNet = OriNet
else:
self.OriNet= OrientationDetector(patch_size = 19);
if AffNet is not None:
self.AffNet = AffNet
else:
self.AffNet = AffineShapeEstimator(patch_size = 19)
self.ScalePyrGen = ScalePyramid(nLevels = self.nlevels, init_sigma = self.init_sigma, border = self.b)
return
def multiScaleDetector(self,x, num_features = 0):
t = time.time()
self.scale_pyr, self.sigmas, self.pix_dists = self.ScalePyrGen(x)
### Detect keypoints in scale space
aff_matrices = []
top_responces = []
pyr_idxs = []
level_idxs = []
det_t = 0
nmst = 0
for oct_idx in range(len(self.sigmas)):
#print oct_idx
octave = self.scale_pyr[oct_idx]
sigmas_oct = self.sigmas[oct_idx]
pix_dists_oct = self.pix_dists[oct_idx]
low = None
cur = None
high = None
octaveMap = (self.scale_pyr[oct_idx][0] * 0).byte()
nms_f = NMS3dAndComposeA(w = octave[0].size(3),
h = octave[0].size(2),
border = self.b, mrSize = self.mrSize)
for level_idx in range(1, len(octave)-1):
if cur is None:
low = torch.clamp(self.RespNet(octave[level_idx - 1], (sigmas_oct[level_idx - 1 ])) - self.th, min = 0)
else:
low = cur
if high is None:
cur = torch.clamp(self.RespNet(octave[level_idx ], (sigmas_oct[level_idx ])) - self.th, min = 0)
else:
cur = high
high = torch.clamp(self.RespNet(octave[level_idx + 1], (sigmas_oct[level_idx + 1 ])) - self.th, min = 0)
top_resp, aff_matrix, octaveMap_current = nms_f(low, cur, high,
num_features = num_features,
octaveMap = octaveMap,
scales = sigmas_oct[level_idx - 1:level_idx + 2])
if top_resp is None:
continue
if top_resp.dim() == 0:
top_resp = torch.unsqueeze(top_resp, 0)
octaveMap = octaveMap_current
aff_matrices.append(aff_matrix), top_responces.append(top_resp)
pyr_id = Variable(oct_idx * torch.ones(aff_matrix.size(0)))
lev_id = Variable((level_idx - 1) * torch.ones(aff_matrix.size(0))) #prevBlur
if x.is_cuda:
pyr_id = pyr_id.cuda()
lev_id = lev_id.cuda()
pyr_idxs.append(pyr_id)
level_idxs.append(lev_id)
all_responses = torch.cat(top_responces, dim = 0)
aff_m_scales = torch.cat(aff_matrices,dim = 0)
pyr_idxs_scales = torch.cat(pyr_idxs,dim = 0)
level_idxs_scale = torch.cat(level_idxs, dim = 0)
if (num_features > 0) and (num_features < all_responses.size(0)):
all_responses, idxs = torch.topk(all_responses, k = num_features);
LAFs = torch.index_select(aff_m_scales, 0, idxs)
final_pyr_idxs = pyr_idxs_scales[idxs]
final_level_idxs = level_idxs_scale[idxs]
else:
return all_responses, aff_m_scales, pyr_idxs_scales , level_idxs_scale
return all_responses, LAFs, final_pyr_idxs, final_level_idxs,
def getAffineShape(self, final_resp, LAFs, final_pyr_idxs, final_level_idxs, num_features = 0):
pe_time = 0
affnet_time = 0
pyr_inv_idxs = get_inverted_pyr_index(self.scale_pyr, final_pyr_idxs, final_level_idxs)
t = time.time()
patches_small = extract_patches_from_pyramid_with_inv_index(self.scale_pyr, pyr_inv_idxs, LAFs, PS = self.AffNet.PS)
pe_time+=time.time() - t
t = time.time()
base_A = torch.eye(2).unsqueeze(0).expand(final_pyr_idxs.size(0),2,2)
if final_resp.is_cuda:
base_A = base_A.cuda()
base_A = Variable(base_A)
is_good = None
n_patches = patches_small.size(0)
for i in range(self.num_Baum_iters):
t = time.time()
A = batched_forward(self.AffNet, patches_small, 256)
is_good_current = 1
affnet_time += time.time() - t
if is_good is None:
is_good = is_good_current
else:
is_good = is_good * is_good_current
base_A = torch.bmm(A, base_A);
new_LAFs = torch.cat([torch.bmm(base_A,LAFs[:,:,0:2]), LAFs[:,:,2:] ], dim =2)
#print torch.sqrt(new_LAFs[0,0,0]*new_LAFs[0,1,1] - new_LAFs[0,1,0] *new_LAFs[0,0,1]) * scale_pyr[0][0].size(2)
if i != self.num_Baum_iters - 1:
pe_time+=time.time() - t
t = time.time()
patches_small = extract_patches_from_pyramid_with_inv_index(self.scale_pyr, pyr_inv_idxs, new_LAFs, PS = self.AffNet.PS)
pe_time+= time.time() - t
l1,l2 = batch_eig2x2(A)
ratio1 = torch.abs(l1 / (l2 + 1e-8))
converged_mask = (ratio1 <= 1.2) * (ratio1 >= (0.8))
l1,l2 = batch_eig2x2(base_A)
ratio = torch.abs(l1 / (l2 + 1e-8))
idxs_mask = ((ratio < 6.0) * (ratio > (1./6.))) * checkTouchBoundary(new_LAFs)
num_survived = idxs_mask.float().sum()
if (num_features > 0) and (num_survived.data.item() > num_features):
final_resp = final_resp * idxs_mask.float() #zero bad points
final_resp, idxs = torch.topk(final_resp, k = num_features);
else:
idxs = Variable(torch.nonzero(idxs_mask.data).view(-1).long())
final_resp = final_resp[idxs]
final_pyr_idxs = final_pyr_idxs[idxs]
final_level_idxs = final_level_idxs[idxs]
base_A = torch.index_select(base_A, 0, idxs)
LAFs = torch.index_select(LAFs, 0, idxs)
new_LAFs = torch.cat([torch.bmm(base_A, LAFs[:,:,0:2]),
LAFs[:,:,2:]], dim =2)
new_LAFs[:, :, :2] *= self.patch_scale
#print ('affnet_time',affnet_time)
#print ('pe_time', pe_time)
return final_resp, new_LAFs, final_pyr_idxs, final_level_idxs
def getOrientation(self, LAFs, final_pyr_idxs, final_level_idxs):
pyr_inv_idxs = get_inverted_pyr_index(self.scale_pyr, final_pyr_idxs, final_level_idxs)
patches_small = extract_patches_from_pyramid_with_inv_index(self.scale_pyr, pyr_inv_idxs, LAFs, PS = self.OriNet.PS)
max_iters = 1
### Detect orientation
for i in range(max_iters):
angles = self.OriNet(patches_small)
if len(angles.size()) > 2:
LAFs = torch.cat([torch.bmm( LAFs[:,:,:2], angles), LAFs[:,:,2:]], dim = 2)
else:
LAFs = torch.cat([torch.bmm( LAFs[:,:,:2], angles2A(angles).view(-1,2,2)), LAFs[:,:,2:]], dim = 2)
if i != max_iters:
patches_small = extract_patches_from_pyramid_with_inv_index(self.scale_pyr, pyr_inv_idxs, LAFs, PS = self.OriNet.PS)
return LAFs
def extract_patches_from_pyr(self, dLAFs, PS = 41):
pyr_idxs, level_idxs = get_pyramid_and_level_index_for_LAFs(dLAFs, self.sigmas, self.pix_dists, PS)
pyr_inv_idxs = get_inverted_pyr_index(self.scale_pyr, pyr_idxs, level_idxs)
patches = extract_patches_from_pyramid_with_inv_index(self.scale_pyr,
pyr_inv_idxs,
normalizeLAFs(dLAFs, self.scale_pyr[0][0].size(3), self.scale_pyr[0][0].size(2)),
PS = PS)
return patches
def forward(self,x, do_ori = False):
### Detection
t = time.time()
num_features_prefilter = self.num
if self.num_Baum_iters > 0:
num_features_prefilter = int(1.5 * self.num);
responses, LAFs, final_pyr_idxs, final_level_idxs = self.multiScaleDetector(x,num_features_prefilter)
#print (time.time() - t, 'detection multiscale')
t = time.time()
LAFs[:,0:2,0:2] = self.mrSize * LAFs[:,:,0:2]
if self.num_Baum_iters > 0:
responses, LAFs, final_pyr_idxs, final_level_idxs = self.getAffineShape(responses, LAFs, final_pyr_idxs, final_level_idxs, self.num)
#print (time.time() - t, 'affine shape iters')
t = time.time()
if do_ori:
LAFs = self.getOrientation(LAFs, final_pyr_idxs, final_level_idxs)
#pyr_inv_idxs = get_inverted_pyr_index(self.scale_pyr, final_pyr_idxs, final_level_idxs)
#patches = extract_patches_from_pyramid_with_inv_index(scale_pyr, pyr_inv_idxs, LAFs, PS = self.PS)
#patches = extract_patches(x, LAFs, PS = self.PS)
#print time.time() - t, len(LAFs), ' patches extraction'
return denormalizeLAFs(LAFs, x.size(3), x.size(2)), responses
| 10,911 | 49.753488 | 231 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/ReprojectonStuff.py | import torch
from torch.autograd import Variable
import numpy as np
from LAF import rectifyAffineTransformationUpIsUp
from Utils import zeros_like
def distance_matrix_vector(anchor, positive):
"""Given batch of anchor descriptors and positive descriptors calculate distance matrix"""
d1_sq = torch.sum(anchor * anchor, dim=1)
d2_sq = torch.sum(positive * positive, dim=1)
eps = 1e-6
return torch.sqrt(torch.abs((d1_sq.expand(positive.size(0), anchor.size(0)) +
torch.t(d2_sq.expand(anchor.size(0), positive.size(0)))
- 2.0 * torch.bmm(positive.unsqueeze(0), torch.t(anchor).unsqueeze(0)).squeeze(0))+eps))
def LAFs_to_H_frames(aff_pts):
H3_x = torch.Tensor([0, 0, 1 ]).unsqueeze(0).unsqueeze(0).expand_as(aff_pts[:,0:1,:]);
if aff_pts.is_cuda:
H3_x = H3_x.cuda()
H3_x = torch.autograd.Variable(H3_x)
return torch.cat([aff_pts, H3_x], dim = 1)
def linH(H, x, y):
assert x.size(0) == y.size(0)
A = torch.zeros(x.size(0),2,2)
if x.is_cuda:
A = A.cuda()
A = Variable(A)
den = x * H[2,0] + y * H[2,1] + H[2,2]
num1_densq = (x*H[0,0] + y*H[0,1] + H[0,2]) / (den*den)
num2_densq = (x*H[1,0] + y*H[1,1] + H[1,2]) / (den*den)
A[:,0,0] = H[0,0]/den - num1_densq * H[2,0]
A[:,0,1] = H[0,1]/den - num1_densq * H[2,1]
A[:,1,0] = H[1,0]/den - num2_densq * H[2,0]
A[:,1,1] = H[1,1]/den - num2_densq * H[2,1]
return A
def reprojectLAFs(LAFs1, H1to2, return_LHFs = False):
LHF1 = LAFs_to_H_frames(LAFs1)
xy1 = torch.bmm(H1to2.expand(LHF1.size(0),3,3), LHF1[:,:,2:])
xy1 = xy1 / xy1[:,2:,:].expand(xy1.size(0), 3, 1)
As = linH(H1to2, LAFs1[:,0,2], LAFs1[:,1,2])
AF = torch.bmm(As, LHF1[:,0:2,0:2])
if return_LHFs:
return LAFs_to_H_frames(torch.cat([AF, xy1[:,:2,:]], dim = 2))
return torch.cat([AF, xy1[:,:2,:]], dim = 2)
def inverseLHFs(LHFs):
LHF1_inv =torch.zeros(LHFs.size())
if LHFs.is_cuda:
LHF1_inv = LHF1_inv.cuda()
LHF1_inv = torch.autograd.Variable(LHF1_inv);
for i in range(LHF1_inv.size(0)):
LHF1_inv[i,:,:] = LHFs[i,:,:].inverse()
return LHF1_inv
def reproject_to_canonical_Frob_batched(LHF1_inv, LHF2, batch_size = 2, skip_center = False):
out = torch.zeros((LHF1_inv.size(0), LHF2.size(0)))
eye1 = torch.eye(3)
if LHF1_inv.is_cuda:
out = out.cuda()
eye1 = eye1.cuda()
eye1 = torch.autograd.Variable(eye1)
out = torch.autograd.Variable(out)
len1 = LHF1_inv.size(0)
len2 = LHF2.size(0)
n_batches = int(np.floor(len1 / batch_size) + 1);
for b_idx in range(n_batches):
#print b_idx
start = b_idx * batch_size;
fin = min((b_idx+1) * batch_size, len1)
current_bs = fin - start
if current_bs == 0:
break
should_be_eyes = torch.bmm(LHF1_inv[start:fin, :, :].unsqueeze(0).expand(len2,current_bs, 3, 3).contiguous().view(-1,3,3),
LHF2.unsqueeze(1).expand(len2,current_bs, 3,3).contiguous().view(-1,3,3))
if skip_center:
out[start:fin, :] = torch.sum(((should_be_eyes - eye1.unsqueeze(0).expand_as(should_be_eyes))**2)[:,:2,:2] , dim=1).sum(dim = 1).view(current_bs, len2)
else:
out[start:fin, :] = torch.sum((should_be_eyes - eye1.unsqueeze(0).expand_as(should_be_eyes))**2 , dim=1).sum(dim = 1).view(current_bs, len2)
return out
def get_GT_correspondence_indexes(LAFs1, LAFs2, H1to2, dist_threshold = 4):
LHF2_in_1_pre = reprojectLAFs(LAFs2, torch.inverse(H1to2), True)
just_centers1 = LAFs1[:,:,2];
just_centers2_repr_to_1 = LHF2_in_1_pre[:,0:2,2];
dist = distance_matrix_vector(just_centers2_repr_to_1, just_centers1)
min_dist, idxs_in_2 = torch.min(dist,1)
plain_indxs_in1 = torch.autograd.Variable(torch.arange(0, idxs_in_2.size(0)),requires_grad = False)
if LAFs1.is_cuda:
plain_indxs_in1 = plain_indxs_in1.cuda()
mask = min_dist <= dist_threshold
return min_dist[mask], plain_indxs_in1[mask], idxs_in_2[mask]
def get_GT_correspondence_indexes_Fro(LAFs1,LAFs2, H1to2, dist_threshold = 4,
skip_center_in_Fro = False):
LHF2_in_1_pre = reprojectLAFs(LAFs2, torch.inverse(H1to2), True)
LHF1_inv = inverseLHFs(LAFs_to_H_frames(LAFs1))
frob_norm_dist = reproject_to_canonical_Frob_batched(LHF1_inv, LHF2_in_1_pre, batch_size = 2, skip_center = skip_center_in_Fro)
min_dist, idxs_in_2 = torch.min(frob_norm_dist,1)
plain_indxs_in1 = torch.autograd.Variable(torch.arange(0, idxs_in_2.size(0)), requires_grad = False)
if LAFs1.is_cuda:
plain_indxs_in1 = plain_indxs_in1.cuda()
#print min_dist.min(), min_dist.max(), min_dist.mean()
mask = min_dist <= dist_threshold
return min_dist[mask], plain_indxs_in1[mask], idxs_in_2[mask]
def get_GT_correspondence_indexes_Fro_and_center(LAFs1,LAFs2, H1to2, dist_threshold = 4, center_dist_th = 2.0,
skip_center_in_Fro = False, do_up_is_up = False, return_LAF2_in_1 = False):
LHF2_in_1_pre = reprojectLAFs(LAFs2, torch.inverse(H1to2), True)
if do_up_is_up:
sc = torch.sqrt(LHF2_in_1_pre[:,0,0] * LHF2_in_1_pre[:,1,1] - LHF2_in_1_pre[:,1,0] * LHF2_in_1_pre[:,0,1]).unsqueeze(-1).unsqueeze(-1).expand(LHF2_in_1_pre.size(0), 2,2)
LHF2_in_1 = torch.zeros(LHF2_in_1_pre.size())
if LHF2_in_1_pre.is_cuda:
LHF2_in_1 = LHF2_in_1.cuda()
LHF2_in_1 = Variable(LHF2_in_1)
LHF2_in_1[:, :2,:2] = rectifyAffineTransformationUpIsUp(LHF2_in_1_pre[:, :2,:2]/sc) * sc
LHF2_in_1[:,:, 2] = LHF2_in_1_pre[:,:,2]
else:
LHF2_in_1 = LHF2_in_1_pre
LHF1_inv = inverseLHFs(LAFs_to_H_frames(LAFs1))
frob_norm_dist = reproject_to_canonical_Frob_batched(LHF1_inv, LHF2_in_1, batch_size = 2, skip_center = skip_center_in_Fro)
#### Center replated
just_centers1 = LAFs1[:,:,2];
just_centers2_repr_to_1 = LHF2_in_1[:,0:2,2];
center_dist_mask = distance_matrix_vector(just_centers2_repr_to_1, just_centers1) >= center_dist_th
frob_norm_dist_masked = center_dist_mask.float() * 1000. + frob_norm_dist;
min_dist, idxs_in_2 = torch.min(frob_norm_dist_masked,1)
plain_indxs_in1 = torch.arange(0, idxs_in_2.size(0))
if LAFs1.is_cuda:
plain_indxs_in1 = plain_indxs_in1.cuda()
plain_indxs_in1 = torch.autograd.Variable(plain_indxs_in1, requires_grad = False)
#min_dist, idxs_in_2 = torch.min(dist,1)
#print min_dist.min(), min_dist.max(), min_dist.mean()
mask = (min_dist <= dist_threshold )
if return_LAF2_in_1:
return min_dist[mask], plain_indxs_in1[mask], idxs_in_2[mask], LHF2_in_1[:,0:2,:]
else:
return min_dist[mask], plain_indxs_in1[mask], idxs_in_2[mask]
| 6,844 | 45.25 | 177 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/Utils.py | import torch
import torch.nn.init
import torch.nn as nn
import torch.nn.functional as F
from torch.autograd import Variable
import cv2
import numpy as np
# resize image to size 32x32
cv2_scale = lambda x: cv2.resize(x, dsize=(32, 32),
interpolation=cv2.INTER_LINEAR)
# reshape image
np_reshape32 = lambda x: np.reshape(x, (32, 32, 1))
np_reshape64 = lambda x: np.reshape(x, (64, 64, 1))
def zeros_like(x):
assert x.__class__.__name__.find('Variable') != -1 or x.__class__.__name__.find('Tensor') != -1, "Object is neither a Tensor nor a Variable"
y = torch.zeros(x.size())
if x.is_cuda:
y = y.cuda()
if x.__class__.__name__ == 'Variable':
return torch.autograd.Variable(y, requires_grad=x.requires_grad)
elif x.__class__.__name__.find('Tensor') != -1:
return torch.zeros(y)
def ones_like(x):
assert x.__class__.__name__.find('Variable') != -1 or x.__class__.__name__.find('Tensor') != -1, "Object is neither a Tensor nor a Variable"
y = torch.ones(x.size())
if x.is_cuda:
y = y.cuda()
if x.__class__.__name__ == 'Variable':
return torch.autograd.Variable(y, requires_grad=x.requires_grad)
elif x.__class__.__name__.find('Tensor') != -1:
return torch.ones(y)
def batched_forward(model, data, batch_size, **kwargs):
n_patches = len(data)
if n_patches > batch_size:
bs = batch_size
n_batches = int(n_patches / bs + 1)
for batch_idx in range(n_batches):
st = batch_idx * bs
if batch_idx == n_batches - 1:
if (batch_idx + 1) * bs > n_patches:
end = n_patches
else:
end = (batch_idx + 1) * bs
else:
end = (batch_idx + 1) * bs
if st >= end:
continue
if batch_idx == 0:
first_batch_out = model(data[st:end], kwargs)
out_size = torch.Size([n_patches] + list(first_batch_out.size()[1:]))
#out_size[0] = n_patches
out = torch.zeros(out_size);
if data.is_cuda:
out = out.cuda()
out = Variable(out)
out[st:end] = first_batch_out
else:
out[st:end,:,:] = model(data[st:end], kwargs)
return out
else:
return model(data, kwargs)
class L2Norm(nn.Module):
def __init__(self):
super(L2Norm,self).__init__()
self.eps = 1e-10
def forward(self, x):
norm = torch.sqrt(torch.sum(x * x, dim = 1) + self.eps)
x= x / norm.unsqueeze(-1).expand_as(x)
return x
class L1Norm(nn.Module):
def __init__(self):
super(L1Norm,self).__init__()
self.eps = 1e-10
def forward(self, x):
norm = torch.sum(torch.abs(x), dim = 1) + self.eps
x= x / norm.expand_as(x)
return x
def str2bool(v):
if v.lower() in ('yes', 'true', 't', 'y', '1'):
return True
elif v.lower() in ('no', 'false', 'f', 'n', '0'):
return False
def CircularGaussKernel(kernlen=None, circ_zeros = False, sigma = None, norm = True):
assert ((kernlen is not None) or sigma is not None)
if kernlen is None:
kernlen = int(2.0 * 3.0 * sigma + 1.0)
if (kernlen % 2 == 0):
kernlen = kernlen + 1;
halfSize = kernlen / 2;
halfSize = kernlen / 2;
r2 = float(halfSize*halfSize)
if sigma is None:
sigma2 = 0.9 * r2;
sigma = np.sqrt(sigma2)
else:
sigma2 = 2.0 * sigma * sigma
x = np.linspace(-halfSize,halfSize,kernlen)
xv, yv = np.meshgrid(x, x, sparse=False, indexing='xy')
distsq = (xv)**2 + (yv)**2
kernel = np.exp(-( distsq/ (sigma2)))
if circ_zeros:
kernel *= (distsq <= r2).astype(np.float32)
if norm:
kernel /= np.sum(kernel)
return kernel
def generate_2dgrid(h,w, centered = True):
if centered:
x = torch.linspace(-w/2+1, w/2, w)
y = torch.linspace(-h/2+1, h/2, h)
else:
x = torch.linspace(0, w-1, w)
y = torch.linspace(0, h-1, h)
grid2d = torch.stack([y.repeat(w,1).t().contiguous().view(-1), x.repeat(h)],1)
return grid2d
def generate_3dgrid(d, h, w, centered = True):
if type(d) is not list:
if centered:
z = torch.linspace(-d/2+1, d/2, d)
else:
z = torch.linspace(0, d-1, d)
dl = d
else:
z = torch.FloatTensor(d)
dl = len(d)
grid2d = generate_2dgrid(h,w, centered = centered)
grid3d = torch.cat([z.repeat(w*h,1).t().contiguous().view(-1,1), grid2d.repeat(dl,1)],dim = 1)
return grid3d
def zero_response_at_border(x, b):
if (b < x.size(3)) and (b < x.size(2)):
x[:, :, 0:b, :] = 0
x[:, :, x.size(2) - b: , :] = 0
x[:, :, :, 0:b] = 0
x[:, :, :, x.size(3) - b: ] = 0
else:
return x * 0
return x
class GaussianBlur(nn.Module):
def __init__(self, sigma=1.6):
super(GaussianBlur, self).__init__()
weight = self.calculate_weights(sigma)
self.register_buffer('buf', weight)
return
def calculate_weights(self, sigma):
kernel = CircularGaussKernel(sigma = sigma, circ_zeros = False)
h,w = kernel.shape
halfSize = float(h) / 2.;
self.pad = int(np.floor(halfSize))
return torch.from_numpy(kernel.astype(np.float32)).view(1,1,h,w);
def forward(self, x):
w = Variable(self.buf)
if x.is_cuda:
w = w.cuda()
return F.conv2d(F.pad(x, (self.pad,self.pad,self.pad,self.pad), 'replicate'), w, padding = 0)
def batch_eig2x2(A):
trace = A[:,0,0] + A[:,1,1]
delta1 = (trace*trace - 4 * ( A[:,0,0]* A[:,1,1] - A[:,1,0]* A[:,0,1]))
mask = delta1 > 0
delta = torch.sqrt(torch.abs(delta1))
l1 = mask.float() * (trace + delta) / 2.0 + 1000. * (1.0 - mask.float())
l2 = mask.float() * (trace - delta) / 2.0 + 0.0001 * (1.0 - mask.float())
return l1,l2
def line_prepender(filename, line):
with open(filename, 'r+') as f:
content = f.read()
f.seek(0, 0)
f.write(line.rstrip('\r\n') + '\n' + content)
return
| 6,244 | 33.125683 | 144 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/architectures.py | from __future__ import division, print_function
import os
import errno
import numpy as np
import sys
from copy import deepcopy
import math
import torch
import torch.nn.init
import torch.nn as nn
import torch.optim as optim
import torch.nn.functional as F
import torchvision.transforms as transforms
from torch.autograd import Variable
from Utils import L2Norm, generate_2dgrid
from Utils import str2bool
from LAF import denormalizeLAFs, LAFs2ell, abc2A, extract_patches,normalizeLAFs, get_rotation_matrix
from LAF import get_LAFs_scales, get_normalized_affine_shape
from LAF import rectifyAffineTransformationUpIsUp,rectifyAffineTransformationUpIsUpFullyConv
class LocalNorm2d(nn.Module):
def __init__(self, kernel_size = 33):
super(LocalNorm2d, self).__init__()
self.ks = kernel_size
self.pool = nn.AvgPool2d(kernel_size = self.ks, stride = 1, padding = 0)
self.eps = 1e-10
return
def forward(self,x):
pd = int(self.ks/2)
mean = self.pool(F.pad(x, (pd,pd,pd,pd), 'reflect'))
return torch.clamp((x - mean) / (torch.sqrt(torch.abs(self.pool(F.pad(x*x, (pd,pd,pd,pd), 'reflect')) - mean*mean )) + self.eps), min = -6.0, max = 6.0)
class OriNetFast(nn.Module):
def __init__(self, PS = 16):
super(OriNetFast, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 2, kernel_size=int(PS/4), stride=1,padding=1, bias = True),
nn.Tanh(),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/4)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1)
sp = torch.std(flat, dim=1) + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.9)
try:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_rot_matrix = True):
xy = self.features(self.input_norm(input)).view(-1,2)
angle = torch.atan2(xy[:,0] + 1e-8, xy[:,1]+1e-8);
if return_rot_matrix:
return get_rotation_matrix(angle)
return angle
class GHH(nn.Module):
def __init__(self, n_in, n_out, s = 4, m = 4):
super(GHH, self).__init__()
self.n_out = n_out
self.s = s
self.m = m
self.conv = nn.Linear(n_in, n_out * s * m)
d = torch.arange(0, s)
self.deltas = -1.0 * (d % 2 != 0).float() + 1.0 * (d % 2 == 0).float()
self.deltas = Variable(self.deltas)
return
def forward(self,x):
x_feats = self.conv(x.view(x.size(0),-1)).view(x.size(0), self.n_out, self.s, self.m);
max_feats = x_feats.max(dim = 3)[0];
if x.is_cuda:
self.deltas = self.deltas.cuda()
else:
self.deltas = self.deltas.cpu()
out = (max_feats * self.deltas.view(1,1,-1).expand_as(max_feats)).sum(dim = 2)
return out
class YiNet(nn.Module):
def __init__(self, PS = 28):
super(YiNet, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 10, kernel_size=5, padding=0, bias = True),
nn.ReLU(),
nn.MaxPool2d(kernel_size=3, stride=2, padding = 1),
nn.Conv2d(10, 20, kernel_size=5, stride=1, padding=0, bias = True),
nn.ReLU(),
nn.MaxPool2d(kernel_size=4, stride=2, padding = 2),
nn.Conv2d(20, 50, kernel_size=3, stride=1, padding=0, bias = True),
nn.ReLU(),
nn.AdaptiveMaxPool2d(1),
GHH(50, 100),
GHH(100, 2)
)
self.input_mean = 0.427117081207483
self.input_std = 0.21888339179665006;
self.PS = PS
return
def import_weights(self, dir_name):
self.features[0].weight.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer0_W.npy'))).float()
self.features[0].bias.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer0_b.npy'))).float().view(-1)
self.features[3].weight.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer1_W.npy'))).float()
self.features[3].bias.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer1_b.npy'))).float().view(-1)
self.features[6].weight.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer2_W.npy'))).float()
self.features[6].bias.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer2_b.npy'))).float().view(-1)
self.features[9].conv.weight.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer3_W.npy'))).float().view(50, 1600).contiguous().t().contiguous()
self.features[9].conv.bias.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer3_b.npy'))).float().view(1600)
self.features[10].conv.weight.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer4_W.npy'))).float().view(100, 32).contiguous().t().contiguous()
self.features[10].conv.bias.data = torch.from_numpy(np.load(os.path.join(dir_name, 'layer4_b.npy'))).float().view(32)
self.input_mean = float(np.load(os.path.join(dir_name, 'input_mean.npy')))
self.input_std = float(np.load(os.path.join(dir_name, 'input_std.npy')))
return
def input_norm1(self,x):
return (x - self.input_mean) / self.input_std
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1)
sp = torch.std(flat, dim=1) + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def forward(self, input, return_rot_matrix = False):
xy = self.features(self.input_norm(input))
angle = torch.atan2(xy[:,0] + 1e-8, xy[:,1]+1e-8);
if return_rot_matrix:
return get_rotation_matrix(-angle)
return angle
class AffNetFast4(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast4, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 4, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
# print ('last layer init bias')
m.bias.data = torch.FloatTensor([1,0,0,1])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
xy = self.features(self.input_norm(input)).view(-1,2,2).contiguous()
return rectifyAffineTransformationUpIsUp(xy).contiguous()
class AffNetFast(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 3, kernel_size=8, stride=1, padding=0, bias = True),
nn.Tanh(),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal_(m.weight.data, gain=0.8)
try:
nn.init.constant_(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
xy = self.features(self.input_norm(input)).view(-1,3)
a1 = torch.cat([1.0 + xy[:,0].contiguous().view(-1,1,1), 0 * xy[:,0].contiguous().view(-1,1,1)], dim = 2).contiguous()
a2 = torch.cat([xy[:,1].contiguous().view(-1,1,1), 1.0 + xy[:,2].contiguous().view(-1,1,1)], dim = 2).contiguous()
return rectifyAffineTransformationUpIsUp(torch.cat([a1,a2], dim = 1).contiguous())
class AffNetFast52RotUp(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast52RotUp, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 5, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
# print ('last layer init bias')
m.bias.data = torch.FloatTensor([1,0, 1, 0, 1])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
x = self.features(self.input_norm(input)).view(-1,5)
angle = torch.atan2(x[:,3], x[:,4]+1e-8);
rot = get_rotation_matrix(angle)
return torch.bmm(rot, rectifyAffineTransformationUpIsUp(torch.cat([torch.cat([x[:,0:1].view(-1,1,1), x[:,1:2].view(x.size(0),1,1).contiguous()], dim = 2), x[:,1:3].view(-1,1,2).contiguous()], dim = 1)).contiguous())
class AffNetFast52Rot(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast52Rot, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 5, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1),
nn.Tanh()
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
# print ('last layer init bias')
m.bias.data = torch.FloatTensor([0.8,0, 0.8, 0, 1])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
x = self.features(self.input_norm(input)).view(-1,5)
angle = torch.atan2(x[:,3], x[:,4]+1e-8);
rot = get_rotation_matrix(angle)
return torch.bmm(rot, torch.cat([torch.cat([x[:,0:1].view(-1,1,1), x[:,1:2].view(x.size(0),1,1).contiguous()], dim = 2), x[:,1:3].view(-1,1,2).contiguous()], dim = 1))
class AffNetFast5Rot(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast5Rot, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 5, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
# print ('last layer init bias')
m.bias.data = torch.FloatTensor([1,0, 1, 0, 1])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
x = self.features(self.input_norm(input)).view(-1,5)
rot = get_rotation_matrix(torch.atan2(x[:,3], x[:,4]+1e-8))
if input.is_cuda:
return torch.bmm(rot, torch.cat([torch.cat([x[:,0:1].view(-1,1,1), torch.zeros(x.size(0),1,1).cuda()], dim = 2), x[:,1:3].view(-1,1,2).contiguous()], dim = 1))
else:
return torch.bmm(rot, torch.cat([torch.cat([x[:,0:1].view(-1,1,1), torch.zeros(x.size(0),1,1)], dim = 2), x[:,1:3].view(-1,1,2).contiguous()], dim = 1))
class AffNetFast4Rot(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast4Rot, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 4, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1),
nn.Tanh()
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
print ('last layer init bias')
m.bias.data = torch.FloatTensor([0.8,0,0,0.8])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
return self.features(self.input_norm(input)).view(-1,2,2).contiguous()
class AffNetFast4RotNosc(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast4RotNosc, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 4, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
print ('last layer init bias')
m.bias.data = torch.FloatTensor([1,0,0,1])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
A = self.features(self.input_norm(input)).view(-1,2,2).contiguous()
scale = torch.sqrt(torch.abs(A[:,0,0]*A[:,1,1] - A[:,1,0]*A[:,0,1] + 1e-10))
return A / (scale.view(-1,1,1).repeat(1,2,2) + 1e-8)
class AffNetFastScale(nn.Module):
def __init__(self, PS = 32):
super(AffNetFastScale, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 4, kernel_size=8, stride=1, padding=0, bias = True),
nn.Tanh(),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
xy = self.features(self.input_norm(input)).view(-1,4)
a1 = torch.cat([1.0 + xy[:,0].contiguous().view(-1,1,1), 0 * xy[:,0].contiguous().view(-1,1,1)], dim = 2).contiguous()
a2 = torch.cat([xy[:,1].contiguous().view(-1,1,1), 1.0 + xy[:,2].contiguous().view(-1,1,1)], dim = 2).contiguous()
scale = torch.exp(xy[:,3].contiguous().view(-1,1,1).repeat(1,2,2))
return scale * rectifyAffineTransformationUpIsUp(torch.cat([a1,a2], dim = 1).contiguous())
class AffNetFast2Par(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast2Par, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 3, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
print ('last layer init bias')
m.bias.data = torch.FloatTensor([0, 0, 1 ])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
x = self.features(self.input_norm(input)).view(-1,3)
angle = torch.atan2(x[:,1], x[:,2]+1e-8);
rot = get_rotation_matrix(angle)
tilt = torch.exp(1.8 * F.tanh(x[:,0]))
tilt_matrix = torch.eye(2).unsqueeze(0).repeat(input.size(0),1,1)
if x.is_cuda:
tilt_matrix = tilt_matrix.cuda()
tilt_matrix[:,0,0] = torch.sqrt(tilt)
tilt_matrix[:,1,1] = 1.0 / torch.sqrt(tilt)
return rectifyAffineTransformationUpIsUp(torch.bmm(rot, tilt_matrix)).contiguous()
class AffNetFastFullConv(nn.Module):
def __init__(self, PS = 32, stride = 2):
super(AffNetFastFullConv, self).__init__()
self.lrn = LocalNorm2d(33)
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=stride, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=stride, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 3, kernel_size=8, stride=1, padding = 0, bias = True),
)
self.stride = stride
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
norm_inp = self.lrn(input)
ff = self.features(F.pad(norm_inp, (14,14,14,14), 'reflect'))
xy = F.tanh(F.upsample(ff, (input.size(2), input.size(3)),mode='bilinear'))
a0bc = torch.cat([1.0 + xy[:,0:1,:,:].contiguous(), 0*xy[:,1:2,:,:].contiguous(),
xy[:,1:2,:,:].contiguous(), 1.0 + xy[:,2:,:,:].contiguous()], dim = 1).contiguous()
return rectifyAffineTransformationUpIsUpFullyConv(a0bc).contiguous()
class AffNetFast52RotL(nn.Module):
def __init__(self, PS = 32):
super(AffNetFast52RotL, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 5, kernel_size=8, stride=1, padding=0, bias = True),
nn.AdaptiveAvgPool2d(1),
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
print ('last layer init bias')
m.bias.data = torch.FloatTensor([0.8,0, 0.8, 0, 1])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
x = self.features(self.input_norm(input)).view(-1,5)
angle = torch.atan2(x[:,3], x[:,4]+1e-8);
rot = get_rotation_matrix(angle)
return torch.bmm(rot, torch.cat([torch.cat([x[:,0:1].view(-1,1,1), x[:,1:2].view(x.size(0),1,1).contiguous()], dim = 2), x[:,1:3].view(-1,1,2).contiguous()], dim = 1))
class AffNetFastBias(nn.Module):
def __init__(self, PS = 32):
super(AffNetFastBias, self).__init__()
self.features = nn.Sequential(
nn.Conv2d(1, 16, kernel_size=3, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 16, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(16, affine=False),
nn.ReLU(),
nn.Conv2d(16, 32, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 32, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(32, affine=False),
nn.ReLU(),
nn.Conv2d(32, 64, kernel_size=3, stride=2, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1, bias = False),
nn.BatchNorm2d(64, affine=False),
nn.ReLU(),
nn.Dropout(0.25),
nn.Conv2d(64, 3, kernel_size=8, stride=1, padding=0, bias = True),
nn.Tanh(),
nn.AdaptiveAvgPool2d(1)
)
self.PS = PS
self.features.apply(self.weights_init)
self.halfPS = int(PS/2)
return
def input_norm(self,x):
flat = x.view(x.size(0), -1)
mp = torch.mean(flat, dim=1).detach()
sp = torch.std(flat, dim=1).detach() + 1e-7
return (x - mp.unsqueeze(-1).unsqueeze(-1).unsqueeze(-1).expand_as(x)) / sp.unsqueeze(-1).unsqueeze(-1).unsqueeze(1).expand_as(x)
def weights_init(self,m):
if isinstance(m, nn.Conv2d):
nn.init.orthogonal(m.weight.data, gain=0.8)
try:
if m.weight.data.shape[-1] == 8: #last layer:
nn.init.orthogonal(m.weight.data, gain=1.0)
print ('last layer init bias')
m.bias.data = torch.FloatTensor([0.8, 0, 0.8 ])
else:
nn.init.constant(m.bias.data, 0.01)
except:
pass
return
def forward(self, input, return_A_matrix = False):
xy = self.features(self.input_norm(input)).view(-1,3)
a1 = torch.cat([xy[:,0].contiguous().view(-1,1,1), 0 * xy[:,0].contiguous().view(-1,1,1)], dim = 2).contiguous()
a2 = torch.cat([xy[:,1].contiguous().view(-1,1,1), xy[:,2].contiguous().view(-1,1,1)], dim = 2).contiguous()
return rectifyAffineTransformationUpIsUp(torch.cat([a1,a2], dim = 1).contiguous())
| 36,272 | 45.32567 | 223 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/extract_features_oxaff.py | import torch
import torch.nn as nn
import numpy as np
import sys
import time
from PIL import Image
from torch.autograd import Variable
from SparseImgRepresenter import ScaleSpaceAffinePatchExtractor
from LAF import denormalizeLAFs, LAFs2ell
from Utils import line_prepender
USE_CUDA = False
try:
input_img_fname = sys.argv[1]
output_fname = sys.argv[2]
nfeats = int(sys.argv[3])
except:
print("Wrong input format. Try python extract_features_oxaff.py graf1.ppm out.txt 2000")
sys.exit(1)
img = Image.open(input_img_fname).convert('RGB')
img = np.mean(np.array(img), axis = 2)
var_image = torch.autograd.Variable(torch.from_numpy(img.astype(np.float32)))
var_image = var_image.view(1, 1, var_image.size(0),var_image.size(1))
HA = ScaleSpaceAffinePatchExtractor(mrSize = 5.192, num_features = nfeats, border = 5, num_Baum_iters = 16)
if USE_CUDA:
HA = HA.cuda()
var_image = var_image.cuda()
LAFs, resp = HA(var_image)
ells = LAFs2ell(LAFs.data.cpu().numpy())
np.savetxt(output_fname, ells, delimiter=' ', fmt='%10.10f')
line_prepender(output_fname, str(len(ells)))
line_prepender(output_fname, '1.0') | 1,140 | 27.525 | 107 | py |
NORPPA | NORPPA-main/reidentification/hesaff_pytorch/pytorch_sift.py | import torch
import math
import torch.nn.init
import torch.nn as nn
from torch.autograd import Variable
import torch.backends.cudnn as cudnn
import numpy as np
class L2Norm(nn.Module):
def __init__(self):
super(L2Norm,self).__init__()
self.eps = 1e-10
def forward(self, x):
norm = torch.sqrt(torch.sum(x * x, dim = 1) + self.eps)
x= x / norm.unsqueeze(-1).expand_as(x)
return x
class L1Norm(nn.Module):
def __init__(self):
super(L1Norm,self).__init__()
self.eps = 1e-10
def forward(self, x):
norm = torch.sum(torch.abs(x), dim = 1) + self.eps
x= x / norm.expand_as(x)
return x
class my_atan2(torch.autograd.Function):
def forward(self, input1,input2):
self.save_for_backward(input1, input2)
return torch.atan2(input1,input2)
def backward(self, grad_output):
y,x = self.saved_tensors
xsq_ysq = x*x + y*y
return grad_output * x/xsq_ysq, grad_output *-(y/xsq_ysq)
def getPoolingKernel(kernel_size = 25):
step = 1. / float(np.floor( kernel_size / 2.));
x_coef = np.arange(step/2., 1. ,step)
xc2 = np.hstack([x_coef,[1], x_coef[::-1]])
kernel = np.outer(xc2.T,xc2)
kernel = np.maximum(0,kernel)
return kernel
def get_bin_weight_kernel_size_and_stride(patch_size, num_spatial_bins):
bin_weight_stride = int(round(2.0 * math.floor(patch_size / 2) / float(num_spatial_bins + 1)))
bin_weight_kernel_size = int(2 * bin_weight_stride - 1);
return bin_weight_kernel_size, bin_weight_stride
class SIFTNet(nn.Module):
def CircularGaussKernel(self,kernlen=21):
halfSize = kernlen / 2;
r2 = float(halfSize*halfSize);
sigma2 = 0.9 * r2;
disq = 0;
kernel = np.zeros((kernlen,kernlen))
for y in range(kernlen):
for x in range(kernlen):
disq = (y - halfSize)*(y - halfSize) + (x - halfSize)*(x - halfSize);
if disq < r2:
kernel[y,x] = math.exp(-disq / sigma2)
else:
kernel[y,x] = 0.
return kernel
def __init__(self, patch_size = 65, num_ang_bins = 8, num_spatial_bins = 4, clipval = 0.2, do_cuda = False):
super(SIFTNet, self).__init__()
gk = torch.from_numpy(self.CircularGaussKernel(kernlen=patch_size).astype(np.float32))
self.bin_weight_kernel_size, self.bin_weight_stride = get_bin_weight_kernel_size_and_stride(patch_size, num_spatial_bins)
self.gk = Variable(gk, volatile=True)
if do_cuda:
self.gk = self.gk.cuda()
self.num_ang_bins = num_ang_bins
self.num_spatial_bins = num_spatial_bins
self.clipval = clipval
self.gx = nn.Sequential(nn.Conv2d(1, 1, kernel_size=(1,3), padding = (0,1), bias = False))
for l in self.gx:
if isinstance(l, nn.Conv2d):
l.weight.data = torch.from_numpy(np.array([[[[-1, 0, 1]]]], dtype=np.float32))
self.gy = nn.Sequential(nn.Conv2d(1, 1, kernel_size=(3,1), padding = (1,0), bias = False))
for l in self.gy:
if isinstance(l, nn.Conv2d):
l.weight.data = torch.from_numpy(np.array([[[[-1], [0], [1]]]], dtype=np.float32))
self.pk = nn.Sequential(nn.Conv2d(1, 1, kernel_size=(self.bin_weight_kernel_size, self.bin_weight_kernel_size),
stride = (self.bin_weight_stride, self.bin_weight_stride),
bias = False))
for l in self.pk:
if isinstance(l, nn.Conv2d):
nw = getPoolingKernel(kernel_size = self.bin_weight_kernel_size)
new_weights = np.array(nw.reshape((1, 1, self.bin_weight_kernel_size, self.bin_weight_kernel_size)))
l.weight.data = torch.from_numpy(new_weights.astype(np.float32))
def forward(self, x):
gx = self.gx(x)
gy = self.gy(x)
mag = torch.sqrt(gx * gx + gy * gy + 1e-10)
ori = my_atan2()(gy,gx)
mag = mag * self.gk.expand_as(mag)
o_big = (ori +2.0 * math.pi )/ (2.0 * math.pi) * float(self.num_ang_bins)
bo0_big = torch.floor(o_big)
wo1_big = o_big - bo0_big
bo0_big = bo0_big % self.num_ang_bins
bo1_big = (bo0_big + 1) % self.num_ang_bins
wo0_big = (1.0 - wo1_big) * mag
wo1_big = wo1_big * mag
ang_bins = []
for i in range(0, self.num_ang_bins):
ang_bins.append(self.pk((bo0_big == i).float() * wo0_big + (bo1_big == i).float() * wo1_big))
ang_bins = torch.cat(ang_bins,1)
ang_bins = ang_bins.view(ang_bins.size(0), -1)
ang_bins = L2Norm()(ang_bins)
ang_bins = torch.clamp(ang_bins, 0.,float(self.clipval))
ang_bins = L2Norm()(ang_bins)
return ang_bins
| 4,815 | 42.781818 | 129 | py |
NORPPA | NORPPA-main/tonemapping/tonemapping.py | """
The script peforms tone mapping.
Usage:
python correct.py -s <source_dir_path> -d <dest_dir_path>
There is no need to create the directory for the results manually since it will
be generated automatically preseving the structure of the source directory.
"""
from argparse import ArgumentParser
import json
import os
from tools import is_image
import subprocess
from pathlib import Path
import numpy as np
import skimage.color
import matplotlib.pyplot as plt
from PIL import Image
from subprocess import *
def decode(input):
sep = b"ENDH"
endh = input.find(sep)
header = input[:endh].decode()
lines = header.split('\n')
size = lines[1].split(' ')
channels = int(lines[2])
width = int(size[0])
height = int(size[1])
image = input[endh+len(sep):]
vals = np.frombuffer(image, dtype=np.float32)
image = np.reshape(vals, (channels, height, width)).transpose((1, 2, 0))
image = skimage.color.xyz2rgb(image)
image = Image.fromarray(np.uint8(image*255))
return image
def encode(image, label):
header_start = "PFS1"
width, height = image.size
channels = len(image.split())
luminance = "RELATIVE"
WHITE_Y = 1
tags = 4
BITDEPTH=8
X = 0
Y = 0
Z = 0
header_end = "ENDH"
header_string = f'{header_start}\n{width} {height}\n{channels}\n{tags}\nLUMINANCE={luminance}\nWHITE_Y={WHITE_Y}\nFILE_NAME={label}\nBITDEPTH={BITDEPTH}\nX\n{X}\nY\n{Y}\nZ\n{Z}\n{header_end}'
image = skimage.color.rgb2xyz(image)
image_array = np.array(image, dtype=np.float32).transpose((2, 0, 1))
vals = header_string.encode() + np.ndarray.tobytes(image_array)
return vals
def call_mantiuk(img_bytes):
p = Popen(['pfstmo_mantiuk06', '--quiet'], stdin=PIPE, stdout=PIPE)
stdout, _ = p.communicate(input=img_bytes)
return stdout
def tonemap(image, label=""):
image = encode(image, label)
image = call_mantiuk(image)
return decode(image)
def get_path(label):
if type(label) is str:
return label
elif type(label) is dict:
return label['file']
else:
return ""
def tonemap_step(input):
image, img_label = input
if image is None:
return []
image = encode(image, get_path(img_label))
image = call_mantiuk(image)
result_image = decode(image)
return [(result_image, img_label)]
| 2,371 | 25.065934 | 195 | py |
NORPPA | NORPPA-main/pattern_extraction/extract_pattern.py | from math import ceil, floor
import numpy as np
from PIL import ImageFile
import tensorflow as tf
from math import ceil, floor
from pattern_extraction.model import *
from pattern_extraction.utils import *
from pathlib import Path
import skimage.transform as trans
file_folder = Path(__file__).resolve().parent
ImageFile.LOAD_TRUNCATED_IMAGES = True
def create_unet(model_path):
return unet(pretrained_weights=str(model_path))
def extract_pattern(input, model):
confidence=0.6
image, img_label = input
if image is None:
return [input]
initial_size = image.size
scale = 512/max(initial_size)
new_size = [floor(x*scale) for x in initial_size]
image = image.convert('L')
image = np.array(image)
image = trans.resize(image, new_size[::-1])
scaled_size = image.shape
image = np.pad(image, ((0, 512-scaled_size[0]),(0, 512-scaled_size[1])), 'constant', constant_values=(0))
image = tf.expand_dims(image, axis=0)
image = tf.expand_dims(image, axis=-1)
result = model.predict(image)
result = result[0, :scaled_size[0], :scaled_size[1], 0]
result = postprocess(result, confidence, initial_size, True)
if result is not None:
result, ratio = result
if type(img_label) is dict:
img_label["resize_ratio"] = ratio
if sum(result.convert("L").getextrema()) in (0, 2):
result = None
return [(result, img_label)] | 1,445 | 27.92 | 109 | py |
NORPPA | NORPPA-main/pattern_extraction/utils.py | import numpy as np
import skimage.transform as trans
from skimage.morphology import skeletonize
from PIL import Image
from math import ceil, floor
def crop(img_path, flag_multi_class=False):
img = np.asarray(Image.open(img_path).convert('L'))
size_y, size_x = img.shape
where = np.where(img!=0)
y1, x1 = np.amin(where, axis=1)
y2, x2 = np.amax(where, axis=1)
x = x2 - x1
y = y2 - y1
z = ceil((x + y) / 2)
z = max(x,y)
x1 = max(x2 - floor(x/2) - floor(z/2), 0)
x2 = x2 - floor(x/2) + ceil(z/2)
y1 = max(y2 - floor(y/2) - floor(z/2), 0)
y2 = y2 - floor(y/2) + ceil(z/2)
source_cropped = img[y1:y2, x1:x2]
xx, yy = source_cropped.shape
source_cropped = np.pad(source_cropped, ((0, max(z-xx,0)),(0, max(z-yy,0))), 'constant', constant_values=(0))
s = source_cropped.shape
source_cropped = trans.resize(source_cropped, [512,512])
img = np.reshape(img,img.shape+(1,)) if (not flag_multi_class) else img
img = np.reshape(img,(1,)+img.shape)
return (source_cropped, img_path, s, [max(z-xx,0),max(z-yy,0)], [y1, max(size_y-y2,0), x1, max(size_x-x2,0)])
def smart_resize(img, size, return_ratio=False):
ratio = size / max(img.size)
result = img.resize(tuple(int(i * ratio) for i in img.size), Image.ANTIALIAS)
if return_ratio:
return (result, ratio)
else:
return result
def thickness_resize(img, thickness=2, return_ratio=False):
if img.mode != 'L':
img = img.convert('L')
img0 = np.array(img) > 0
area = np.sum(img0)
if area==0:
return smart_resize(img, 300, return_ratio)
img1 = skeletonize(img0)
length = np.sum(img1)
thickness_current = area / length
ratio = thickness / thickness_current
resized_img = img.resize(tuple(int(i * ratio) for i in img.size), Image.ANTIALIAS)
if return_ratio:
return (resized_img, ratio)
else:
return resized_img
def postprocess(img, confidence, initial_size, return_ratio=False):
img = trans.resize(img, initial_size[::-1])
img = ((img>confidence)*255).astype('uint8')
if (np.sum(img) < 0.01* np.prod(initial_size)):
return None
img = Image.fromarray(img)
return thickness_resize(img, return_ratio=return_ratio)
| 2,283 | 28.662338 | 113 | py |
NORPPA | NORPPA-main/pattern_extraction/model.py | import numpy as np
import os
import skimage.io as io
import skimage.transform as trans
import numpy as np
from tensorflow.keras.models import *
from tensorflow.keras.layers import *
from tensorflow.keras.optimizers import *
from tensorflow.keras.callbacks import ModelCheckpoint, LearningRateScheduler
from tensorflow.keras import backend as keras
def unet(pretrained_weights = None,input_size = (512,512,1)):
inputs = Input(input_size)
conv1 = Conv2D(64, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(inputs)
conv1 = Conv2D(64, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv1)
pool1 = MaxPooling2D(pool_size=(2, 2))(conv1)
conv2 = Conv2D(128, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(pool1)
conv2 = Conv2D(128, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv2)
pool2 = MaxPooling2D(pool_size=(2, 2))(conv2)
conv3 = Conv2D(256, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(pool2)
conv3 = Conv2D(256, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv3)
pool3 = MaxPooling2D(pool_size=(2, 2))(conv3)
conv4 = Conv2D(512, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(pool3)
conv4 = Conv2D(512, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv4)
drop4 = Dropout(0.5)(conv4)
pool4 = MaxPooling2D(pool_size=(2, 2))(drop4)
conv5 = Conv2D(1024, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(pool4)
conv5 = Conv2D(1024, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv5)
drop5 = Dropout(0.5)(conv5)
up6 = Conv2D(512, 2, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(UpSampling2D(size = (2,2))(drop5))
merge6 = concatenate([drop4,up6], axis = 3)
conv6 = Conv2D(512, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(merge6)
conv6 = Conv2D(512, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv6)
up7 = Conv2D(256, 2, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(UpSampling2D(size = (2,2))(conv6))
merge7 = concatenate([conv3,up7], axis = 3)
conv7 = Conv2D(256, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(merge7)
conv7 = Conv2D(256, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv7)
up8 = Conv2D(128, 2, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(UpSampling2D(size = (2,2))(conv7))
merge8 = concatenate([conv2,up8], axis = 3)
conv8 = Conv2D(128, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(merge8)
conv8 = Conv2D(128, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv8)
up9 = Conv2D(64, 2, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(UpSampling2D(size = (2,2))(conv8))
merge9 = concatenate([conv1,up9], axis = 3)
conv9 = Conv2D(64, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(merge9)
conv9 = Conv2D(64, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv9)
conv9 = Conv2D(2, 3, activation = 'relu', padding = 'same', kernel_initializer = 'he_normal')(conv9)
conv10 = Conv2D(1, 1, activation = 'sigmoid')(conv9)
model = Model(inputs = inputs, outputs = conv10)
model.compile(optimizer = Adam(lr = 1e-4), loss = 'binary_crossentropy', metrics = ['accuracy'])
#model.summary()
if(pretrained_weights):
model.load_weights(pretrained_weights)
return model
| 3,797 | 56.545455 | 132 | py |
llm_expository | llm_expository-main/ChatGPT_generated_code_01.py | import numpy as np
import matplotlib.pyplot as plt
def ewma(x, y, alpha):
return (1 - alpha) * x + alpha * y
def simulate_ewma(n, alpha, k, num_simulations):
arls = []
for i in range(num_simulations):
x = np.random.normal(0, 1, n)
ewma_stat = np.zeros(n)
ewma_stat[0] = x[0]
for j in range(1, n):
ewma_stat[j] = ewma(x[j], ewma_stat[j-1], alpha)
control_limit = k * np.std(x)
run_length = 0
for j in range(n):
if np.abs(ewma_stat[j]) > control_limit:
run_length = j + 1
break
arls.append(run_length)
return np.mean(arls)
n = 1000
alpha = 0.1
k = 3
num_simulations = 10000
arl = simulate_ewma(n, alpha, k, num_simulations)
print("Zero-state ARL:", arl)
| 792 | 24.580645 | 60 | py |
robust-transformers | robust-transformers-main/conftest.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# tests directory-specific settings - this file is run automatically
# by pytest before any tests are run
import doctest
import sys
import warnings
from os.path import abspath, dirname, join
# allow having multiple repository checkouts and not needing to remember to rerun
# 'pip install -e .[dev]' when switching between checkouts and running tests.
git_repo_path = abspath(join(dirname(__file__), "src"))
sys.path.insert(1, git_repo_path)
# silence FutureWarning warnings in tests since often we can't act on them until
# they become normal warnings - i.e. the tests still need to test the current functionality
warnings.simplefilter(action="ignore", category=FutureWarning)
def pytest_configure(config):
config.addinivalue_line("markers", "is_pipeline_test: mark test to run only when pipeline are tested")
config.addinivalue_line(
"markers", "is_pt_tf_cross_test: mark test to run only when PT and TF interactions are tested"
)
config.addinivalue_line(
"markers", "is_pt_flax_cross_test: mark test to run only when PT and FLAX interactions are tested"
)
config.addinivalue_line("markers", "is_staging_test: mark test to run only in the staging environment")
def pytest_addoption(parser):
from transformers.testing_utils import pytest_addoption_shared
pytest_addoption_shared(parser)
def pytest_terminal_summary(terminalreporter):
from transformers.testing_utils import pytest_terminal_summary_main
make_reports = terminalreporter.config.getoption("--make-reports")
if make_reports:
pytest_terminal_summary_main(terminalreporter, id=make_reports)
def pytest_sessionfinish(session, exitstatus):
# If no tests are collected, pytest exists with code 5, which makes the CI fail.
if exitstatus == 5:
session.exitstatus = 0
# Doctest custom flag to ignore output.
IGNORE_RESULT = doctest.register_optionflag('IGNORE_RESULT')
OutputChecker = doctest.OutputChecker
class CustomOutputChecker(OutputChecker):
def check_output(self, want, got, optionflags):
if IGNORE_RESULT & optionflags:
return True
return OutputChecker.check_output(self, want, got, optionflags)
doctest.OutputChecker = CustomOutputChecker
| 2,846 | 35.037975 | 107 | py |
robust-transformers | robust-transformers-main/setup.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Simple check list from AllenNLP repo: https://github.com/allenai/allennlp/blob/master/setup.py
To create the package for pypi.
1. Run `make pre-release` (or `make pre-patch` for a patch release) then run `make fix-copies` to fix the index of the
documentation.
2. Run Tests for Amazon Sagemaker. The documentation is located in `./tests/sagemaker/README.md`, otherwise @philschmid.
3. Unpin specific versions from setup.py that use a git install.
4. Commit these changes with the message: "Release: <VERSION>" and push.
5. Wait for the tests on master to be completed and be green (otherwise revert and fix bugs)
6. Add a tag in git to mark the release: "git tag v<VERSION> -m 'Adds tag v<VERSION> for pypi' "
Push the tag to git: git push --tags origin master
7. Build both the sources and the wheel. Do not change anything in setup.py between
creating the wheel and the source distribution (obviously).
For the wheel, run: "python setup.py bdist_wheel" in the top level directory.
(this will build a wheel for the python version you use to build it).
For the sources, run: "python setup.py sdist"
You should now have a /dist directory with both .whl and .tar.gz source versions.
8. Check that everything looks correct by uploading the package to the pypi test server:
twine upload dist/* -r pypitest
(pypi suggest using twine as other methods upload files via plaintext.)
You may have to specify the repository url, use the following command then:
twine upload dist/* -r pypitest --repository-url=https://test.pypi.org/legacy/
Check that you can install it in a virtualenv by running:
pip install -i https://testpypi.python.org/pypi transformers
Check you can run the following commands:
python -c "from transformers import pipeline; classifier = pipeline('text-classification'); print(classifier('What a nice release'))"
python -c "from transformers import *"
9. Upload the final version to actual pypi:
twine upload dist/* -r pypi
10. Copy the release notes from RELEASE.md to the tag in github once everything is looking hunky-dory.
11. Run `make post-release` (or, for a patch release, `make post-patch`). If you were on a branch for the release,
you need to go back to master before executing this.
"""
import os
import re
import shutil
from distutils.core import Command
from pathlib import Path
from setuptools import find_packages, setup
# Remove stale transformers.egg-info directory to avoid https://github.com/pypa/pip/issues/5466
stale_egg_info = Path(__file__).parent / "transformers.egg-info"
if stale_egg_info.exists():
print(
(
"Warning: {} exists.\n\n"
"If you recently updated transformers to 3.0 or later, this is expected,\n"
"but it may prevent transformers from installing in editable mode.\n\n"
"This directory is automatically generated by Python's packaging tools.\n"
"I will remove it now.\n\n"
"See https://github.com/pypa/pip/issues/5466 for details.\n"
).format(stale_egg_info)
)
shutil.rmtree(stale_egg_info)
# IMPORTANT:
# 1. all dependencies should be listed here with their version requirements if any
# 2. once modified, run: `make deps_table_update` to update src/transformers/dependency_versions_table.py
_deps = [
"Pillow",
"black~=22.0",
"codecarbon==1.2.0",
"cookiecutter==1.7.2",
"dataclasses",
"datasets",
"deepspeed>=0.5.9",
"fairscale>0.3",
"faiss-cpu",
"fastapi",
"filelock",
"flake8>=3.8.3",
"flax>=0.3.5",
"ftfy",
"fugashi>=1.0",
"GitPython<3.1.19",
"huggingface-hub>=0.1.0,<1.0",
"importlib_metadata",
"ipadic>=1.0.0,<2.0",
"isort>=5.5.4",
"jax>=0.2.8",
"jaxlib>=0.1.65",
"jieba",
"nltk",
"numpy>=1.17",
"onnxconverter-common",
"onnxruntime-tools>=1.4.2",
"onnxruntime>=1.4.0",
"optuna",
"optax>=0.0.8",
"packaging>=20.0",
"parameterized",
"phonemizer",
"protobuf",
"psutil",
"pyyaml>=5.1",
"pydantic",
"pytest",
"pytest-timeout",
"pytest-xdist",
"python>=3.6.0",
"ray[tune]",
"regex!=2019.12.17",
"requests",
"rouge-score",
"sacrebleu>=1.4.12,<2.0.0",
"sacremoses",
"sagemaker>=2.31.0",
"scikit-learn",
"sentencepiece>=0.1.91,!=0.1.92",
"sigopt",
"librosa",
"starlette",
"tensorflow-cpu>=2.3",
"tensorflow>=2.3",
"tf2onnx",
"timeout-decorator",
"timm",
"tokenizers>=0.11.1,!=0.11.3",
"torch>=1.0",
"torchaudio",
"pyctcdecode>=0.3.0",
"tqdm>=4.27",
"unidic>=1.0.2",
"unidic_lite>=1.0.7",
"uvicorn",
]
# this is a lookup table with items like:
#
# tokenizers: "tokenizers==0.9.4"
# packaging: "packaging"
#
# some of the values are versioned whereas others aren't.
deps = {b: a for a, b in (re.findall(r"^(([^!=<>~]+)(?:[!=<>~].*)?$)", x)[0] for x in _deps)}
# since we save this data in src/transformers/dependency_versions_table.py it can be easily accessed from
# anywhere. If you need to quickly access the data from this table in a shell, you can do so easily with:
#
# python -c 'import sys; from transformers.dependency_versions_table import deps; \
# print(" ".join([ deps[x] for x in sys.argv[1:]]))' tokenizers datasets
#
# Just pass the desired package names to that script as it's shown with 2 packages above.
#
# If transformers is not yet installed and the work is done from the cloned repo remember to add `PYTHONPATH=src` to the script above
#
# You can then feed this for example to `pip`:
#
# pip install -U $(python -c 'import sys; from transformers.dependency_versions_table import deps; \
# print(" ".join([ deps[x] for x in sys.argv[1:]]))' tokenizers datasets)
#
def deps_list(*pkgs):
return [deps[pkg] for pkg in pkgs]
class DepsTableUpdateCommand(Command):
"""
A custom distutils command that updates the dependency table.
usage: python setup.py deps_table_update
"""
description = "build runtime dependency table"
user_options = [
# format: (long option, short option, description).
("dep-table-update", None, "updates src/transformers/dependency_versions_table.py"),
]
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
entries = "\n".join([f' "{k}": "{v}",' for k, v in deps.items()])
content = [
"# THIS FILE HAS BEEN AUTOGENERATED. To update:",
"# 1. modify the `_deps` dict in setup.py",
"# 2. run `make deps_table_update``",
"deps = {",
entries,
"}",
"",
]
target = "src/transformers/dependency_versions_table.py"
print(f"updating {target}")
with open(target, "w", encoding="utf-8", newline="\n") as f:
f.write("\n".join(content))
extras = {}
extras["ja"] = deps_list("fugashi", "ipadic", "unidic_lite", "unidic")
extras["sklearn"] = deps_list("scikit-learn")
extras["tf"] = deps_list("tensorflow", "onnxconverter-common", "tf2onnx")
extras["tf-cpu"] = deps_list("tensorflow-cpu", "onnxconverter-common", "tf2onnx")
extras["torch"] = deps_list("torch")
if os.name == "nt": # windows
extras["retrieval"] = deps_list("datasets") # faiss is not supported on windows
extras["flax"] = [] # jax is not supported on windows
else:
extras["retrieval"] = deps_list("faiss-cpu", "datasets")
extras["flax"] = deps_list("jax", "jaxlib", "flax", "optax")
extras["tokenizers"] = deps_list("tokenizers")
extras["ftfy"] = deps_list("ftfy")
extras["onnxruntime"] = deps_list("onnxruntime", "onnxruntime-tools")
extras["onnx"] = deps_list("onnxconverter-common", "tf2onnx") + extras["onnxruntime"]
extras["modelcreation"] = deps_list("cookiecutter")
extras["sagemaker"] = deps_list("sagemaker")
extras["deepspeed"] = deps_list("deepspeed")
extras["fairscale"] = deps_list("fairscale")
extras["optuna"] = deps_list("optuna")
extras["ray"] = deps_list("ray[tune]")
extras["sigopt"] = deps_list("sigopt")
extras["integrations"] = extras["optuna"] + extras["ray"] + extras["sigopt"]
extras["serving"] = deps_list("pydantic", "uvicorn", "fastapi", "starlette")
extras["audio"] = deps_list("librosa", "pyctcdecode", "phonemizer")
# `pip install ".[speech]"` is deprecated and `pip install ".[torch-speech]"` should be used instead
extras["speech"] = deps_list("torchaudio") + extras["audio"]
extras["torch-speech"] = deps_list("torchaudio") + extras["audio"]
extras["tf-speech"] = extras["audio"]
extras["flax-speech"] = extras["audio"]
extras["vision"] = deps_list("Pillow")
extras["timm"] = deps_list("timm")
extras["codecarbon"] = deps_list("codecarbon")
extras["sentencepiece"] = deps_list("sentencepiece", "protobuf")
extras["testing"] = (
deps_list(
"pytest",
"pytest-xdist",
"timeout-decorator",
"parameterized",
"psutil",
"datasets",
"pytest-timeout",
"black",
"sacrebleu",
"rouge-score",
"nltk",
"GitPython",
)
+ extras["retrieval"]
+ extras["modelcreation"]
)
extras["quality"] = deps_list("black", "isort", "flake8", "GitPython")
extras["all"] = (
extras["tf"]
+ extras["torch"]
+ extras["flax"]
+ extras["sentencepiece"]
+ extras["tokenizers"]
+ extras["torch-speech"]
+ extras["vision"]
+ extras["integrations"]
+ extras["timm"]
+ extras["codecarbon"]
)
# Might need to add doc-builder and some specific deps in the future
extras["docs_specific"] = []
# "docs" needs "all" to resolve all the references
extras["docs"] = extras["all"] + extras["docs_specific"]
extras["dev-torch"] = (
extras['testing']
+ extras['torch']
+ extras["sentencepiece"]
+ extras["tokenizers"]
+ extras["torch-speech"]
+ extras["vision"]
+ extras["integrations"]
+ extras["timm"]
+ extras["codecarbon"]
+ extras["quality"]
+ extras["ja"]
+ extras["docs_specific"]
+ extras["sklearn"]
+ extras["modelcreation"]
+ extras["onnxruntime"]
)
extras["dev-tensorflow"] = (
extras['testing']
+ extras['tf']
+ extras["sentencepiece"]
+ extras["tokenizers"]
+ extras["vision"]
+ extras["quality"]
+ extras["docs_specific"]
+ extras["sklearn"]
+ extras["modelcreation"]
+ extras["onnx"]
+ extras["tf-speech"]
)
extras["dev"] = (
extras["all"]
+ extras["testing"]
+ extras["quality"]
+ extras["ja"]
+ extras["docs_specific"]
+ extras["sklearn"]
+ extras["modelcreation"]
)
extras["torchhub"] = deps_list(
"filelock",
"huggingface-hub",
"importlib_metadata",
"numpy",
"packaging",
"protobuf",
"regex",
"requests",
"sacremoses",
"sentencepiece",
"torch",
"tokenizers",
"tqdm",
)
# when modifying the following list, make sure to update src/transformers/dependency_versions_check.py
install_requires = [
deps["dataclasses"] + ";python_version<'3.7'", # dataclasses for Python versions that don't have it
deps["importlib_metadata"] + ";python_version<'3.8'", # importlib_metadata for Python versions that don't have it
deps["filelock"], # filesystem locks, e.g., to prevent parallel downloads
deps["huggingface-hub"],
deps["numpy"],
deps["packaging"], # utilities from PyPA to e.g., compare versions
deps["pyyaml"], # used for the model cards metadata
deps["regex"], # for OpenAI GPT
deps["requests"], # for downloading models over HTTPS
deps["sacremoses"], # for XLM
deps["tokenizers"],
deps["tqdm"], # progress bars in model download and training scripts
]
setup(
name="transformers",
version="4.18.0.dev0", # expected format is one of x.y.z.dev0, or x.y.z.rc1 or x.y.z (no to dashes, yes to dots)
author="Thomas Wolf, Lysandre Debut, Victor Sanh, Julien Chaumond, Sam Shleifer, Patrick von Platen, Sylvain Gugger, Suraj Patil, Stas Bekman, Google AI Language Team Authors, Open AI team Authors, Facebook AI Authors, Carnegie Mellon University Authors",
author_email="thomas@huggingface.co",
description="State-of-the-art Natural Language Processing for TensorFlow 2.0 and PyTorch",
long_description=open("README.md", "r", encoding="utf-8").read(),
long_description_content_type="text/markdown",
keywords="NLP deep learning transformer pytorch tensorflow BERT GPT GPT-2 google openai CMU",
license="Apache",
url="https://github.com/huggingface/transformers",
package_dir={"": "src"},
packages=find_packages("src"),
package_data={"transformers": ["py.typed"]},
zip_safe=False,
extras_require=extras,
entry_points={"console_scripts": ["transformers-cli=transformers.commands.transformers_cli:main"]},
python_requires=">=3.6.0",
install_requires=install_requires,
classifiers=[
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Developers",
"Intended Audience :: Education",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Topic :: Scientific/Engineering :: Artificial Intelligence",
],
cmdclass={"deps_table_update": DepsTableUpdateCommand},
)
| 14,253 | 33.019093 | 259 | py |
robust-transformers | robust-transformers-main/hubconf.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import sys
SRC_DIR = os.path.join(os.path.dirname(__file__), "src")
sys.path.append(SRC_DIR)
from transformers import (
AutoConfig,
AutoModel,
AutoModelForCausalLM,
AutoModelForMaskedLM,
AutoModelForQuestionAnswering,
AutoModelForSequenceClassification,
AutoTokenizer,
add_start_docstrings,
)
dependencies = ["torch", "numpy", "tokenizers", "filelock", "requests", "tqdm", "regex", "sentencepiece", "sacremoses", "importlib_metadata", "huggingface_hub"]
@add_start_docstrings(AutoConfig.__doc__)
def config(*args, **kwargs):
r"""
# Using torch.hub !
import torch
config = torch.hub.load('huggingface/transformers', 'config', 'bert-base-uncased') # Download configuration from huggingface.co and cache.
config = torch.hub.load('huggingface/transformers', 'config', './test/bert_saved_model/') # E.g. config (or model) was saved using `save_pretrained('./test/saved_model/')`
config = torch.hub.load('huggingface/transformers', 'config', './test/bert_saved_model/my_configuration.json')
config = torch.hub.load('huggingface/transformers', 'config', 'bert-base-uncased', output_attentions=True, foo=False)
assert config.output_attentions == True
config, unused_kwargs = torch.hub.load('huggingface/transformers', 'config', 'bert-base-uncased', output_attentions=True, foo=False, return_unused_kwargs=True)
assert config.output_attentions == True
assert unused_kwargs == {'foo': False}
"""
return AutoConfig.from_pretrained(*args, **kwargs)
@add_start_docstrings(AutoTokenizer.__doc__)
def tokenizer(*args, **kwargs):
r"""
# Using torch.hub !
import torch
tokenizer = torch.hub.load('huggingface/transformers', 'tokenizer', 'bert-base-uncased') # Download vocabulary from huggingface.co and cache.
tokenizer = torch.hub.load('huggingface/transformers', 'tokenizer', './test/bert_saved_model/') # E.g. tokenizer was saved using `save_pretrained('./test/saved_model/')`
"""
return AutoTokenizer.from_pretrained(*args, **kwargs)
@add_start_docstrings(AutoModel.__doc__)
def model(*args, **kwargs):
r"""
# Using torch.hub !
import torch
model = torch.hub.load('huggingface/transformers', 'model', 'bert-base-uncased') # Download model and configuration from huggingface.co and cache.
model = torch.hub.load('huggingface/transformers', 'model', './test/bert_model/') # E.g. model was saved using `save_pretrained('./test/saved_model/')`
model = torch.hub.load('huggingface/transformers', 'model', 'bert-base-uncased', output_attentions=True) # Update configuration during loading
assert model.config.output_attentions == True
# Loading from a TF checkpoint file instead of a PyTorch model (slower)
config = AutoConfig.from_pretrained('./tf_model/bert_tf_model_config.json')
model = torch.hub.load('huggingface/transformers', 'model', './tf_model/bert_tf_checkpoint.ckpt.index', from_tf=True, config=config)
"""
return AutoModel.from_pretrained(*args, **kwargs)
@add_start_docstrings(AutoModelForCausalLM.__doc__)
def modelForCausalLM(*args, **kwargs):
r"""
# Using torch.hub !
import torch
model = torch.hub.load('huggingface/transformers', 'modelForCausalLM', 'gpt2') # Download model and configuration from huggingface.co and cache.
model = torch.hub.load('huggingface/transformers', 'modelForCausalLM', './test/saved_model/') # E.g. model was saved using `save_pretrained('./test/saved_model/')`
model = torch.hub.load('huggingface/transformers', 'modelForCausalLM', 'gpt2', output_attentions=True) # Update configuration during loading
assert model.config.output_attentions == True
# Loading from a TF checkpoint file instead of a PyTorch model (slower)
config = AutoConfig.from_pretrained('./tf_model/gpt_tf_model_config.json')
model = torch.hub.load('huggingface/transformers', 'modelForCausalLM', './tf_model/gpt_tf_checkpoint.ckpt.index', from_tf=True, config=config)
"""
return AutoModelForCausalLM.from_pretrained(*args, **kwargs)
@add_start_docstrings(AutoModelForMaskedLM.__doc__)
def modelForMaskedLM(*args, **kwargs):
r"""
# Using torch.hub !
import torch
model = torch.hub.load('huggingface/transformers', 'modelForMaskedLM', 'bert-base-uncased') # Download model and configuration from huggingface.co and cache.
model = torch.hub.load('huggingface/transformers', 'modelForMaskedLM', './test/bert_model/') # E.g. model was saved using `save_pretrained('./test/saved_model/')`
model = torch.hub.load('huggingface/transformers', 'modelForMaskedLM', 'bert-base-uncased', output_attentions=True) # Update configuration during loading
assert model.config.output_attentions == True
# Loading from a TF checkpoint file instead of a PyTorch model (slower)
config = AutoConfig.from_pretrained('./tf_model/bert_tf_model_config.json')
model = torch.hub.load('huggingface/transformers', 'modelForMaskedLM', './tf_model/bert_tf_checkpoint.ckpt.index', from_tf=True, config=config)
"""
return AutoModelForMaskedLM.from_pretrained(*args, **kwargs)
@add_start_docstrings(AutoModelForSequenceClassification.__doc__)
def modelForSequenceClassification(*args, **kwargs):
r"""
# Using torch.hub !
import torch
model = torch.hub.load('huggingface/transformers', 'modelForSequenceClassification', 'bert-base-uncased') # Download model and configuration from huggingface.co and cache.
model = torch.hub.load('huggingface/transformers', 'modelForSequenceClassification', './test/bert_model/') # E.g. model was saved using `save_pretrained('./test/saved_model/')`
model = torch.hub.load('huggingface/transformers', 'modelForSequenceClassification', 'bert-base-uncased', output_attentions=True) # Update configuration during loading
assert model.config.output_attentions == True
# Loading from a TF checkpoint file instead of a PyTorch model (slower)
config = AutoConfig.from_pretrained('./tf_model/bert_tf_model_config.json')
model = torch.hub.load('huggingface/transformers', 'modelForSequenceClassification', './tf_model/bert_tf_checkpoint.ckpt.index', from_tf=True, config=config)
"""
return AutoModelForSequenceClassification.from_pretrained(*args, **kwargs)
@add_start_docstrings(AutoModelForQuestionAnswering.__doc__)
def modelForQuestionAnswering(*args, **kwargs):
r"""
# Using torch.hub !
import torch
model = torch.hub.load('huggingface/transformers', 'modelForQuestionAnswering', 'bert-base-uncased') # Download model and configuration from huggingface.co and cache.
model = torch.hub.load('huggingface/transformers', 'modelForQuestionAnswering', './test/bert_model/') # E.g. model was saved using `save_pretrained('./test/saved_model/')`
model = torch.hub.load('huggingface/transformers', 'modelForQuestionAnswering', 'bert-base-uncased', output_attentions=True) # Update configuration during loading
assert model.config.output_attentions == True
# Loading from a TF checkpoint file instead of a PyTorch model (slower)
config = AutoConfig.from_pretrained('./tf_model/bert_tf_model_config.json')
model = torch.hub.load('huggingface/transformers', 'modelForQuestionAnswering', './tf_model/bert_tf_checkpoint.ckpt.index', from_tf=True, config=config)
"""
return AutoModelForQuestionAnswering.from_pretrained(*args, **kwargs)
| 8,496 | 51.450617 | 189 | py |
robust-transformers | robust-transformers-main/examples/research_projects/longform-qa/eli5_app.py | import datasets
import numpy as np
import streamlit as st
import torch
from elasticsearch import Elasticsearch
import faiss
import transformers
from eli5_utils import (
embed_questions_for_retrieval,
make_qa_s2s_model,
qa_s2s_generate,
query_es_index,
query_qa_dense_index,
)
from transformers import AutoModel, AutoModelForSeq2SeqLM, AutoTokenizer
MODEL_TYPE = "bart"
LOAD_DENSE_INDEX = True
@st.cache(allow_output_mutation=True)
def load_models():
if LOAD_DENSE_INDEX:
qar_tokenizer = AutoTokenizer.from_pretrained("yjernite/retribert-base-uncased")
qar_model = AutoModel.from_pretrained("yjernite/retribert-base-uncased").to("cuda:0")
_ = qar_model.eval()
else:
qar_tokenizer, qar_model = (None, None)
if MODEL_TYPE == "bart":
s2s_tokenizer = AutoTokenizer.from_pretrained("yjernite/bart_eli5")
s2s_model = AutoModelForSeq2SeqLM.from_pretrained("yjernite/bart_eli5").to("cuda:0")
save_dict = torch.load("seq2seq_models/eli5_bart_model_blm_2.pth")
s2s_model.load_state_dict(save_dict["model"])
_ = s2s_model.eval()
else:
s2s_tokenizer, s2s_model = make_qa_s2s_model(
model_name="t5-small", from_file="seq2seq_models/eli5_t5_model_1024_4.pth", device="cuda:0"
)
return (qar_tokenizer, qar_model, s2s_tokenizer, s2s_model)
@st.cache(allow_output_mutation=True)
def load_indexes():
if LOAD_DENSE_INDEX:
faiss_res = faiss.StandardGpuResources()
wiki40b_passages = datasets.load_dataset(path="wiki_snippets", name="wiki40b_en_100_0")["train"]
wiki40b_passage_reps = np.memmap(
"wiki40b_passages_reps_32_l-8_h-768_b-512-512.dat",
dtype="float32",
mode="r",
shape=(wiki40b_passages.num_rows, 128),
)
wiki40b_index_flat = faiss.IndexFlatIP(128)
wiki40b_gpu_index_flat = faiss.index_cpu_to_gpu(faiss_res, 1, wiki40b_index_flat)
wiki40b_gpu_index_flat.add(wiki40b_passage_reps) # TODO fix for larger GPU
else:
wiki40b_passages, wiki40b_gpu_index_flat = (None, None)
es_client = Elasticsearch([{"host": "localhost", "port": "9200"}])
return (wiki40b_passages, wiki40b_gpu_index_flat, es_client)
@st.cache(allow_output_mutation=True)
def load_train_data():
eli5 = datasets.load_dataset("eli5", name="LFQA_reddit")
eli5_train = eli5["train_eli5"]
eli5_train_q_reps = np.memmap(
"eli5_questions_reps.dat", dtype="float32", mode="r", shape=(eli5_train.num_rows, 128)
)
eli5_train_q_index = faiss.IndexFlatIP(128)
eli5_train_q_index.add(eli5_train_q_reps)
return (eli5_train, eli5_train_q_index)
passages, gpu_dense_index, es_client = load_indexes()
qar_tokenizer, qar_model, s2s_tokenizer, s2s_model = load_models()
eli5_train, eli5_train_q_index = load_train_data()
def find_nearest_training(question, n_results=10):
q_rep = embed_questions_for_retrieval([question], qar_tokenizer, qar_model)
D, I = eli5_train_q_index.search(q_rep, n_results)
nn_examples = [eli5_train[int(i)] for i in I[0]]
return nn_examples
def make_support(question, source="wiki40b", method="dense", n_results=10):
if source == "none":
support_doc, hit_lst = (" <P> ".join(["" for _ in range(11)]).strip(), [])
else:
if method == "dense":
support_doc, hit_lst = query_qa_dense_index(
question, qar_model, qar_tokenizer, passages, gpu_dense_index, n_results
)
else:
support_doc, hit_lst = query_es_index(
question,
es_client,
index_name="english_wiki40b_snippets_100w",
n_results=n_results,
)
support_list = [
(res["article_title"], res["section_title"].strip(), res["score"], res["passage_text"]) for res in hit_lst
]
question_doc = "question: {} context: {}".format(question, support_doc)
return question_doc, support_list
@st.cache(
hash_funcs={
torch.Tensor: (lambda _: None),
transformers.models.bart.tokenization_bart.BartTokenizer: (lambda _: None),
}
)
def answer_question(
question_doc, s2s_model, s2s_tokenizer, min_len=64, max_len=256, sampling=False, n_beams=2, top_p=0.95, temp=0.8
):
with torch.no_grad():
answer = qa_s2s_generate(
question_doc,
s2s_model,
s2s_tokenizer,
num_answers=1,
num_beams=n_beams,
min_len=min_len,
max_len=max_len,
do_sample=sampling,
temp=temp,
top_p=top_p,
top_k=None,
max_input_length=1024,
device="cuda:0",
)[0]
return (answer, support_list)
st.title("Long Form Question Answering with ELI5")
# Start sidebar
header_html = "<img src='https://huggingface.co/front/assets/huggingface_logo.svg'>"
header_full = """
<html>
<head>
<style>
.img-container {
padding-left: 90px;
padding-right: 90px;
padding-top: 50px;
padding-bottom: 50px;
background-color: #f0f3f9;
}
</style>
</head>
<body>
<span class="img-container"> <!-- Inline parent element -->
%s
</span>
</body>
</html>
""" % (
header_html,
)
st.sidebar.markdown(
header_full,
unsafe_allow_html=True,
)
# Long Form QA with ELI5 and Wikipedia
description = """
This demo presents a model trained to [provide long-form answers to open-domain questions](https://yjernite.github.io/lfqa.html).
First, a document retriever fetches a set of relevant Wikipedia passages given the question from the [Wiki40b](https://research.google/pubs/pub49029/) dataset,
a pre-processed fixed snapshot of Wikipedia.
"""
st.sidebar.markdown(description, unsafe_allow_html=True)
action_list = [
"Answer the question",
"View the retrieved document only",
"View the most similar ELI5 question and answer",
"Show me everything, please!",
]
demo_options = st.sidebar.checkbox("Demo options")
if demo_options:
action_st = st.sidebar.selectbox(
"",
action_list,
index=3,
)
action = action_list.index(action_st)
show_type = st.sidebar.selectbox(
"",
["Show full text of passages", "Show passage section titles"],
index=0,
)
show_passages = show_type == "Show full text of passages"
else:
action = 3
show_passages = True
retrieval_options = st.sidebar.checkbox("Retrieval options")
if retrieval_options:
retriever_info = """
### Information retriever options
The **sparse** retriever uses ElasticSearch, while the **dense** retriever uses max-inner-product search between a question and passage embedding
trained using the [ELI5](https://arxiv.org/abs/1907.09190) questions-answer pairs.
The answer is then generated by sequence to sequence model which takes the question and retrieved document as input.
"""
st.sidebar.markdown(retriever_info)
wiki_source = st.sidebar.selectbox("Which Wikipedia format should the model use?", ["wiki40b", "none"])
index_type = st.sidebar.selectbox("Which Wikipedia indexer should the model use?", ["dense", "sparse", "mixed"])
else:
wiki_source = "wiki40b"
index_type = "dense"
sampled = "beam"
n_beams = 2
min_len = 64
max_len = 256
top_p = None
temp = None
generate_options = st.sidebar.checkbox("Generation options")
if generate_options:
generate_info = """
### Answer generation options
The sequence-to-sequence model was initialized with [BART](https://huggingface.co/facebook/bart-large)
weights and fine-tuned on the ELI5 QA pairs and retrieved documents. You can use the model for greedy decoding with
**beam** search, or **sample** from the decoder's output probabilities.
"""
st.sidebar.markdown(generate_info)
sampled = st.sidebar.selectbox("Would you like to use beam search or sample an answer?", ["beam", "sampled"])
min_len = st.sidebar.slider(
"Minimum generation length", min_value=8, max_value=256, value=64, step=8, format=None, key=None
)
max_len = st.sidebar.slider(
"Maximum generation length", min_value=64, max_value=512, value=256, step=16, format=None, key=None
)
if sampled == "beam":
n_beams = st.sidebar.slider("Beam size", min_value=1, max_value=8, value=2, step=None, format=None, key=None)
else:
top_p = st.sidebar.slider(
"Nucleus sampling p", min_value=0.1, max_value=1.0, value=0.95, step=0.01, format=None, key=None
)
temp = st.sidebar.slider(
"Temperature", min_value=0.1, max_value=1.0, value=0.7, step=0.01, format=None, key=None
)
n_beams = None
# start main text
questions_list = [
"<MY QUESTION>",
"How do people make chocolate?",
"Why do we get a fever when we are sick?",
"How can different animals perceive different colors?",
"What is natural language processing?",
"What's the best way to treat a sunburn?",
"What exactly are vitamins ?",
"How does nuclear energy provide electricity?",
"What's the difference between viruses and bacteria?",
"Why are flutes classified as woodwinds when most of them are made out of metal ?",
"Why do people like drinking coffee even though it tastes so bad?",
"What happens when wine ages? How does it make the wine taste better?",
"If an animal is an herbivore, where does it get the protein that it needs to survive if it only eats grass?",
"How can we set a date to the beginning or end of an artistic period? Doesn't the change happen gradually?",
"How does New Zealand have so many large bird predators?",
]
question_s = st.selectbox(
"What would you like to ask? ---- select <MY QUESTION> to enter a new query",
questions_list,
index=1,
)
if question_s == "<MY QUESTION>":
question = st.text_input("Enter your question here:", "")
else:
question = question_s
if st.button("Show me!"):
if action in [0, 1, 3]:
if index_type == "mixed":
_, support_list_dense = make_support(question, source=wiki_source, method="dense", n_results=10)
_, support_list_sparse = make_support(question, source=wiki_source, method="sparse", n_results=10)
support_list = []
for res_d, res_s in zip(support_list_dense, support_list_sparse):
if tuple(res_d) not in support_list:
support_list += [tuple(res_d)]
if tuple(res_s) not in support_list:
support_list += [tuple(res_s)]
support_list = support_list[:10]
question_doc = "<P> " + " <P> ".join([res[-1] for res in support_list])
else:
question_doc, support_list = make_support(question, source=wiki_source, method=index_type, n_results=10)
if action in [0, 3]:
answer, support_list = answer_question(
question_doc,
s2s_model,
s2s_tokenizer,
min_len=min_len,
max_len=int(max_len),
sampling=(sampled == "sampled"),
n_beams=n_beams,
top_p=top_p,
temp=temp,
)
st.markdown("### The model generated answer is:")
st.write(answer)
if action in [0, 1, 3] and wiki_source != "none":
st.markdown("--- \n ### The model is drawing information from the following Wikipedia passages:")
for i, res in enumerate(support_list):
wiki_url = "https://en.wikipedia.org/wiki/{}".format(res[0].replace(" ", "_"))
sec_titles = res[1].strip()
if sec_titles == "":
sections = "[{}]({})".format(res[0], wiki_url)
else:
sec_list = sec_titles.split(" & ")
sections = " & ".join(
["[{}]({}#{})".format(sec.strip(), wiki_url, sec.strip().replace(" ", "_")) for sec in sec_list]
)
st.markdown(
"{0:02d} - **Article**: {1:<18} <br> _Section_: {2}".format(i + 1, res[0], sections),
unsafe_allow_html=True,
)
if show_passages:
st.write(
'> <span style="font-family:arial; font-size:10pt;">' + res[-1] + "</span>", unsafe_allow_html=True
)
if action in [2, 3]:
nn_train_list = find_nearest_training(question)
train_exple = nn_train_list[0]
st.markdown(
"--- \n ### The most similar question in the ELI5 training set was: \n\n {}".format(train_exple["title"])
)
answers_st = [
"{}. {}".format(i + 1, " \n".join([line.strip() for line in ans.split("\n") if line.strip() != ""]))
for i, (ans, sc) in enumerate(zip(train_exple["answers"]["text"], train_exple["answers"]["score"]))
if i == 0 or sc > 2
]
st.markdown("##### Its answers were: \n\n {}".format("\n".join(answers_st)))
disclaimer = """
---
**Disclaimer**
*The intent of this app is to provide some (hopefully entertaining) insights into the behavior of a current LFQA system.
Evaluating biases of such a model and ensuring factual generations are still very much open research problems.
Therefore, until some significant progress is achieved, we caution against using the generated answers for practical purposes.*
"""
st.sidebar.markdown(disclaimer, unsafe_allow_html=True)
| 13,474 | 37.28125 | 159 | py |
robust-transformers | robust-transformers-main/examples/research_projects/longform-qa/eli5_utils.py | import functools
import math
import os # noqa: F401
from random import choice, randint
from time import time
import datasets # noqa: F401
import numpy as np
import pandas as pd
import torch
import torch.utils.checkpoint as checkpoint
from elasticsearch import Elasticsearch # noqa: F401
from elasticsearch.helpers import bulk, streaming_bulk # noqa: F401
from torch import nn
from torch.utils.data import DataLoader, Dataset, RandomSampler, SequentialSampler
from tqdm import tqdm
import faiss # noqa: F401
from transformers import AdamW, AutoModel, AutoModelForSeq2SeqLM, AutoTokenizer, get_linear_schedule_with_warmup
pd.set_option("display.max_colwidth", None)
###############
# Sparse index
###############
def make_es_index_snippets(es_client, passages_dset, index_name="english_wiki_kilt_snippets_100w"):
index_config = {
"settings": {
"number_of_shards": 1,
"analysis": {"analyzer": {"stop_standard": {"type": "standard", " stopwords": "_english_"}}},
},
"mappings": {
"properties": {
"article_title": {"type": "text", "analyzer": "standard", "similarity": "BM25"},
"section_title": {"type": "text", "analyzer": "standard", "similarity": "BM25"},
"passage_text": {"type": "text", "analyzer": "standard", "similarity": "BM25"},
}
},
}
es_client.indices.create(index=index_name, body=index_config)
number_of_docs = passages_dset.num_rows
progress = tqdm(unit="docs", total=number_of_docs)
successes = 0
def passage_generator():
for passage in passages_dset:
yield passage
# create the ES index
for ok, action in streaming_bulk(
client=es_client,
index=index_name,
actions=passage_generator(),
):
progress.update(1)
successes += ok
print("Indexed %d documents" % (successes,))
def query_es_index(question, es_client, index_name="english_wiki_kilt_snippets_100w", n_results=10, min_length=20):
q = question.lower()
banned = ["how", "why", "what", "where", "which", "do", "does", "is", "?", "eli5", "eli5:"]
q = " ".join([w for w in q.split() if w not in banned])
response = es_client.search(
index=index_name,
body={
"query": {
"multi_match": {
"query": q,
"fields": ["article_title", "section_title", "passage_text^2"],
"type": "cross_fields",
}
},
"size": 2 * n_results,
},
)
hits = response["hits"]["hits"]
support_doc = "<P> " + " <P> ".join([hit["_source"]["passage_text"] for hit in hits])
res_list = [dict([(k, hit["_source"][k]) for k in hit["_source"] if k != "passage_text"]) for hit in hits]
for r, hit in zip(res_list, hits):
r["passage_id"] = hit["_id"]
r["score"] = hit["_score"]
r["passage_text"] = hit["_source"]["passage_text"]
res_list = [res for res in res_list if len(res["passage_text"].split()) > min_length][:n_results]
return support_doc, res_list
###############
# ELI5 retriever training
###############
class ELI5DatasetQARetriver(Dataset):
def __init__(self, examples_array, extra_answer_threshold=3, min_answer_length=64, training=True, n_samples=None):
self.data = examples_array
self.answer_thres = extra_answer_threshold
self.min_length = min_answer_length
self.training = training
self.n_samples = self.data.num_rows if n_samples is None else n_samples
def __len__(self):
return self.n_samples
def make_example(self, idx):
example = self.data[idx]
question = example["title"]
if self.training:
answers = [a for i, (a, sc) in enumerate(zip(example["answers"]["text"], example["answers"]["score"]))]
answer_tab = choice(answers).split(" ")
start_idx = randint(0, max(0, len(answer_tab) - self.min_length))
answer_span = " ".join(answer_tab[start_idx:])
else:
answer_span = example["answers"]["text"][0]
return (question, answer_span)
def __getitem__(self, idx):
return self.make_example(idx % self.data.num_rows)
class RetrievalQAEmbedder(nn.Module):
def __init__(self, sent_encoder, dim):
super(RetrievalQAEmbedder, self).__init__()
self.sent_encoder = sent_encoder
self.output_dim = 128
self.project_q = nn.Linear(dim, self.output_dim, bias=False)
self.project_a = nn.Linear(dim, self.output_dim, bias=False)
self.ce_loss = nn.CrossEntropyLoss(reduction="mean")
def embed_sentences_checkpointed(self, input_ids, attention_mask, checkpoint_batch_size=-1):
# reproduces BERT forward pass with checkpointing
if checkpoint_batch_size < 0 or input_ids.shape[0] < checkpoint_batch_size:
return self.sent_encoder(input_ids, attention_mask=attention_mask)[1]
else:
# prepare implicit variables
device = input_ids.device
input_shape = input_ids.size()
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
head_mask = [None] * self.sent_encoder.config.num_hidden_layers
extended_attention_mask: torch.Tensor = self.sent_encoder.get_extended_attention_mask(
attention_mask, input_shape, device
)
# define function for checkpointing
def partial_encode(*inputs):
encoder_outputs = self.sent_encoder.encoder(
inputs[0],
attention_mask=inputs[1],
head_mask=head_mask,
)
sequence_output = encoder_outputs[0]
pooled_output = self.sent_encoder.pooler(sequence_output)
return pooled_output
# run embedding layer on everything at once
embedding_output = self.sent_encoder.embeddings(
input_ids=input_ids, position_ids=None, token_type_ids=token_type_ids, inputs_embeds=None
)
# run encoding and pooling on one mini-batch at a time
pooled_output_list = []
for b in range(math.ceil(input_ids.shape[0] / checkpoint_batch_size)):
b_embedding_output = embedding_output[b * checkpoint_batch_size : (b + 1) * checkpoint_batch_size]
b_attention_mask = extended_attention_mask[b * checkpoint_batch_size : (b + 1) * checkpoint_batch_size]
pooled_output = checkpoint.checkpoint(partial_encode, b_embedding_output, b_attention_mask)
pooled_output_list.append(pooled_output)
return torch.cat(pooled_output_list, dim=0)
def embed_questions(self, q_ids, q_mask, checkpoint_batch_size=-1):
q_reps = self.embed_sentences_checkpointed(q_ids, q_mask, checkpoint_batch_size)
return self.project_q(q_reps)
def embed_answers(self, a_ids, a_mask, checkpoint_batch_size=-1):
a_reps = self.embed_sentences_checkpointed(a_ids, a_mask, checkpoint_batch_size)
return self.project_a(a_reps)
def forward(self, q_ids, q_mask, a_ids, a_mask, checkpoint_batch_size=-1):
device = q_ids.device
q_reps = self.embed_questions(q_ids, q_mask, checkpoint_batch_size)
a_reps = self.embed_answers(a_ids, a_mask, checkpoint_batch_size)
compare_scores = torch.mm(q_reps, a_reps.t())
loss_qa = self.ce_loss(compare_scores, torch.arange(compare_scores.shape[1]).to(device))
loss_aq = self.ce_loss(compare_scores.t(), torch.arange(compare_scores.shape[0]).to(device))
loss = (loss_qa + loss_aq) / 2
return loss
def make_qa_retriever_model(model_name="google/bert_uncased_L-8_H-512_A-8", from_file=None, device="cuda:0"):
tokenizer = AutoTokenizer.from_pretrained(model_name)
bert_model = AutoModel.from_pretrained(model_name).to(device)
# run bert_model on a dummy batch to get output dimension
d_ids = torch.LongTensor(
[[bert_model.config.bos_token_id if bert_model.config.bos_token_id is not None else 1]]
).to(device)
d_mask = torch.LongTensor([[1]]).to(device)
sent_dim = bert_model(d_ids, attention_mask=d_mask)[1].shape[-1]
qa_embedder = RetrievalQAEmbedder(bert_model, sent_dim).to(device)
if from_file is not None:
param_dict = torch.load(from_file) # has model weights, optimizer, and scheduler states
qa_embedder.load_state_dict(param_dict["model"])
return tokenizer, qa_embedder
def make_qa_retriever_batch(qa_list, tokenizer, max_len=64, device="cuda:0"):
q_ls = [q for q, a in qa_list]
a_ls = [a for q, a in qa_list]
q_toks = tokenizer(q_ls, max_length=max_len, padding="max_length", truncation=True)
q_ids, q_mask = (
torch.LongTensor(q_toks["input_ids"]).to(device),
torch.LongTensor(q_toks["attention_mask"]).to(device),
)
a_toks = tokenizer(a_ls, max_length=max_len, padding="max_length", truncation=True)
a_ids, a_mask = (
torch.LongTensor(a_toks["input_ids"]).to(device),
torch.LongTensor(a_toks["attention_mask"]).to(device),
)
return (q_ids, q_mask, a_ids, a_mask)
def train_qa_retriever_epoch(model, dataset, tokenizer, optimizer, scheduler, args, e=0):
model.train()
# make iterator
train_sampler = RandomSampler(dataset)
model_collate_fn = functools.partial(
make_qa_retriever_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
for step, batch in enumerate(epoch_iterator):
q_ids, q_mask, a_ids, a_mask = batch
pre_loss = model(q_ids, q_mask, a_ids, a_mask, checkpoint_batch_size=args.checkpoint_batch_size)
loss = pre_loss.sum()
# optimizer
loss.backward()
optimizer.step()
scheduler.step()
model.zero_grad()
# some printing within the epoch
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0 or step == 1:
print(
"{:2d} {:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
e,
step,
len(dataset) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
loc_loss = 0
loc_steps = 0
def train_qa_retriever_joint_epoch(model, dataset_list, tokenizer, optimizer, scheduler, args, e=0):
model.train()
model_collate_fn = functools.partial(
make_qa_retriever_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
# make iterator
train_samplers = [RandomSampler(dataset) for dataset in dataset_list]
data_loaders = [
DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
for dataset, train_sampler in zip(dataset_list, train_samplers)
]
iterators = [iter(dloader) for dloader in data_loaders]
joint_iter = zip(*iterators)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
for step, (batches,) in enumerate(zip(joint_iter)):
for batch in batches:
q_ids, q_mask, a_ids, a_mask = batch
loss = model(q_ids, q_mask, a_ids, a_mask, checkpoint_batch_size=args.checkpoint_batch_size)
# optimizer
loss.backward()
optimizer.step()
scheduler.step()
model.zero_grad()
# some printing within the epoch
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0:
print(
"{:2d} {:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
e,
step,
len(dataset_list[0]) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
loc_loss = 0
loc_steps = 0
def evaluate_qa_retriever(model, dataset, tokenizer, args):
model.eval()
# make iterator
eval_sampler = SequentialSampler(dataset)
model_collate_fn = functools.partial(
make_qa_retriever_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=eval_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
tot_loss = 0.0
with torch.no_grad():
for step, batch in enumerate(epoch_iterator):
q_ids, q_mask, a_ids, a_mask = batch
loss = model(q_ids, q_mask, a_ids, a_mask)
tot_loss += loss.item()
return tot_loss / (step + 1)
def train_qa_retriever(qar_model, qar_tokenizer, qar_train_dset, qar_valid_dset, qar_args):
qar_optimizer = AdamW(qar_model.parameters(), lr=qar_args.learning_rate, eps=1e-8)
qar_scheduler = get_linear_schedule_with_warmup(
qar_optimizer,
num_warmup_steps=100,
num_training_steps=(qar_args.num_epochs + 1) * math.ceil(len(qar_train_dset) / qar_args.batch_size),
)
for e in range(qar_args.num_epochs):
train_qa_retriever_epoch(qar_model, qar_train_dset, qar_tokenizer, qar_optimizer, qar_scheduler, qar_args, e)
m_save_dict = {
"model": qar_model.state_dict(),
"optimizer": qar_optimizer.state_dict(),
"scheduler": qar_scheduler.state_dict(),
}
print("Saving model {}".format(qar_args.model_save_name))
torch.save(m_save_dict, "{}_{}.pth".format(qar_args.model_save_name, e))
eval_loss = evaluate_qa_retriever(qar_model, qar_valid_dset, qar_tokenizer, qar_args)
print("Evaluation loss epoch {:4d}: {:.3f}".format(e, eval_loss))
###############
# ELI5 seq2seq model training
###############
class ELI5DatasetS2S(Dataset):
def __init__(
self, examples_array, make_doc_fun=None, extra_answer_threshold=3, document_cache=None, training=True
):
self.training = training
self.data = examples_array
self.make_doc_function = make_doc_fun
self.document_cache = {} if document_cache is None else document_cache
assert not (make_doc_fun is None and document_cache is None)
# make index of specific question-answer pairs from multi-answers
if self.training:
self.qa_id_list = [
(i, j)
for i, qa in enumerate(self.data)
for j, (a, sc) in enumerate(zip(qa["answers"]["text"], qa["answers"]["score"]))
if j == 0 or sc >= extra_answer_threshold
]
else:
self.qa_id_list = [(i, 0) for i in range(self.data.num_rows)]
def __len__(self):
return len(self.qa_id_list)
def make_example(self, idx):
i, j = self.qa_id_list[idx]
example = self.data[i]
question = example["title"] + " " + example["selftext"]
answer = example["answers"]["text"][j]
q_id = example["q_id"]
if self.make_doc_function is not None:
self.document_cache[q_id] = self.document_cache.get(q_id, self.make_doc_function(example["title"]))
document = self.document_cache[q_id]
in_st = "question: {} context: {}".format(
question.lower().replace(" --t--", "").strip(),
document.lower().strip(),
)
out_st = answer
return (in_st, out_st)
def __getitem__(self, idx):
return self.make_example(idx)
def make_qa_s2s_model(model_name="facebook/bart-large", from_file=None, device="cuda:0"):
tokenizer = AutoTokenizer.from_pretrained(model_name)
model = AutoModelForSeq2SeqLM.from_pretrained(model_name).to(device)
if from_file is not None:
param_dict = torch.load(from_file) # has model weights, optimizer, and scheduler states
model.load_state_dict(param_dict["model"])
return tokenizer, model
def make_qa_s2s_batch(qa_list, tokenizer, max_len=64, max_a_len=360, device="cuda:0"):
q_ls = [q for q, a in qa_list]
a_ls = [a for q, a in qa_list]
q_toks = tokenizer(q_ls, max_length=max_len, padding="max_length", truncation=True)
q_ids, q_mask = (
torch.LongTensor(q_toks["input_ids"]).to(device),
torch.LongTensor(q_toks["attention_mask"]).to(device),
)
a_toks = tokenizer(a_ls, max_length=min(max_len, max_a_len), padding="max_length", truncation=True)
a_ids, a_mask = (
torch.LongTensor(a_toks["input_ids"]).to(device),
torch.LongTensor(a_toks["attention_mask"]).to(device),
)
lm_labels = a_ids[:, 1:].contiguous().clone()
lm_labels[a_mask[:, 1:].contiguous() == 0] = -100
model_inputs = {
"input_ids": q_ids,
"attention_mask": q_mask,
"decoder_input_ids": a_ids[:, :-1].contiguous(),
"lm_labels": lm_labels,
}
return model_inputs
def train_qa_s2s_epoch(model, dataset, tokenizer, optimizer, scheduler, args, e=0, curriculum=False):
model.train()
# make iterator
if curriculum:
train_sampler = SequentialSampler(dataset)
else:
train_sampler = RandomSampler(dataset)
model_collate_fn = functools.partial(
make_qa_s2s_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
for step, batch_inputs in enumerate(epoch_iterator):
pre_loss = model(**batch_inputs)[0]
loss = pre_loss.sum() / pre_loss.shape[0]
loss.backward()
# optimizer
if step % args.backward_freq == 0:
optimizer.step()
scheduler.step()
model.zero_grad()
# some printing within the epoch
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0 or step == 1:
print(
"{:2d} {:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
e,
step,
len(dataset) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
loc_loss = 0
loc_steps = 0
def eval_qa_s2s_epoch(model, dataset, tokenizer, args):
model.eval()
# make iterator
train_sampler = SequentialSampler(dataset)
model_collate_fn = functools.partial(
make_qa_s2s_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
with torch.no_grad():
for step, batch_inputs in enumerate(epoch_iterator):
pre_loss = model(**batch_inputs)[0]
loss = pre_loss.sum() / pre_loss.shape[0]
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0:
print(
"{:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
step,
len(dataset) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
print(
"Total \t L: {:.3f} \t -- {:.3f}".format(
loc_loss / loc_steps,
time() - st_time,
)
)
def train_qa_s2s(qa_s2s_model, qa_s2s_tokenizer, s2s_train_dset, s2s_valid_dset, s2s_args):
s2s_optimizer = AdamW(qa_s2s_model.parameters(), lr=s2s_args.learning_rate, eps=1e-8)
s2s_scheduler = get_linear_schedule_with_warmup(
s2s_optimizer,
num_warmup_steps=400,
num_training_steps=(s2s_args.num_epochs + 1) * math.ceil(len(s2s_train_dset) / s2s_args.batch_size),
)
for e in range(s2s_args.num_epochs):
train_qa_s2s_epoch(
qa_s2s_model,
s2s_train_dset,
qa_s2s_tokenizer,
s2s_optimizer,
s2s_scheduler,
s2s_args,
e,
curriculum=(e == 0),
)
m_save_dict = {
"model": qa_s2s_model.state_dict(),
"optimizer": s2s_optimizer.state_dict(),
"scheduler": s2s_scheduler.state_dict(),
}
print("Saving model {}".format(s2s_args.model_save_name))
eval_qa_s2s_epoch(qa_s2s_model, s2s_valid_dset, qa_s2s_tokenizer, s2s_args)
torch.save(m_save_dict, "{}_{}.pth".format(s2s_args.model_save_name, e))
# generate answer from input "question: ... context: <p> ..."
def qa_s2s_generate(
question_doc,
qa_s2s_model,
qa_s2s_tokenizer,
num_answers=1,
num_beams=None,
min_len=64,
max_len=256,
do_sample=False,
temp=1.0,
top_p=None,
top_k=None,
max_input_length=512,
device="cuda:0",
):
model_inputs = make_qa_s2s_batch(
[(question_doc, "A")],
qa_s2s_tokenizer,
max_input_length,
device=device,
)
n_beams = num_answers if num_beams is None else max(num_beams, num_answers)
generated_ids = qa_s2s_model.generate(
input_ids=model_inputs["input_ids"],
attention_mask=model_inputs["attention_mask"],
min_length=min_len,
max_length=max_len,
do_sample=do_sample,
early_stopping=True,
num_beams=1 if do_sample else n_beams,
temperature=temp,
top_k=top_k,
top_p=top_p,
eos_token_id=qa_s2s_tokenizer.eos_token_id,
no_repeat_ngram_size=3,
num_return_sequences=num_answers,
decoder_start_token_id=qa_s2s_tokenizer.bos_token_id,
)
return [qa_s2s_tokenizer.decode(ans_ids, skip_special_tokens=True).strip() for ans_ids in generated_ids]
###############
# ELI5-trained retrieval model usage
###############
def embed_passages_for_retrieval(passages, tokenizer, qa_embedder, max_length=128, device="cuda:0"):
a_toks = tokenizer(passages, max_length=max_length, padding="max_length", truncation=True)
a_ids, a_mask = (
torch.LongTensor(a_toks["input_ids"]).to(device),
torch.LongTensor(a_toks["attention_mask"]).to(device),
)
with torch.no_grad():
a_reps = qa_embedder.embed_answers(a_ids, a_mask).cpu().type(torch.float)
return a_reps.numpy()
def embed_questions_for_retrieval(q_ls, tokenizer, qa_embedder, device="cuda:0"):
q_toks = tokenizer(q_ls, max_length=128, padding="max_length", truncation=True)
q_ids, q_mask = (
torch.LongTensor(q_toks["input_ids"]).to(device),
torch.LongTensor(q_toks["attention_mask"]).to(device),
)
with torch.no_grad():
q_reps = qa_embedder.embed_questions(q_ids, q_mask).cpu().type(torch.float)
return q_reps.numpy()
def make_qa_dense_index(
qa_embedder,
tokenizer,
passages_dset,
batch_size=512,
max_length=128,
index_name="kilt_passages_reps.dat",
dtype="float32",
device="cuda:0",
):
st_time = time()
fp = np.memmap(index_name, dtype=dtype, mode="w+", shape=(passages_dset.num_rows, 128))
n_batches = math.ceil(passages_dset.num_rows / batch_size)
for i in range(n_batches):
passages = [p for p in passages_dset[i * batch_size : (i + 1) * batch_size]["passage_text"]]
reps = embed_passages_for_retrieval(passages, tokenizer, qa_embedder, max_length, device)
fp[i * batch_size : (i + 1) * batch_size] = reps
if i % 50 == 0:
print(i, time() - st_time)
def evaluate_retriever(qa_list, retriever_func, scoring_func, n_ret=10, verbose=False):
total_retriever_time = 0.0
total_retriever_score = 0.0
st_time = time()
for i, (question, answer) in enumerate(qa_list):
r_time = time()
retrieved_passages = retriever_func(question, n_ret)
total_retriever_time += time() - r_time
total_retriever_score += scoring_func(retrieved_passages, answer)
if verbose and ((i + 1) % 500 == 0 or i <= 1):
print(
"{:03d}: S-{:.4f} T-{:.4f} | {:.2f}".format(
i + 1, total_retriever_score / (i + 1), total_retriever_time / (i + 1), time() - st_time
)
)
return {"idf_recall": total_retriever_score / (i + 1), "retrieval_time": total_retriever_time / (i + 1)}
# build a support document for the question out of Wikipedia snippets
def query_qa_dense_index(
question, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10, min_length=20, device="cuda:0"
):
q_rep = embed_questions_for_retrieval([question], tokenizer, qa_embedder, device=device)
D, I = wiki_index.search(q_rep, 2 * n_results)
res_passages = [wiki_passages[int(i)] for i in I[0]]
support_doc = "<P> " + " <P> ".join([p["passage_text"] for p in res_passages])
res_list = [dict([(k, p[k]) for k in wiki_passages.column_names]) for p in res_passages]
res_list = [res for res in res_list if len(res["passage_text"].split()) > min_length][:n_results]
for r, sc in zip(res_list, D[0]):
r["score"] = float(sc)
return support_doc, res_list
def batch_query_qa_dense_index(questions, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10):
q_rep = embed_questions_for_retrieval(questions, tokenizer, qa_embedder)
D, I = wiki_index.search(q_rep, n_results)
res_passages_lst = [[wiki_passages[int(i)] for i in i_lst] for i_lst in I]
support_doc_lst = [
"<P> " + " <P> ".join([p["passage_text"] for p in res_passages]) for res_passages in res_passages_lst
]
all_res_lists = []
for (res_passages, dl) in zip(res_passages_lst, D):
res_list = [dict([(k, p[k]) for k in wiki_passages.column_names]) for p in res_passages]
for r, sc in zip(res_list, dl):
r["score"] = float(sc)
all_res_lists += [res_list[:]]
return support_doc_lst, all_res_lists
# find nearest neighbors of an answer or declarative text in Wikipedia snippets
def query_qa_dense_index_nn(passage, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10, min_length=20):
a_rep = embed_passages_for_retrieval([passage], tokenizer, qa_embedder)
D, I = wiki_index.search(a_rep, 2 * n_results)
res_passages = [wiki_passages[int(i)] for i in I[0]]
support_doc = "<P> " + " <P> ".join([p["passage_text"] for p in res_passages])
res_list = [dict([(k, p[k]) for k in wiki_passages.column_names]) for p in res_passages]
res_list = [res for res in res_list if len(res["passage_text"].split()) > min_length][:n_results]
for r, sc, i in zip(res_list, D[0], I[0]):
r["passage_id"] = int(i)
r["score"] = float(sc)
return support_doc, res_list
def batch_query_qa_dense_index_nn(passages, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10):
a_reps = embed_passages_for_retrieval(passages, tokenizer, qa_embedder)
D, I = wiki_index.search(a_reps, n_results)
res_passages_lst = [[wiki_passages[int(i)] for i in i_lst] for i_lst in I]
support_doc_lst = [
"<P> " + " <P> ".join([p["passage_text"] for p in res_passages]) for res_passages in res_passages_lst
]
all_res_lists = []
for (res_passages, dl, il) in zip(res_passages_lst, D, I):
res_list = [dict([(k, p[k]) for k in wiki_passages.column_names]) for p in res_passages]
for r, sc, i in zip(res_list, dl, il):
r["passage_id"] = int(i)
r["score"] = float(sc)
all_res_lists += [res_list[:]]
return support_doc_lst, all_res_lists
| 28,299 | 40.07402 | 119 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/preprocessing.py | import gzip
import multiprocessing
import os
import shutil
import time
import numpy as np
from datasets import load_dataset
from arguments import PreprocessingArguments
from transformers import HfArgumentParser
def get_hash(example):
"""Get hash of content field."""
return {"hash": hash(example["content"])}
def line_stats(example):
"""Calculates mean and max line length of file."""
line_lengths = [len(line) for line in example["content"].splitlines()]
return {"line_mean": np.mean(line_lengths), "line_max": max(line_lengths)}
def alpha_stats(example):
"""Calculates mean and max line length of file."""
alpha_frac = np.mean([c.isalnum() for c in example["content"]])
return {"alpha_frac": alpha_frac}
def check_uniques(example, uniques):
"""Check if current hash is still in set of unique hashes and remove if true."""
if example["hash"] in uniques:
uniques.remove(example["hash"])
return True
else:
return False
def is_autogenerated(example, scan_width=5):
"""Check if file is autogenerated by looking for keywords in the first few lines of the file."""
keywords = ["auto-generated", "autogenerated", "automatically generated"]
lines = example["content"].splitlines()
for _, line in zip(range(scan_width), lines):
for keyword in keywords:
if keyword in line.lower():
return {"autogenerated": True}
else:
return {"autogenerated": False}
def preprocess(example):
"""Chain all preprocessing steps into one function to not fill cache."""
results = dict()
results.update(get_hash(example))
results.update(line_stats(example))
results.update(alpha_stats(example))
results.update(is_autogenerated(example))
return results
def filter(example, uniques, args):
"""Filter dataset with heuristics."""
if not check_uniques(example, uniques):
return False
elif example["autogenerated"]:
return False
elif example["line_max"] > args.line_max:
return False
elif example["line_mean"] > args.line_mean:
return False
elif example["alpha_frac"] < args.alpha_frac:
return False
else:
return True
def compress_file(file_path):
"""Compress a file with g-zip."""
with open(file_path, "rb") as f_in:
with gzip.open(file_path + ".gz", "wb", compresslevel=6) as f_out:
shutil.copyfileobj(f_in, f_out)
os.unlink(file_path)
# Settings
parser = HfArgumentParser(PreprocessingArguments)
args = parser.parse_args()
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
# Load dataset
t_start = time.time()
ds = load_dataset(args.dataset_name, split="train")
print(f"Time to load dataset: {time.time()-t_start:.2f}")
# Run preprocessing
t_start = time.time()
ds = ds.map(preprocess, num_proc=args.num_workers)
print(f"Time to preprocess dataset: {time.time()-t_start:.2f}")
# Deduplicate hashes
uniques = set(ds.unique("hash"))
frac = len(uniques) / len(ds)
print(f"Fraction of duplicates: {1-frac:.2%}")
# Deduplicate data and apply heuristics
t_start = time.time()
ds_filter = ds.filter(filter, fn_kwargs={"uniques": uniques, "args": args})
print(f"Time to filter dataset: {time.time()-t_start:.2f}")
print(f"Size of filtered dataset: {len(ds_filter)}")
# Save data in batches of samples_per_file
if not os.path.exists(args.output_dir):
os.makedirs(args.output_dir)
t_start = time.time()
for file_number, index in enumerate(range(0, len(ds_filter), args.samples_per_file)):
file_path = f"{args.output_dir}/file-{file_number+1:012}.json"
end_index = min(len(ds_filter), index + args.samples_per_file)
ds_filter.select(list(range(index, end_index))).to_json(file_path)
compress_file(file_path)
print(f"Time to save dataset: {time.time()-t_start:.2f}")
| 3,864 | 30.422764 | 100 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/arguments.py | from dataclasses import dataclass, field
from typing import Optional
@dataclass
class TrainingArguments:
"""
Configuration for training model.
"""
model_ckpt: Optional[str] = field(
default="lvwerra/codeparrot",
metadata={"help": "Model name or path of model to be trained."},
)
save_dir: Optional[str] = field(
default="./",
metadata={"help": "Save dir where model repo is cloned and models updates are saved to."},
)
dataset_name_train: Optional[str] = field(
default="lvwerra/codeparrot-clean-train", metadata={"help": "Name or path of training dataset."}
)
dataset_name_valid: Optional[str] = field(
default="lvwerra/codeparrot-clean-valid", metadata={"help": "Name or path of validation dataset."}
)
train_batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size for training."})
valid_batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size for evaluation."})
weight_decay: Optional[float] = field(default=0.1, metadata={"help": "Value of weight decay."})
shuffle_buffer: Optional[int] = field(
default=1000, metadata={"help": "Size of buffer used to shuffle streaming dataset."}
)
learning_rate: Optional[float] = field(default=2e-4, metadata={"help": "Learning rate fo training."})
lr_scheduler_type: Optional[str] = field(default="cosine", metadata={"help": "Learning rate."})
num_warmup_steps: Optional[int] = field(
default=750, metadata={"help": "Number of warmup steps in the learning rate schedule."}
)
gradient_accumulation_steps: Optional[int] = field(
default=16, metadata={"help": "Number of gradient accumulation steps."}
)
gradient_checkpointing: Optional[bool] = field(
default=True, metadata={"help": "Use gradient checkpointing to reduce memory footprint."}
)
max_train_steps: Optional[int] = field(default=50_000, metadata={"help": "Maximum number of training steps."})
max_eval_steps: Optional[int] = field(
default=-1, metadata={"help": "Maximum number of evaluation steps. If -1 the full dataset is evaluated."}
)
seq_length: Optional[int] = field(default=1024, metadata={"help": "Sequence lengths used for training."})
seed: Optional[int] = field(default=1, metadata={"help": "Training seed."})
save_checkpoint_steps: Optional[int] = field(
default=1024,
metadata={"help": "Interval to save checkpoints. Measured as number of forward passes not training steps."},
)
@dataclass
class EvaluationArguments:
"""
Configuration for evaluating model.
"""
model_ckpt: Optional[str] = field(
default="lvwerra/codeparrot",
metadata={"help": "Model name or path of model to be evaluated."},
)
dataset_name: Optional[str] = field(
default="lvwerra/codeparrot-clean-valid", metadata={"help": "Name or path of validation dataset."}
)
batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size used for evaluation."})
max_eval_steps: Optional[int] = field(
default=-1, metadata={"help": "Maximum number of evaluation steps. If -1 the full dataset is evaluated."}
)
seq_length: Optional[int] = field(default=1024, metadata={"help": "Length of sequences to be evaluated."})
seed: Optional[int] = field(default=1, metadata={"help": "Random seed used for evaluation."})
@dataclass
class HumanEvalArguments:
"""
Configuration for running evaluation on HumanEval dataset.
"""
model_ckpt: Optional[str] = field(
default="lvwerra/codeparrot",
metadata={"help": "Model name or path of model to be evaluated."},
)
num_workers: Optional[int] = field(default=None, metadata={"help": "Number of workers used for code evaluation."})
num_tasks: Optional[int] = field(
default=None,
metadata={"help": "The number of human-eval tasks to run. If not included all tasks are evaluated."},
)
do_sample: Optional[bool] = field(
default=True, metadata={"help": "Sample from the language model's output distribution."}
)
temperature: Optional[float] = field(default=0.2, metadata={"help": "Sampling temperature used for generation."})
max_new_tokens: Optional[int] = field(default=256, metadata={"help": "Maximum number of newly generated tokens."})
top_k: Optional[int] = field(default=0, metadata={"help": "Top-k parameter used for generation."})
top_p: Optional[float] = field(default=0.95, metadata={"help": "Top-p parameter used for nucleus sampling."})
batch_size: Optional[int] = field(default=10, metadata={"help": "Number of generations to run in parallel."})
n_samples: Optional[int] = field(
default=200, metadata={"help": "Number of completions to generate for each sample."}
)
seed: Optional[int] = field(default=1, metadata={"help": "Random seed used for evaluation."})
output_file: Optional[str] = field(
default="eval_results.json", metadata={"help": "Random seed used for evaluation."}
)
HF_ALLOW_CODE_EVAL: Optional[str] = field(
default="0", metadata={"help": "Allow `code_eval` to execute Python code on machine"}
)
device_int: Optional[int] = field(
default=-1,
metadata={
"help": "Determine which device to run the `text-generation` Pipeline on. -1 is CPU and any zero or positive number corresponds to which GPU device id to run on."
},
)
@dataclass
class PreprocessingArguments:
"""
Configuration for preprocessing data.
"""
num_workers: Optional[int] = field(
default=None,
metadata={
"help": "The number of CPU cores to use for parallel preprocessing. Default uses the maximum available."
},
)
dataset_name: Optional[str] = field(
default="codeparrot", metadata={"help": "Folder or name of dataset to process."}
)
output_dir: Optional[str] = field(
default="codeparrot-clean", metadata={"help": "Folder to save processed processed dataset."}
)
samples_per_file: Optional[int] = field(
default=100_000, metadata={"help": "Number of files to save per JSON output file."}
)
text_column: Optional[str] = field(default="content", metadata={"help": "Column containing text data to process."})
line_max: Optional[float] = field(
default=1000, metadata={"help": "Maximum line length in file, otherwise file is filtered."}
)
line_mean: Optional[float] = field(
default=100, metadata={"help": "Maximum mean line length in file, otherwise file is filtered."}
)
alpha_frac: Optional[float] = field(
default=0.25, metadata={"help": "Maximum fraction of non-alphanumeric characters, otherwise file is filtered."}
)
@dataclass
class TokenizerTrainingArguments:
"""
Configuration for tokenizer training.
"""
base_tokenizer: Optional[str] = field(
default="gpt2",
metadata={"help": "Base tokenizer to build new tokenizer from."},
)
dataset_name: Optional[str] = field(
default="transformersbook/codeparrot-train", metadata={"help": "Dataset to train tokenizer on."}
)
text_column: Optional[str] = field(default="content", metadata={"help": "Column containing text data to process."})
vocab_size: Optional[int] = field(default=200000, metadata={"help": "Number of examples to train tokenizer on."})
n_examples: Optional[int] = field(
default=32768, metadata={"help": "Number of examples to train the tokenizer on."}
)
tokenizer_name: Optional[str] = field(default="codeparrot", metadata={"help": "Name of new tokenizer."})
push_to_hub: Optional[bool] = field(default=True, metadata={"help": "Push saved tokenizer to the hub."})
@dataclass
class InitializationArguments:
"""
Configuration for initializing new model.
"""
config_name: Optional[str] = field(
default="gpt2-large",
metadata={"help": "Configuration to use for model initialization."},
)
tokenizer_name: Optional[str] = field(
default="lvwerra/codeparrot", metadata={"help": "Tokenizer attached to model."}
)
model_name: Optional[str] = field(default="codeparrot", metadata={"help": "Name of the created model."})
push_to_hub: Optional[bool] = field(default=True, metadata={"help": "Push saved tokenizer to the hub."})
| 8,452 | 44.446237 | 174 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/codeparrot_training.py | import logging
from argparse import Namespace
from pathlib import Path
import datasets
import torch
from datasets import load_dataset
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from torch.utils.tensorboard import SummaryWriter
import transformers
import wandb
from accelerate import Accelerator
from arguments import TrainingArguments
from huggingface_hub import Repository
from transformers import AdamW, AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, get_scheduler, set_seed
class ConstantLengthDataset(IterableDataset):
"""
Iterable dataset that returns constant length chunks of tokens from stream of text files.
Args:
tokenizer (Tokenizer): The processor used for proccessing the data.
dataset (dataset.Dataset): Dataset with text files.
infinite (bool): If True the iterator is reset after dataset reaches end else stops.
seq_length (int): Length of token sequences to return.
num_of_sequences: Number of token sequences to keep in buffer.
chars_per_token: Number of characters per token used to estimate number of tokens in text buffer.
"""
def __init__(
self, tokenizer, dataset, infinite=False, seq_length=1024, num_of_sequences=1024, chars_per_token=3.6
):
self.tokenizer = tokenizer
self.concat_token_id = tokenizer.bos_token_id
self.dataset = dataset
self.seq_length = seq_length
self.input_characters = seq_length * chars_per_token * num_of_sequences
self.epoch = 0
self.infinite = infinite
def __iter__(self):
iterator = iter(self.dataset)
more_examples = True
while more_examples:
buffer, buffer_len = [], 0
while True:
if buffer_len >= self.input_characters:
break
try:
buffer.append(next(iterator)["content"])
buffer_len += len(buffer[-1])
except StopIteration:
if self.infinite:
iterator = iter(self.dataset)
self.epoch += 1
logger.info(f"Dataset epoch: {self.epoch}")
else:
more_examples = False
break
tokenized_inputs = self.tokenizer(buffer, truncation=False)["input_ids"]
all_token_ids = []
for tokenized_input in tokenized_inputs:
all_token_ids.extend(tokenized_input + [self.concat_token_id])
for i in range(0, len(all_token_ids), self.seq_length):
input_ids = all_token_ids[i : i + self.seq_length]
if len(input_ids) == self.seq_length:
yield torch.tensor(input_ids)
def setup_logging(args):
project_name = args.model_ckpt.split("/")[-1]
logger = logging.getLogger(__name__)
log_dir = Path(args.save_dir) / "log/"
log_dir.mkdir(exist_ok=True)
filename = f"debug_{accelerator.process_index}.log"
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
handlers=[logging.FileHandler(log_dir / filename), logging.StreamHandler()],
)
if accelerator.is_main_process: # we only want to setup logging once
wandb.init(project=project_name, config=args)
run_name = wandb.run.name
tb_writer = SummaryWriter()
tb_writer.add_hparams(vars(args), {"0": 0})
logger.setLevel(logging.INFO)
datasets.utils.logging.set_verbosity_info()
transformers.utils.logging.set_verbosity_info()
else:
tb_writer = None
run_name = ""
logger.setLevel(logging.ERROR)
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
return logger, tb_writer, run_name
def create_dataloaders(args):
ds_kwargs = {"streaming": True}
train_data = load_dataset(args.dataset_name_train, split="train", **ds_kwargs)
train_data = train_data.shuffle(buffer_size=args.shuffle_buffer, seed=args.seed)
valid_data = load_dataset(args.dataset_name_valid, split="train", **ds_kwargs)
train_dataset = ConstantLengthDataset(tokenizer, train_data, infinite=True, seq_length=args.seq_length)
valid_dataset = ConstantLengthDataset(tokenizer, valid_data, infinite=False, seq_length=args.seq_length)
train_dataloader = DataLoader(train_dataset, batch_size=args.train_batch_size)
eval_dataloader = DataLoader(valid_dataset, batch_size=args.valid_batch_size)
return train_dataloader, eval_dataloader
def get_grouped_params(model, args, no_decay=["bias", "LayerNorm.weight"]):
params_with_wd, params_without_wd = [], []
for n, p in model.named_parameters():
if any(nd in n for nd in no_decay):
params_without_wd.append(p)
else:
params_with_wd.append(p)
return [
{"params": params_with_wd, "weight_decay": args.weight_decay},
{"params": params_without_wd, "weight_decay": 0.0},
]
def log_metrics(step, metrics):
logger.info(f"Step {step}: {metrics}")
if accelerator.is_main_process:
wandb.log(metrics)
[tb_writer.add_scalar(k, v, step) for k, v in metrics.items()]
def evaluate(args):
model.eval()
losses = []
for step, batch in enumerate(eval_dataloader):
with torch.no_grad():
outputs = model(batch, labels=batch)
loss = outputs.loss.repeat(args.valid_batch_size)
losses.append(accelerator.gather(loss))
if args.max_eval_steps > 0 and step >= args.max_eval_steps:
break
loss = torch.mean(torch.cat(losses))
try:
perplexity = torch.exp(loss)
except OverflowError:
perplexity = float("inf")
return loss.item(), perplexity.item()
# Accelerator
accelerator = Accelerator()
acc_state = {str(k): str(v) for k, v in accelerator.state.__dict__.items()}
# Settings
parser = HfArgumentParser(TrainingArguments)
args = parser.parse_args()
args = Namespace(**vars(args), **acc_state)
samples_per_step = accelerator.state.num_processes * args.train_batch_size
set_seed(args.seed)
# Clone model repository
if accelerator.is_main_process:
hf_repo = Repository(args.save_dir, clone_from=args.model_ckpt)
# Logging
logger, tb_writer, run_name = setup_logging(args)
logger.info(accelerator.state)
# Checkout new branch on repo
if accelerator.is_main_process:
hf_repo.git_checkout(run_name, create_branch_ok=True)
# Load model and tokenizer
model = AutoModelForCausalLM.from_pretrained(args.save_dir)
if args.gradient_checkpointing:
model.gradient_checkpointing_enable()
tokenizer = AutoTokenizer.from_pretrained(args.save_dir)
# Load dataset and dataloader
train_dataloader, eval_dataloader = create_dataloaders(args)
# Prepare the optimizer and learning rate scheduler
optimizer = AdamW(get_grouped_params(model, args), lr=args.learning_rate)
lr_scheduler = get_scheduler(
name=args.lr_scheduler_type,
optimizer=optimizer,
num_warmup_steps=args.num_warmup_steps,
num_training_steps=args.max_train_steps,
)
def get_lr():
return optimizer.param_groups[0]["lr"]
# Prepare everything with our `accelerator`.
model, optimizer, train_dataloader, eval_dataloader = accelerator.prepare(
model, optimizer, train_dataloader, eval_dataloader
)
# Train model
model.train()
completed_steps = 0
for step, batch in enumerate(train_dataloader, start=1):
loss = model(batch, labels=batch, use_cache=False).loss
log_metrics(
step, {"lr": get_lr(), "samples": step * samples_per_step, "steps": completed_steps, "loss/train": loss.item()}
)
loss = loss / args.gradient_accumulation_steps
accelerator.backward(loss)
if step % args.gradient_accumulation_steps == 0:
accelerator.clip_grad_norm_(model.parameters(), 1.0)
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
completed_steps += 1
if step % args.save_checkpoint_steps == 0:
logger.info("Evaluating and saving model checkpoint")
eval_loss, perplexity = evaluate(args)
log_metrics(step, {"loss/eval": eval_loss, "perplexity": perplexity})
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.save_dir, save_function=accelerator.save)
if accelerator.is_main_process:
hf_repo.push_to_hub(commit_message=f"step {step}")
model.train()
if completed_steps >= args.max_train_steps:
break
# Evaluate and save the last checkpoint
logger.info("Evaluating and saving model after training")
eval_loss, perplexity = evaluate(args)
log_metrics(step, {"loss/eval": eval_loss, "perplexity": perplexity})
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.save_dir, save_function=accelerator.save)
if accelerator.is_main_process:
hf_repo.push_to_hub(commit_message="final model")
| 9,194 | 37.153527 | 119 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/initialize_model.py | from arguments import InitializationArguments
from transformers import AutoConfig, AutoModelForCausalLM, AutoTokenizer, HfArgumentParser
# Configuration
parser = HfArgumentParser(InitializationArguments)
args = parser.parse_args()
# Load codeparrot tokenizer trained for Python code tokenization
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_name)
# Config: "scale_attn_by_layer_idx" and "reorder_and_upcast_attn" are Mistral stability tweaks
config_kwargs = {"vocab_size": len(tokenizer), "scale_attn_by_layer_idx": True, "reorder_and_upcast_attn": True}
# Load model config (GPT-2 large in this case)
config = AutoConfig.from_pretrained(args.config_name, **config_kwargs)
# Initialize new model with config
model = AutoModelForCausalLM(config)
# Save model to the hub
model.save_pretrained(args.model_name, push_to_hub=args.push_to_hub)
| 857 | 36.304348 | 112 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/validation_loss.py | import logging
import torch
from datasets import load_dataset
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from accelerate import Accelerator
from arguments import EvaluationArguments
from transformers import AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, set_seed
class ConstantLengthDataset(IterableDataset):
def __init__(self, tokenizer, dataset, seq_length=1024, num_of_sequences=1024, chars_per_token=3.6):
self.tokenizer = tokenizer
self.concat_token_id = tokenizer.bos_token_id
self.dataset = dataset
self.seq_length = seq_length
self.input_characters = seq_length * chars_per_token * num_of_sequences
def __iter__(self):
iterator = iter(self.dataset)
more_examples = True
while more_examples:
buffer, buffer_len = [], 0
while True:
if buffer_len >= self.input_characters:
break
try:
buffer.append(next(iterator)["content"])
buffer_len += len(buffer[-1])
except StopIteration:
more_examples = False
break
tokenized_inputs = tokenizer(buffer, truncation=False)["input_ids"]
all_token_ids = []
for tokenized_input in tokenized_inputs:
all_token_ids.extend(tokenized_input + [self.concat_token_id])
for i in range(0, len(all_token_ids), self.seq_length):
input_ids = all_token_ids[i : i + self.seq_length]
if len(input_ids) == self.seq_length:
yield torch.tensor(input_ids)
def create_dataloader(args):
ds_kwargs = {"streaming": True}
valid_data = load_dataset(args.dataset_name, split="train", **ds_kwargs)
valid_dataset = ConstantLengthDataset(tokenizer, valid_data, seq_length=args.seq_length)
eval_dataloader = DataLoader(valid_dataset, batch_size=args.batch_size)
return eval_dataloader
def evaluate(args):
model.eval()
losses = []
for step, batch in enumerate(eval_dataloader):
with torch.no_grad():
outputs = model(batch, labels=batch)
loss = outputs.loss.repeat(args.batch_size)
losses.append(accelerator.gather(loss))
if args.max_eval_steps > 0 and step >= args.max_eval_steps:
break
loss = torch.mean(torch.cat(losses))
try:
perplexity = torch.exp(loss)
except OverflowError:
perplexity = float("inf")
return loss.item(), perplexity.item()
# Setup Accelerator
accelerator = Accelerator()
# Parse configuration
parser = HfArgumentParser(EvaluationArguments)
args = parser.parse_args()
set_seed(args.seed)
# Logging
logger = logging.getLogger(__name__)
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO
)
# Load model and tokenizer
model = AutoModelForCausalLM.from_pretrained(args.model_ckpt)
tokenizer = AutoTokenizer.from_pretrained(args.model_ckpt)
# Load dataset and dataloader
eval_dataloader = create_dataloader(args)
# Prepare everything with our `accelerator`.
model, eval_dataloader = accelerator.prepare(model, eval_dataloader)
# Evaluate and save the last checkpoint
logger.info("Evaluating and saving model after training")
eval_loss, perplexity = evaluate(args)
logger.info(f"loss/eval: {eval_loss}, perplexity: {perplexity}")
| 3,496 | 33.97 | 114 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/human_eval.py | import json
import multiprocessing
import os
import re
from datasets import load_dataset, load_metric
from tqdm import tqdm
import transformers
from arguments import HumanEvalArguments
from transformers import (
AutoModelForCausalLM,
AutoTokenizer,
HfArgumentParser,
StoppingCriteria,
StoppingCriteriaList,
pipeline,
set_seed,
)
EOF_STRINGS = ["\nclass", "\ndef", "\n#", "\n@", "\nprint", "\nif"]
class EndOfFunctionCriteria(StoppingCriteria):
"""Custom `StoppingCriteria` which checks if all generated functions in the batch are completed."""
def __init__(self, start_length, eof_strings, tokenizer):
self.start_length = start_length
self.eof_strings = eof_strings
self.tokenizer = tokenizer
def __call__(self, input_ids, scores, **kwargs):
"""Returns true if all generated sequences contain any of the end-of-function strings."""
decoded_generations = self.tokenizer.batch_decode(input_ids[:, self.start_length :])
done = []
for decoded_generation in decoded_generations:
done.append(any([stop_string in decoded_generation for stop_string in self.eof_strings]))
return all(done)
def first_block(string):
"""Split off first block of code by scanning for class, def etc. on newlines."""
return re.split("|".join(EOF_STRINGS), string)[0].rstrip()
def complete_code(pipe, prompt, num_completions=1, **gen_kwargs):
"""Complete prompt with text generation pipeline and return num_completions."""
prompt = pipe.tokenizer.eos_token + prompt
code_gens = pipe(prompt, num_return_sequences=num_completions, **gen_kwargs)
return [first_block(code_gen["generated_text"][len(prompt) :]) for code_gen in code_gens]
def main():
# Setup configuration
parser = HfArgumentParser(HumanEvalArguments)
args = parser.parse_args()
transformers.logging.set_verbosity_error()
# enables code execution in code_eval metric
os.environ["HF_ALLOW_CODE_EVAL"] = args.HF_ALLOW_CODE_EVAL
# make sure tokenizer plays nice with multiprocessing
os.environ["TOKENIZERS_PARALLELISM"] = "false"
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
set_seed(args.seed)
# Load model and tokenizer
tokenizer = AutoTokenizer.from_pretrained(args.model_ckpt)
model = AutoModelForCausalLM.from_pretrained(args.model_ckpt)
pipe = pipeline("text-generation", model=model, tokenizer=tokenizer, device=args.device_int)
# Generation settings
gen_kwargs = {
"do_sample": args.do_sample,
"temperature": args.temperature,
"max_new_tokens": args.max_new_tokens,
"top_p": args.top_p,
"top_k": args.top_k,
"stopping_criteria": StoppingCriteriaList([EndOfFunctionCriteria(0, EOF_STRINGS, tokenizer)]),
}
# Load evaluation dataset and metric
human_eval = load_dataset("openai_humaneval")
code_eval_metric = load_metric("code_eval")
# Run a quick test to see if code evaluation is enabled
try:
_ = code_eval_metric.compute(references=[""], predictions=[[""]])
except ValueError as exception:
print(
'Code evaluation not enabled. Read the warning below carefully and then use `--HF_ALLOW_CODE_EVAL="1"` flag to enable code evaluation.'
)
raise exception
# Generate completions for evaluation set
n_tasks = args.num_tasks if args.num_tasks is not None else len(human_eval["test"])
generations, references = [], []
for task in tqdm(range(n_tasks)):
task_generations = []
prompt = human_eval["test"][task]["prompt"].strip()
gen_kwargs["stopping_criteria"][0].start_length = len(tokenizer(prompt)["input_ids"])
for batch in range(args.n_samples // args.batch_size):
task_generations.extend(complete_code(pipe, prompt, num_completions=args.batch_size, **gen_kwargs))
generations.append([prompt + gen for gen in task_generations])
test_func = human_eval["test"][task]["test"]
entry_point = f"check({human_eval['test'][task]['entry_point']})"
references.append("\n" + test_func + "\n" + entry_point)
# Evaluate completions with "code_eval" metric
pass_at_k, _ = code_eval_metric.compute(
references=references, predictions=generations, num_workers=args.num_workers
)
print(f"Results: {pass_at_k}")
# Save results to json file
with open(args.output_file, "w") as fp:
json.dump(pass_at_k, fp)
# For some reason the folliwng seems to be necessary sometimes for code_eval to work nice with multiprocessing
# https://stackoverflow.com/questions/60804599/python-multiprocessing-keeps-spawning-the-whole-script
if __name__ == "__main__":
main()
| 4,789 | 36.716535 | 147 | py |
robust-transformers | robust-transformers-main/examples/research_projects/codeparrot/scripts/bpe_training.py | from datasets import load_dataset
from tqdm import tqdm
from arguments import TokenizerTrainingArguments
from transformers import AutoTokenizer, HfArgumentParser
from transformers.models.gpt2.tokenization_gpt2 import bytes_to_unicode
# Iterator for Training
def batch_iterator(batch_size=10):
for _ in tqdm(range(0, args.n_examples, batch_size)):
yield [next(iter_dataset)[args.text_column] for _ in range(batch_size)]
# Configuration
parser = HfArgumentParser(TokenizerTrainingArguments)
args = parser.parse_args()
# Base tokenizer
tokenizer = AutoTokenizer.from_pretrained(args.base_tokenizer)
base_vocab = list(bytes_to_unicode().values())
# Load dataset
dataset = load_dataset(args.dataset_name, split="train", streaming=True)
iter_dataset = iter(dataset)
# Training and saving
new_tokenizer = tokenizer.train_new_from_iterator(
batch_iterator(), vocab_size=args.vocab_size, initial_alphabet=base_vocab
)
new_tokenizer.save_pretrained(args.tokenizer_name, push_to_hub=args.push_to_hub)
| 1,015 | 29.787879 | 80 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertology/run_prune_gpt.py | #!/usr/bin/env python3
""" This script is adapted from the Bertology pruning code (https://github.com/huggingface/transformers/blob/783d7d2629e97c5f0c5f9ef01b8c66410275c204/examples/research_projects/bertology/run_bertology.py)
to prune GPT-like models. The author is @altsoph.
"""
import argparse
import logging
import os
from datetime import datetime
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, TensorDataset
from tqdm import tqdm
from transformers import GPT2LMHeadModel
logger = logging.getLogger(__name__)
def save_model(model, dirpath):
# save results
if os.path.exists(dirpath):
if os.path.exists(os.path.join(dirpath, "config.json")) and os.path.isfile(
os.path.join(dirpath, "config.json")
):
os.remove(os.path.join(dirpath, "config.json"))
if os.path.exists(os.path.join(dirpath, "pytorch_model.bin")) and os.path.isfile(
os.path.join(dirpath, "pytorch_model.bin")
):
os.remove(os.path.join(dirpath, "pytorch_model.bin"))
else:
os.makedirs(dirpath)
model.save_pretrained(dirpath)
def entropy(p, unlogit=False):
"""Compute the entropy of a probability distribution"""
exponent = 2
if unlogit:
p = torch.pow(p, exponent)
plogp = p * torch.log(p)
plogp[p == 0] = 0
return -plogp.sum(dim=-1)
def print_2d_tensor(tensor):
"""Print a 2D tensor"""
logger.info("lv, h >\t" + "\t".join(f"{x + 1}" for x in range(len(tensor))))
for row in range(len(tensor)):
if tensor.dtype != torch.long:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:.5f}" for x in tensor[row].cpu().data))
else:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:d}" for x in tensor[row].cpu().data))
def compute_heads_importance(
args, model, eval_dataloader, compute_entropy=True, compute_importance=True, head_mask=None, actually_pruned=False
):
"""This method shows how to compute:
- head attention entropy
- head importance scores according to http://arxiv.org/abs/1905.10650
"""
# Prepare our tensors
n_layers, n_heads = model.config.num_hidden_layers, model.config.num_attention_heads
head_importance = torch.zeros(n_layers, n_heads).to(args.device)
attn_entropy = torch.zeros(n_layers, n_heads).to(args.device)
if head_mask is None:
head_mask = torch.ones(n_layers, n_heads).to(args.device)
head_mask.requires_grad_(requires_grad=True)
# If actually pruned attention multi-head, set head mask to None to avoid shape mismatch
if actually_pruned:
head_mask = None
tot_tokens = 0.0
total_loss = 0.0
for step, inputs in enumerate(tqdm(eval_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])):
inputs = tuple(t.to(args.device) for t in inputs)
(input_ids,) = inputs
# Do a forward pass (not with torch.no_grad() since we need gradients for importance score - see below)
outputs = model(input_ids, labels=input_ids, head_mask=head_mask)
# (loss), lm_logits, presents, (all hidden_states), (attentions)
loss, _, all_attentions = (
outputs[0],
outputs[1],
outputs[-1],
) # Loss and logits are the first, attention the last
loss.backward() # Backpropagate to populate the gradients in the head mask
total_loss += loss.detach().cpu().numpy()
if compute_entropy:
for layer, attn in enumerate(all_attentions):
masked_entropy = entropy(attn.detach(), True)
attn_entropy[layer] += masked_entropy.sum(-1).sum(0).sum(0).detach()
if compute_importance:
head_importance += head_mask.grad.abs().detach()
tot_tokens += torch.ones_like(input_ids).float().detach().sum().data
# Normalize
attn_entropy /= tot_tokens
head_importance /= tot_tokens
# Layerwise importance normalization
if not args.dont_normalize_importance_by_layer:
exponent = 2
norm_by_layer = torch.pow(torch.pow(head_importance, exponent).sum(-1), 1 / exponent)
head_importance /= norm_by_layer.unsqueeze(-1) + 1e-20
if not args.dont_normalize_global_importance:
head_importance = (head_importance - head_importance.min()) / (head_importance.max() - head_importance.min())
# Print matrices
if compute_entropy:
logger.info("Attention entropies")
print_2d_tensor(attn_entropy)
if compute_importance:
logger.info("Head importance scores")
print_2d_tensor(head_importance)
logger.info("Head ranked by importance scores")
head_ranks = torch.zeros(head_importance.numel(), dtype=torch.long, device=args.device)
head_ranks[head_importance.view(-1).sort(descending=True)[1]] = torch.arange(
head_importance.numel(), device=args.device
)
head_ranks = head_ranks.view_as(head_importance)
print_2d_tensor(head_ranks)
return attn_entropy, head_importance, total_loss
def mask_heads(args, model, eval_dataloader):
"""This method shows how to mask head (set some heads to zero), to test the effect on the network,
based on the head importance scores, as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
_, head_importance, loss = compute_heads_importance(args, model, eval_dataloader, compute_entropy=False)
original_score = 1 / loss # instead of downsteam score use the LM loss
logger.info("Pruning: original score: %f, threshold: %f", original_score, original_score * args.masking_threshold)
new_head_mask = torch.ones_like(head_importance)
num_to_mask = max(1, int(new_head_mask.numel() * args.masking_amount))
current_score = original_score
while current_score >= original_score * args.masking_threshold:
head_mask = new_head_mask.clone().detach() # save current head mask
# heads from least important to most - keep only not-masked heads
head_importance[head_mask == 0.0] = float("Inf")
current_heads_to_mask = head_importance.view(-1).sort()[1]
if len(current_heads_to_mask) <= num_to_mask:
print("BREAK BY num_to_mask")
break
# mask heads
current_heads_to_mask = current_heads_to_mask[:num_to_mask]
logger.info("Heads to mask: %s", str(current_heads_to_mask.tolist()))
new_head_mask = new_head_mask.view(-1)
new_head_mask[current_heads_to_mask] = 0.0
new_head_mask = new_head_mask.view_as(head_mask)
new_head_mask = new_head_mask.clone().detach()
print_2d_tensor(new_head_mask)
# Compute metric and head importance again
_, head_importance, loss = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, head_mask=new_head_mask
)
current_score = 1 / loss
logger.info(
"Masking: current score: %f, remaining heads %d (%.1f percents)",
current_score,
new_head_mask.sum(),
new_head_mask.sum() / new_head_mask.numel() * 100,
)
logger.info("Final head mask")
print_2d_tensor(head_mask)
np.save(os.path.join(args.output_dir, "head_mask.npy"), head_mask.detach().cpu().numpy())
return head_mask
def prune_heads(args, model, eval_dataloader, head_mask):
"""This method shows how to prune head (remove heads weights) based on
the head importance scores as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
# Try pruning and test time speedup
# Pruning is like masking but we actually remove the masked weights
before_time = datetime.now()
_, _, loss = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, compute_importance=False, head_mask=head_mask
)
score_masking = 1 / loss
original_time = datetime.now() - before_time
original_num_params = sum(p.numel() for p in model.parameters())
heads_to_prune = dict(
(layer, (1 - head_mask[layer].long()).nonzero().squeeze().tolist()) for layer in range(len(head_mask))
)
for k, v in heads_to_prune.items():
if isinstance(v, int):
heads_to_prune[k] = [
v,
]
assert sum(len(h) for h in heads_to_prune.values()) == (1 - head_mask.long()).sum().item()
model.prune_heads(heads_to_prune)
pruned_num_params = sum(p.numel() for p in model.parameters())
before_time = datetime.now()
_, _, loss = compute_heads_importance(
args,
model,
eval_dataloader,
compute_entropy=False,
compute_importance=False,
head_mask=None,
actually_pruned=True,
)
score_pruning = 1 / loss
new_time = datetime.now() - before_time
logger.info(
"Pruning: original num of params: %.2e, after pruning %.2e (%.1f percents)",
original_num_params,
pruned_num_params,
pruned_num_params / original_num_params * 100,
)
logger.info("Pruning: score with masking: %f score with pruning: %f", score_masking, score_pruning)
logger.info("Pruning: speed ratio (original timing / new timing): %f percents", original_time / new_time * 100)
save_model(model, args.output_dir)
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from s3",
)
parser.add_argument(
"--data_subset", type=int, default=-1, help="If > 0: limit the data to a subset of data_subset instances."
)
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Whether to overwrite data in output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument(
"--dont_normalize_importance_by_layer", action="store_true", help="Don't normalize importance score by layers"
)
parser.add_argument(
"--dont_normalize_global_importance",
action="store_true",
help="Don't normalize all importance scores between 0 and 1",
)
parser.add_argument(
"--try_masking", action="store_true", help="Whether to try to mask head until a threshold of accuracy."
)
parser.add_argument(
"--masking_threshold",
default=0.9,
type=float,
help="masking threshold in term of metrics (stop masking when metric < threshold * original metric value).",
)
parser.add_argument(
"--masking_amount", default=0.1, type=float, help="Amount to heads to masking at each masking step."
)
parser.add_argument("--metric_name", default="acc", type=str, help="Metric to use for head masking.")
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help="The maximum total input sequence length after WordPiece tokenization. \n"
"Sequences longer than this will be truncated, sequences shorter padded.",
)
parser.add_argument("--batch_size", default=1, type=int, help="Batch size.")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup devices and distributed training
if args.local_rank == -1 or args.no_cuda:
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else:
torch.cuda.set_device(args.local_rank)
args.device = torch.device("cuda", args.local_rank)
args.n_gpu = 1
torch.distributed.init_process_group(backend="nccl") # Initializes the distributed backend
# Setup logging
logging.basicConfig(level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN)
logger.info("device: {} n_gpu: {}, distributed: {}".format(args.device, args.n_gpu, bool(args.local_rank != -1)))
model = GPT2LMHeadModel.from_pretrained(args.model_name_or_path)
# Distributed and parallel training
model.to(args.device)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
elif args.n_gpu > 1:
model = nn.DataParallel(model)
# Print/save training arguments
os.makedirs(args.output_dir, exist_ok=True)
torch.save(args, os.path.join(args.output_dir, "run_args.bin"))
logger.info("Training/evaluation parameters %s", args)
# Prepare dataset
numpy_data = np.concatenate(
[
np.loadtxt(args.data_dir, dtype=np.int64),
]
)
train_tensor_dataset = (torch.from_numpy(numpy_data),)
train_data = TensorDataset(*train_tensor_dataset)
train_sampler = RandomSampler(train_data)
eval_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.batch_size)
# Compute head entropy and importance score
compute_heads_importance(args, model, eval_dataloader)
# Try head masking (set heads to zero until the score goes under a threshole)
# and head pruning (remove masked heads and see the effect on the network)
if args.try_masking and args.masking_threshold > 0.0 and args.masking_threshold < 1.0:
head_mask = mask_heads(args, model, eval_dataloader)
prune_heads(args, model, eval_dataloader, head_mask)
if __name__ == "__main__":
main()
| 15,469 | 38.666667 | 204 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertology/run_bertology.py | #!/usr/bin/env python3
# Copyright 2018 CMU and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Bertology: this script shows how you can explore the internals of the models in the library to:
- compute the entropy of the head attentions
- compute the importance of each head
- prune (remove) the low importance head.
Some parts of this script are adapted from the code of Michel et al. (http://arxiv.org/abs/1905.10650)
which is available at https://github.com/pmichel31415/are-16-heads-really-better-than-1
"""
import argparse
import logging
import os
from datetime import datetime
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, SequentialSampler, Subset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm
import transformers
from transformers import (
AutoConfig,
AutoModelForSequenceClassification,
AutoTokenizer,
GlueDataset,
default_data_collator,
glue_compute_metrics,
glue_output_modes,
glue_processors,
set_seed,
)
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
def entropy(p):
"""Compute the entropy of a probability distribution"""
plogp = p * torch.log(p)
plogp[p == 0] = 0
return -plogp.sum(dim=-1)
def print_2d_tensor(tensor):
"""Print a 2D tensor"""
logger.info("lv, h >\t" + "\t".join(f"{x + 1}" for x in range(len(tensor))))
for row in range(len(tensor)):
if tensor.dtype != torch.long:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:.5f}" for x in tensor[row].cpu().data))
else:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:d}" for x in tensor[row].cpu().data))
def compute_heads_importance(
args, model, eval_dataloader, compute_entropy=True, compute_importance=True, head_mask=None, actually_pruned=False
):
"""This method shows how to compute:
- head attention entropy
- head importance scores according to http://arxiv.org/abs/1905.10650
"""
# Prepare our tensors
n_layers, n_heads = model.config.num_hidden_layers, model.config.num_attention_heads
head_importance = torch.zeros(n_layers, n_heads).to(args.device)
attn_entropy = torch.zeros(n_layers, n_heads).to(args.device)
if head_mask is None:
head_mask = torch.ones(n_layers, n_heads).to(args.device)
head_mask.requires_grad_(requires_grad=True)
# If actually pruned attention multi-head, set head mask to None to avoid shape mismatch
if actually_pruned:
head_mask = None
preds = None
labels = None
tot_tokens = 0.0
for step, inputs in enumerate(tqdm(eval_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])):
for k, v in inputs.items():
inputs[k] = v.to(args.device)
# Do a forward pass (not with torch.no_grad() since we need gradients for importance score - see below)
outputs = model(**inputs, head_mask=head_mask)
loss, logits, all_attentions = (
outputs[0],
outputs[1],
outputs[-1],
) # Loss and logits are the first, attention the last
loss.backward() # Backpropagate to populate the gradients in the head mask
if compute_entropy:
for layer, attn in enumerate(all_attentions):
masked_entropy = entropy(attn.detach()) * inputs["attention_mask"].float().unsqueeze(1)
attn_entropy[layer] += masked_entropy.sum(-1).sum(0).detach()
if compute_importance:
head_importance += head_mask.grad.abs().detach()
# Also store our logits/labels if we want to compute metrics afterwards
if preds is None:
preds = logits.detach().cpu().numpy()
labels = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
labels = np.append(labels, inputs["labels"].detach().cpu().numpy(), axis=0)
tot_tokens += inputs["attention_mask"].float().detach().sum().data
# Normalize
attn_entropy /= tot_tokens
head_importance /= tot_tokens
# Layerwise importance normalization
if not args.dont_normalize_importance_by_layer:
exponent = 2
norm_by_layer = torch.pow(torch.pow(head_importance, exponent).sum(-1), 1 / exponent)
head_importance /= norm_by_layer.unsqueeze(-1) + 1e-20
if not args.dont_normalize_global_importance:
head_importance = (head_importance - head_importance.min()) / (head_importance.max() - head_importance.min())
# Print/save matrices
np.save(os.path.join(args.output_dir, "attn_entropy.npy"), attn_entropy.detach().cpu().numpy())
np.save(os.path.join(args.output_dir, "head_importance.npy"), head_importance.detach().cpu().numpy())
logger.info("Attention entropies")
print_2d_tensor(attn_entropy)
logger.info("Head importance scores")
print_2d_tensor(head_importance)
logger.info("Head ranked by importance scores")
head_ranks = torch.zeros(head_importance.numel(), dtype=torch.long, device=args.device)
head_ranks[head_importance.view(-1).sort(descending=True)[1]] = torch.arange(
head_importance.numel(), device=args.device
)
head_ranks = head_ranks.view_as(head_importance)
print_2d_tensor(head_ranks)
return attn_entropy, head_importance, preds, labels
def mask_heads(args, model, eval_dataloader):
"""This method shows how to mask head (set some heads to zero), to test the effect on the network,
based on the head importance scores, as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
_, head_importance, preds, labels = compute_heads_importance(args, model, eval_dataloader, compute_entropy=False)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
original_score = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
logger.info("Pruning: original score: %f, threshold: %f", original_score, original_score * args.masking_threshold)
new_head_mask = torch.ones_like(head_importance)
num_to_mask = max(1, int(new_head_mask.numel() * args.masking_amount))
current_score = original_score
while current_score >= original_score * args.masking_threshold:
head_mask = new_head_mask.clone() # save current head mask
# heads from least important to most - keep only not-masked heads
head_importance[head_mask == 0.0] = float("Inf")
current_heads_to_mask = head_importance.view(-1).sort()[1]
if len(current_heads_to_mask) <= num_to_mask:
break
# mask heads
current_heads_to_mask = current_heads_to_mask[:num_to_mask]
logger.info("Heads to mask: %s", str(current_heads_to_mask.tolist()))
new_head_mask = new_head_mask.view(-1)
new_head_mask[current_heads_to_mask] = 0.0
new_head_mask = new_head_mask.view_as(head_mask)
new_head_mask = new_head_mask.clone().detach()
print_2d_tensor(new_head_mask)
# Compute metric and head importance again
_, head_importance, preds, labels = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, head_mask=new_head_mask
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
current_score = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
logger.info(
"Masking: current score: %f, remaining heads %d (%.1f percents)",
current_score,
new_head_mask.sum(),
new_head_mask.sum() / new_head_mask.numel() * 100,
)
logger.info("Final head mask")
print_2d_tensor(head_mask)
np.save(os.path.join(args.output_dir, "head_mask.npy"), head_mask.detach().cpu().numpy())
return head_mask
def prune_heads(args, model, eval_dataloader, head_mask):
"""This method shows how to prune head (remove heads weights) based on
the head importance scores as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
# Try pruning and test time speedup
# Pruning is like masking but we actually remove the masked weights
before_time = datetime.now()
_, _, preds, labels = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, compute_importance=False, head_mask=head_mask
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
score_masking = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
original_time = datetime.now() - before_time
original_num_params = sum(p.numel() for p in model.parameters())
heads_to_prune = dict(
(layer, (1 - head_mask[layer].long()).nonzero().squeeze().tolist()) for layer in range(len(head_mask))
)
assert sum(len(h) for h in heads_to_prune.values()) == (1 - head_mask.long()).sum().item()
model.prune_heads(heads_to_prune)
pruned_num_params = sum(p.numel() for p in model.parameters())
before_time = datetime.now()
_, _, preds, labels = compute_heads_importance(
args,
model,
eval_dataloader,
compute_entropy=False,
compute_importance=False,
head_mask=None,
actually_pruned=True,
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
score_pruning = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
new_time = datetime.now() - before_time
logger.info(
"Pruning: original num of params: %.2e, after pruning %.2e (%.1f percents)",
original_num_params,
pruned_num_params,
pruned_num_params / original_num_params * 100,
)
logger.info("Pruning: score with masking: %f score with pruning: %f", score_masking, score_pruning)
logger.info("Pruning: speed ratio (new timing / original timing): %f percents", original_time / new_time * 100)
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(glue_processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--data_subset", type=int, default=-1, help="If > 0: limit the data to a subset of data_subset instances."
)
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Whether to overwrite data in output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument(
"--dont_normalize_importance_by_layer", action="store_true", help="Don't normalize importance score by layers"
)
parser.add_argument(
"--dont_normalize_global_importance",
action="store_true",
help="Don't normalize all importance scores between 0 and 1",
)
parser.add_argument(
"--try_masking", action="store_true", help="Whether to try to mask head until a threshold of accuracy."
)
parser.add_argument(
"--masking_threshold",
default=0.9,
type=float,
help="masking threshold in term of metrics (stop masking when metric < threshold * original metric value).",
)
parser.add_argument(
"--masking_amount", default=0.1, type=float, help="Amount to heads to masking at each masking step."
)
parser.add_argument("--metric_name", default="acc", type=str, help="Metric to use for head masking.")
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help="The maximum total input sequence length after WordPiece tokenization. \n"
"Sequences longer than this will be truncated, sequences shorter padded.",
)
parser.add_argument("--batch_size", default=1, type=int, help="Batch size.")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup devices and distributed training
if args.local_rank == -1 or args.no_cuda:
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else:
torch.cuda.set_device(args.local_rank)
args.device = torch.device("cuda", args.local_rank)
args.n_gpu = 1
torch.distributed.init_process_group(backend="nccl") # Initializes the distributed backend
# Setup logging
logging.basicConfig(level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN)
logger.info("device: {} n_gpu: {}, distributed: {}".format(args.device, args.n_gpu, bool(args.local_rank != -1)))
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seeds
set_seed(args.seed)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in glue_processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = glue_processors[args.task_name]()
args.output_mode = glue_output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
output_attentions=True,
cache_dir=args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
cache_dir=args.cache_dir,
)
model = AutoModelForSequenceClassification.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir,
)
# Distributed and parallel training
model.to(args.device)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
elif args.n_gpu > 1:
model = nn.DataParallel(model)
# Print/save training arguments
os.makedirs(args.output_dir, exist_ok=True)
torch.save(args, os.path.join(args.output_dir, "run_args.bin"))
logger.info("Training/evaluation parameters %s", args)
# Prepare dataset for the GLUE task
eval_dataset = GlueDataset(args, tokenizer=tokenizer, mode="dev")
if args.data_subset > 0:
eval_dataset = Subset(eval_dataset, list(range(min(args.data_subset, len(eval_dataset)))))
eval_sampler = SequentialSampler(eval_dataset) if args.local_rank == -1 else DistributedSampler(eval_dataset)
eval_dataloader = DataLoader(
eval_dataset, sampler=eval_sampler, batch_size=args.batch_size, collate_fn=default_data_collator
)
# Compute head entropy and importance score
compute_heads_importance(args, model, eval_dataloader)
# Try head masking (set heads to zero until the score goes under a threshole)
# and head pruning (remove masked heads and see the effect on the network)
if args.try_masking and args.masking_threshold > 0.0 and args.masking_threshold < 1.0:
head_mask = mask_heads(args, model, eval_dataloader)
prune_heads(args, model, eval_dataloader, head_mask)
if __name__ == "__main__":
main()
| 18,572 | 40.181818 | 118 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/use_own_knowledge_dataset.py | import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import torch
from datasets import Features, Sequence, Value, load_dataset
import faiss
from transformers import (
DPRContextEncoder,
DPRContextEncoderTokenizerFast,
HfArgumentParser,
RagRetriever,
RagSequenceForGeneration,
RagTokenizer,
)
logger = logging.getLogger(__name__)
torch.set_grad_enabled(False)
device = "cuda" if torch.cuda.is_available() else "cpu"
def split_text(text: str, n=100, character=" ") -> List[str]:
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents: dict) -> dict:
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed(documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
def main(
rag_example_args: "RagExampleArguments",
processing_args: "ProcessingArguments",
index_hnsw_args: "IndexHnswArguments",
):
######################################
logger.info("Step 1 - Create the dataset")
######################################
# The dataset needed for RAG must have three columns:
# - title (string): title of the document
# - text (string): text of a passage of the document
# - embeddings (array of dimension d): DPR representation of the passage
# Let's say you have documents in tab-separated csv files with columns "title" and "text"
assert os.path.isfile(rag_example_args.csv_path), "Please provide a valid path to a csv file"
# You can load a Dataset object this way
dataset = load_dataset(
"csv", data_files=[rag_example_args.csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
# More info about loading csv files in the documentation: https://huggingface.co/docs/datasets/loading_datasets.html?highlight=csv#csv-files
# Then split the documents into passages of 100 words
dataset = dataset.map(split_documents, batched=True, num_proc=processing_args.num_proc)
# And compute the embeddings
ctx_encoder = DPRContextEncoder.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name).to(device=device)
ctx_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name)
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = dataset.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=ctx_tokenizer),
batched=True,
batch_size=processing_args.batch_size,
features=new_features,
)
# And finally save your dataset
passages_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset")
dataset.save_to_disk(passages_path)
# from datasets import load_from_disk
# dataset = load_from_disk(passages_path) # to reload the dataset
######################################
logger.info("Step 2 - Index the dataset")
######################################
# Let's use the Faiss implementation of HNSW for fast approximate nearest neighbor search
index = faiss.IndexHNSWFlat(index_hnsw_args.d, index_hnsw_args.m, faiss.METRIC_INNER_PRODUCT)
dataset.add_faiss_index("embeddings", custom_index=index)
# And save the index
index_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset_hnsw_index.faiss")
dataset.get_index("embeddings").save(index_path)
# dataset.load_faiss_index("embeddings", index_path) # to reload the index
######################################
logger.info("Step 3 - Load RAG")
######################################
# Easy way to load the model
retriever = RagRetriever.from_pretrained(
rag_example_args.rag_model_name, index_name="custom", indexed_dataset=dataset
)
model = RagSequenceForGeneration.from_pretrained(rag_example_args.rag_model_name, retriever=retriever)
tokenizer = RagTokenizer.from_pretrained(rag_example_args.rag_model_name)
# For distributed fine-tuning you'll need to provide the paths instead, as the dataset and the index are loaded separately.
# retriever = RagRetriever.from_pretrained(rag_model_name, index_name="custom", passages_path=passages_path, index_path=index_path)
######################################
logger.info("Step 4 - Have fun")
######################################
question = rag_example_args.question or "What does Moses' rod turn into ?"
input_ids = tokenizer.question_encoder(question, return_tensors="pt")["input_ids"]
generated = model.generate(input_ids)
generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)[0]
logger.info("Q: " + question)
logger.info("A: " + generated_string)
@dataclass
class RagExampleArguments:
csv_path: str = field(
default=str(Path(__file__).parent / "test_data" / "my_knowledge_dataset.csv"),
metadata={"help": "Path to a tab-separated csv file with columns 'title' and 'text'"},
)
question: Optional[str] = field(
default=None,
metadata={"help": "Question that is passed as input to RAG. Default is 'What does Moses' rod turn into ?'."},
)
rag_model_name: str = field(
default="facebook/rag-sequence-nq",
metadata={"help": "The RAG model to use. Either 'facebook/rag-sequence-nq' or 'facebook/rag-token-nq'"},
)
dpr_ctx_encoder_model_name: str = field(
default="facebook/dpr-ctx_encoder-multiset-base",
metadata={
"help": "The DPR context encoder model to use. Either 'facebook/dpr-ctx_encoder-single-nq-base' or 'facebook/dpr-ctx_encoder-multiset-base'"
},
)
output_dir: Optional[str] = field(
default=None,
metadata={"help": "Path to a directory where the dataset passages and the index will be saved"},
)
@dataclass
class ProcessingArguments:
num_proc: Optional[int] = field(
default=None,
metadata={
"help": "The number of processes to use to split the documents into passages. Default is single process."
},
)
batch_size: int = field(
default=16,
metadata={
"help": "The batch size to use when computing the passages embeddings using the DPR context encoder."
},
)
@dataclass
class IndexHnswArguments:
d: int = field(
default=768,
metadata={"help": "The dimension of the embeddings to pass to the HNSW Faiss index."},
)
m: int = field(
default=128,
metadata={
"help": "The number of bi-directional links created for every new element during the HNSW index construction."
},
)
if __name__ == "__main__":
logging.basicConfig(level=logging.WARNING)
logger.setLevel(logging.INFO)
parser = HfArgumentParser((RagExampleArguments, ProcessingArguments, IndexHnswArguments))
rag_example_args, processing_args, index_hnsw_args = parser.parse_args_into_dataclasses()
with TemporaryDirectory() as tmp_dir:
rag_example_args.output_dir = rag_example_args.output_dir or tmp_dir
main(rag_example_args, processing_args, index_hnsw_args)
| 8,174 | 38.878049 | 152 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/consolidate_rag_checkpoint.py | """
A script creating a RAG checkpoint from a generator and a question encoder checkpoints.
"""
import argparse
from pathlib import Path
from transformers import AutoConfig, AutoTokenizer, RagConfig, RagSequenceForGeneration, RagTokenForGeneration
def consolidate(
model_type,
generator_name_or_path: str,
question_encoder_name_or_path: str,
dest_dir: Path,
config_name_or_path: str = None,
generator_tokenizer_name_or_path: str = None,
question_encoder_tokenizer_name_or_path: str = None,
):
if config_name_or_path is None:
config_name_or_path = "facebook/rag-token-base" if model_type == "rag_token" else "facebook/rag-sequence-base"
if generator_tokenizer_name_or_path is None:
generator_tokenizer_name_or_path = generator_name_or_path
if question_encoder_tokenizer_name_or_path is None:
question_encoder_tokenizer_name_or_path = question_encoder_name_or_path
model_class = RagTokenForGeneration if model_type == "rag_token" else RagSequenceForGeneration
# Save model.
rag_config = RagConfig.from_pretrained(config_name_or_path)
gen_config = AutoConfig.from_pretrained(generator_name_or_path)
question_encoder_config = AutoConfig.from_pretrained(question_encoder_name_or_path)
rag_config.generator = gen_config
rag_config.question_encoder = question_encoder_config
rag_model = model_class.from_pretrained_question_encoder_generator(
question_encoder_name_or_path, generator_name_or_path, config=rag_config
)
rag_model.save_pretrained(dest_dir)
# Sanity check.
model_class.from_pretrained(dest_dir)
# Save tokenizers.
gen_tokenizer = AutoTokenizer.from_pretrained(generator_tokenizer_name_or_path)
gen_tokenizer.save_pretrained(dest_dir / "generator_tokenizer/")
question_encoder_tokenizer = AutoTokenizer.from_pretrained(question_encoder_tokenizer_name_or_path)
question_encoder_tokenizer.save_pretrained(dest_dir / "question_encoder_tokenizer/")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token"],
required=True,
type=str,
help="RAG model type: rag_sequence, rag_token",
)
parser.add_argument("--dest", type=str, required=True, help="Path to the output checkpoint directory.")
parser.add_argument("--generator_name_or_path", type=str, required=True, help="Generator model identifier")
parser.add_argument(
"--question_encoder_name_or_path", type=str, required=True, help="Question encoder model identifier"
)
parser.add_argument(
"--generator_tokenizer_name_or_path",
type=str,
help="Generator tokenizer identifier, if not specified, resolves to ``generator_name_or_path``",
)
parser.add_argument(
"--question_encoder_tokenizer_name_or_path",
type=str,
help="Question encoder tokenizer identifier, if not specified, resolves to ``question_encoder_name_or_path``",
)
parser.add_argument(
"--config_name_or_path",
type=str,
help="Identifier of the model config to use, if not provided, resolves to a base config for a given ``model_type``",
)
args = parser.parse_args()
dest_dir = Path(args.dest)
dest_dir.mkdir(exist_ok=True)
consolidate(
args.model_type,
args.generator_name_or_path,
args.question_encoder_name_or_path,
dest_dir,
args.config_name_or_path,
args.generator_tokenizer_name_or_path,
args.question_encoder_tokenizer_name_or_path,
)
| 3,640 | 35.41 | 124 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/utils_rag.py | import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transformers import BartTokenizer, RagTokenizer, T5Tokenizer
def encode_line(tokenizer, line, max_length, padding_side, pad_to_max_length=True, return_tensors="pt"):
extra_kw = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) and not line.startswith(" ") else {}
tokenizer.padding_side = padding_side
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
add_special_tokens=True,
**extra_kw,
)
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class Seq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
src_lang=None,
tgt_lang=None,
prefix="",
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.src_lens = self.get_char_lens(self.src_file)
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.src_lang = src_lang
self.tgt_lang = tgt_lang
def __len__(self):
return len(self.src_lens)
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
# Need to add eos token manually for T5
if isinstance(self.tokenizer, T5Tokenizer):
source_line += self.tokenizer.eos_token
tgt_line += self.tokenizer.eos_token
# Pad source and target to the right
source_tokenizer = (
self.tokenizer.question_encoder if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
)
target_tokenizer = self.tokenizer.generator if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
source_inputs = encode_line(source_tokenizer, source_line, self.max_source_length, "right")
target_inputs = encode_line(target_tokenizer, tgt_line, self.max_target_length, "right")
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"decoder_input_ids": target_ids,
}
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["decoder_input_ids"] for x in batch])
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
y = trim_batch(target_ids, tgt_pad_token_id)
source_ids, source_mask = trim_batch(input_ids, src_pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"decoder_input_ids": y,
}
return batch
logger = getLogger(__name__)
def flatten_list(summary_ids: List[List]):
return [x for x in itertools.chain.from_iterable(summary_ids)]
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def normalize_answer(s):
"""Lower text and remove punctuation, articles and extra whitespace."""
def remove_articles(text):
return re.sub(r"\b(a|an|the)\b", " ", text)
def white_space_fix(text):
return " ".join(text.split())
def remove_punc(text):
exclude = set(string.punctuation)
return "".join(ch for ch in text if ch not in exclude)
def lower(text):
return text.lower()
return white_space_fix(remove_articles(remove_punc(lower(s))))
def f1_score(prediction, ground_truth):
prediction_tokens = normalize_answer(prediction).split()
ground_truth_tokens = normalize_answer(ground_truth).split()
common = Counter(prediction_tokens) & Counter(ground_truth_tokens)
num_same = sum(common.values())
if num_same == 0:
return 0
precision = 1.0 * num_same / len(prediction_tokens)
recall = 1.0 * num_same / len(ground_truth_tokens)
f1 = (2 * precision * recall) / (precision + recall)
return f1
def exact_match_score(prediction, ground_truth):
return normalize_answer(prediction) == normalize_answer(ground_truth)
def calculate_exact_match(output_lns: List[str], reference_lns: List[str]) -> Dict:
assert len(output_lns) == len(reference_lns)
em = 0
for hypo, pred in zip(output_lns, reference_lns):
em += exact_match_score(hypo, pred)
if len(output_lns) > 0:
em /= len(output_lns)
return {"em": em}
def is_rag_model(model_prefix):
return model_prefix.startswith("rag")
def set_extra_model_params(extra_params, hparams, config):
equivalent_param = {p: p for p in extra_params}
# T5 models don't have `dropout` param, they have `dropout_rate` instead
equivalent_param["dropout"] = "dropout_rate"
for p in extra_params:
if getattr(hparams, p, None):
if not hasattr(config, p) and not hasattr(config, equivalent_param[p]):
logger.info("config doesn't have a `{}` attribute".format(p))
delattr(hparams, p)
continue
set_p = p if hasattr(config, p) else equivalent_param[p]
setattr(config, set_p, getattr(hparams, p))
delattr(hparams, p)
return hparams, config
| 8,114 | 32.122449 | 118 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/finetune_rag.py | """Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import logging
import os
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
import torch.distributed as dist
import torch.distributed as torch_distrib
from pytorch_lightning.plugins.training_type import DDPPlugin
from torch.utils.data import DataLoader
from transformers import (
AutoConfig,
AutoTokenizer,
BartForConditionalGeneration,
BatchEncoding,
RagConfig,
RagSequenceForGeneration,
RagTokenForGeneration,
RagTokenizer,
T5ForConditionalGeneration,
)
from transformers import logging as transformers_logging
from transformers.integrations import is_ray_available
if is_ray_available():
import ray
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever
from callbacks_rag import ( # noqa: E402 # isort:skipq
get_checkpoint_callback,
get_early_stopping_callback,
Seq2SeqLoggingCallback,
)
from distributed_pytorch_retriever import RagPyTorchDistributedRetriever # noqa: E402 # isort:skip
from utils_rag import ( # noqa: E402 # isort:skip
calculate_exact_match,
flatten_list,
get_git_info,
is_rag_model,
lmap,
pickle_save,
save_git_info,
save_json,
set_extra_model_params,
Seq2SeqDataset,
)
# need the parent dir module
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
from lightning_base import BaseTransformer, add_generic_args, generic_train # noqa
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
transformers_logging.set_verbosity_info()
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
class CustomDDP(DDPPlugin):
def init_ddp_connection(self, global_rank=None, world_size=None) -> None:
module = self.model
global_rank = global_rank if global_rank is not None else self.cluster_environment.global_rank()
world_size = world_size if world_size is not None else self.cluster_environment.world_size()
os.environ["MASTER_ADDR"] = self.cluster_environment.master_address()
os.environ["MASTER_PORT"] = str(self.cluster_environment.master_port())
if not torch.distributed.is_initialized():
logger.info(f"initializing ddp: GLOBAL_RANK: {global_rank}, MEMBER: {global_rank + 1}/{world_size}")
torch_distrib.init_process_group(self.torch_distributed_backend, rank=global_rank, world_size=world_size)
if module.is_rag_model:
self.distributed_port = module.hparams.distributed_port
if module.distributed_retriever == "pytorch":
module.model.rag.retriever.init_retrieval(self.distributed_port)
elif module.distributed_retriever == "ray" and global_rank == 0:
# For the Ray retriever, only initialize it once when global
# rank is 0.
module.model.rag.retriever.init_retrieval()
class GenerativeQAModule(BaseTransformer):
mode = "generative_qa"
loss_names = ["loss"]
metric_names = ["em"]
val_metric = "em"
def __init__(self, hparams, **kwargs):
# when loading from a pytorch lightning checkpoint, hparams are passed as dict
if isinstance(hparams, dict):
hparams = AttrDict(hparams)
if hparams.model_type == "rag_sequence":
self.model_class = RagSequenceForGeneration
elif hparams.model_type == "rag_token":
self.model_class = RagTokenForGeneration
elif hparams.model_type == "bart":
self.model_class = BartForConditionalGeneration
else:
self.model_class = T5ForConditionalGeneration
self.is_rag_model = is_rag_model(hparams.model_type)
config_class = RagConfig if self.is_rag_model else AutoConfig
config = config_class.from_pretrained(hparams.model_name_or_path)
# set retriever parameters
config.index_name = hparams.index_name or config.index_name
config.passages_path = hparams.passages_path or config.passages_path
config.index_path = hparams.index_path or config.index_path
config.use_dummy_dataset = hparams.use_dummy_dataset
# set extra_model_params for generator configs and load_model
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "attention_dropout", "dropout")
if self.is_rag_model:
if hparams.prefix is not None:
config.generator.prefix = hparams.prefix
config.label_smoothing = hparams.label_smoothing
hparams, config.generator = set_extra_model_params(extra_model_params, hparams, config.generator)
if hparams.distributed_retriever == "pytorch":
retriever = RagPyTorchDistributedRetriever.from_pretrained(hparams.model_name_or_path, config=config)
elif hparams.distributed_retriever == "ray":
# The Ray retriever needs the handles to the retriever actors.
retriever = RagRayDistributedRetriever.from_pretrained(
hparams.model_name_or_path, hparams.actor_handles, config=config
)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config, retriever=retriever)
prefix = config.question_encoder.prefix
else:
if hparams.prefix is not None:
config.prefix = hparams.prefix
hparams, config = set_extra_model_params(extra_model_params, hparams, config)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config)
prefix = config.prefix
tokenizer = (
RagTokenizer.from_pretrained(hparams.model_name_or_path)
if self.is_rag_model
else AutoTokenizer.from_pretrained(hparams.model_name_or_path)
)
super().__init__(hparams, config=config, tokenizer=tokenizer, model=model)
save_git_info(self.hparams.output_dir)
self.output_dir = Path(self.hparams.output_dir)
self.metrics_save_path = Path(self.output_dir) / "metrics.json"
self.hparams_save_path = Path(self.output_dir) / "hparams.pkl"
pickle_save(self.hparams, self.hparams_save_path)
self.step_count = 0
self.metrics = defaultdict(list)
self.dataset_kwargs: dict = dict(
data_dir=self.hparams.data_dir,
max_source_length=self.hparams.max_source_length,
prefix=prefix or "",
)
n_observations_per_split = {
"train": self.hparams.n_train,
"val": self.hparams.n_val,
"test": self.hparams.n_test,
}
self.n_obs = {k: v if v >= 0 else None for k, v in n_observations_per_split.items()}
self.target_lens = {
"train": self.hparams.max_target_length,
"val": self.hparams.val_max_target_length,
"test": self.hparams.test_max_target_length,
}
assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
self.hparams.git_sha = get_git_info()["repo_sha"]
self.num_workers = hparams.num_workers
self.distributed_port = self.hparams.distributed_port
# For single GPU training, init_ddp_connection is not called.
# So we need to initialize the retrievers here.
if hparams.gpus <= 1:
if hparams.distributed_retriever == "ray":
self.model.retriever.init_retrieval()
elif hparams.distributed_retriever == "pytorch":
self.model.retriever.init_retrieval(self.distributed_port)
self.distributed_retriever = hparams.distributed_retriever
def forward(self, input_ids, **kwargs):
return self.model(input_ids, **kwargs)
def ids_to_clean_text(self, generated_ids: List[int]):
gen_text = self.tokenizer.batch_decode(
generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
return lmap(str.strip, gen_text)
def _step(self, batch: dict) -> Tuple:
source_ids, source_mask, target_ids = batch["input_ids"], batch["attention_mask"], batch["decoder_input_ids"]
rag_kwargs = {}
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(target_ids)
lm_labels = target_ids
elif isinstance(self.model, BartForConditionalGeneration):
decoder_input_ids = target_ids[:, :-1].contiguous()
lm_labels = target_ids[:, 1:].clone()
else:
assert self.is_rag_model
generator = self.model.rag.generator
if isinstance(generator, T5ForConditionalGeneration):
decoder_start_token_id = generator.config.decoder_start_token_id
decoder_input_ids = (
torch.cat(
[torch.tensor([[decoder_start_token_id]] * target_ids.shape[0]).to(target_ids), target_ids],
dim=1,
)
if target_ids.shape[0] < self.target_lens["train"]
else generator._shift_right(target_ids)
)
elif isinstance(generator, BartForConditionalGeneration):
decoder_input_ids = target_ids
lm_labels = decoder_input_ids
rag_kwargs["reduce_loss"] = True
assert decoder_input_ids is not None
outputs = self(
source_ids,
attention_mask=source_mask,
decoder_input_ids=decoder_input_ids,
use_cache=False,
labels=lm_labels,
**rag_kwargs,
)
loss = outputs["loss"]
return (loss,)
@property
def pad(self) -> int:
raise NotImplementedError("pad not implemented")
def training_step(self, batch, batch_idx) -> Dict:
loss_tensors = self._step(batch)
logs = {name: loss.detach() for name, loss in zip(self.loss_names, loss_tensors)}
# tokens per batch
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
logs["tpb"] = (
batch["input_ids"].ne(src_pad_token_id).sum() + batch["decoder_input_ids"].ne(tgt_pad_token_id).sum()
)
return {"loss": loss_tensors[0], "log": logs}
def validation_step(self, batch, batch_idx) -> Dict:
return self._generative_step(batch)
def validation_epoch_end(self, outputs, prefix="val") -> Dict:
self.step_count += 1
losses = {k: torch.stack([x[k] for x in outputs]).mean() for k in self.loss_names}
loss = losses["loss"]
gen_metrics = {
k: np.array([x[k] for x in outputs]).mean() for k in self.metric_names + ["gen_time", "gen_len"]
}
metrics_tensor: torch.FloatTensor = torch.tensor(gen_metrics[self.val_metric]).type_as(loss)
gen_metrics.update({k: v.item() for k, v in losses.items()})
# fix for https://github.com/PyTorchLightning/pytorch-lightning/issues/2424
if dist.is_initialized():
dist.all_reduce(metrics_tensor, op=dist.ReduceOp.SUM)
metrics_tensor = metrics_tensor / dist.get_world_size()
gen_metrics.update({self.val_metric: metrics_tensor.item()})
losses.update(gen_metrics)
metrics = {f"{prefix}_avg_{k}": x for k, x in losses.items()}
metrics["step_count"] = self.step_count
self.save_metrics(metrics, prefix) # writes to self.metrics_save_path
preds = flatten_list([x["preds"] for x in outputs])
return {"log": metrics, "preds": preds, f"{prefix}_loss": loss, f"{prefix}_{self.val_metric}": metrics_tensor}
def save_metrics(self, latest_metrics, type_path) -> None:
self.metrics[type_path].append(latest_metrics)
save_json(self.metrics, self.metrics_save_path)
def calc_generative_metrics(self, preds, target) -> Dict:
return calculate_exact_match(preds, target)
def _generative_step(self, batch: dict) -> dict:
start_time = time.time()
batch = BatchEncoding(batch).to(device=self.model.device)
generated_ids = self.model.generate(
batch["input_ids"],
attention_mask=batch["attention_mask"],
do_deduplication=False, # rag specific parameter
use_cache=True,
min_length=1,
max_length=self.target_lens["val"],
)
gen_time = (time.time() - start_time) / batch["input_ids"].shape[0]
preds: List[str] = self.ids_to_clean_text(generated_ids)
target: List[str] = self.ids_to_clean_text(batch["decoder_input_ids"])
loss_tensors = self._step(batch)
base_metrics = {name: loss for name, loss in zip(self.loss_names, loss_tensors)}
gen_metrics: Dict = self.calc_generative_metrics(preds, target)
summ_len = np.mean(lmap(len, generated_ids))
base_metrics.update(gen_time=gen_time, gen_len=summ_len, preds=preds, target=target, **gen_metrics)
return base_metrics
def test_step(self, batch, batch_idx):
return self._generative_step(batch)
def test_epoch_end(self, outputs):
return self.validation_epoch_end(outputs, prefix="test")
def get_dataset(self, type_path) -> Seq2SeqDataset:
n_obs = self.n_obs[type_path]
max_target_length = self.target_lens[type_path]
dataset = Seq2SeqDataset(
self.tokenizer,
type_path=type_path,
n_obs=n_obs,
max_target_length=max_target_length,
**self.dataset_kwargs,
)
return dataset
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
dataset = self.get_dataset(type_path)
dataloader = DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=shuffle,
num_workers=self.num_workers,
)
return dataloader
def train_dataloader(self) -> DataLoader:
dataloader = self.get_dataloader("train", batch_size=self.hparams.train_batch_size, shuffle=True)
return dataloader
def val_dataloader(self) -> DataLoader:
return self.get_dataloader("val", batch_size=self.hparams.eval_batch_size)
def test_dataloader(self) -> DataLoader:
return self.get_dataloader("test", batch_size=self.hparams.eval_batch_size)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("checkpoint{}".format(self.step_count))
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
add_generic_args(parser, root_dir)
parser.add_argument(
"--max_source_length",
default=128,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument(
"--max_target_length",
default=25,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument(
"--val_max_target_length",
default=25,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument(
"--test_max_target_length",
default=25,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_val", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_test", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--label_smoothing", type=float, default=0.0, required=False)
parser.add_argument(
"--prefix",
type=str,
default=None,
help="Prefix added at the beginning of each text, typically used with T5-based models.",
)
parser.add_argument(
"--early_stopping_patience",
type=int,
default=-1,
required=False,
help="-1 means never early stop. early_stopping_patience is measured in validation checks, not epochs. So val_check_interval will effect it.",
)
parser.add_argument(
"--distributed-port", type=int, default=-1, required=False, help="Port number for distributed training."
)
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart", "t5"],
type=str,
help="RAG model type: sequence or token, if none specified, the type is inferred from the model_name_or_path",
)
return parser
@staticmethod
def add_retriever_specific_args(parser):
parser.add_argument(
"--index_name",
type=str,
default=None,
help="Name of the index to use: 'hf' for a canonical dataset from the datasets library (default), 'custom' for a local index, or 'legacy' for the orignal one)",
)
parser.add_argument(
"--passages_path",
type=str,
default=None,
help="Path to the dataset of passages for custom index. More info about custom indexes in the RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`",
)
parser.add_argument(
"--index_path",
type=str,
default=None,
help="Path to the faiss index for custom index. More info about custom indexes in the RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`",
)
parser.add_argument(
"--distributed_retriever",
choices=["ray", "pytorch"],
type=str,
default="pytorch",
help="What implementation to use for distributed retriever? If "
"pytorch is selected, the index is loaded on training "
"worker 0, and torch.distributed is used to handle "
"communication between training worker 0, and the other "
"training workers. If ray is selected, the Ray library is "
"used to create load the index on separate processes, "
"and Ray handles the communication between the training "
"workers and the retrieval actors.",
)
parser.add_argument(
"--use_dummy_dataset",
type=bool,
default=False,
help="Whether to use the dummy version of the dataset index. More info about custom indexes in the RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`",
)
return parser
@staticmethod
def add_ray_specific_args(parser):
# Ray cluster address.
parser.add_argument(
"--ray-address",
default="auto",
type=str,
help="The address of the Ray cluster to connect to. If not "
"specified, Ray will attempt to automatically detect the "
"cluster. Has no effect if pytorch is used as the distributed "
"retriever.",
)
parser.add_argument(
"--num_retrieval_workers",
type=int,
default=1,
help="The number of retrieval actors to use when Ray is selected"
"for the distributed retriever. Has no effect when "
"distributed_retriever is set to pytorch.",
)
return parser
def main(args=None, model=None) -> GenerativeQAModule:
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
args = args or parser.parse_args()
Path(args.output_dir).mkdir(exist_ok=True)
named_actors = []
if args.distributed_retriever == "ray" and args.gpus > 1:
if not is_ray_available():
raise RuntimeError("Please install Ray to use the Ray " "distributed retriever.")
# Connect to an existing Ray cluster.
try:
ray.init(address=args.ray_address, namespace="rag")
except (ConnectionError, ValueError):
logger.warning(
"Connection to Ray cluster failed. Make sure a Ray"
"cluster is running by either using Ray's cluster "
"launcher (`ray up`) or by manually starting Ray on "
"each node via `ray start --head` for the head node "
"and `ray start --address='<ip address>:6379'` for "
"additional nodes. See "
"https://docs.ray.io/en/master/cluster/index.html "
"for more info."
)
raise
# Create Ray actors only for rank 0.
if ("LOCAL_RANK" not in os.environ or int(os.environ["LOCAL_RANK"]) == 0) and (
"NODE_RANK" not in os.environ or int(os.environ["NODE_RANK"]) == 0
):
remote_cls = ray.remote(RayRetriever)
named_actors = [
remote_cls.options(name="retrieval_worker_{}".format(i)).remote()
for i in range(args.num_retrieval_workers)
]
else:
logger.info(
"Getting named actors for NODE_RANK {}, LOCAL_RANK {}".format(
os.environ["NODE_RANK"], os.environ["LOCAL_RANK"]
)
)
named_actors = [ray.get_actor("retrieval_worker_{}".format(i)) for i in range(args.num_retrieval_workers)]
args.actor_handles = named_actors
assert args.actor_handles == named_actors
if model is None:
model: GenerativeQAModule = GenerativeQAModule(args)
dataset = Path(args.data_dir).name
if (
args.logger_name == "default"
or args.fast_dev_run
or str(args.output_dir).startswith("/tmp")
or str(args.output_dir).startswith("/var")
):
training_logger = True # don't pollute wandb logs unnecessarily
elif args.logger_name == "wandb":
from pytorch_lightning.loggers import WandbLogger
project = os.environ.get("WANDB_PROJECT", dataset)
training_logger = WandbLogger(name=model.output_dir.name, project=project)
elif args.logger_name == "wandb_shared":
from pytorch_lightning.loggers import WandbLogger
training_logger = WandbLogger(name=model.output_dir.name, project=f"hf_{dataset}")
es_callback = (
get_early_stopping_callback(model.val_metric, args.early_stopping_patience)
if args.early_stopping_patience >= 0
else False
)
trainer: pl.Trainer = generic_train(
model,
args,
logging_callback=Seq2SeqLoggingCallback(),
checkpoint_callback=get_checkpoint_callback(args.output_dir, model.val_metric),
early_stopping_callback=es_callback,
logger=training_logger,
custom_ddp_plugin=CustomDDP() if args.gpus > 1 else None,
profiler=pl.profiler.AdvancedProfiler() if args.profile else None,
)
pickle_save(model.hparams, model.output_dir / "hparams.pkl")
if not args.do_predict:
return model
# test() without a model tests using the best checkpoint automatically
trainer.test()
return model
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
parser = GenerativeQAModule.add_ray_specific_args(parser)
# Pytorch Lightning Profiler
parser.add_argument(
"--profile",
action="store_true",
help="If True, use pytorch_lightning.profiler.AdvancedProfiler to profile the Trainer.",
)
args = parser.parse_args()
main(args)
| 25,623 | 40.462783 | 197 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/distributed_pytorch_retriever.py | import logging
import os
from typing import List, Tuple
import numpy as np
import psutil
import torch
import torch.distributed as dist
from transformers import RagRetriever
logger = logging.getLogger(__name__)
class RagPyTorchDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``torch.distributed`` communication package. During training all workers
initialize their own instance of the retriever, however, only the main worker loads the index into memory. The index is stored
in cpu memory. The index will also work well in a non-distributed setup.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
index (:class:`~transformers.models.rag.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, index=None):
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.process_group = None
def init_retrieval(self, distributed_port: int):
"""
Retriever initialization function, needs to be called from the training process. The function sets some common parameters
and environment variables. On top of that, (only) the main process in the process group loads the index into memory.
Args:
distributed_port (:obj:`int`):
The port on which the main communication of the training run is carried out. We set the port for retrieval-related
communication as ``distributed_port + 1``.
"""
logger.info("initializing retrieval")
# initializing a separate process group for retrieval as the default
# nccl backend doesn't support gather/scatter operations while gloo
# is too slow to replace nccl for the core gpu communication
if dist.is_initialized():
logger.info("dist initialized")
# needs to be set manually
os.environ["GLOO_SOCKET_IFNAME"] = self._infer_socket_ifname()
# avoid clash with the NCCL port
os.environ["MASTER_PORT"] = str(distributed_port + 1)
self.process_group = dist.new_group(ranks=None, backend="gloo")
# initialize retriever only on the main worker
if not dist.is_initialized() or self._is_main():
logger.info("dist not initialized / main")
self.index.init_index()
# all processes wait untill the retriever is initialized by the main process
if dist.is_initialized():
torch.distributed.barrier(group=self.process_group)
def _is_main(self):
return dist.get_rank(group=self.process_group) == 0
def _scattered(self, scatter_list, target_shape, target_type=torch.float32):
target_tensor = torch.empty(target_shape, dtype=target_type)
dist.scatter(target_tensor, src=0, scatter_list=scatter_list, group=self.process_group)
return target_tensor
def _infer_socket_ifname(self):
addrs = psutil.net_if_addrs()
# a hacky way to deal with varying network interface names
ifname = next((addr for addr in addrs if addr.startswith("e")), None)
return ifname
def retrieve(self, question_hidden_states: np.ndarray, n_docs: int) -> Tuple[np.ndarray, List[dict]]:
"""
Retrieves documents for specified ``question_hidden_states``. The main process, which has the access to the index stored in memory, gathers queries
from all the processes in the main training process group, performs the retrieval and scatters back the results.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
# single GPU training
if not dist.is_initialized():
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
return retrieved_doc_embeds, doc_ids, self.index.get_doc_dicts(doc_ids)
# distributed training
world_size = dist.get_world_size(group=self.process_group)
# gather logic
gather_list = None
if self._is_main():
gather_list = [torch.empty(question_hidden_states.shape, dtype=torch.float32) for _ in range(world_size)]
dist.gather(torch.tensor(question_hidden_states), dst=0, gather_list=gather_list, group=self.process_group)
# scatter logic
n_queries = question_hidden_states.shape[0]
scatter_ids = []
scatter_vectors = []
if self._is_main():
assert len(gather_list) == world_size
ids, vectors = self._main_retrieve(torch.cat(gather_list).numpy(), n_docs)
ids, vectors = torch.tensor(ids), torch.tensor(vectors)
scatter_ids = self._chunk_tensor(ids, n_queries)
scatter_vectors = self._chunk_tensor(vectors, n_queries)
doc_ids = self._scattered(scatter_ids, [n_queries, n_docs], target_type=torch.int64)
retrieved_doc_embeds = self._scattered(scatter_vectors, [n_queries, n_docs, question_hidden_states.shape[1]])
return retrieved_doc_embeds.numpy(), doc_ids.numpy(), self.index.get_doc_dicts(doc_ids)
| 6,539 | 46.05036 | 155 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/test_distributed_retriever.py | import json
import os
import shutil
import sys
import tempfile
import unittest
from unittest import TestCase
from unittest.mock import patch
import numpy as np
from datasets import Dataset
import faiss
from transformers import BartConfig, BartTokenizer, DPRConfig, DPRQuestionEncoderTokenizer, RagConfig
from transformers.file_utils import is_datasets_available, is_faiss_available, is_psutil_available, is_torch_available
from transformers.integrations import is_ray_available
from transformers.models.bert.tokenization_bert import VOCAB_FILES_NAMES as DPR_VOCAB_FILES_NAMES
from transformers.models.rag.retrieval_rag import CustomHFIndex, RagRetriever
from transformers.models.roberta.tokenization_roberta import VOCAB_FILES_NAMES as BART_VOCAB_FILES_NAMES
from transformers.testing_utils import require_ray
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # noqa: E402 # isort:skip
if is_torch_available():
from distributed_pytorch_retriever import RagPyTorchDistributedRetriever # noqa: E402 # isort:skip
else:
RagPyTorchDistributedRetriever = None
if is_ray_available():
import ray # noqa: E402 # isort:skip
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever # noqa: E402 # isort:skip
else:
ray = None
RagRayDistributedRetriever = None
RayRetriever = None
def require_distributed_retrieval(test_case):
"""
Decorator marking a test that requires a set of dependencies necessary for pefrorm retrieval with
:class:`~transformers.RagRetriever`.
These tests are skipped when respective libraries are not installed.
"""
if not (is_datasets_available() and is_faiss_available() and is_psutil_available()):
test_case = unittest.skip("test requires Datasets, Faiss, psutil")(test_case)
return test_case
@require_distributed_retrieval
class RagRetrieverTest(TestCase):
def setUp(self):
self.tmpdirname = tempfile.mkdtemp()
self.retrieval_vector_size = 8
# DPR tok
vocab_tokens = [
"[UNK]",
"[CLS]",
"[SEP]",
"[PAD]",
"[MASK]",
"want",
"##want",
"##ed",
"wa",
"un",
"runn",
"##ing",
",",
"low",
"lowest",
]
dpr_tokenizer_path = os.path.join(self.tmpdirname, "dpr_tokenizer")
os.makedirs(dpr_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(dpr_tokenizer_path, DPR_VOCAB_FILES_NAMES["vocab_file"])
with open(self.vocab_file, "w", encoding="utf-8") as vocab_writer:
vocab_writer.write("".join([x + "\n" for x in vocab_tokens]))
# BART tok
vocab = [
"l",
"o",
"w",
"e",
"r",
"s",
"t",
"i",
"d",
"n",
"\u0120",
"\u0120l",
"\u0120n",
"\u0120lo",
"\u0120low",
"er",
"\u0120lowest",
"\u0120newer",
"\u0120wider",
"<unk>",
]
vocab_tokens = dict(zip(vocab, range(len(vocab))))
merges = ["#version: 0.2", "\u0120 l", "\u0120l o", "\u0120lo w", "e r", ""]
self.special_tokens_map = {"unk_token": "<unk>"}
bart_tokenizer_path = os.path.join(self.tmpdirname, "bart_tokenizer")
os.makedirs(bart_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(bart_tokenizer_path, BART_VOCAB_FILES_NAMES["vocab_file"])
self.merges_file = os.path.join(bart_tokenizer_path, BART_VOCAB_FILES_NAMES["merges_file"])
with open(self.vocab_file, "w", encoding="utf-8") as fp:
fp.write(json.dumps(vocab_tokens) + "\n")
with open(self.merges_file, "w", encoding="utf-8") as fp:
fp.write("\n".join(merges))
def get_dpr_tokenizer(self) -> DPRQuestionEncoderTokenizer:
return DPRQuestionEncoderTokenizer.from_pretrained(os.path.join(self.tmpdirname, "dpr_tokenizer"))
def get_bart_tokenizer(self) -> BartTokenizer:
return BartTokenizer.from_pretrained(os.path.join(self.tmpdirname, "bart_tokenizer"))
def tearDown(self):
shutil.rmtree(self.tmpdirname)
def get_dummy_dataset(self):
dataset = Dataset.from_dict(
{
"id": ["0", "1"],
"text": ["foo", "bar"],
"title": ["Foo", "Bar"],
"embeddings": [np.ones(self.retrieval_vector_size), 2 * np.ones(self.retrieval_vector_size)],
}
)
dataset.add_faiss_index("embeddings", string_factory="Flat", metric_type=faiss.METRIC_INNER_PRODUCT)
return dataset
def get_dummy_pytorch_distributed_retriever(
self, init_retrieval: bool, port=12345
) -> RagPyTorchDistributedRetriever:
dataset = self.get_dummy_dataset()
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
)
with patch("transformers.models.rag.retrieval_rag.load_dataset") as mock_load_dataset:
mock_load_dataset.return_value = dataset
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
)
if init_retrieval:
retriever.init_retrieval(port)
return retriever
def get_dummy_ray_distributed_retriever(self, init_retrieval: bool) -> RagRayDistributedRetriever:
# Have to run in local mode because sys.path modifications at top of
# file are not propogated to remote workers.
# https://stackoverflow.com/questions/54338013/parallel-import-a-python-file-from-sibling-folder
ray.init(local_mode=True)
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
)
remote_cls = ray.remote(RayRetriever)
workers = [remote_cls.remote() for _ in range(1)]
with patch("transformers.models.rag.retrieval_rag.load_dataset") as mock_load_dataset:
mock_load_dataset.return_value = self.get_dummy_dataset()
retriever = RagRayDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
retrieval_workers=workers,
)
if init_retrieval:
retriever.init_retrieval()
return retriever
def get_dummy_custom_hf_index_pytorch_retriever(self, init_retrieval: bool, from_disk: bool, port=12345):
dataset = self.get_dummy_dataset()
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
index_name="custom",
)
if from_disk:
config.passages_path = os.path.join(self.tmpdirname, "dataset")
config.index_path = os.path.join(self.tmpdirname, "index.faiss")
dataset.get_index("embeddings").save(os.path.join(self.tmpdirname, "index.faiss"))
dataset.drop_index("embeddings")
dataset.save_to_disk(os.path.join(self.tmpdirname, "dataset"))
del dataset
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
)
else:
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
index=CustomHFIndex(config.retrieval_vector_size, dataset),
)
if init_retrieval:
retriever.init_retrieval(port)
return retriever
def get_dummy_custom_hf_index_ray_retriever(self, init_retrieval: bool, from_disk: bool):
# Have to run in local mode because sys.path modifications at top of
# file are not propogated to remote workers.
# https://stackoverflow.com/questions/54338013/parallel-import-a-python-file-from-sibling-folder
ray.init(local_mode=True)
dataset = self.get_dummy_dataset()
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
index_name="custom",
)
remote_cls = ray.remote(RayRetriever)
workers = [remote_cls.remote() for _ in range(1)]
if from_disk:
config.passages_path = os.path.join(self.tmpdirname, "dataset")
config.index_path = os.path.join(self.tmpdirname, "index.faiss")
dataset.get_index("embeddings").save(os.path.join(self.tmpdirname, "index.faiss"))
dataset.drop_index("embeddings")
dataset.save_to_disk(os.path.join(self.tmpdirname, "dataset"))
del dataset
retriever = RagRayDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
retrieval_workers=workers,
index=CustomHFIndex.load_from_disk(
vector_size=config.retrieval_vector_size,
dataset_path=config.passages_path,
index_path=config.index_path,
),
)
else:
retriever = RagRayDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
retrieval_workers=workers,
index=CustomHFIndex(config.retrieval_vector_size, dataset),
)
if init_retrieval:
retriever.init_retrieval()
return retriever
def distributed_retriever_check(self, retriever: RagRetriever, hidden_states: np.array, n_docs: int) -> None:
retrieved_doc_embeds, doc_ids, doc_dicts = retriever.retrieve(hidden_states, n_docs=n_docs)
self.assertEqual(retrieved_doc_embeds.shape, (2, n_docs, self.retrieval_vector_size))
self.assertEqual(len(doc_dicts), 2)
self.assertEqual(sorted(doc_dicts[0]), ["embeddings", "id", "text", "title"])
self.assertEqual(len(doc_dicts[0]["id"]), n_docs)
self.assertEqual(doc_dicts[0]["id"][0], "1") # max inner product is reached with second doc
self.assertEqual(doc_dicts[1]["id"][0], "0") # max inner product is reached with first doc
self.assertListEqual(doc_ids.tolist(), [[1], [0]])
def test_pytorch_distributed_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_pytorch_distributed_retriever(init_retrieval=True), hidden_states, n_docs
)
def test_custom_hf_index_pytorch_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_pytorch_retriever(init_retrieval=True, from_disk=False),
hidden_states,
n_docs,
)
def test_custom_pytorch_distributed_retriever_retrieve_from_disk(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_pytorch_retriever(init_retrieval=True, from_disk=True),
hidden_states,
n_docs,
)
@require_ray
def test_ray_distributed_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_ray_distributed_retriever(init_retrieval=True), hidden_states, n_docs
)
ray.shutdown()
@require_ray
def test_custom_hf_index_ray_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
with self.assertRaises(ValueError):
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_ray_retriever(init_retrieval=True, from_disk=False),
hidden_states,
n_docs,
)
ray.shutdown()
@require_ray
def test_custom_ray_distributed_retriever_retrieve_from_disk(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_ray_retriever(init_retrieval=True, from_disk=True), hidden_states, n_docs
)
ray.shutdown()
| 13,794 | 39.693215 | 118 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/eval_rag.py | """ Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as transformers_logging
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # isort:skip
from utils_rag import exact_match_score, f1_score # noqa: E402 # isort:skip
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.INFO)
transformers_logging.set_verbosity_info()
def infer_model_type(model_name_or_path):
if "token" in model_name_or_path:
return "rag_token"
if "sequence" in model_name_or_path:
return "rag_sequence"
if "bart" in model_name_or_path:
return "bart"
return None
def metric_max_over_ground_truths(metric_fn, prediction, ground_truths):
return max(metric_fn(prediction, gt) for gt in ground_truths)
def get_scores(args, preds_path, gold_data_path):
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
answers = []
if args.gold_data_mode == "qa":
data = pd.read_csv(gold_data_path, sep="\t", header=None)
for answer_list in data[1]:
ground_truths = ast.literal_eval(answer_list)
answers.append(ground_truths)
else:
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
answers = [[reference] for reference in references]
f1 = em = total = 0
for prediction, ground_truths in zip(hypos, answers):
total += 1
em += metric_max_over_ground_truths(exact_match_score, prediction, ground_truths)
f1 += metric_max_over_ground_truths(f1_score, prediction, ground_truths)
em = 100.0 * em / total
f1 = 100.0 * f1 / total
logger.info(f"F1: {f1:.2f}")
logger.info(f"EM: {em:.2f}")
def get_precision_at_k(args, preds_path, gold_data_path):
k = args.k
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
em = total = 0
for hypo, reference in zip(hypos, references):
hypo_provenance = set(hypo.split("\t")[:k])
ref_provenance = set(reference.split("\t"))
total += 1
em += len(hypo_provenance & ref_provenance) / k
em = 100.0 * em / total
logger.info(f"Precision@{k}: {em: .2f}")
def evaluate_batch_retrieval(args, rag_model, questions):
def strip_title(title):
if title.startswith('"'):
title = title[1:]
if title.endswith('"'):
title = title[:-1]
return title
retriever_input_ids = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions,
return_tensors="pt",
padding=True,
truncation=True,
)["input_ids"].to(args.device)
question_enc_outputs = rag_model.rag.question_encoder(retriever_input_ids)
question_enc_pool_output = question_enc_outputs[0]
result = rag_model.retriever(
retriever_input_ids,
question_enc_pool_output.cpu().detach().to(torch.float32).numpy(),
prefix=rag_model.rag.generator.config.prefix,
n_docs=rag_model.config.n_docs,
return_tensors="pt",
)
all_docs = rag_model.retriever.index.get_doc_dicts(result.doc_ids)
provenance_strings = []
for docs in all_docs:
provenance = [strip_title(title) for title in docs["title"]]
provenance_strings.append("\t".join(provenance))
return provenance_strings
def evaluate_batch_e2e(args, rag_model, questions):
with torch.no_grad():
inputs_dict = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions, return_tensors="pt", padding=True, truncation=True
)
input_ids = inputs_dict.input_ids.to(args.device)
attention_mask = inputs_dict.attention_mask.to(args.device)
outputs = rag_model.generate( # rag_model overwrites generate
input_ids,
attention_mask=attention_mask,
num_beams=args.num_beams,
min_length=args.min_length,
max_length=args.max_length,
early_stopping=False,
num_return_sequences=1,
bad_words_ids=[[0, 0]], # BART likes to repeat BOS tokens, dont allow it to generate more than one
)
answers = rag_model.retriever.generator_tokenizer.batch_decode(outputs, skip_special_tokens=True)
if args.print_predictions:
for q, a in zip(questions, answers):
logger.info("Q: {} - A: {}".format(q, a))
return answers
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart"],
type=str,
help="RAG model type: rag_sequence, rag_token or bart, if none specified, the type is inferred from the model_name_or_path",
)
parser.add_argument(
"--index_name",
default=None,
choices=["exact", "compressed", "legacy"],
type=str,
help="RAG model retriever type",
)
parser.add_argument(
"--index_path",
default=None,
type=str,
help="Path to the retrieval index",
)
parser.add_argument("--n_docs", default=5, type=int, help="Number of retrieved docs")
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained checkpoints or model identifier from huggingface.co/models",
)
parser.add_argument(
"--eval_mode",
choices=["e2e", "retrieval"],
default="e2e",
type=str,
help="Evaluation mode, e2e calculates exact match and F1 of the downstream task, retrieval calculates precision@k.",
)
parser.add_argument("--k", default=1, type=int, help="k for the precision@k calculation")
parser.add_argument(
"--evaluation_set",
default=None,
type=str,
required=True,
help="Path to a file containing evaluation samples",
)
parser.add_argument(
"--gold_data_path",
default=None,
type=str,
required=True,
help="Path to a tab-separated file with gold samples",
)
parser.add_argument(
"--gold_data_mode",
default="qa",
type=str,
choices=["qa", "ans"],
help="Format of the gold data file"
"qa - a single line in the following format: question [tab] answer_list"
"ans - a single line of the gold file contains the expected answer string",
)
parser.add_argument(
"--predictions_path",
type=str,
default="predictions.txt",
help="Name of the predictions file, to be stored in the checkpoints directory",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument(
"--eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--recalculate",
help="Recalculate predictions even if the prediction file exists",
action="store_true",
)
parser.add_argument(
"--num_beams",
default=4,
type=int,
help="Number of beams to be used when generating answers",
)
parser.add_argument("--min_length", default=1, type=int, help="Min length of the generated answers")
parser.add_argument("--max_length", default=50, type=int, help="Max length of the generated answers")
parser.add_argument(
"--print_predictions",
action="store_true",
help="If True, prints predictions while evaluating.",
)
parser.add_argument(
"--print_docs",
action="store_true",
help="If True, prints docs retried while generating.",
)
args = parser.parse_args()
args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
return args
def main(args):
model_kwargs = {}
if args.model_type is None:
args.model_type = infer_model_type(args.model_name_or_path)
assert args.model_type is not None
if args.model_type.startswith("rag"):
model_class = RagTokenForGeneration if args.model_type == "rag_token" else RagSequenceForGeneration
model_kwargs["n_docs"] = args.n_docs
if args.index_name is not None:
model_kwargs["index_name"] = args.index_name
if args.index_path is not None:
model_kwargs["index_path"] = args.index_path
else:
model_class = BartForConditionalGeneration
checkpoints = (
[f.path for f in os.scandir(args.model_name_or_path) if f.is_dir()]
if args.eval_all_checkpoints
else [args.model_name_or_path]
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
score_fn = get_scores if args.eval_mode == "e2e" else get_precision_at_k
evaluate_batch_fn = evaluate_batch_e2e if args.eval_mode == "e2e" else evaluate_batch_retrieval
for checkpoint in checkpoints:
if os.path.exists(args.predictions_path) and (not args.recalculate):
logger.info("Calculating metrics based on an existing predictions file: {}".format(args.predictions_path))
score_fn(args, args.predictions_path, args.gold_data_path)
continue
logger.info("***** Running evaluation for {} *****".format(checkpoint))
logger.info(" Batch size = %d", args.eval_batch_size)
logger.info(" Predictions will be stored under {}".format(args.predictions_path))
if args.model_type.startswith("rag"):
retriever = RagRetriever.from_pretrained(checkpoint, **model_kwargs)
model = model_class.from_pretrained(checkpoint, retriever=retriever, **model_kwargs)
model.retriever.init_retrieval()
else:
model = model_class.from_pretrained(checkpoint, **model_kwargs)
model.to(args.device)
with open(args.evaluation_set, "r") as eval_file, open(args.predictions_path, "w") as preds_file:
questions = []
for line in tqdm(eval_file):
questions.append(line.strip())
if len(questions) == args.eval_batch_size:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers) + "\n")
preds_file.flush()
questions = []
if len(questions) > 0:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers))
preds_file.flush()
score_fn(args, args.predictions_path, args.gold_data_path)
if __name__ == "__main__":
args = get_args()
main(args)
| 11,101 | 34.469649 | 132 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/lightning_base.py | import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, stage):
if stage == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class InitCallback(pl.Callback):
# This method is better that using a custom DDP plugging with the latest pytorch-lightning (@shamanez)
def on_sanity_check_start(self, trainer, pl_module):
if (
trainer.is_global_zero and trainer.global_rank == 0
): # we initialize the retriever only on master worker with RAY. In new pytorch-lightning accelorators are removed.
pl_module.model.rag.retriever.init_retrieval() # better to use hook functions.
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help="For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html",
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
custom_ddp_plugin=None,
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
# TODO: remove with PyTorch 1.6 since pl uses native amp
if args.fp16:
train_params["precision"] = 16
# train_params["amp_level"] = args.fp16_opt_level
if args.gpus > 1:
train_params["accelerator"] = "auto" # "ddp"
train_params["strategy"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
train_params["profiler"] = None # extra_train_kwargs.get("profiler", None) #get unwanted logs
train_params["devices"] = "auto"
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks + [checkpoint_callback] + [InitCallback()],
# plugins=[custom_ddp_plugin],
logger=logger,
**train_params,
)
if args.do_train:
trainer.fit(model)
return trainer
| 15,609 | 37.734491 | 124 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/callbacks_rag.py | import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_parameters = filter(lambda p: p.requires_grad, model.parameters())
params = sum([np.prod(p.size()) for p in model_parameters])
return params
logger = logging.getLogger(__name__)
def get_checkpoint_callback(output_dir, metric):
"""Saves the best model by validation EM score."""
if metric == "rouge2":
exp = "{val_avg_rouge2:.4f}-{step_count}"
elif metric == "bleu":
exp = "{val_avg_bleu:.4f}-{step_count}"
elif metric == "em":
exp = "{val_avg_em:.4f}-{step_count}"
else:
raise NotImplementedError(
f"seq2seq callbacks only support rouge2 and bleu, got {metric}, You can make your own by adding to this function."
)
checkpoint_callback = ModelCheckpoint(
dirpath=output_dir,
filename=exp,
monitor=f"val_{metric}",
mode="max",
save_top_k=3,
every_n_epochs=1, # maybe save a checkpoint every time val is run, not just end of epoch.
)
return checkpoint_callback
def get_early_stopping_callback(metric, patience):
return EarlyStopping(
monitor=f"val_{metric}", # does this need avg?
mode="min" if "loss" in metric else "max",
patience=patience,
verbose=True,
)
class Seq2SeqLoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
pl_module.logger.log_metrics(lrs)
@rank_zero_only
def _write_logs(
self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
) -> None:
logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
metrics = trainer.callback_metrics
trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
# Log results
od = Path(pl_module.hparams.output_dir)
if type_path == "test":
results_file = od / "test_results.txt"
generations_file = od / "test_generations.txt"
else:
# this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
# If people want this it will be easy enough to add back.
results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
results_file.parent.mkdir(exist_ok=True)
generations_file.parent.mkdir(exist_ok=True)
with open(results_file, "a+") as writer:
for key in sorted(metrics):
if key in ["log", "progress_bar", "preds"]:
continue
val = metrics[key]
if isinstance(val, torch.Tensor):
val = val.item()
msg = f"{key}: {val:.6f}\n"
writer.write(msg)
if not save_generations:
return
if "preds" in metrics:
content = "\n".join(metrics["preds"])
generations_file.open("w+").write(content)
@rank_zero_only
def on_train_start(self, trainer, pl_module):
try:
npars = pl_module.model.model.num_parameters()
except AttributeError:
npars = pl_module.model.num_parameters()
n_trainable_pars = count_trainable_parameters(pl_module)
# mp stands for million parameters
trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
@rank_zero_only
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
save_json(pl_module.metrics, pl_module.metrics_save_path)
return self._write_logs(trainer, pl_module, "test")
@rank_zero_only
def on_validation_end(self, trainer: pl.Trainer, pl_module):
save_json(pl_module.metrics, pl_module.metrics_save_path)
# Uncommenting this will save val generations
# return self._write_logs(trainer, pl_module, "valid")
| 4,428 | 36.854701 | 126 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/parse_dpr_relevance_data.py | """
This script reads DPR retriever training data and parses each datapoint. We save a line per datapoint.
Each line consists of the query followed by a tab-separated list of Wikipedia page titles constituting
positive contexts for a given query.
"""
import argparse
import json
from tqdm import tqdm
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--src_path",
type=str,
default="biencoder-nq-dev.json",
help="Path to raw DPR training data",
)
parser.add_argument(
"--evaluation_set",
type=str,
help="where to store parsed evaluation_set file",
)
parser.add_argument(
"--gold_data_path",
type=str,
help="where to store parsed gold_data_path file",
)
args = parser.parse_args()
with open(args.src_path, "r") as src_file, open(args.evaluation_set, "w") as eval_file, open(
args.gold_data_path, "w"
) as gold_file:
dpr_records = json.load(src_file)
for dpr_record in tqdm(dpr_records):
question = dpr_record["question"]
contexts = [context["title"] for context in dpr_record["positive_ctxs"]]
eval_file.write(question + "\n")
gold_file.write("\t".join(contexts) + "\n")
if __name__ == "__main__":
main()
| 1,353 | 27.208333 | 102 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/_test_finetune_rag.py | import json
import logging
import os
import sys
from pathlib import Path
import finetune_rag
from transformers.file_utils import is_apex_available
from transformers.testing_utils import (
TestCasePlus,
execute_subprocess_async,
require_ray,
require_torch_gpu,
require_torch_multi_gpu,
)
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
class RagFinetuneExampleTests(TestCasePlus):
def _create_dummy_data(self, data_dir):
os.makedirs(data_dir, exist_ok=True)
contents = {"source": "What is love ?", "target": "life"}
n_lines = {"train": 12, "val": 2, "test": 2}
for split in ["train", "test", "val"]:
for field in ["source", "target"]:
content = "\n".join([contents[field]] * n_lines[split])
with open(os.path.join(data_dir, f"{split}.{field}"), "w") as f:
f.write(content)
def _run_finetune(self, gpus: int, distributed_retriever: str = "pytorch"):
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
tmp_dir = self.get_auto_remove_tmp_dir()
output_dir = os.path.join(tmp_dir, "output")
data_dir = os.path.join(tmp_dir, "data")
self._create_dummy_data(data_dir=data_dir)
testargs = f"""
--data_dir {data_dir} \
--output_dir {output_dir} \
--model_name_or_path facebook/rag-sequence-base \
--model_type rag_sequence \
--do_train \
--do_predict \
--n_val -1 \
--val_check_interval 1.0 \
--train_batch_size 2 \
--eval_batch_size 1 \
--max_source_length 25 \
--max_target_length 25 \
--val_max_target_length 25 \
--test_max_target_length 25 \
--label_smoothing 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
--weight_decay 0.001 \
--adam_epsilon 1e-08 \
--max_grad_norm 0.1 \
--lr_scheduler polynomial \
--learning_rate 3e-04 \
--num_train_epochs 1 \
--warmup_steps 4 \
--gradient_accumulation_steps 1 \
--distributed-port 8787 \
--use_dummy_dataset 1 \
--distributed_retriever {distributed_retriever} \
""".split()
if gpus > 0:
testargs.append(f"--gpus={gpus}")
if is_apex_available():
testargs.append("--fp16")
else:
testargs.append("--gpus=0")
testargs.append("--distributed_backend=ddp_cpu")
testargs.append("--num_processes=2")
cmd = [sys.executable, str(Path(finetune_rag.__file__).resolve())] + testargs
execute_subprocess_async(cmd, env=self.get_env())
metrics_save_path = os.path.join(output_dir, "metrics.json")
with open(metrics_save_path) as f:
result = json.load(f)
return result
@require_torch_gpu
def test_finetune_gpu(self):
result = self._run_finetune(gpus=1)
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
@require_torch_multi_gpu
def test_finetune_multigpu(self):
result = self._run_finetune(gpus=2)
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
@require_torch_gpu
@require_ray
def test_finetune_gpu_ray_retrieval(self):
result = self._run_finetune(gpus=1, distributed_retriever="ray")
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
@require_torch_multi_gpu
@require_ray
def test_finetune_multigpu_ray_retrieval(self):
result = self._run_finetune(gpus=1, distributed_retriever="ray")
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
| 3,969 | 34.765766 | 85 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/__init__.py | import os
import sys
sys.path.insert(1, os.path.dirname(os.path.realpath(__file__)))
| 87 | 13.666667 | 63 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag/distributed_ray_retriever.py | import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(self, config, question_encoder_tokenizer, generator_tokenizer, index):
if not self.initialized:
self.retriever = RagRetriever(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.initialized = True
def init_retrieval(self):
self.retriever.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
doc_ids, retrieved_doc_embeds = self.retriever._main_retrieve(question_hidden_states, n_docs)
return doc_ids, retrieved_doc_embeds
class RagRayDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``Ray`` API, a library
for building distributed applications (https://docs.ray.io/en/master/).
package. During training, all training workers initialize their own
instance of a `RagRayDistributedRetriever`, and each instance of
this distributed retriever shares a common set of Retrieval Ray
Actors (https://docs.ray.io/en/master/walkthrough.html#remote
-classes-actors) that load the index on separate processes. Ray
handles the communication between the `RagRayDistributedRetriever`
instances and the remote Ray actors. If training is done in a
non-distributed setup, the index will simply be loaded in the same
process as the training worker and Ray will not be used.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
retrieval_workers (:obj:`List[ray.ActorClass(RayRetriever)]`): A list of already initialized `RayRetriever` actors.
These actor classes run on remote processes and are responsible for performing the index lookup.
index (:class:`~transformers.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, retrieval_workers, index=None):
if index is not None and index.is_initialized() and len(retrieval_workers) > 0:
raise ValueError(
"When using Ray for distributed fine-tuning, "
"you'll need to provide the paths instead, "
"as the dataset and the index are loaded "
"separately. More info in examples/rag/use_own_knowledge_dataset.py "
)
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.retrieval_workers = retrieval_workers
if len(self.retrieval_workers) > 0:
ray.get(
[
worker.create_rag_retriever.remote(config, question_encoder_tokenizer, generator_tokenizer, index)
for worker in self.retrieval_workers
]
)
def init_retrieval(self):
"""
Retriever initialization function, needs to be called from the
training process. This function triggers retrieval initialization
for all retrieval actors if using distributed setting, or loads
index into current process if training is not distributed.
"""
logger.info("initializing retrieval")
if len(self.retrieval_workers) > 0:
ray.get([worker.init_retrieval.remote() for worker in self.retrieval_workers])
else:
# Non-distributed training. Load index into this same process.
self.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
"""
Retrieves documents for specified ``question_hidden_states``. If
running training with multiple workers, a random retrieval actor is
selected to perform the index lookup and return the result.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
if len(self.retrieval_workers) > 0:
# Select a random retrieval actor.
random_worker = self.retrieval_workers[random.randint(0, len(self.retrieval_workers) - 1)]
doc_ids, retrieved_doc_embeds = ray.get(random_worker.retrieve.remote(question_hidden_states, n_docs))
else:
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
return retrieved_doc_embeds, doc_ids, self.index.get_doc_dicts(doc_ids)
@classmethod
def get_tokenizers(cls, retriever_name_or_path, indexed_dataset=None, **kwargs):
return super(RagRayDistributedRetriever, cls).get_tokenizers(retriever_name_or_path, indexed_dataset, **kwargs)
@classmethod
def from_pretrained(cls, retriever_name_or_path, actor_handles, indexed_dataset=None, **kwargs):
config = kwargs.pop("config", None) or RagConfig.from_pretrained(retriever_name_or_path, **kwargs)
rag_tokenizer = RagTokenizer.from_pretrained(retriever_name_or_path, config=config)
question_encoder_tokenizer = rag_tokenizer.question_encoder
generator_tokenizer = rag_tokenizer.generator
if indexed_dataset is not None:
config.index_name = "custom"
index = CustomHFIndex(config.retrieval_vector_size, indexed_dataset)
else:
index = cls._build_index(config)
return cls(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
retrieval_workers=actor_handles,
index=index,
)
| 7,185 | 46.276316 | 132 | py |
robust-transformers | robust-transformers-main/examples/research_projects/pplm/run_pplm.py | #! /usr/bin/env python3
# coding=utf-8
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Example command with bag of words:
python run_pplm.py -B space --cond_text "The president" --length 100 --gamma 1.5 --num_iterations 3 --num_samples 10 --stepsize 0.01 --window_length 5 --kl_scale 0.01 --gm_scale 0.95
Example command with discriminator:
python run_pplm.py -D sentiment --class_label 3 --cond_text "The lake" --length 10 --gamma 1.0 --num_iterations 30 --num_samples 10 --stepsize 0.01 --kl_scale 0.01 --gm_scale 0.95
"""
import argparse
import json
from operator import add
from typing import List, Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from tqdm import trange
from pplm_classification_head import ClassificationHead
from transformers import GPT2LMHeadModel, GPT2Tokenizer
from transformers.file_utils import cached_path
PPLM_BOW = 1
PPLM_DISCRIM = 2
PPLM_BOW_DISCRIM = 3
SMALL_CONST = 1e-15
BIG_CONST = 1e10
BAG_OF_WORDS_ARCHIVE_MAP = {
"legal": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/legal.txt",
"military": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/military.txt",
"politics": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/politics.txt",
"religion": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/religion.txt",
"science": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/science.txt",
"space": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/space.txt",
"technology": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/technology.txt",
}
DISCRIMINATOR_MODELS_PARAMS = {
"clickbait": {
"url": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/discriminators/clickbait_classifier_head.pt",
"class_size": 2,
"embed_size": 1024,
"class_vocab": {"non_clickbait": 0, "clickbait": 1},
"default_class": 1,
"pretrained_model": "gpt2-medium",
},
"sentiment": {
"url": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/discriminators/SST_classifier_head.pt",
"class_size": 5,
"embed_size": 1024,
"class_vocab": {"very_positive": 2, "very_negative": 3},
"default_class": 3,
"pretrained_model": "gpt2-medium",
},
}
def top_k_filter(logits, k, probs=False):
"""
Masks everything but the k top entries as -infinity (1e10).
Used to mask logits such that e^-infinity -> 0 won't contribute to the
sum of the denominator.
"""
if k == 0:
return logits
else:
values = torch.topk(logits, k)[0]
batch_mins = values[:, -1].view(-1, 1).expand_as(logits)
if probs:
return torch.where(logits < batch_mins, torch.ones_like(logits) * 0.0, logits)
return torch.where(logits < batch_mins, torch.ones_like(logits) * -BIG_CONST, logits)
def perturb_past(
past,
model,
last,
unpert_past=None,
unpert_logits=None,
accumulated_hidden=None,
grad_norms=None,
stepsize=0.01,
one_hot_bows_vectors=None,
classifier=None,
class_label=None,
loss_type=0,
num_iterations=3,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
kl_scale=0.01,
device="cuda",
):
# Generate inital perturbed past
grad_accumulator = [(np.zeros(p.shape).astype("float32")) for p in past]
if accumulated_hidden is None:
accumulated_hidden = 0
if decay:
decay_mask = torch.arange(0.0, 1.0 + SMALL_CONST, 1.0 / (window_length))[1:]
else:
decay_mask = 1.0
# TODO fix this comment (SUMANTH)
# Generate a mask is gradient perturbated is based on a past window
_, _, _, curr_length, _ = past[0].shape
if curr_length > window_length and window_length > 0:
ones_key_val_shape = tuple(past[0].shape[:-2]) + tuple([window_length]) + tuple(past[0].shape[-1:])
zeros_key_val_shape = (
tuple(past[0].shape[:-2]) + tuple([curr_length - window_length]) + tuple(past[0].shape[-1:])
)
ones_mask = torch.ones(ones_key_val_shape)
ones_mask = decay_mask * ones_mask.permute(0, 1, 2, 4, 3)
ones_mask = ones_mask.permute(0, 1, 2, 4, 3)
window_mask = torch.cat((ones_mask, torch.zeros(zeros_key_val_shape)), dim=-2).to(device)
else:
window_mask = torch.ones_like(past[0]).to(device)
# accumulate perturbations for num_iterations
loss_per_iter = []
new_accumulated_hidden = None
for i in range(num_iterations):
print("Iteration ", i + 1)
curr_perturbation = [torch.from_numpy(p_).requires_grad_(True).to(device=device) for p_ in grad_accumulator]
# make sure p_.grad is not None
for p_ in curr_perturbation:
p_.retain_grad()
# Compute hidden using perturbed past
perturbed_past = list(map(add, past, curr_perturbation))
_, _, _, curr_length, _ = curr_perturbation[0].shape
lm_output = model(last, past_key_values=perturbed_past)
all_logits, all_hidden = lm_output["logits"], lm_output["hidden_states"]
hidden = all_hidden[-1]
new_accumulated_hidden = accumulated_hidden + torch.sum(hidden, dim=1).detach()
# TODO: Check the layer-norm consistency of this with trained discriminator (Sumanth)
logits = all_logits[:, -1, :]
probs = nn.functional.softmax(logits, dim=-1)
loss = 0.0
loss_list = []
if loss_type == PPLM_BOW or loss_type == PPLM_BOW_DISCRIM:
for one_hot_bow in one_hot_bows_vectors:
bow_logits = torch.mm(probs, torch.t(one_hot_bow))
bow_loss = -torch.log(torch.sum(bow_logits))
loss += bow_loss
loss_list.append(bow_loss)
print(" pplm_bow_loss:", loss.data.cpu().numpy())
if loss_type == 2 or loss_type == 3:
ce_loss = nn.CrossEntropyLoss()
# TODO why we need to do this assignment and not just using unpert_past? (Sumanth)
curr_unpert_past = unpert_past
curr_probs = torch.unsqueeze(probs, dim=1)
wte = model.resize_token_embeddings()
for _ in range(horizon_length):
inputs_embeds = torch.matmul(curr_probs, wte.weight.data)
lm_output = model(past_key_values=curr_unpert_past, inputs_embeds=inputs_embeds)
curr_all_logits, curr_unpert_past, curr_all_hidden = (
lm_output["logits"],
lm_output["past_key_values"],
lm_output["hidden_states"],
)
curr_logits = curr_all_logits[:, -1, :]
curr_probs = nn.functional.softmax(curr_logits, dim=-1)
curr_probs = torch.unsqueeze(curr_probs, dim=1)
curr_hidden = curr_all_hidden[-1]
new_accumulated_hidden = new_accumulated_hidden + torch.sum(curr_hidden, dim=1)
prediction = classifier(new_accumulated_hidden / (curr_length + 1 + horizon_length))
label = torch.tensor(prediction.shape[0] * [class_label], device=device, dtype=torch.long)
discrim_loss = ce_loss(prediction, label)
print(" pplm_discrim_loss:", discrim_loss.data.cpu().numpy())
loss += discrim_loss
loss_list.append(discrim_loss)
kl_loss = 0.0
if kl_scale > 0.0:
unpert_probs = nn.functional.softmax(unpert_logits[:, -1, :], dim=-1)
unpert_probs = unpert_probs + SMALL_CONST * (unpert_probs <= SMALL_CONST).float().to(device).detach()
correction = SMALL_CONST * (probs <= SMALL_CONST).float().to(device).detach()
corrected_probs = probs + correction.detach()
kl_loss = kl_scale * ((corrected_probs * (corrected_probs / unpert_probs).log()).sum())
print(" kl_loss", kl_loss.data.cpu().numpy())
loss += kl_loss
loss_per_iter.append(loss.data.cpu().numpy())
print(" pplm_loss", (loss - kl_loss).data.cpu().numpy())
# compute gradients
loss.backward()
# calculate gradient norms
if grad_norms is not None and loss_type == PPLM_BOW:
grad_norms = [
torch.max(grad_norms[index], torch.norm(p_.grad * window_mask))
for index, p_ in enumerate(curr_perturbation)
]
else:
grad_norms = [
(torch.norm(p_.grad * window_mask) + SMALL_CONST) for index, p_ in enumerate(curr_perturbation)
]
# normalize gradients
grad = [
-stepsize * (p_.grad * window_mask / grad_norms[index] ** gamma).data.cpu().numpy()
for index, p_ in enumerate(curr_perturbation)
]
# accumulate gradient
grad_accumulator = list(map(add, grad, grad_accumulator))
# reset gradients, just to make sure
for p_ in curr_perturbation:
p_.grad.data.zero_()
# removing past from the graph
new_past = []
for p_ in past:
new_past.append(p_.detach())
past = new_past
# apply the accumulated perturbations to the past
grad_accumulator = [torch.from_numpy(p_).requires_grad_(True).to(device=device) for p_ in grad_accumulator]
pert_past = list(map(add, past, grad_accumulator))
return pert_past, new_accumulated_hidden, grad_norms, loss_per_iter
def get_classifier(
name: Optional[str], class_label: Union[str, int], device: str
) -> Tuple[Optional[ClassificationHead], Optional[int]]:
if name is None:
return None, None
params = DISCRIMINATOR_MODELS_PARAMS[name]
classifier = ClassificationHead(class_size=params["class_size"], embed_size=params["embed_size"]).to(device)
if "url" in params:
resolved_archive_file = cached_path(params["url"])
elif "path" in params:
resolved_archive_file = params["path"]
else:
raise ValueError("Either url or path have to be specified in the discriminator model parameters")
classifier.load_state_dict(torch.load(resolved_archive_file, map_location=device))
classifier.eval()
if isinstance(class_label, str):
if class_label in params["class_vocab"]:
label_id = params["class_vocab"][class_label]
else:
label_id = params["default_class"]
print("class_label {} not in class_vocab".format(class_label))
print("available values are: {}".format(params["class_vocab"]))
print("using default class {}".format(label_id))
elif isinstance(class_label, int):
if class_label in set(params["class_vocab"].values()):
label_id = class_label
else:
label_id = params["default_class"]
print("class_label {} not in class_vocab".format(class_label))
print("available values are: {}".format(params["class_vocab"]))
print("using default class {}".format(label_id))
else:
label_id = params["default_class"]
return classifier, label_id
def get_bag_of_words_indices(bag_of_words_ids_or_paths: List[str], tokenizer) -> List[List[List[int]]]:
bow_indices = []
for id_or_path in bag_of_words_ids_or_paths:
if id_or_path in BAG_OF_WORDS_ARCHIVE_MAP:
filepath = cached_path(BAG_OF_WORDS_ARCHIVE_MAP[id_or_path])
else:
filepath = id_or_path
with open(filepath, "r") as f:
words = f.read().strip().split("\n")
bow_indices.append([tokenizer.encode(word.strip(), add_prefix_space=True) for word in words])
return bow_indices
def build_bows_one_hot_vectors(bow_indices, tokenizer, device="cuda"):
if bow_indices is None:
return None
one_hot_bows_vectors = []
for single_bow in bow_indices:
single_bow = list(filter(lambda x: len(x) <= 1, single_bow))
single_bow = torch.tensor(single_bow).to(device)
num_words = single_bow.shape[0]
one_hot_bow = torch.zeros(num_words, tokenizer.vocab_size).to(device)
one_hot_bow.scatter_(1, single_bow, 1)
one_hot_bows_vectors.append(one_hot_bow)
return one_hot_bows_vectors
def full_text_generation(
model,
tokenizer,
context=None,
num_samples=1,
device="cuda",
bag_of_words=None,
discrim=None,
class_label=None,
length=100,
stepsize=0.02,
temperature=1.0,
top_k=10,
sample=False,
num_iterations=3,
grad_length=10000,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
gm_scale=0.9,
kl_scale=0.01,
repetition_penalty=1.0,
**kwargs
):
classifier, class_id = get_classifier(discrim, class_label, device)
bow_indices = []
if bag_of_words:
bow_indices = get_bag_of_words_indices(bag_of_words.split(";"), tokenizer)
if bag_of_words and classifier:
print("Both PPLM-BoW and PPLM-Discrim are on. This is not optimized.")
loss_type = PPLM_BOW_DISCRIM
elif bag_of_words:
loss_type = PPLM_BOW
print("Using PPLM-BoW")
elif classifier is not None:
loss_type = PPLM_DISCRIM
print("Using PPLM-Discrim")
else:
raise Exception("Specify either a bag of words or a discriminator")
unpert_gen_tok_text, _, _ = generate_text_pplm(
model=model,
tokenizer=tokenizer,
context=context,
device=device,
length=length,
sample=sample,
perturb=False,
repetition_penalty=repetition_penalty,
)
if device == "cuda":
torch.cuda.empty_cache()
pert_gen_tok_texts = []
discrim_losses = []
losses_in_time = []
for i in range(num_samples):
pert_gen_tok_text, discrim_loss, loss_in_time = generate_text_pplm(
model=model,
tokenizer=tokenizer,
context=context,
device=device,
perturb=True,
bow_indices=bow_indices,
classifier=classifier,
class_label=class_id,
loss_type=loss_type,
length=length,
stepsize=stepsize,
temperature=temperature,
top_k=top_k,
sample=sample,
num_iterations=num_iterations,
grad_length=grad_length,
horizon_length=horizon_length,
window_length=window_length,
decay=decay,
gamma=gamma,
gm_scale=gm_scale,
kl_scale=kl_scale,
repetition_penalty=repetition_penalty,
)
pert_gen_tok_texts.append(pert_gen_tok_text)
if classifier is not None:
discrim_losses.append(discrim_loss.data.cpu().numpy())
losses_in_time.append(loss_in_time)
if device == "cuda":
torch.cuda.empty_cache()
return unpert_gen_tok_text, pert_gen_tok_texts, discrim_losses, losses_in_time
def generate_text_pplm(
model,
tokenizer,
context=None,
past=None,
device="cuda",
perturb=True,
bow_indices=None,
classifier=None,
class_label=None,
loss_type=0,
length=100,
stepsize=0.02,
temperature=1.0,
top_k=10,
sample=False,
num_iterations=3,
grad_length=10000,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
gm_scale=0.9,
kl_scale=0.01,
repetition_penalty=1.0,
):
output_so_far = None
if context:
context_t = torch.tensor(context, device=device, dtype=torch.long)
while len(context_t.shape) < 2:
context_t = context_t.unsqueeze(0)
output_so_far = context_t
# collect one hot vectors for bags of words
one_hot_bows_vectors = build_bows_one_hot_vectors(bow_indices, tokenizer, device)
grad_norms = None
last = None
unpert_discrim_loss = 0
loss_in_time = []
for i in trange(length, ascii=True):
# Get past/probs for current output, except for last word
# Note that GPT takes 2 inputs: past + current_token
# run model forward to obtain unperturbed
if past is None and output_so_far is not None:
last = output_so_far[:, -1:]
if output_so_far.shape[1] > 1:
past = model(output_so_far[:, :-1])["past_key_values"]
lm_output = model(output_so_far)
unpert_logits, unpert_past, unpert_all_hidden = (
lm_output["logits"],
lm_output["past_key_values"],
lm_output["hidden_states"],
)
unpert_last_hidden = unpert_all_hidden[-1]
# check if we are abowe grad max length
if i >= grad_length:
current_stepsize = stepsize * 0
else:
current_stepsize = stepsize
# modify the past if necessary
if not perturb or num_iterations == 0:
pert_past = past
else:
accumulated_hidden = unpert_last_hidden[:, :-1, :]
accumulated_hidden = torch.sum(accumulated_hidden, dim=1)
if past is not None:
pert_past, _, grad_norms, loss_this_iter = perturb_past(
past,
model,
last,
unpert_past=unpert_past,
unpert_logits=unpert_logits,
accumulated_hidden=accumulated_hidden,
grad_norms=grad_norms,
stepsize=current_stepsize,
one_hot_bows_vectors=one_hot_bows_vectors,
classifier=classifier,
class_label=class_label,
loss_type=loss_type,
num_iterations=num_iterations,
horizon_length=horizon_length,
window_length=window_length,
decay=decay,
gamma=gamma,
kl_scale=kl_scale,
device=device,
)
loss_in_time.append(loss_this_iter)
else:
pert_past = past
lm_output = model(last, past_key_values=pert_past)
pert_logits, past = (
lm_output["logits"],
lm_output["past_key_values"],
)
pert_logits = pert_logits[:, -1, :] / temperature # + SMALL_CONST
for token_idx in set(output_so_far[0].tolist()):
if pert_logits[0, token_idx] < 0:
pert_logits[0, token_idx] *= repetition_penalty
else:
pert_logits[0, token_idx] /= repetition_penalty
pert_probs = nn.functional.softmax(pert_logits, dim=-1)
if classifier is not None:
ce_loss = nn.CrossEntropyLoss()
prediction = classifier(torch.mean(unpert_last_hidden, dim=1))
label = torch.tensor([class_label], device=device, dtype=torch.long)
unpert_discrim_loss = ce_loss(prediction, label)
print("unperturbed discrim loss", unpert_discrim_loss.data.cpu().numpy())
else:
unpert_discrim_loss = 0
# Fuse the modified model and original model
if perturb:
unpert_probs = nn.functional.softmax(unpert_logits[:, -1, :], dim=-1)
pert_probs = (pert_probs**gm_scale) * (unpert_probs ** (1 - gm_scale)) # + SMALL_CONST
pert_probs = top_k_filter(pert_probs, k=top_k, probs=True) # + SMALL_CONST
# rescale
if torch.sum(pert_probs) <= 1:
pert_probs = pert_probs / torch.sum(pert_probs)
else:
pert_logits = top_k_filter(pert_logits, k=top_k) # + SMALL_CONST
pert_probs = nn.functional.softmax(pert_logits, dim=-1)
# sample or greedy
if sample:
last = torch.multinomial(pert_probs, num_samples=1)
else:
_, last = torch.topk(pert_probs, k=1, dim=-1)
# update context/output_so_far appending the new token
output_so_far = last if output_so_far is None else torch.cat((output_so_far, last), dim=1)
print(tokenizer.decode(output_so_far.tolist()[0]))
return output_so_far, unpert_discrim_loss, loss_in_time
def set_generic_model_params(discrim_weights, discrim_meta):
if discrim_weights is None:
raise ValueError("When using a generic discriminator, discrim_weights need to be specified")
if discrim_meta is None:
raise ValueError("When using a generic discriminator, discrim_meta need to be specified")
with open(discrim_meta, "r") as discrim_meta_file:
meta = json.load(discrim_meta_file)
meta["path"] = discrim_weights
DISCRIMINATOR_MODELS_PARAMS["generic"] = meta
def run_pplm_example(
pretrained_model="gpt2-medium",
cond_text="",
uncond=False,
num_samples=1,
bag_of_words=None,
discrim=None,
discrim_weights=None,
discrim_meta=None,
class_label=-1,
length=100,
stepsize=0.02,
temperature=1.0,
top_k=10,
sample=False,
num_iterations=3,
grad_length=10000,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
gm_scale=0.9,
kl_scale=0.01,
seed=0,
no_cuda=False,
colorama=False,
repetition_penalty=1.0,
):
# set Random seed
torch.manual_seed(seed)
np.random.seed(seed)
# set the device
device = "cuda" if torch.cuda.is_available() and not no_cuda else "cpu"
if discrim == "generic":
set_generic_model_params(discrim_weights, discrim_meta)
if discrim is not None:
pretrained_model = DISCRIMINATOR_MODELS_PARAMS[discrim]["pretrained_model"]
print("discrim = {}, pretrained_model set to discriminator's = {}".format(discrim, pretrained_model))
# load pretrained model
model = GPT2LMHeadModel.from_pretrained(pretrained_model, output_hidden_states=True)
model.to(device)
model.eval()
# load tokenizer
tokenizer = GPT2Tokenizer.from_pretrained(pretrained_model)
# Freeze GPT-2 weights
for param in model.parameters():
param.requires_grad = False
# figure out conditioning text
if uncond:
tokenized_cond_text = tokenizer.encode([tokenizer.bos_token])
else:
raw_text = cond_text
while not raw_text:
print("Did you forget to add `--cond_text`? ")
raw_text = input("Model prompt >>> ")
tokenized_cond_text = tokenizer.encode(tokenizer.bos_token + raw_text)
print("= Prefix of sentence =")
print(tokenizer.decode(tokenized_cond_text))
print()
# generate unperturbed and perturbed texts
# full_text_generation returns:
# unpert_gen_tok_text, pert_gen_tok_texts, discrim_losses, losses_in_time
unpert_gen_tok_text, pert_gen_tok_texts, _, _ = full_text_generation(
model=model,
tokenizer=tokenizer,
context=tokenized_cond_text,
device=device,
num_samples=num_samples,
bag_of_words=bag_of_words,
discrim=discrim,
class_label=class_label,
length=length,
stepsize=stepsize,
temperature=temperature,
top_k=top_k,
sample=sample,
num_iterations=num_iterations,
grad_length=grad_length,
horizon_length=horizon_length,
window_length=window_length,
decay=decay,
gamma=gamma,
gm_scale=gm_scale,
kl_scale=kl_scale,
repetition_penalty=repetition_penalty,
)
# untokenize unperturbed text
unpert_gen_text = tokenizer.decode(unpert_gen_tok_text.tolist()[0])
print("=" * 80)
print("= Unperturbed generated text =")
print(unpert_gen_text)
print()
generated_texts = []
bow_word_ids = set()
if bag_of_words and colorama:
bow_indices = get_bag_of_words_indices(bag_of_words.split(";"), tokenizer)
for single_bow_list in bow_indices:
# filtering all words in the list composed of more than 1 token
filtered = list(filter(lambda x: len(x) <= 1, single_bow_list))
# w[0] because we are sure w has only 1 item because previous fitler
bow_word_ids.update(w[0] for w in filtered)
# iterate through the perturbed texts
for i, pert_gen_tok_text in enumerate(pert_gen_tok_texts):
try:
# untokenize unperturbed text
if colorama:
import colorama
pert_gen_text = ""
for word_id in pert_gen_tok_text.tolist()[0]:
if word_id in bow_word_ids:
pert_gen_text += "{}{}{}".format(
colorama.Fore.RED,
tokenizer.decode([word_id]),
colorama.Style.RESET_ALL,
)
else:
pert_gen_text += tokenizer.decode([word_id])
else:
pert_gen_text = tokenizer.decode(pert_gen_tok_text.tolist()[0])
print("= Perturbed generated text {} =".format(i + 1))
print(pert_gen_text)
print()
except Exception as exc:
print("Ignoring error while generating perturbed text:", exc)
# keep the prefix, perturbed seq, original seq for each index
generated_texts.append((tokenized_cond_text, pert_gen_tok_text, unpert_gen_tok_text))
return
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--pretrained_model",
"-M",
type=str,
default="gpt2-medium",
help="pretrained model name or path to local checkpoint",
)
parser.add_argument("--cond_text", type=str, default="The lake", help="Prefix texts to condition on")
parser.add_argument("--uncond", action="store_true", help="Generate from end-of-text as prefix")
parser.add_argument(
"--num_samples",
type=int,
default=1,
help="Number of samples to generate from the modified latents",
)
parser.add_argument(
"--bag_of_words",
"-B",
type=str,
default=None,
help=(
"Bags of words used for PPLM-BoW. "
"Either a BOW id (see list in code) or a filepath. "
"Multiple BoWs separated by ;"
),
)
parser.add_argument(
"--discrim",
"-D",
type=str,
default=None,
choices=("clickbait", "sentiment", "toxicity", "generic"),
help="Discriminator to use",
)
parser.add_argument(
"--discrim_weights",
type=str,
default=None,
help="Weights for the generic discriminator",
)
parser.add_argument(
"--discrim_meta",
type=str,
default=None,
help="Meta information for the generic discriminator",
)
parser.add_argument(
"--class_label",
type=int,
default=-1,
help="Class label used for the discriminator",
)
parser.add_argument("--length", type=int, default=100)
parser.add_argument("--stepsize", type=float, default=0.02)
parser.add_argument("--temperature", type=float, default=1.0)
parser.add_argument("--top_k", type=int, default=10)
parser.add_argument("--sample", action="store_true", help="Generate from end-of-text as prefix")
parser.add_argument("--num_iterations", type=int, default=3)
parser.add_argument("--grad_length", type=int, default=10000)
parser.add_argument(
"--window_length",
type=int,
default=0,
help="Length of past which is being optimized; 0 corresponds to infinite window length",
)
parser.add_argument(
"--horizon_length",
type=int,
default=1,
help="Length of future to optimize over",
)
parser.add_argument("--decay", action="store_true", help="whether to decay or not")
parser.add_argument("--gamma", type=float, default=1.5)
parser.add_argument("--gm_scale", type=float, default=0.9)
parser.add_argument("--kl_scale", type=float, default=0.01)
parser.add_argument("--seed", type=int, default=0)
parser.add_argument("--no_cuda", action="store_true", help="no cuda")
parser.add_argument("--colorama", action="store_true", help="colors keywords")
parser.add_argument(
"--repetition_penalty",
type=float,
default=1.0,
help="Penalize repetition. More than 1.0 -> less repetition",
)
args = parser.parse_args()
run_pplm_example(**vars(args))
| 29,044 | 34.078502 | 182 | py |
robust-transformers | robust-transformers-main/examples/research_projects/pplm/run_pplm_discrim_train.py | #! /usr/bin/env python3
# coding=utf-8
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import csv
import json
import math
import time
import numpy as np
import torch
import torch.optim as optim
import torch.utils.data as data
from nltk.tokenize.treebank import TreebankWordDetokenizer
from torch import nn
from torchtext import data as torchtext_data
from torchtext import datasets
from tqdm import tqdm, trange
from pplm_classification_head import ClassificationHead
from transformers import GPT2LMHeadModel, GPT2Tokenizer
torch.manual_seed(0)
np.random.seed(0)
EPSILON = 1e-10
example_sentence = "This is incredible! I love it, this is the best chicken I have ever had."
max_length_seq = 100
class Discriminator(nn.Module):
"""Transformer encoder followed by a Classification Head"""
def __init__(self, class_size, pretrained_model="gpt2-medium", cached_mode=False, device="cpu"):
super().__init__()
self.tokenizer = GPT2Tokenizer.from_pretrained(pretrained_model)
self.encoder = GPT2LMHeadModel.from_pretrained(pretrained_model)
self.embed_size = self.encoder.transformer.config.hidden_size
self.classifier_head = ClassificationHead(class_size=class_size, embed_size=self.embed_size)
self.cached_mode = cached_mode
self.device = device
def get_classifier(self):
return self.classifier_head
def train_custom(self):
for param in self.encoder.parameters():
param.requires_grad = False
self.classifier_head.train()
def avg_representation(self, x):
mask = x.ne(0).unsqueeze(2).repeat(1, 1, self.embed_size).float().to(self.device).detach()
hidden = self.encoder.transformer(x)["last_hidden_state"]
masked_hidden = hidden * mask
avg_hidden = torch.sum(masked_hidden, dim=1) / (torch.sum(mask, dim=1).detach() + EPSILON)
return avg_hidden
def forward(self, x):
if self.cached_mode:
avg_hidden = x.to(self.device)
else:
avg_hidden = self.avg_representation(x.to(self.device))
logits = self.classifier_head(avg_hidden)
probs = nn.functional.log_softmax(logits, dim=-1)
return probs
class Dataset(data.Dataset):
def __init__(self, X, y):
"""Reads source and target sequences from txt files."""
self.X = X
self.y = y
def __len__(self):
return len(self.X)
def __getitem__(self, index):
"""Returns one data pair (source and target)."""
data = {}
data["X"] = self.X[index]
data["y"] = self.y[index]
return data
def collate_fn(data):
def pad_sequences(sequences):
lengths = [len(seq) for seq in sequences]
padded_sequences = torch.zeros(len(sequences), max(lengths)).long() # padding value = 0
for i, seq in enumerate(sequences):
end = lengths[i]
padded_sequences[i, :end] = seq[:end]
return padded_sequences, lengths
item_info = {}
for key in data[0].keys():
item_info[key] = [d[key] for d in data]
x_batch, _ = pad_sequences(item_info["X"])
y_batch = torch.tensor(item_info["y"], dtype=torch.long)
return x_batch, y_batch
def cached_collate_fn(data):
item_info = {}
for key in data[0].keys():
item_info[key] = [d[key] for d in data]
x_batch = torch.cat(item_info["X"], 0)
y_batch = torch.tensor(item_info["y"], dtype=torch.long)
return x_batch, y_batch
def train_epoch(data_loader, discriminator, optimizer, epoch=0, log_interval=10, device="cpu"):
samples_so_far = 0
discriminator.train_custom()
for batch_idx, (input_t, target_t) in enumerate(data_loader):
input_t, target_t = input_t.to(device), target_t.to(device)
optimizer.zero_grad()
output_t = discriminator(input_t)
loss = nn.functional.nll_loss(output_t, target_t)
loss.backward(retain_graph=True)
optimizer.step()
samples_so_far += len(input_t)
if batch_idx % log_interval == 0:
print(
"Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}".format(
epoch + 1,
samples_so_far,
len(data_loader.dataset),
100 * samples_so_far / len(data_loader.dataset),
loss.item(),
)
)
def evaluate_performance(data_loader, discriminator, device="cpu"):
discriminator.eval()
test_loss = 0
correct = 0
with torch.no_grad():
for input_t, target_t in data_loader:
input_t, target_t = input_t.to(device), target_t.to(device)
output_t = discriminator(input_t)
# sum up batch loss
test_loss += nn.functional.nll_loss(output_t, target_t, reduction="sum").item()
# get the index of the max log-probability
pred_t = output_t.argmax(dim=1, keepdim=True)
correct += pred_t.eq(target_t.view_as(pred_t)).sum().item()
test_loss /= len(data_loader.dataset)
print(
"Performance on test set: "
"Average loss: {:.4f}, Accuracy: {}/{} ({:.0f}%)".format(
test_loss, correct, len(data_loader.dataset), 100.0 * correct / len(data_loader.dataset)
)
)
def predict(input_sentence, model, classes, cached=False, device="cpu"):
input_t = model.tokenizer.encode(input_sentence)
input_t = torch.tensor([input_t], dtype=torch.long, device=device)
if cached:
input_t = model.avg_representation(input_t)
log_probs = model(input_t).data.cpu().numpy().flatten().tolist()
print("Input sentence:", input_sentence)
print(
"Predictions:",
", ".join("{}: {:.4f}".format(c, math.exp(log_prob)) for c, log_prob in zip(classes, log_probs)),
)
def get_cached_data_loader(dataset, batch_size, discriminator, shuffle=False, device="cpu"):
data_loader = torch.utils.data.DataLoader(dataset=dataset, batch_size=batch_size, collate_fn=collate_fn)
xs = []
ys = []
for batch_idx, (x, y) in enumerate(tqdm(data_loader, ascii=True)):
with torch.no_grad():
x = x.to(device)
avg_rep = discriminator.avg_representation(x).cpu().detach()
avg_rep_list = torch.unbind(avg_rep.unsqueeze(1))
xs += avg_rep_list
ys += y.cpu().numpy().tolist()
data_loader = torch.utils.data.DataLoader(
dataset=Dataset(xs, ys), batch_size=batch_size, shuffle=shuffle, collate_fn=cached_collate_fn
)
return data_loader
def train_discriminator(
dataset,
dataset_fp=None,
pretrained_model="gpt2-medium",
epochs=10,
batch_size=64,
log_interval=10,
save_model=False,
cached=False,
no_cuda=False,
):
device = "cuda" if torch.cuda.is_available() and not no_cuda else "cpu"
print("Preprocessing {} dataset...".format(dataset))
start = time.time()
if dataset == "SST":
idx2class = ["positive", "negative", "very positive", "very negative", "neutral"]
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
text = torchtext_data.Field()
label = torchtext_data.Field(sequential=False)
train_data, val_data, test_data = datasets.SST.splits(
text,
label,
fine_grained=True,
train_subtrees=True,
)
x = []
y = []
for i in trange(len(train_data), ascii=True):
seq = TreebankWordDetokenizer().detokenize(vars(train_data[i])["text"])
seq = discriminator.tokenizer.encode(seq)
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
x.append(seq)
y.append(class2idx[vars(train_data[i])["label"]])
train_dataset = Dataset(x, y)
test_x = []
test_y = []
for i in trange(len(test_data), ascii=True):
seq = TreebankWordDetokenizer().detokenize(vars(test_data[i])["text"])
seq = discriminator.tokenizer.encode(seq)
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
test_x.append(seq)
test_y.append(class2idx[vars(test_data[i])["label"]])
test_dataset = Dataset(test_x, test_y)
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 2,
}
elif dataset == "clickbait":
idx2class = ["non_clickbait", "clickbait"]
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
with open("datasets/clickbait/clickbait_train_prefix.txt") as f:
data = []
for i, line in enumerate(f):
try:
data.append(eval(line))
except Exception:
print("Error evaluating line {}: {}".format(i, line))
continue
x = []
y = []
with open("datasets/clickbait/clickbait_train_prefix.txt") as f:
for i, line in enumerate(tqdm(f, ascii=True)):
try:
d = eval(line)
seq = discriminator.tokenizer.encode(d["text"])
if len(seq) < max_length_seq:
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
else:
print("Line {} is longer than maximum length {}".format(i, max_length_seq))
continue
x.append(seq)
y.append(d["label"])
except Exception:
print("Error evaluating / tokenizing" " line {}, skipping it".format(i))
pass
full_dataset = Dataset(x, y)
train_size = int(0.9 * len(full_dataset))
test_size = len(full_dataset) - train_size
train_dataset, test_dataset = torch.utils.data.random_split(full_dataset, [train_size, test_size])
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 1,
}
elif dataset == "toxic":
idx2class = ["non_toxic", "toxic"]
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
x = []
y = []
with open("datasets/toxic/toxic_train.txt") as f:
for i, line in enumerate(tqdm(f, ascii=True)):
try:
d = eval(line)
seq = discriminator.tokenizer.encode(d["text"])
if len(seq) < max_length_seq:
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
else:
print("Line {} is longer than maximum length {}".format(i, max_length_seq))
continue
x.append(seq)
y.append(int(np.sum(d["label"]) > 0))
except Exception:
print("Error evaluating / tokenizing" " line {}, skipping it".format(i))
pass
full_dataset = Dataset(x, y)
train_size = int(0.9 * len(full_dataset))
test_size = len(full_dataset) - train_size
train_dataset, test_dataset = torch.utils.data.random_split(full_dataset, [train_size, test_size])
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 0,
}
else: # if dataset == "generic":
# This assumes the input dataset is a TSV with the following structure:
# class \t text
if dataset_fp is None:
raise ValueError("When generic dataset is selected, " "dataset_fp needs to be specified aswell.")
classes = set()
with open(dataset_fp) as f:
csv_reader = csv.reader(f, delimiter="\t")
for row in tqdm(csv_reader, ascii=True):
if row:
classes.add(row[0])
idx2class = sorted(classes)
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
x = []
y = []
with open(dataset_fp) as f:
csv_reader = csv.reader(f, delimiter="\t")
for i, row in enumerate(tqdm(csv_reader, ascii=True)):
if row:
label = row[0]
text = row[1]
try:
seq = discriminator.tokenizer.encode(text)
if len(seq) < max_length_seq:
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
else:
print("Line {} is longer than maximum length {}".format(i, max_length_seq))
continue
x.append(seq)
y.append(class2idx[label])
except Exception:
print("Error tokenizing line {}, skipping it".format(i))
pass
full_dataset = Dataset(x, y)
train_size = int(0.9 * len(full_dataset))
test_size = len(full_dataset) - train_size
train_dataset, test_dataset = torch.utils.data.random_split(full_dataset, [train_size, test_size])
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 0,
}
end = time.time()
print("Preprocessed {} data points".format(len(train_dataset) + len(test_dataset)))
print("Data preprocessing took: {:.3f}s".format(end - start))
if cached:
print("Building representation cache...")
start = time.time()
train_loader = get_cached_data_loader(train_dataset, batch_size, discriminator, shuffle=True, device=device)
test_loader = get_cached_data_loader(test_dataset, batch_size, discriminator, device=device)
end = time.time()
print("Building representation cache took: {:.3f}s".format(end - start))
else:
train_loader = torch.utils.data.DataLoader(
dataset=train_dataset, batch_size=batch_size, shuffle=True, collate_fn=collate_fn
)
test_loader = torch.utils.data.DataLoader(dataset=test_dataset, batch_size=batch_size, collate_fn=collate_fn)
if save_model:
with open("{}_classifier_head_meta.json".format(dataset), "w") as meta_file:
json.dump(discriminator_meta, meta_file)
optimizer = optim.Adam(discriminator.parameters(), lr=0.0001)
for epoch in range(epochs):
start = time.time()
print("\nEpoch", epoch + 1)
train_epoch(
discriminator=discriminator,
data_loader=train_loader,
optimizer=optimizer,
epoch=epoch,
log_interval=log_interval,
device=device,
)
evaluate_performance(data_loader=test_loader, discriminator=discriminator, device=device)
end = time.time()
print("Epoch took: {:.3f}s".format(end - start))
print("\nExample prediction")
predict(example_sentence, discriminator, idx2class, cached=cached, device=device)
if save_model:
# torch.save(discriminator.state_dict(),
# "{}_discriminator_{}.pt".format(
# args.dataset, epoch + 1
# ))
torch.save(
discriminator.get_classifier().state_dict(),
"{}_classifier_head_epoch_{}.pt".format(dataset, epoch + 1),
)
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Train a discriminator on top of GPT-2 representations")
parser.add_argument(
"--dataset",
type=str,
default="SST",
choices=("SST", "clickbait", "toxic", "generic"),
help="dataset to train the discriminator on."
"In case of generic, the dataset is expected"
"to be a TSBV file with structure: class \\t text",
)
parser.add_argument(
"--dataset_fp",
type=str,
default="",
help="File path of the dataset to use. " "Needed only in case of generic datadset",
)
parser.add_argument(
"--pretrained_model", type=str, default="gpt2-medium", help="Pretrained model to use as encoder"
)
parser.add_argument("--epochs", type=int, default=10, metavar="N", help="Number of training epochs")
parser.add_argument(
"--batch_size", type=int, default=64, metavar="N", help="input batch size for training (default: 64)"
)
parser.add_argument(
"--log_interval",
type=int,
default=10,
metavar="N",
help="how many batches to wait before logging training status",
)
parser.add_argument("--save_model", action="store_true", help="whether to save the model")
parser.add_argument("--cached", action="store_true", help="whether to cache the input representations")
parser.add_argument("--no_cuda", action="store_true", help="use to turn off cuda")
args = parser.parse_args()
train_discriminator(**(vars(args)))
| 18,788 | 34.92543 | 117 | py |
robust-transformers | robust-transformers-main/examples/research_projects/pplm/pplm_classification_head.py | from torch import nn
class ClassificationHead(nn.Module):
"""Classification Head for transformer encoders"""
def __init__(self, class_size, embed_size):
super().__init__()
self.class_size = class_size
self.embed_size = embed_size
# self.mlp1 = nn.Linear(embed_size, embed_size)
# self.mlp2 = (nn.Linear(embed_size, class_size))
self.mlp = nn.Linear(embed_size, class_size)
def forward(self, hidden_state):
# hidden_state = nn.functional.relu(self.mlp1(hidden_state))
# hidden_state = self.mlp2(hidden_state)
logits = self.mlp(hidden_state)
return logits
| 651 | 31.6 | 68 | py |
robust-transformers | robust-transformers-main/examples/research_projects/deebert/test_glue_deebert.py | import argparse
import logging
import sys
from unittest.mock import patch
import run_glue_deebert
from transformers.testing_utils import TestCasePlus, get_gpu_count, require_torch_non_multi_gpu, slow
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse.ArgumentParser()
parser.add_argument("-f")
args = parser.parse_args()
return args.f
class DeeBertTests(TestCasePlus):
def setup(self) -> None:
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
def run_and_check(self, args):
n_gpu = get_gpu_count()
if n_gpu > 1:
pass
# XXX: doesn't quite work with n_gpu > 1 https://github.com/huggingface/transformers/issues/10560
# script = f"{self.examples_dir_str}/research_projects/deebert/run_glue_deebert.py"
# distributed_args = f"-m torch.distributed.launch --nproc_per_node={n_gpu} {script}".split()
# cmd = [sys.executable] + distributed_args + args
# execute_subprocess_async(cmd, env=self.get_env())
# XXX: test the results - need to save them first into .json file
else:
args.insert(0, "run_glue_deebert.py")
with patch.object(sys, "argv", args):
result = run_glue_deebert.main()
for value in result.values():
self.assertGreaterEqual(value, 0.666)
@slow
@require_torch_non_multi_gpu
def test_glue_deebert_train(self):
train_args = """
--model_type roberta
--model_name_or_path roberta-base
--task_name MRPC
--do_train
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--max_seq_length 128
--per_gpu_eval_batch_size=1
--per_gpu_train_batch_size=8
--learning_rate 2e-4
--num_train_epochs 3
--overwrite_output_dir
--seed 42
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--save_steps 0
--overwrite_cache
--eval_after_first_stage
""".split()
self.run_and_check(train_args)
eval_args = """
--model_type roberta
--model_name_or_path ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--task_name MRPC
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--max_seq_length 128
--eval_each_highway
--eval_highway
--overwrite_cache
--per_gpu_eval_batch_size=1
""".split()
self.run_and_check(eval_args)
entropy_eval_args = """
--model_type roberta
--model_name_or_path ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--task_name MRPC
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--max_seq_length 128
--early_exit_entropy 0.1
--eval_highway
--overwrite_cache
--per_gpu_eval_batch_size=1
""".split()
self.run_and_check(entropy_eval_args)
| 3,690 | 34.152381 | 109 | py |
robust-transformers | robust-transformers-main/examples/research_projects/deebert/run_glue_deebert.py | from __future__ import absolute_import, division, print_function
import argparse
import glob
import logging
import os
import random
import time
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from src.modeling_highway_bert import DeeBertForSequenceClassification
from src.modeling_highway_roberta import DeeRobertaForSequenceClassification
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertTokenizer,
RobertaConfig,
RobertaTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, DeeBertForSequenceClassification, BertTokenizer),
"roberta": (RobertaConfig, DeeRobertaForSequenceClassification, RobertaTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def get_wanted_result(result):
if "spearmanr" in result:
print_result = result["spearmanr"]
elif "f1" in result:
print_result = result["f1"]
elif "mcc" in result:
print_result = result["mcc"]
elif "acc" in result:
print_result = result["acc"]
else:
raise ValueError("Primary metric unclear in the results")
return print_result
def train(args, train_dataset, model, tokenizer, train_highway=False):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
if train_highway:
optimizer_grouped_parameters = [
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" in n) and (not any(nd in n for nd in no_decay))
],
"weight_decay": args.weight_decay,
},
{
"params": [
p for n, p in model.named_parameters() if ("highway" in n) and (any(nd in n for nd in no_decay))
],
"weight_decay": 0.0,
},
]
else:
optimizer_grouped_parameters = [
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" not in n) and (not any(nd in n for nd in no_decay))
],
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" not in n) and (any(nd in n for nd in no_decay))
],
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0])
set_seed(args) # Added here for reproductibility (even between python 2 and 3)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "xlnet"] else None
) # XLM, DistilBERT and RoBERTa don't use segment_ids
inputs["train_highway"] = train_highway
outputs = model(**inputs)
loss = outputs[0] # model outputs are always tuple in transformers (see doc)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Log metrics
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
tb_writer.add_scalar("lr", scheduler.get_lr()[0], global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
logging_loss = tr_loss
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix="", output_layer=-1, eval_highway=False):
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "-MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset) if args.local_rank == -1 else DistributedSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
exit_layer_counter = {(i + 1): 0 for i in range(model.num_layers)}
st = time.time()
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "xlnet"] else None
) # XLM, DistilBERT and RoBERTa don't use segment_ids
if output_layer >= 0:
inputs["output_layer"] = output_layer
outputs = model(**inputs)
if eval_highway:
exit_layer_counter[outputs[-1]] += 1
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_time = time.time() - st
logger.info("Eval time: {}".format(eval_time))
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
if eval_highway:
logger.info("Exit layer counter: {}".format(exit_layer_counter))
actual_cost = sum([l * c for l, c in exit_layer_counter.items()])
full_cost = len(eval_dataloader) * model.num_layers
logger.info("Expected saving: {}".format(actual_cost / full_cost))
if args.early_exit_entropy >= 0:
save_fname = (
args.plot_data_dir
+ "/"
+ args.model_name_or_path[2:]
+ "/entropy_{}.npy".format(args.early_exit_entropy)
)
if not os.path.exists(os.path.dirname(save_fname)):
os.makedirs(os.path.dirname(save_fname))
print_result = get_wanted_result(result)
np.save(save_fname, np.array([exit_layer_counter, eval_time, actual_cost / full_cost, print_result]))
logger.info("Entropy={}\tResult={:.2f}".format(args.early_exit_entropy, 100 * print_result))
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
label_list=label_list,
max_length=args.max_seq_length,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
if features[0].token_type_ids is None:
# For RoBERTa (a potential bug!)
all_token_type_ids = torch.tensor([[0] * args.max_seq_length for f in features], dtype=torch.long)
else:
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pre-trained model or shortcut name.",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--plot_data_dir",
default="./plotting/",
type=str,
required=False,
help="The directory to store data for plotting figures.",
)
# Other parameters
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Rul evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--eval_each_highway", action="store_true", help="Set this flag to evaluate each highway.")
parser.add_argument(
"--eval_after_first_stage",
action="store_true",
help="Set this flag to evaluate after training only bert (not highway).",
)
parser.add_argument("--eval_highway", action="store_true", help="Set this flag if it's evaluating highway models")
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight deay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--early_exit_entropy", default=-1, type=float, help="Entropy threshold for early exit.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help="For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html",
)
parser.add_argument("--local_rank", type=int, default=-1, help="For distributed training: local_rank")
parser.add_argument("--server_ip", type=str, default="", help="For distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="For distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.model_type == "bert":
model.bert.encoder.set_early_exit_entropy(args.early_exit_entropy)
model.bert.init_highway_pooler()
elif args.model_type == "roberta":
model.roberta.encoder.set_early_exit_entropy(args.early_exit_entropy)
model.roberta.init_highway_pooler()
else:
raise NotImplementedError()
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
if args.eval_after_first_stage:
result = evaluate(args, model, tokenizer, prefix="")
print_result = get_wanted_result(result)
train(args, train_dataset, model, tokenizer, train_highway=True)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
# Create output directory if needed
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = list(
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
if args.model_type == "bert":
model.bert.encoder.set_early_exit_entropy(args.early_exit_entropy)
elif args.model_type == "roberta":
model.roberta.encoder.set_early_exit_entropy(args.early_exit_entropy)
else:
raise NotImplementedError()
model.to(args.device)
result = evaluate(args, model, tokenizer, prefix=prefix, eval_highway=args.eval_highway)
print_result = get_wanted_result(result)
logger.info("Result: {}".format(print_result))
if args.eval_each_highway:
last_layer_results = print_result
each_layer_results = []
for i in range(model.num_layers):
logger.info("\n")
_result = evaluate(
args, model, tokenizer, prefix=prefix, output_layer=i, eval_highway=args.eval_highway
)
if i + 1 < model.num_layers:
each_layer_results.append(get_wanted_result(_result))
each_layer_results.append(last_layer_results)
save_fname = args.plot_data_dir + "/" + args.model_name_or_path[2:] + "/each_layer.npy"
if not os.path.exists(os.path.dirname(save_fname)):
os.makedirs(os.path.dirname(save_fname))
np.save(save_fname, np.array(each_layer_results))
info_str = "Score of each layer:"
for i in range(model.num_layers):
info_str += " {:.2f}".format(100 * each_layer_results[i])
logger.info(info_str)
result = dict((k + "_{}".format(global_step), v) for k, v in result.items())
results.update(result)
return results
if __name__ == "__main__":
main()
| 31,693 | 42.297814 | 150 | py |
robust-transformers | robust-transformers-main/examples/research_projects/deebert/src/modeling_highway_bert.py | import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.bert.modeling_bert import (
BERT_INPUTS_DOCSTRING,
BERT_START_DOCSTRING,
BertEmbeddings,
BertLayer,
BertPooler,
BertPreTrainedModel,
)
def entropy(x):
"""Calculate entropy of a pre-softmax logit Tensor"""
exp_x = torch.exp(x)
A = torch.sum(exp_x, dim=1) # sum of exp(x_i)
B = torch.sum(x * exp_x, dim=1) # sum of x_i * exp(x_i)
return torch.log(A) - B / A
class DeeBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.layer = nn.ModuleList([BertLayer(config) for _ in range(config.num_hidden_layers)])
self.highway = nn.ModuleList([BertHighway(config) for _ in range(config.num_hidden_layers)])
self.early_exit_entropy = [-1 for _ in range(config.num_hidden_layers)]
def set_early_exit_entropy(self, x):
if (type(x) is float) or (type(x) is int):
for i in range(len(self.early_exit_entropy)):
self.early_exit_entropy[i] = x
else:
self.early_exit_entropy = x
def init_highway_pooler(self, pooler):
loaded_model = pooler.state_dict()
for highway in self.highway:
for name, param in highway.pooler.state_dict().items():
param.copy_(loaded_model[name])
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
):
all_hidden_states = ()
all_attentions = ()
all_highway_exits = ()
for i, layer_module in enumerate(self.layer):
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states, attention_mask, head_mask[i], encoder_hidden_states, encoder_attention_mask
)
hidden_states = layer_outputs[0]
if self.output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
current_outputs = (hidden_states,)
if self.output_hidden_states:
current_outputs = current_outputs + (all_hidden_states,)
if self.output_attentions:
current_outputs = current_outputs + (all_attentions,)
highway_exit = self.highway[i](current_outputs)
# logits, pooled_output
if not self.training:
highway_logits = highway_exit[0]
highway_entropy = entropy(highway_logits)
highway_exit = highway_exit + (highway_entropy,) # logits, hidden_states(?), entropy
all_highway_exits = all_highway_exits + (highway_exit,)
if highway_entropy < self.early_exit_entropy[i]:
new_output = (highway_logits,) + current_outputs[1:] + (all_highway_exits,)
raise HighwayException(new_output, i + 1)
else:
all_highway_exits = all_highway_exits + (highway_exit,)
# Add last layer
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = (hidden_states,)
if self.output_hidden_states:
outputs = outputs + (all_hidden_states,)
if self.output_attentions:
outputs = outputs + (all_attentions,)
outputs = outputs + (all_highway_exits,)
return outputs # last-layer hidden state, (all hidden states), (all attentions), all highway exits
@add_start_docstrings(
"The Bert Model transformer with early exiting (DeeBERT). ",
BERT_START_DOCSTRING,
)
class DeeBertModel(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = BertEmbeddings(config)
self.encoder = DeeBertEncoder(config)
self.pooler = BertPooler(config)
self.init_weights()
def init_highway_pooler(self):
self.encoder.init_highway_pooler(self.pooler)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""Prunes heads of the model.
heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
See base class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if encoder_attention_mask.dim() == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if encoder_attention_mask.dim() == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
encoder_extended_attention_mask = encoder_extended_attention_mask.to(
dtype=next(self.parameters()).dtype
) # fp16 compatibility
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output)
outputs = (sequence_output, pooled_output,) + encoder_outputs[
1:
] # add hidden_states and attentions if they are here
return outputs # sequence_output, pooled_output, (hidden_states), (attentions), highway exits
class HighwayException(Exception):
def __init__(self, message, exit_layer):
self.message = message
self.exit_layer = exit_layer # start from 1!
class BertHighway(nn.Module):
"""A module to provide a shortcut
from (the output of one non-final BertLayer in BertEncoder) to (cross-entropy computation in BertForSequenceClassification)
"""
def __init__(self, config):
super().__init__()
self.pooler = BertPooler(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, encoder_outputs):
# Pooler
pooler_input = encoder_outputs[0]
pooler_output = self.pooler(pooler_input)
# "return" pooler_output
# BertModel
bmodel_output = (pooler_input, pooler_output) + encoder_outputs[1:]
# "return" bmodel_output
# Dropout and classification
pooled_output = bmodel_output[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
return logits, pooled_output
@add_start_docstrings(
"""Bert Model (with early exiting - DeeBERT) with a classifier on top,
also takes care of multi-layer training. """,
BERT_START_DOCSTRING,
)
class DeeBertForSequenceClassification(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.num_layers = config.num_hidden_layers
self.bert = DeeBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_layer=-1,
train_highway=False,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
exit_layer = self.num_layers
try:
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
)
# sequence_output, pooled_output, (hidden_states), (attentions), highway exits
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
except HighwayException as e:
outputs = e.message
exit_layer = e.exit_layer
logits = outputs[0]
if not self.training:
original_entropy = entropy(logits)
highway_entropy = []
highway_logits_all = []
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
# work with highway exits
highway_losses = []
for highway_exit in outputs[-1]:
highway_logits = highway_exit[0]
if not self.training:
highway_logits_all.append(highway_logits)
highway_entropy.append(highway_exit[2])
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
highway_loss = loss_fct(highway_logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
highway_loss = loss_fct(highway_logits.view(-1, self.num_labels), labels.view(-1))
highway_losses.append(highway_loss)
if train_highway:
outputs = (sum(highway_losses[:-1]),) + outputs
# exclude the final highway, of course
else:
outputs = (loss,) + outputs
if not self.training:
outputs = outputs + ((original_entropy, highway_entropy), exit_layer)
if output_layer >= 0:
outputs = (
(outputs[0],) + (highway_logits_all[output_layer],) + outputs[2:]
) # use the highway of the last layer
return outputs # (loss), logits, (hidden_states), (attentions), (highway_exits)
| 17,668 | 43.506297 | 172 | py |
robust-transformers | robust-transformers-main/examples/research_projects/deebert/src/__init__.py | 0 | 0 | 0 | py | |
robust-transformers | robust-transformers-main/examples/research_projects/deebert/src/modeling_highway_roberta.py | from __future__ import absolute_import, division, print_function, unicode_literals
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers import RobertaConfig
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.roberta.modeling_roberta import (
ROBERTA_INPUTS_DOCSTRING,
ROBERTA_START_DOCSTRING,
RobertaEmbeddings,
)
from .modeling_highway_bert import BertPreTrainedModel, DeeBertModel, HighwayException, entropy
@add_start_docstrings(
"The RoBERTa Model transformer with early exiting (DeeRoBERTa). ",
ROBERTA_START_DOCSTRING,
)
class DeeRobertaModel(DeeBertModel):
config_class = RobertaConfig
base_model_prefix = "roberta"
def __init__(self, config):
super().__init__(config)
self.embeddings = RobertaEmbeddings(config)
self.init_weights()
@add_start_docstrings(
"""RoBERTa Model (with early exiting - DeeRoBERTa) with a classifier on top,
also takes care of multi-layer training. """,
ROBERTA_START_DOCSTRING,
)
class DeeRobertaForSequenceClassification(BertPreTrainedModel):
config_class = RobertaConfig
base_model_prefix = "roberta"
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.num_layers = config.num_hidden_layers
self.roberta = DeeRobertaModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
@add_start_docstrings_to_model_forward(ROBERTA_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_layer=-1,
train_highway=False,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.RobertaConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
exit_layer = self.num_layers
try:
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
except HighwayException as e:
outputs = e.message
exit_layer = e.exit_layer
logits = outputs[0]
if not self.training:
original_entropy = entropy(logits)
highway_entropy = []
highway_logits_all = []
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
# work with highway exits
highway_losses = []
for highway_exit in outputs[-1]:
highway_logits = highway_exit[0]
if not self.training:
highway_logits_all.append(highway_logits)
highway_entropy.append(highway_exit[2])
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
highway_loss = loss_fct(highway_logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
highway_loss = loss_fct(highway_logits.view(-1, self.num_labels), labels.view(-1))
highway_losses.append(highway_loss)
if train_highway:
outputs = (sum(highway_losses[:-1]),) + outputs
# exclude the final highway, of course
else:
outputs = (loss,) + outputs
if not self.training:
outputs = outputs + ((original_entropy, highway_entropy), exit_layer)
if output_layer >= 0:
outputs = (
(outputs[0],) + (highway_logits_all[output_layer],) + outputs[2:]
) # use the highway of the last layer
return outputs # (loss), logits, (hidden_states), (attentions), entropy
| 6,791 | 42.261146 | 172 | py |
robust-transformers | robust-transformers-main/examples/research_projects/lxmert/modeling_frcnn.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2 && Huggingface Co.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import itertools
import math
import os
from abc import ABCMeta, abstractmethod
from collections import OrderedDict, namedtuple
from typing import Dict, List, Tuple
import numpy as np
import torch
from torch import nn
from torch.nn.modules.batchnorm import BatchNorm2d
from torchvision.ops import RoIPool
from torchvision.ops.boxes import batched_nms, nms
from utils import WEIGHTS_NAME, Config, cached_path, hf_bucket_url, is_remote_url, load_checkpoint
# other:
def norm_box(boxes, raw_sizes):
if not isinstance(boxes, torch.Tensor):
normalized_boxes = boxes.copy()
else:
normalized_boxes = boxes.clone()
normalized_boxes[:, :, (0, 2)] /= raw_sizes[:, 1]
normalized_boxes[:, :, (1, 3)] /= raw_sizes[:, 0]
return normalized_boxes
def pad_list_tensors(
list_tensors,
preds_per_image,
max_detections=None,
return_tensors=None,
padding=None,
pad_value=0,
location=None,
):
"""
location will always be cpu for np tensors
"""
if location is None:
location = "cpu"
assert return_tensors in {"pt", "np", None}
assert padding in {"max_detections", "max_batch", None}
new = []
if padding is None:
if return_tensors is None:
return list_tensors
elif return_tensors == "pt":
if not isinstance(list_tensors, torch.Tensor):
return torch.stack(list_tensors).to(location)
else:
return list_tensors.to(location)
else:
if not isinstance(list_tensors, list):
return np.array(list_tensors.to(location))
else:
return list_tensors.to(location)
if padding == "max_detections":
assert max_detections is not None, "specify max number of detections per batch"
elif padding == "max_batch":
max_detections = max(preds_per_image)
for i in range(len(list_tensors)):
too_small = False
tensor_i = list_tensors.pop(0)
if tensor_i.ndim < 2:
too_small = True
tensor_i = tensor_i.unsqueeze(-1)
assert isinstance(tensor_i, torch.Tensor)
tensor_i = nn.functional.pad(
input=tensor_i,
pad=(0, 0, 0, max_detections - preds_per_image[i]),
mode="constant",
value=pad_value,
)
if too_small:
tensor_i = tensor_i.squeeze(-1)
if return_tensors is None:
if location == "cpu":
tensor_i = tensor_i.cpu()
tensor_i = tensor_i.tolist()
if return_tensors == "np":
if location == "cpu":
tensor_i = tensor_i.cpu()
tensor_i = tensor_i.numpy()
else:
if location == "cpu":
tensor_i = tensor_i.cpu()
new.append(tensor_i)
if return_tensors == "np":
return np.stack(new, axis=0)
elif return_tensors == "pt" and not isinstance(new, torch.Tensor):
return torch.stack(new, dim=0)
else:
return list_tensors
def do_nms(boxes, scores, image_shape, score_thresh, nms_thresh, mind, maxd):
scores = scores[:, :-1]
num_bbox_reg_classes = boxes.shape[1] // 4
# Convert to Boxes to use the `clip` function ...
boxes = boxes.reshape(-1, 4)
_clip_box(boxes, image_shape)
boxes = boxes.view(-1, num_bbox_reg_classes, 4) # R x C x 4
# Select max scores
max_scores, max_classes = scores.max(1) # R x C --> R
num_objs = boxes.size(0)
boxes = boxes.view(-1, 4)
idxs = torch.arange(num_objs).to(boxes.device) * num_bbox_reg_classes + max_classes
max_boxes = boxes[idxs] # Select max boxes according to the max scores.
# Apply NMS
keep = nms(max_boxes, max_scores, nms_thresh)
keep = keep[:maxd]
if keep.shape[-1] >= mind and keep.shape[-1] <= maxd:
max_boxes, max_scores = max_boxes[keep], max_scores[keep]
classes = max_classes[keep]
return max_boxes, max_scores, classes, keep
else:
return None
# Helper Functions
def _clip_box(tensor, box_size: Tuple[int, int]):
assert torch.isfinite(tensor).all(), "Box tensor contains infinite or NaN!"
h, w = box_size
tensor[:, 0].clamp_(min=0, max=w)
tensor[:, 1].clamp_(min=0, max=h)
tensor[:, 2].clamp_(min=0, max=w)
tensor[:, 3].clamp_(min=0, max=h)
def _nonempty_boxes(box, threshold: float = 0.0) -> torch.Tensor:
widths = box[:, 2] - box[:, 0]
heights = box[:, 3] - box[:, 1]
keep = (widths > threshold) & (heights > threshold)
return keep
def get_norm(norm, out_channels):
if isinstance(norm, str):
if len(norm) == 0:
return None
norm = {
"BN": BatchNorm2d,
"GN": lambda channels: nn.GroupNorm(32, channels),
"nnSyncBN": nn.SyncBatchNorm, # keep for debugging
"": lambda x: x,
}[norm]
return norm(out_channels)
def _create_grid_offsets(size: List[int], stride: int, offset: float, device):
grid_height, grid_width = size
shifts_x = torch.arange(
offset * stride,
grid_width * stride,
step=stride,
dtype=torch.float32,
device=device,
)
shifts_y = torch.arange(
offset * stride,
grid_height * stride,
step=stride,
dtype=torch.float32,
device=device,
)
shift_y, shift_x = torch.meshgrid(shifts_y, shifts_x)
shift_x = shift_x.reshape(-1)
shift_y = shift_y.reshape(-1)
return shift_x, shift_y
def build_backbone(cfg):
input_shape = ShapeSpec(channels=len(cfg.MODEL.PIXEL_MEAN))
norm = cfg.RESNETS.NORM
stem = BasicStem(
in_channels=input_shape.channels,
out_channels=cfg.RESNETS.STEM_OUT_CHANNELS,
norm=norm,
caffe_maxpool=cfg.MODEL.MAX_POOL,
)
freeze_at = cfg.BACKBONE.FREEZE_AT
if freeze_at >= 1:
for p in stem.parameters():
p.requires_grad = False
out_features = cfg.RESNETS.OUT_FEATURES
depth = cfg.RESNETS.DEPTH
num_groups = cfg.RESNETS.NUM_GROUPS
width_per_group = cfg.RESNETS.WIDTH_PER_GROUP
bottleneck_channels = num_groups * width_per_group
in_channels = cfg.RESNETS.STEM_OUT_CHANNELS
out_channels = cfg.RESNETS.RES2_OUT_CHANNELS
stride_in_1x1 = cfg.RESNETS.STRIDE_IN_1X1
res5_dilation = cfg.RESNETS.RES5_DILATION
assert res5_dilation in {1, 2}, "res5_dilation cannot be {}.".format(res5_dilation)
num_blocks_per_stage = {50: [3, 4, 6, 3], 101: [3, 4, 23, 3], 152: [3, 8, 36, 3]}[depth]
stages = []
out_stage_idx = [{"res2": 2, "res3": 3, "res4": 4, "res5": 5}[f] for f in out_features]
max_stage_idx = max(out_stage_idx)
for idx, stage_idx in enumerate(range(2, max_stage_idx + 1)):
dilation = res5_dilation if stage_idx == 5 else 1
first_stride = 1 if idx == 0 or (stage_idx == 5 and dilation == 2) else 2
stage_kargs = {
"num_blocks": num_blocks_per_stage[idx],
"first_stride": first_stride,
"in_channels": in_channels,
"bottleneck_channels": bottleneck_channels,
"out_channels": out_channels,
"num_groups": num_groups,
"norm": norm,
"stride_in_1x1": stride_in_1x1,
"dilation": dilation,
}
stage_kargs["block_class"] = BottleneckBlock
blocks = ResNet.make_stage(**stage_kargs)
in_channels = out_channels
out_channels *= 2
bottleneck_channels *= 2
if freeze_at >= stage_idx:
for block in blocks:
block.freeze()
stages.append(blocks)
return ResNet(stem, stages, out_features=out_features)
def find_top_rpn_proposals(
proposals,
pred_objectness_logits,
images,
image_sizes,
nms_thresh,
pre_nms_topk,
post_nms_topk,
min_box_side_len,
training,
):
"""Args:
proposals (list[Tensor]): (L, N, Hi*Wi*A, 4).
pred_objectness_logits: tensors of length L.
nms_thresh (float): IoU threshold to use for NMS
pre_nms_topk (int): before nms
post_nms_topk (int): after nms
min_box_side_len (float): minimum proposal box side
training (bool): True if proposals are to be used in training,
Returns:
results (List[Dict]): stores post_nms_topk object proposals for image i.
"""
num_images = len(images)
device = proposals[0].device
# 1. Select top-k anchor for every level and every image
topk_scores = [] # #lvl Tensor, each of shape N x topk
topk_proposals = []
level_ids = [] # #lvl Tensor, each of shape (topk,)
batch_idx = torch.arange(num_images, device=device)
for level_id, proposals_i, logits_i in zip(itertools.count(), proposals, pred_objectness_logits):
Hi_Wi_A = logits_i.shape[1]
num_proposals_i = min(pre_nms_topk, Hi_Wi_A)
# sort is faster than topk (https://github.com/pytorch/pytorch/issues/22812)
# topk_scores_i, topk_idx = logits_i.topk(num_proposals_i, dim=1)
logits_i, idx = logits_i.sort(descending=True, dim=1)
topk_scores_i = logits_i[batch_idx, :num_proposals_i]
topk_idx = idx[batch_idx, :num_proposals_i]
# each is N x topk
topk_proposals_i = proposals_i[batch_idx[:, None], topk_idx] # N x topk x 4
topk_proposals.append(topk_proposals_i)
topk_scores.append(topk_scores_i)
level_ids.append(torch.full((num_proposals_i,), level_id, dtype=torch.int64, device=device))
# 2. Concat all levels together
topk_scores = torch.cat(topk_scores, dim=1)
topk_proposals = torch.cat(topk_proposals, dim=1)
level_ids = torch.cat(level_ids, dim=0)
# if I change to batched_nms, I wonder if this will make a difference
# 3. For each image, run a per-level NMS, and choose topk results.
results = []
for n, image_size in enumerate(image_sizes):
boxes = topk_proposals[n]
scores_per_img = topk_scores[n]
# I will have to take a look at the boxes clip method
_clip_box(boxes, image_size)
# filter empty boxes
keep = _nonempty_boxes(boxes, threshold=min_box_side_len)
lvl = level_ids
if keep.sum().item() != len(boxes):
boxes, scores_per_img, lvl = (
boxes[keep],
scores_per_img[keep],
level_ids[keep],
)
keep = batched_nms(boxes, scores_per_img, lvl, nms_thresh)
keep = keep[:post_nms_topk]
res = (boxes[keep], scores_per_img[keep])
results.append(res)
# I wonder if it would be possible for me to pad all these things.
return results
def subsample_labels(labels, num_samples, positive_fraction, bg_label):
"""
Returns:
pos_idx, neg_idx (Tensor):
1D vector of indices. The total length of both is `num_samples` or fewer.
"""
positive = torch.nonzero((labels != -1) & (labels != bg_label)).squeeze(1)
negative = torch.nonzero(labels == bg_label).squeeze(1)
num_pos = int(num_samples * positive_fraction)
# protect against not enough positive examples
num_pos = min(positive.numel(), num_pos)
num_neg = num_samples - num_pos
# protect against not enough negative examples
num_neg = min(negative.numel(), num_neg)
# randomly select positive and negative examples
perm1 = torch.randperm(positive.numel(), device=positive.device)[:num_pos]
perm2 = torch.randperm(negative.numel(), device=negative.device)[:num_neg]
pos_idx = positive[perm1]
neg_idx = negative[perm2]
return pos_idx, neg_idx
def add_ground_truth_to_proposals(gt_boxes, proposals):
raise NotImplementedError()
def add_ground_truth_to_proposals_single_image(gt_boxes, proposals):
raise NotImplementedError()
def _fmt_box_list(box_tensor, batch_index: int):
repeated_index = torch.full(
(len(box_tensor), 1),
batch_index,
dtype=box_tensor.dtype,
device=box_tensor.device,
)
return torch.cat((repeated_index, box_tensor), dim=1)
def convert_boxes_to_pooler_format(box_lists: List[torch.Tensor]):
pooler_fmt_boxes = torch.cat(
[_fmt_box_list(box_list, i) for i, box_list in enumerate(box_lists)],
dim=0,
)
return pooler_fmt_boxes
def assign_boxes_to_levels(
box_lists: List[torch.Tensor],
min_level: int,
max_level: int,
canonical_box_size: int,
canonical_level: int,
):
box_sizes = torch.sqrt(torch.cat([boxes.area() for boxes in box_lists]))
# Eqn.(1) in FPN paper
level_assignments = torch.floor(canonical_level + torch.log2(box_sizes / canonical_box_size + 1e-8))
# clamp level to (min, max), in case the box size is too large or too small
# for the available feature maps
level_assignments = torch.clamp(level_assignments, min=min_level, max=max_level)
return level_assignments.to(torch.int64) - min_level
# Helper Classes
class _NewEmptyTensorOp(torch.autograd.Function):
@staticmethod
def forward(ctx, x, new_shape):
ctx.shape = x.shape
return x.new_empty(new_shape)
@staticmethod
def backward(ctx, grad):
shape = ctx.shape
return _NewEmptyTensorOp.apply(grad, shape), None
class ShapeSpec(namedtuple("_ShapeSpec", ["channels", "height", "width", "stride"])):
def __new__(cls, *, channels=None, height=None, width=None, stride=None):
return super().__new__(cls, channels, height, width, stride)
class Box2BoxTransform(object):
"""
This R-CNN transformation scales the box's width and height
by exp(dw), exp(dh) and shifts a box's center by the offset
(dx * width, dy * height).
"""
def __init__(self, weights: Tuple[float, float, float, float], scale_clamp: float = None):
"""
Args:
weights (4-element tuple): Scaling factors that are applied to the
(dx, dy, dw, dh) deltas. In Fast R-CNN, these were originally set
such that the deltas have unit variance; now they are treated as
hyperparameters of the system.
scale_clamp (float): When predicting deltas, the predicted box scaling
factors (dw and dh) are clamped such that they are <= scale_clamp.
"""
self.weights = weights
if scale_clamp is not None:
self.scale_clamp = scale_clamp
else:
"""
Value for clamping large dw and dh predictions.
The heuristic is that we clamp such that dw and dh are no larger
than what would transform a 16px box into a 1000px box
(based on a small anchor, 16px, and a typical image size, 1000px).
"""
self.scale_clamp = math.log(1000.0 / 16)
def get_deltas(self, src_boxes, target_boxes):
"""
Get box regression transformation deltas (dx, dy, dw, dh) that can be used
to transform the `src_boxes` into the `target_boxes`. That is, the relation
``target_boxes == self.apply_deltas(deltas, src_boxes)`` is true (unless
any delta is too large and is clamped).
Args:
src_boxes (Tensor): source boxes, e.g., object proposals
target_boxes (Tensor): target of the transformation, e.g., ground-truth
boxes.
"""
assert isinstance(src_boxes, torch.Tensor), type(src_boxes)
assert isinstance(target_boxes, torch.Tensor), type(target_boxes)
src_widths = src_boxes[:, 2] - src_boxes[:, 0]
src_heights = src_boxes[:, 3] - src_boxes[:, 1]
src_ctr_x = src_boxes[:, 0] + 0.5 * src_widths
src_ctr_y = src_boxes[:, 1] + 0.5 * src_heights
target_widths = target_boxes[:, 2] - target_boxes[:, 0]
target_heights = target_boxes[:, 3] - target_boxes[:, 1]
target_ctr_x = target_boxes[:, 0] + 0.5 * target_widths
target_ctr_y = target_boxes[:, 1] + 0.5 * target_heights
wx, wy, ww, wh = self.weights
dx = wx * (target_ctr_x - src_ctr_x) / src_widths
dy = wy * (target_ctr_y - src_ctr_y) / src_heights
dw = ww * torch.log(target_widths / src_widths)
dh = wh * torch.log(target_heights / src_heights)
deltas = torch.stack((dx, dy, dw, dh), dim=1)
assert (src_widths > 0).all().item(), "Input boxes to Box2BoxTransform are not valid!"
return deltas
def apply_deltas(self, deltas, boxes):
"""
Apply transformation `deltas` (dx, dy, dw, dh) to `boxes`.
Args:
deltas (Tensor): transformation deltas of shape (N, k*4), where k >= 1.
deltas[i] represents k potentially different class-specific
box transformations for the single box boxes[i].
boxes (Tensor): boxes to transform, of shape (N, 4)
"""
boxes = boxes.to(deltas.dtype)
widths = boxes[:, 2] - boxes[:, 0]
heights = boxes[:, 3] - boxes[:, 1]
ctr_x = boxes[:, 0] + 0.5 * widths
ctr_y = boxes[:, 1] + 0.5 * heights
wx, wy, ww, wh = self.weights
dx = deltas[:, 0::4] / wx
dy = deltas[:, 1::4] / wy
dw = deltas[:, 2::4] / ww
dh = deltas[:, 3::4] / wh
# Prevent sending too large values into torch.exp()
dw = torch.clamp(dw, max=self.scale_clamp)
dh = torch.clamp(dh, max=self.scale_clamp)
pred_ctr_x = dx * widths[:, None] + ctr_x[:, None]
pred_ctr_y = dy * heights[:, None] + ctr_y[:, None]
pred_w = torch.exp(dw) * widths[:, None]
pred_h = torch.exp(dh) * heights[:, None]
pred_boxes = torch.zeros_like(deltas)
pred_boxes[:, 0::4] = pred_ctr_x - 0.5 * pred_w # x1
pred_boxes[:, 1::4] = pred_ctr_y - 0.5 * pred_h # y1
pred_boxes[:, 2::4] = pred_ctr_x + 0.5 * pred_w # x2
pred_boxes[:, 3::4] = pred_ctr_y + 0.5 * pred_h # y2
return pred_boxes
class Matcher(object):
"""
This class assigns to each predicted "element" (e.g., a box) a ground-truth
element. Each predicted element will have exactly zero or one matches; each
ground-truth element may be matched to zero or more predicted elements.
The matching is determined by the MxN match_quality_matrix, that characterizes
how well each (ground-truth, prediction)-pair match each other. For example,
if the elements are boxes, this matrix may contain box intersection-over-union
overlap values.
The matcher returns (a) a vector of length N containing the index of the
ground-truth element m in [0, M) that matches to prediction n in [0, N).
(b) a vector of length N containing the labels for each prediction.
"""
def __init__(
self,
thresholds: List[float],
labels: List[int],
allow_low_quality_matches: bool = False,
):
"""
Args:
thresholds (list): a list of thresholds used to stratify predictions
into levels.
labels (list): a list of values to label predictions belonging at
each level. A label can be one of {-1, 0, 1} signifying
{ignore, negative class, positive class}, respectively.
allow_low_quality_matches (bool): if True, produce additional matches or predictions with maximum match quality lower than high_threshold.
For example, thresholds = [0.3, 0.5] labels = [0, -1, 1] All predictions with iou < 0.3 will be marked with 0 and
thus will be considered as false positives while training. All predictions with 0.3 <= iou < 0.5 will be marked with -1 and
thus will be ignored. All predictions with 0.5 <= iou will be marked with 1 and thus will be considered as true positives.
"""
thresholds = thresholds[:]
assert thresholds[0] > 0
thresholds.insert(0, -float("inf"))
thresholds.append(float("inf"))
assert all([low <= high for (low, high) in zip(thresholds[:-1], thresholds[1:])])
assert all([label_i in [-1, 0, 1] for label_i in labels])
assert len(labels) == len(thresholds) - 1
self.thresholds = thresholds
self.labels = labels
self.allow_low_quality_matches = allow_low_quality_matches
def __call__(self, match_quality_matrix):
"""
Args:
match_quality_matrix (Tensor[float]): an MxN tensor, containing the pairwise quality between M ground-truth elements and N predicted
elements. All elements must be >= 0 (due to the us of `torch.nonzero` for selecting indices in :meth:`set_low_quality_matches_`).
Returns:
matches (Tensor[int64]): a vector of length N, where matches[i] is a matched ground-truth index in [0, M)
match_labels (Tensor[int8]): a vector of length N, where pred_labels[i] indicates true or false positive or ignored
"""
assert match_quality_matrix.dim() == 2
if match_quality_matrix.numel() == 0:
default_matches = match_quality_matrix.new_full((match_quality_matrix.size(1),), 0, dtype=torch.int64)
# When no gt boxes exist, we define IOU = 0 and therefore set labels
# to `self.labels[0]`, which usually defaults to background class 0
# To choose to ignore instead,
# can make labels=[-1,0,-1,1] + set appropriate thresholds
default_match_labels = match_quality_matrix.new_full(
(match_quality_matrix.size(1),), self.labels[0], dtype=torch.int8
)
return default_matches, default_match_labels
assert torch.all(match_quality_matrix >= 0)
# match_quality_matrix is M (gt) x N (predicted)
# Max over gt elements (dim 0) to find best gt candidate for each prediction
matched_vals, matches = match_quality_matrix.max(dim=0)
match_labels = matches.new_full(matches.size(), 1, dtype=torch.int8)
for (l, low, high) in zip(self.labels, self.thresholds[:-1], self.thresholds[1:]):
low_high = (matched_vals >= low) & (matched_vals < high)
match_labels[low_high] = l
if self.allow_low_quality_matches:
self.set_low_quality_matches_(match_labels, match_quality_matrix)
return matches, match_labels
def set_low_quality_matches_(self, match_labels, match_quality_matrix):
"""
Produce additional matches for predictions that have only low-quality matches.
Specifically, for each ground-truth G find the set of predictions that have
maximum overlap with it (including ties); for each prediction in that set, if
it is unmatched, then match it to the ground-truth G.
This function implements the RPN assignment case (i)
in Sec. 3.1.2 of Faster R-CNN.
"""
# For each gt, find the prediction with which it has highest quality
highest_quality_foreach_gt, _ = match_quality_matrix.max(dim=1)
# Find the highest quality match available, even if it is low, including ties.
# Note that the matches qualities must be positive due to the use of
# `torch.nonzero`.
of_quality_inds = match_quality_matrix == highest_quality_foreach_gt[:, None]
if of_quality_inds.dim() == 0:
(_, pred_inds_with_highest_quality) = of_quality_inds.unsqueeze(0).nonzero().unbind(1)
else:
(_, pred_inds_with_highest_quality) = of_quality_inds.nonzero().unbind(1)
match_labels[pred_inds_with_highest_quality] = 1
class RPNOutputs(object):
def __init__(
self,
box2box_transform,
anchor_matcher,
batch_size_per_image,
positive_fraction,
images,
pred_objectness_logits,
pred_anchor_deltas,
anchors,
boundary_threshold=0,
gt_boxes=None,
smooth_l1_beta=0.0,
):
"""
Args:
box2box_transform (Box2BoxTransform): :class:`Box2BoxTransform` instance for anchor-proposal transformations.
anchor_matcher (Matcher): :class:`Matcher` instance for matching anchors to ground-truth boxes; used to determine training labels.
batch_size_per_image (int): number of proposals to sample when training
positive_fraction (float): target fraction of sampled proposals that should be positive
images (ImageList): :class:`ImageList` instance representing N input images
pred_objectness_logits (list[Tensor]): A list of L elements. Element i is a tensor of shape (N, A, Hi, W)
pred_anchor_deltas (list[Tensor]): A list of L elements. Element i is a tensor of shape (N, A*4, Hi, Wi)
anchors (list[torch.Tensor]): nested list of boxes. anchors[i][j] at (n, l) stores anchor array for feature map l
boundary_threshold (int): if >= 0, then anchors that extend beyond the image boundary by more than boundary_thresh are not used in training.
gt_boxes (list[Boxes], optional): A list of N elements.
smooth_l1_beta (float): The transition point between L1 and L2 lossn. When set to 0, the loss becomes L1. When +inf, it is ignored
"""
self.box2box_transform = box2box_transform
self.anchor_matcher = anchor_matcher
self.batch_size_per_image = batch_size_per_image
self.positive_fraction = positive_fraction
self.pred_objectness_logits = pred_objectness_logits
self.pred_anchor_deltas = pred_anchor_deltas
self.anchors = anchors
self.gt_boxes = gt_boxes
self.num_feature_maps = len(pred_objectness_logits)
self.num_images = len(images)
self.boundary_threshold = boundary_threshold
self.smooth_l1_beta = smooth_l1_beta
def _get_ground_truth(self):
raise NotImplementedError()
def predict_proposals(self):
# pred_anchor_deltas: (L, N, ? Hi, Wi)
# anchors:(N, L, -1, B)
# here we loop over specific feature map, NOT images
proposals = []
anchors = self.anchors.transpose(0, 1)
for anchors_i, pred_anchor_deltas_i in zip(anchors, self.pred_anchor_deltas):
B = anchors_i.size(-1)
N, _, Hi, Wi = pred_anchor_deltas_i.shape
anchors_i = anchors_i.flatten(start_dim=0, end_dim=1)
pred_anchor_deltas_i = pred_anchor_deltas_i.view(N, -1, B, Hi, Wi).permute(0, 3, 4, 1, 2).reshape(-1, B)
proposals_i = self.box2box_transform.apply_deltas(pred_anchor_deltas_i, anchors_i)
# Append feature map proposals with shape (N, Hi*Wi*A, B)
proposals.append(proposals_i.view(N, -1, B))
proposals = torch.stack(proposals)
return proposals
def predict_objectness_logits(self):
"""
Returns:
pred_objectness_logits (list[Tensor]) -> (N, Hi*Wi*A).
"""
pred_objectness_logits = [
# Reshape: (N, A, Hi, Wi) -> (N, Hi, Wi, A) -> (N, Hi*Wi*A)
score.permute(0, 2, 3, 1).reshape(self.num_images, -1)
for score in self.pred_objectness_logits
]
return pred_objectness_logits
# Main Classes
class Conv2d(nn.Conv2d):
def __init__(self, *args, **kwargs):
norm = kwargs.pop("norm", None)
activation = kwargs.pop("activation", None)
super().__init__(*args, **kwargs)
self.norm = norm
self.activation = activation
def forward(self, x):
if x.numel() == 0 and self.training:
assert not isinstance(self.norm, nn.SyncBatchNorm)
if x.numel() == 0:
assert not isinstance(self.norm, nn.GroupNorm)
output_shape = [
(i + 2 * p - (di * (k - 1) + 1)) // s + 1
for i, p, di, k, s in zip(
x.shape[-2:],
self.padding,
self.dilation,
self.kernel_size,
self.stride,
)
]
output_shape = [x.shape[0], self.weight.shape[0]] + output_shape
empty = _NewEmptyTensorOp.apply(x, output_shape)
if self.training:
_dummy = sum(x.view(-1)[0] for x in self.parameters()) * 0.0
return empty + _dummy
else:
return empty
x = super().forward(x)
if self.norm is not None:
x = self.norm(x)
if self.activation is not None:
x = self.activation(x)
return x
class LastLevelMaxPool(nn.Module):
"""
This module is used in the original FPN to generate a downsampled P6 feature from P5.
"""
def __init__(self):
super().__init__()
self.num_levels = 1
self.in_feature = "p5"
def forward(self, x):
return [nn.functional.max_pool2d(x, kernel_size=1, stride=2, padding=0)]
class LastLevelP6P7(nn.Module):
"""
This module is used in RetinaNet to generate extra layers, P6 and P7 from C5 feature.
"""
def __init__(self, in_channels, out_channels):
super().__init__()
self.num_levels = 2
self.in_feature = "res5"
self.p6 = nn.Conv2d(in_channels, out_channels, 3, 2, 1)
self.p7 = nn.Conv2d(out_channels, out_channels, 3, 2, 1)
def forward(self, c5):
p6 = self.p6(c5)
p7 = self.p7(nn.functional.relu(p6))
return [p6, p7]
class BasicStem(nn.Module):
def __init__(self, in_channels=3, out_channels=64, norm="BN", caffe_maxpool=False):
super().__init__()
self.conv1 = Conv2d(
in_channels,
out_channels,
kernel_size=7,
stride=2,
padding=3,
bias=False,
norm=get_norm(norm, out_channels),
)
self.caffe_maxpool = caffe_maxpool
# use pad 1 instead of pad zero
def forward(self, x):
x = self.conv1(x)
x = nn.functional.relu_(x)
if self.caffe_maxpool:
x = nn.functional.max_pool2d(x, kernel_size=3, stride=2, padding=0, ceil_mode=True)
else:
x = nn.functional.max_pool2d(x, kernel_size=3, stride=2, padding=1)
return x
@property
def out_channels(self):
return self.conv1.out_channels
@property
def stride(self):
return 4 # = stride 2 conv -> stride 2 max pool
class ResNetBlockBase(nn.Module):
def __init__(self, in_channels, out_channels, stride):
super().__init__()
self.in_channels = in_channels
self.out_channels = out_channels
self.stride = stride
def freeze(self):
for p in self.parameters():
p.requires_grad = False
return self
class BottleneckBlock(ResNetBlockBase):
def __init__(
self,
in_channels,
out_channels,
bottleneck_channels,
stride=1,
num_groups=1,
norm="BN",
stride_in_1x1=False,
dilation=1,
):
super().__init__(in_channels, out_channels, stride)
if in_channels != out_channels:
self.shortcut = Conv2d(
in_channels,
out_channels,
kernel_size=1,
stride=stride,
bias=False,
norm=get_norm(norm, out_channels),
)
else:
self.shortcut = None
# The original MSRA ResNet models have stride in the first 1x1 conv
# The subsequent fb.torch.resnet and Caffe2 ResNe[X]t implementations have
# stride in the 3x3 conv
stride_1x1, stride_3x3 = (stride, 1) if stride_in_1x1 else (1, stride)
self.conv1 = Conv2d(
in_channels,
bottleneck_channels,
kernel_size=1,
stride=stride_1x1,
bias=False,
norm=get_norm(norm, bottleneck_channels),
)
self.conv2 = Conv2d(
bottleneck_channels,
bottleneck_channels,
kernel_size=3,
stride=stride_3x3,
padding=1 * dilation,
bias=False,
groups=num_groups,
dilation=dilation,
norm=get_norm(norm, bottleneck_channels),
)
self.conv3 = Conv2d(
bottleneck_channels,
out_channels,
kernel_size=1,
bias=False,
norm=get_norm(norm, out_channels),
)
def forward(self, x):
out = self.conv1(x)
out = nn.functional.relu_(out)
out = self.conv2(out)
out = nn.functional.relu_(out)
out = self.conv3(out)
if self.shortcut is not None:
shortcut = self.shortcut(x)
else:
shortcut = x
out += shortcut
out = nn.functional.relu_(out)
return out
class Backbone(nn.Module, metaclass=ABCMeta):
def __init__(self):
super().__init__()
@abstractmethod
def forward(self):
pass
@property
def size_divisibility(self):
"""
Some backbones require the input height and width to be divisible by a specific integer. This is
typically true for encoder / decoder type networks with lateral connection (e.g., FPN) for which feature maps need to match
dimension in the "bottom up" and "top down" paths. Set to 0 if no specific input size divisibility is required.
"""
return 0
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name],
stride=self._out_feature_strides[name],
)
for name in self._out_features
}
@property
def out_features(self):
"""deprecated"""
return self._out_features
@property
def out_feature_strides(self):
"""deprecated"""
return {f: self._out_feature_strides[f] for f in self._out_features}
@property
def out_feature_channels(self):
"""deprecated"""
return {f: self._out_feature_channels[f] for f in self._out_features}
class ResNet(Backbone):
def __init__(self, stem, stages, num_classes=None, out_features=None):
"""
Args:
stem (nn.Module): a stem module
stages (list[list[ResNetBlock]]): several (typically 4) stages, each contains multiple :class:`ResNetBlockBase`.
num_classes (None or int): if None, will not perform classification.
out_features (list[str]): name of the layers whose outputs should be returned in forward. Can be anything in:
"stem", "linear", or "res2" ... If None, will return the output of the last layer.
"""
super(ResNet, self).__init__()
self.stem = stem
self.num_classes = num_classes
current_stride = self.stem.stride
self._out_feature_strides = {"stem": current_stride}
self._out_feature_channels = {"stem": self.stem.out_channels}
self.stages_and_names = []
for i, blocks in enumerate(stages):
for block in blocks:
assert isinstance(block, ResNetBlockBase), block
curr_channels = block.out_channels
stage = nn.Sequential(*blocks)
name = "res" + str(i + 2)
self.add_module(name, stage)
self.stages_and_names.append((stage, name))
self._out_feature_strides[name] = current_stride = int(
current_stride * np.prod([k.stride for k in blocks])
)
self._out_feature_channels[name] = blocks[-1].out_channels
if num_classes is not None:
self.avgpool = nn.AdaptiveAvgPool2d((1, 1))
self.linear = nn.Linear(curr_channels, num_classes)
# Sec 5.1 in "Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour":
# "The 1000-way fully-connected layer is initialized by
# drawing weights from a zero-mean Gaussian with std of 0.01."
nn.init.normal_(self.linear.weight, stddev=0.01)
name = "linear"
if out_features is None:
out_features = [name]
self._out_features = out_features
assert len(self._out_features)
children = [x[0] for x in self.named_children()]
for out_feature in self._out_features:
assert out_feature in children, "Available children: {}".format(", ".join(children))
def forward(self, x):
outputs = {}
x = self.stem(x)
if "stem" in self._out_features:
outputs["stem"] = x
for stage, name in self.stages_and_names:
x = stage(x)
if name in self._out_features:
outputs[name] = x
if self.num_classes is not None:
x = self.avgpool(x)
x = self.linear(x)
if "linear" in self._out_features:
outputs["linear"] = x
return outputs
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name],
stride=self._out_feature_strides[name],
)
for name in self._out_features
}
@staticmethod
def make_stage(
block_class,
num_blocks,
first_stride=None,
*,
in_channels,
out_channels,
**kwargs,
):
"""
Usually, layers that produce the same feature map spatial size
are defined as one "stage".
Under such definition, stride_per_block[1:] should all be 1.
"""
if first_stride is not None:
assert "stride" not in kwargs and "stride_per_block" not in kwargs
kwargs["stride_per_block"] = [first_stride] + [1] * (num_blocks - 1)
blocks = []
for i in range(num_blocks):
curr_kwargs = {}
for k, v in kwargs.items():
if k.endswith("_per_block"):
assert len(v) == num_blocks, (
f"Argument '{k}' of make_stage should have the " f"same length as num_blocks={num_blocks}."
)
newk = k[: -len("_per_block")]
assert newk not in kwargs, f"Cannot call make_stage with both {k} and {newk}!"
curr_kwargs[newk] = v[i]
else:
curr_kwargs[k] = v
blocks.append(block_class(in_channels=in_channels, out_channels=out_channels, **curr_kwargs))
in_channels = out_channels
return blocks
class ROIPooler(nn.Module):
"""
Region of interest feature map pooler that supports pooling from one or more
feature maps.
"""
def __init__(
self,
output_size,
scales,
sampling_ratio,
canonical_box_size=224,
canonical_level=4,
):
super().__init__()
# assumption that stride is a power of 2.
min_level = -math.log2(scales[0])
max_level = -math.log2(scales[-1])
# a bunch of testing
assert math.isclose(min_level, int(min_level)) and math.isclose(max_level, int(max_level))
assert len(scales) == max_level - min_level + 1, "not pyramid"
assert 0 < min_level and min_level <= max_level
if isinstance(output_size, int):
output_size = (output_size, output_size)
assert len(output_size) == 2 and isinstance(output_size[0], int) and isinstance(output_size[1], int)
if len(scales) > 1:
assert min_level <= canonical_level and canonical_level <= max_level
assert canonical_box_size > 0
self.output_size = output_size
self.min_level = int(min_level)
self.max_level = int(max_level)
self.level_poolers = nn.ModuleList(RoIPool(output_size, spatial_scale=scale) for scale in scales)
self.canonical_level = canonical_level
self.canonical_box_size = canonical_box_size
def forward(self, feature_maps, boxes):
"""
Args:
feature_maps: List[torch.Tensor(N,C,W,H)]
box_lists: list[torch.Tensor])
Returns:
A tensor of shape(N*B, Channels, output_size, output_size)
"""
x = [v for v in feature_maps.values()]
num_level_assignments = len(self.level_poolers)
assert len(x) == num_level_assignments and len(boxes) == x[0].size(0)
pooler_fmt_boxes = convert_boxes_to_pooler_format(boxes)
if num_level_assignments == 1:
return self.level_poolers[0](x[0], pooler_fmt_boxes)
level_assignments = assign_boxes_to_levels(
boxes,
self.min_level,
self.max_level,
self.canonical_box_size,
self.canonical_level,
)
num_boxes = len(pooler_fmt_boxes)
num_channels = x[0].shape[1]
output_size = self.output_size[0]
dtype, device = x[0].dtype, x[0].device
output = torch.zeros(
(num_boxes, num_channels, output_size, output_size),
dtype=dtype,
device=device,
)
for level, (x_level, pooler) in enumerate(zip(x, self.level_poolers)):
inds = torch.nonzero(level_assignments == level).squeeze(1)
pooler_fmt_boxes_level = pooler_fmt_boxes[inds]
output[inds] = pooler(x_level, pooler_fmt_boxes_level)
return output
class ROIOutputs(object):
def __init__(self, cfg, training=False):
self.smooth_l1_beta = cfg.ROI_BOX_HEAD.SMOOTH_L1_BETA
self.box2box_transform = Box2BoxTransform(weights=cfg.ROI_BOX_HEAD.BBOX_REG_WEIGHTS)
self.training = training
self.score_thresh = cfg.ROI_HEADS.SCORE_THRESH_TEST
self.min_detections = cfg.MIN_DETECTIONS
self.max_detections = cfg.MAX_DETECTIONS
nms_thresh = cfg.ROI_HEADS.NMS_THRESH_TEST
if not isinstance(nms_thresh, list):
nms_thresh = [nms_thresh]
self.nms_thresh = nms_thresh
def _predict_boxes(self, proposals, box_deltas, preds_per_image):
num_pred = box_deltas.size(0)
B = proposals[0].size(-1)
K = box_deltas.size(-1) // B
box_deltas = box_deltas.view(num_pred * K, B)
proposals = torch.cat(proposals, dim=0).unsqueeze(-2).expand(num_pred, K, B)
proposals = proposals.reshape(-1, B)
boxes = self.box2box_transform.apply_deltas(box_deltas, proposals)
return boxes.view(num_pred, K * B).split(preds_per_image, dim=0)
def _predict_objs(self, obj_logits, preds_per_image):
probs = nn.functional.softmax(obj_logits, dim=-1)
probs = probs.split(preds_per_image, dim=0)
return probs
def _predict_attrs(self, attr_logits, preds_per_image):
attr_logits = attr_logits[..., :-1].softmax(-1)
attr_probs, attrs = attr_logits.max(-1)
return attr_probs.split(preds_per_image, dim=0), attrs.split(preds_per_image, dim=0)
@torch.no_grad()
def inference(
self,
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=None,
):
# only the pred boxes is the
preds_per_image = [p.size(0) for p in pred_boxes]
boxes_all = self._predict_boxes(pred_boxes, box_deltas, preds_per_image)
obj_scores_all = self._predict_objs(obj_logits, preds_per_image) # list of length N
attr_probs_all, attrs_all = self._predict_attrs(attr_logits, preds_per_image)
features = features.split(preds_per_image, dim=0)
# fun for each image too, also I can experiment and do multiple images
final_results = []
zipped = zip(boxes_all, obj_scores_all, attr_probs_all, attrs_all, sizes)
for i, (boxes, obj_scores, attr_probs, attrs, size) in enumerate(zipped):
for nms_t in self.nms_thresh:
outputs = do_nms(
boxes,
obj_scores,
size,
self.score_thresh,
nms_t,
self.min_detections,
self.max_detections,
)
if outputs is not None:
max_boxes, max_scores, classes, ids = outputs
break
if scales is not None:
scale_yx = scales[i]
max_boxes[:, 0::2] *= scale_yx[1]
max_boxes[:, 1::2] *= scale_yx[0]
final_results.append(
(
max_boxes,
classes,
max_scores,
attrs[ids],
attr_probs[ids],
features[i][ids],
)
)
boxes, classes, class_probs, attrs, attr_probs, roi_features = map(list, zip(*final_results))
return boxes, classes, class_probs, attrs, attr_probs, roi_features
def training(self, obj_logits, attr_logits, box_deltas, pred_boxes, features, sizes):
pass
def __call__(
self,
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=None,
):
if self.training:
raise NotImplementedError()
return self.inference(
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=scales,
)
class Res5ROIHeads(nn.Module):
"""
ROIHeads perform all per-region computation in an R-CNN.
It contains logic of cropping the regions, extract per-region features
(by the res-5 block in this case), and make per-region predictions.
"""
def __init__(self, cfg, input_shape):
super().__init__()
self.batch_size_per_image = cfg.RPN.BATCH_SIZE_PER_IMAGE
self.positive_sample_fraction = cfg.ROI_HEADS.POSITIVE_FRACTION
self.in_features = cfg.ROI_HEADS.IN_FEATURES
self.num_classes = cfg.ROI_HEADS.NUM_CLASSES
self.proposal_append_gt = cfg.ROI_HEADS.PROPOSAL_APPEND_GT
self.feature_strides = {k: v.stride for k, v in input_shape.items()}
self.feature_channels = {k: v.channels for k, v in input_shape.items()}
self.cls_agnostic_bbox_reg = cfg.ROI_BOX_HEAD.CLS_AGNOSTIC_BBOX_REG
self.stage_channel_factor = 2**3 # res5 is 8x res2
self.out_channels = cfg.RESNETS.RES2_OUT_CHANNELS * self.stage_channel_factor
# self.proposal_matcher = Matcher(
# cfg.ROI_HEADS.IOU_THRESHOLDS,
# cfg.ROI_HEADS.IOU_LABELS,
# allow_low_quality_matches=False,
# )
pooler_resolution = cfg.ROI_BOX_HEAD.POOLER_RESOLUTION
pooler_scales = (1.0 / self.feature_strides[self.in_features[0]],)
sampling_ratio = cfg.ROI_BOX_HEAD.POOLER_SAMPLING_RATIO
res5_halve = cfg.ROI_BOX_HEAD.RES5HALVE
use_attr = cfg.ROI_BOX_HEAD.ATTR
num_attrs = cfg.ROI_BOX_HEAD.NUM_ATTRS
self.pooler = ROIPooler(
output_size=pooler_resolution,
scales=pooler_scales,
sampling_ratio=sampling_ratio,
)
self.res5 = self._build_res5_block(cfg)
if not res5_halve:
"""
Modifications for VG in RoI heads:
1. Change the stride of conv1 and shortcut in Res5.Block1 from 2 to 1
2. Modifying all conv2 with (padding: 1 --> 2) and (dilation: 1 --> 2)
"""
self.res5[0].conv1.stride = (1, 1)
self.res5[0].shortcut.stride = (1, 1)
for i in range(3):
self.res5[i].conv2.padding = (2, 2)
self.res5[i].conv2.dilation = (2, 2)
self.box_predictor = FastRCNNOutputLayers(
self.out_channels,
self.num_classes,
self.cls_agnostic_bbox_reg,
use_attr=use_attr,
num_attrs=num_attrs,
)
def _build_res5_block(self, cfg):
stage_channel_factor = self.stage_channel_factor # res5 is 8x res2
num_groups = cfg.RESNETS.NUM_GROUPS
width_per_group = cfg.RESNETS.WIDTH_PER_GROUP
bottleneck_channels = num_groups * width_per_group * stage_channel_factor
out_channels = self.out_channels
stride_in_1x1 = cfg.RESNETS.STRIDE_IN_1X1
norm = cfg.RESNETS.NORM
blocks = ResNet.make_stage(
BottleneckBlock,
3,
first_stride=2,
in_channels=out_channels // 2,
bottleneck_channels=bottleneck_channels,
out_channels=out_channels,
num_groups=num_groups,
norm=norm,
stride_in_1x1=stride_in_1x1,
)
return nn.Sequential(*blocks)
def _shared_roi_transform(self, features, boxes):
x = self.pooler(features, boxes)
return self.res5(x)
def forward(self, features, proposal_boxes, gt_boxes=None):
if self.training:
"""
see https://github.com/airsplay/py-bottom-up-attention/\
blob/master/detectron2/modeling/roi_heads/roi_heads.py
"""
raise NotImplementedError()
assert not proposal_boxes[0].requires_grad
box_features = self._shared_roi_transform(features, proposal_boxes)
feature_pooled = box_features.mean(dim=[2, 3]) # pooled to 1x1
obj_logits, attr_logits, pred_proposal_deltas = self.box_predictor(feature_pooled)
return obj_logits, attr_logits, pred_proposal_deltas, feature_pooled
class AnchorGenerator(nn.Module):
"""
For a set of image sizes and feature maps, computes a set of anchors.
"""
def __init__(self, cfg, input_shape: List[ShapeSpec]):
super().__init__()
sizes = cfg.ANCHOR_GENERATOR.SIZES
aspect_ratios = cfg.ANCHOR_GENERATOR.ASPECT_RATIOS
self.strides = [x.stride for x in input_shape]
self.offset = cfg.ANCHOR_GENERATOR.OFFSET
assert 0.0 <= self.offset < 1.0, self.offset
"""
sizes (list[list[int]]): sizes[i] is the list of anchor sizes for feat map i
1. given in absolute lengths in units of the input image;
2. they do not dynamically scale if the input image size changes.
aspect_ratios (list[list[float]])
strides (list[int]): stride of each input feature.
"""
self.num_features = len(self.strides)
self.cell_anchors = nn.ParameterList(self._calculate_anchors(sizes, aspect_ratios))
self._spacial_feat_dim = 4
def _calculate_anchors(self, sizes, aspect_ratios):
# If one size (or aspect ratio) is specified and there are multiple feature
# maps, then we "broadcast" anchors of that single size (or aspect ratio)
if len(sizes) == 1:
sizes *= self.num_features
if len(aspect_ratios) == 1:
aspect_ratios *= self.num_features
assert self.num_features == len(sizes)
assert self.num_features == len(aspect_ratios)
cell_anchors = [self.generate_cell_anchors(s, a).float() for s, a in zip(sizes, aspect_ratios)]
return cell_anchors
@property
def box_dim(self):
return self._spacial_feat_dim
@property
def num_cell_anchors(self):
"""
Returns:
list[int]: Each int is the number of anchors at every pixel location, on that feature map.
"""
return [len(cell_anchors) for cell_anchors in self.cell_anchors]
def grid_anchors(self, grid_sizes):
anchors = []
for (size, stride, base_anchors) in zip(grid_sizes, self.strides, self.cell_anchors):
shift_x, shift_y = _create_grid_offsets(size, stride, self.offset, base_anchors.device)
shifts = torch.stack((shift_x, shift_y, shift_x, shift_y), dim=1)
anchors.append((shifts.view(-1, 1, 4) + base_anchors.view(1, -1, 4)).reshape(-1, 4))
return anchors
def generate_cell_anchors(self, sizes=(32, 64, 128, 256, 512), aspect_ratios=(0.5, 1, 2)):
"""
anchors are continuous geometric rectangles
centered on one feature map point sample.
We can later build the set of anchors
for the entire feature map by tiling these tensors
"""
anchors = []
for size in sizes:
area = size**2.0
for aspect_ratio in aspect_ratios:
w = math.sqrt(area / aspect_ratio)
h = aspect_ratio * w
x0, y0, x1, y1 = -w / 2.0, -h / 2.0, w / 2.0, h / 2.0
anchors.append([x0, y0, x1, y1])
return nn.Parameter(torch.tensor(anchors))
def forward(self, features):
"""
Args:
features List[torch.Tensor]: list of feature maps on which to generate anchors.
Returns:
torch.Tensor: a list of #image elements.
"""
num_images = features[0].size(0)
grid_sizes = [feature_map.shape[-2:] for feature_map in features]
anchors_over_all_feature_maps = self.grid_anchors(grid_sizes)
anchors_over_all_feature_maps = torch.stack(anchors_over_all_feature_maps)
return anchors_over_all_feature_maps.unsqueeze(0).repeat_interleave(num_images, dim=0)
class RPNHead(nn.Module):
"""
RPN classification and regression heads. Uses a 3x3 conv to produce a shared
hidden state from which one 1x1 conv predicts objectness logits for each anchor
and a second 1x1 conv predicts bounding-box deltas specifying how to deform
each anchor into an object proposal.
"""
def __init__(self, cfg, input_shape: List[ShapeSpec]):
super().__init__()
# Standard RPN is shared across levels:
in_channels = [s.channels for s in input_shape]
assert len(set(in_channels)) == 1, "Each level must have the same channel!"
in_channels = in_channels[0]
anchor_generator = AnchorGenerator(cfg, input_shape)
num_cell_anchors = anchor_generator.num_cell_anchors
box_dim = anchor_generator.box_dim
assert len(set(num_cell_anchors)) == 1, "Each level must have the same number of cell anchors"
num_cell_anchors = num_cell_anchors[0]
if cfg.PROPOSAL_GENERATOR.HIDDEN_CHANNELS == -1:
hid_channels = in_channels
else:
hid_channels = cfg.PROPOSAL_GENERATOR.HIDDEN_CHANNELS
# Modifications for VG in RPN (modeling/proposal_generator/rpn.py)
# Use hidden dim instead fo the same dim as Res4 (in_channels)
# 3x3 conv for the hidden representation
self.conv = nn.Conv2d(in_channels, hid_channels, kernel_size=3, stride=1, padding=1)
# 1x1 conv for predicting objectness logits
self.objectness_logits = nn.Conv2d(hid_channels, num_cell_anchors, kernel_size=1, stride=1)
# 1x1 conv for predicting box2box transform deltas
self.anchor_deltas = nn.Conv2d(hid_channels, num_cell_anchors * box_dim, kernel_size=1, stride=1)
for layer in [self.conv, self.objectness_logits, self.anchor_deltas]:
nn.init.normal_(layer.weight, std=0.01)
nn.init.constant_(layer.bias, 0)
def forward(self, features):
"""
Args:
features (list[Tensor]): list of feature maps
"""
pred_objectness_logits = []
pred_anchor_deltas = []
for x in features:
t = nn.functional.relu(self.conv(x))
pred_objectness_logits.append(self.objectness_logits(t))
pred_anchor_deltas.append(self.anchor_deltas(t))
return pred_objectness_logits, pred_anchor_deltas
class RPN(nn.Module):
"""
Region Proposal Network, introduced by the Faster R-CNN paper.
"""
def __init__(self, cfg, input_shape: Dict[str, ShapeSpec]):
super().__init__()
self.min_box_side_len = cfg.PROPOSAL_GENERATOR.MIN_SIZE
self.in_features = cfg.RPN.IN_FEATURES
self.nms_thresh = cfg.RPN.NMS_THRESH
self.batch_size_per_image = cfg.RPN.BATCH_SIZE_PER_IMAGE
self.positive_fraction = cfg.RPN.POSITIVE_FRACTION
self.smooth_l1_beta = cfg.RPN.SMOOTH_L1_BETA
self.loss_weight = cfg.RPN.LOSS_WEIGHT
self.pre_nms_topk = {
True: cfg.RPN.PRE_NMS_TOPK_TRAIN,
False: cfg.RPN.PRE_NMS_TOPK_TEST,
}
self.post_nms_topk = {
True: cfg.RPN.POST_NMS_TOPK_TRAIN,
False: cfg.RPN.POST_NMS_TOPK_TEST,
}
self.boundary_threshold = cfg.RPN.BOUNDARY_THRESH
self.anchor_generator = AnchorGenerator(cfg, [input_shape[f] for f in self.in_features])
self.box2box_transform = Box2BoxTransform(weights=cfg.RPN.BBOX_REG_WEIGHTS)
self.anchor_matcher = Matcher(
cfg.RPN.IOU_THRESHOLDS,
cfg.RPN.IOU_LABELS,
allow_low_quality_matches=True,
)
self.rpn_head = RPNHead(cfg, [input_shape[f] for f in self.in_features])
def training(self, images, image_shapes, features, gt_boxes):
pass
def inference(self, outputs, images, image_shapes, features, gt_boxes=None):
outputs = find_top_rpn_proposals(
outputs.predict_proposals(),
outputs.predict_objectness_logits(),
images,
image_shapes,
self.nms_thresh,
self.pre_nms_topk[self.training],
self.post_nms_topk[self.training],
self.min_box_side_len,
self.training,
)
results = []
for img in outputs:
im_boxes, img_box_logits = img
img_box_logits, inds = img_box_logits.sort(descending=True)
im_boxes = im_boxes[inds]
results.append((im_boxes, img_box_logits))
(proposal_boxes, logits) = tuple(map(list, zip(*results)))
return proposal_boxes, logits
def forward(self, images, image_shapes, features, gt_boxes=None):
"""
Args:
images (torch.Tensor): input images of length `N`
features (dict[str: Tensor])
gt_instances
"""
# features is dict, key = block level, v = feature_map
features = [features[f] for f in self.in_features]
pred_objectness_logits, pred_anchor_deltas = self.rpn_head(features)
anchors = self.anchor_generator(features)
outputs = RPNOutputs(
self.box2box_transform,
self.anchor_matcher,
self.batch_size_per_image,
self.positive_fraction,
images,
pred_objectness_logits,
pred_anchor_deltas,
anchors,
self.boundary_threshold,
gt_boxes,
self.smooth_l1_beta,
)
# For RPN-only models, the proposals are the final output
if self.training:
raise NotImplementedError()
return self.training(outputs, images, image_shapes, features, gt_boxes)
else:
return self.inference(outputs, images, image_shapes, features, gt_boxes)
class FastRCNNOutputLayers(nn.Module):
"""
Two linear layers for predicting Fast R-CNN outputs:
(1) proposal-to-detection box regression deltas
(2) classification scores
"""
def __init__(
self,
input_size,
num_classes,
cls_agnostic_bbox_reg,
box_dim=4,
use_attr=False,
num_attrs=-1,
):
"""
Args:
input_size (int): channels, or (channels, height, width)
num_classes (int)
cls_agnostic_bbox_reg (bool)
box_dim (int)
"""
super().__init__()
if not isinstance(input_size, int):
input_size = np.prod(input_size)
# (do + 1 for background class)
self.cls_score = nn.Linear(input_size, num_classes + 1)
num_bbox_reg_classes = 1 if cls_agnostic_bbox_reg else num_classes
self.bbox_pred = nn.Linear(input_size, num_bbox_reg_classes * box_dim)
self.use_attr = use_attr
if use_attr:
"""
Modifications for VG in RoI heads
Embedding: {num_classes + 1} --> {input_size // 8}
Linear: {input_size + input_size // 8} --> {input_size // 4}
Linear: {input_size // 4} --> {num_attrs + 1}
"""
self.cls_embedding = nn.Embedding(num_classes + 1, input_size // 8)
self.fc_attr = nn.Linear(input_size + input_size // 8, input_size // 4)
self.attr_score = nn.Linear(input_size // 4, num_attrs + 1)
nn.init.normal_(self.cls_score.weight, std=0.01)
nn.init.normal_(self.bbox_pred.weight, std=0.001)
for item in [self.cls_score, self.bbox_pred]:
nn.init.constant_(item.bias, 0)
def forward(self, roi_features):
if roi_features.dim() > 2:
roi_features = torch.flatten(roi_features, start_dim=1)
scores = self.cls_score(roi_features)
proposal_deltas = self.bbox_pred(roi_features)
if self.use_attr:
_, max_class = scores.max(-1) # [b, c] --> [b]
cls_emb = self.cls_embedding(max_class) # [b] --> [b, 256]
roi_features = torch.cat([roi_features, cls_emb], -1) # [b, 2048] + [b, 256] --> [b, 2304]
roi_features = self.fc_attr(roi_features)
roi_features = nn.functional.relu(roi_features)
attr_scores = self.attr_score(roi_features)
return scores, attr_scores, proposal_deltas
else:
return scores, proposal_deltas
class GeneralizedRCNN(nn.Module):
def __init__(self, cfg):
super().__init__()
self.device = torch.device(cfg.MODEL.DEVICE)
self.backbone = build_backbone(cfg)
self.proposal_generator = RPN(cfg, self.backbone.output_shape())
self.roi_heads = Res5ROIHeads(cfg, self.backbone.output_shape())
self.roi_outputs = ROIOutputs(cfg)
self.to(self.device)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
config = kwargs.pop("config", None)
state_dict = kwargs.pop("state_dict", None)
cache_dir = kwargs.pop("cache_dir", None)
from_tf = kwargs.pop("from_tf", False)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", False)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
use_cdn = kwargs.pop("use_cdn", True)
# Load config if we don't provide a configuration
if not isinstance(config, Config):
config_path = config if config is not None else pretrained_model_name_or_path
# try:
config = Config.from_pretrained(
config_path,
cache_dir=cache_dir,
force_download=force_download,
resume_download=resume_download,
proxies=proxies,
local_files_only=local_files_only,
)
# Load model
if pretrained_model_name_or_path is not None:
if os.path.isdir(pretrained_model_name_or_path):
if os.path.isfile(os.path.join(pretrained_model_name_or_path, WEIGHTS_NAME)):
# Load from a PyTorch checkpoint
archive_file = os.path.join(pretrained_model_name_or_path, WEIGHTS_NAME)
else:
raise EnvironmentError(
"Error no file named {} found in directory {} ".format(
WEIGHTS_NAME,
pretrained_model_name_or_path,
)
)
elif os.path.isfile(pretrained_model_name_or_path) or is_remote_url(pretrained_model_name_or_path):
archive_file = pretrained_model_name_or_path
elif os.path.isfile(pretrained_model_name_or_path + ".index"):
assert (
from_tf
), "We found a TensorFlow checkpoint at {}, please set from_tf to True to load from this checkpoint".format(
pretrained_model_name_or_path + ".index"
)
archive_file = pretrained_model_name_or_path + ".index"
else:
archive_file = hf_bucket_url(
pretrained_model_name_or_path,
filename=WEIGHTS_NAME,
use_cdn=use_cdn,
)
try:
# Load from URL or cache if already cached
resolved_archive_file = cached_path(
archive_file,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
local_files_only=local_files_only,
)
if resolved_archive_file is None:
raise EnvironmentError
except EnvironmentError:
msg = f"Can't load weights for '{pretrained_model_name_or_path}'."
raise EnvironmentError(msg)
if resolved_archive_file == archive_file:
print("loading weights file {}".format(archive_file))
else:
print("loading weights file {} from cache at {}".format(archive_file, resolved_archive_file))
else:
resolved_archive_file = None
# Instantiate model.
model = cls(config)
if state_dict is None:
try:
try:
state_dict = torch.load(resolved_archive_file, map_location="cpu")
except Exception:
state_dict = load_checkpoint(resolved_archive_file)
except Exception:
raise OSError(
"Unable to load weights from pytorch checkpoint file. "
"If you tried to load a PyTorch model from a TF 2.0 checkpoint, please set from_tf=True. "
)
missing_keys = []
unexpected_keys = []
error_msgs = []
# Convert old format to new format if needed from a PyTorch state_dict
old_keys = []
new_keys = []
for key in state_dict.keys():
new_key = None
if "gamma" in key:
new_key = key.replace("gamma", "weight")
if "beta" in key:
new_key = key.replace("beta", "bias")
if new_key:
old_keys.append(key)
new_keys.append(new_key)
for old_key, new_key in zip(old_keys, new_keys):
state_dict[new_key] = state_dict.pop(old_key)
# copy state_dict so _load_from_state_dict can modify it
metadata = getattr(state_dict, "_metadata", None)
state_dict = state_dict.copy()
if metadata is not None:
state_dict._metadata = metadata
model_to_load = model
model_to_load.load_state_dict(state_dict)
if model.__class__.__name__ != model_to_load.__class__.__name__:
base_model_state_dict = model_to_load.state_dict().keys()
head_model_state_dict_without_base_prefix = [
key.split(cls.base_model_prefix + ".")[-1] for key in model.state_dict().keys()
]
missing_keys.extend(head_model_state_dict_without_base_prefix - base_model_state_dict)
if len(unexpected_keys) > 0:
print(
f"Some weights of the model checkpoint at {pretrained_model_name_or_path} were not used when "
f"initializing {model.__class__.__name__}: {unexpected_keys}\n"
f"- This IS expected if you are initializing {model.__class__.__name__} from the checkpoint of a model trained on another task "
f"or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).\n"
f"- This IS NOT expected if you are initializing {model.__class__.__name__} from the checkpoint of a model that you expect "
f"to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model)."
)
else:
print(f"All model checkpoint weights were used when initializing {model.__class__.__name__}.\n")
if len(missing_keys) > 0:
print(
f"Some weights of {model.__class__.__name__} were not initialized from the model checkpoint at {pretrained_model_name_or_path} "
f"and are newly initialized: {missing_keys}\n"
f"You should probably TRAIN this model on a down-stream task to be able to use it for predictions and inference."
)
else:
print(
f"All the weights of {model.__class__.__name__} were initialized from the model checkpoint at {pretrained_model_name_or_path}.\n"
f"If your task is similar to the task the model of the checkpoint was trained on, "
f"you can already use {model.__class__.__name__} for predictions without further training."
)
if len(error_msgs) > 0:
raise RuntimeError(
"Error(s) in loading state_dict for {}:\n\t{}".format(
model.__class__.__name__, "\n\t".join(error_msgs)
)
)
# Set model in evaluation mode to deactivate DropOut modules by default
model.eval()
return model
def forward(
self,
images,
image_shapes,
gt_boxes=None,
proposals=None,
scales_yx=None,
**kwargs,
):
"""
kwargs:
max_detections (int), return_tensors {"np", "pt", None}, padding {None,
"max_detections"}, pad_value (int), location = {"cuda", "cpu"}
"""
if self.training:
raise NotImplementedError()
return self.inference(
images=images,
image_shapes=image_shapes,
gt_boxes=gt_boxes,
proposals=proposals,
scales_yx=scales_yx,
**kwargs,
)
@torch.no_grad()
def inference(
self,
images,
image_shapes,
gt_boxes=None,
proposals=None,
scales_yx=None,
**kwargs,
):
# run images through backbone
original_sizes = image_shapes * scales_yx
features = self.backbone(images)
# generate proposals if none are available
if proposals is None:
proposal_boxes, _ = self.proposal_generator(images, image_shapes, features, gt_boxes)
else:
assert proposals is not None
# pool object features from either gt_boxes, or from proposals
obj_logits, attr_logits, box_deltas, feature_pooled = self.roi_heads(features, proposal_boxes, gt_boxes)
# prepare FRCNN Outputs and select top proposals
boxes, classes, class_probs, attrs, attr_probs, roi_features = self.roi_outputs(
obj_logits=obj_logits,
attr_logits=attr_logits,
box_deltas=box_deltas,
pred_boxes=proposal_boxes,
features=feature_pooled,
sizes=image_shapes,
scales=scales_yx,
)
# will we pad???
subset_kwargs = {
"max_detections": kwargs.get("max_detections", None),
"return_tensors": kwargs.get("return_tensors", None),
"pad_value": kwargs.get("pad_value", 0),
"padding": kwargs.get("padding", None),
}
preds_per_image = torch.tensor([p.size(0) for p in boxes])
boxes = pad_list_tensors(boxes, preds_per_image, **subset_kwargs)
classes = pad_list_tensors(classes, preds_per_image, **subset_kwargs)
class_probs = pad_list_tensors(class_probs, preds_per_image, **subset_kwargs)
attrs = pad_list_tensors(attrs, preds_per_image, **subset_kwargs)
attr_probs = pad_list_tensors(attr_probs, preds_per_image, **subset_kwargs)
roi_features = pad_list_tensors(roi_features, preds_per_image, **subset_kwargs)
subset_kwargs["padding"] = None
preds_per_image = pad_list_tensors(preds_per_image, None, **subset_kwargs)
sizes = pad_list_tensors(image_shapes, None, **subset_kwargs)
normalized_boxes = norm_box(boxes, original_sizes)
return OrderedDict(
{
"obj_ids": classes,
"obj_probs": class_probs,
"attr_ids": attrs,
"attr_probs": attr_probs,
"boxes": boxes,
"sizes": sizes,
"preds_per_image": preds_per_image,
"roi_features": roi_features,
"normalized_boxes": normalized_boxes,
}
)
| 73,726 | 37.359521 | 152 | py |
robust-transformers | robust-transformers-main/examples/research_projects/lxmert/extracting_data.py | import getopt
import json
import os
# import numpy as np
import sys
from collections import OrderedDict
import datasets
import numpy as np
import torch
from modeling_frcnn import GeneralizedRCNN
from processing_image import Preprocess
from utils import Config
"""
USAGE:
``python extracting_data.py -i <img_dir> -o <dataset_file>.datasets <batch_size>``
"""
TEST = False
CONFIG = Config.from_pretrained("unc-nlp/frcnn-vg-finetuned")
DEFAULT_SCHEMA = datasets.Features(
OrderedDict(
{
"attr_ids": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"attr_probs": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"boxes": datasets.Array2D((CONFIG.MAX_DETECTIONS, 4), dtype="float32"),
"img_id": datasets.Value("int32"),
"obj_ids": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"obj_probs": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"roi_features": datasets.Array2D((CONFIG.MAX_DETECTIONS, 2048), dtype="float32"),
"sizes": datasets.Sequence(length=2, feature=datasets.Value("float32")),
"preds_per_image": datasets.Value(dtype="int32"),
}
)
)
class Extract:
def __init__(self, argv=sys.argv[1:]):
inputdir = None
outputfile = None
subset_list = None
batch_size = 1
opts, args = getopt.getopt(argv, "i:o:b:s", ["inputdir=", "outfile=", "batch_size=", "subset_list="])
for opt, arg in opts:
if opt in ("-i", "--inputdir"):
inputdir = arg
elif opt in ("-o", "--outfile"):
outputfile = arg
elif opt in ("-b", "--batch_size"):
batch_size = int(arg)
elif opt in ("-s", "--subset_list"):
subset_list = arg
assert inputdir is not None # and os.path.isdir(inputdir), f"{inputdir}"
assert outputfile is not None and not os.path.isfile(outputfile), f"{outputfile}"
if subset_list is not None:
with open(os.path.realpath(subset_list)) as f:
self.subset_list = set(map(lambda x: self._vqa_file_split()[0], tryload(f)))
else:
self.subset_list = None
self.config = CONFIG
if torch.cuda.is_available():
self.config.model.device = "cuda"
self.inputdir = os.path.realpath(inputdir)
self.outputfile = os.path.realpath(outputfile)
self.preprocess = Preprocess(self.config)
self.model = GeneralizedRCNN.from_pretrained("unc-nlp/frcnn-vg-finetuned", config=self.config)
self.batch = batch_size if batch_size != 0 else 1
self.schema = DEFAULT_SCHEMA
def _vqa_file_split(self, file):
img_id = int(file.split(".")[0].split("_")[-1])
filepath = os.path.join(self.inputdir, file)
return (img_id, filepath)
@property
def file_generator(self):
batch = []
for i, file in enumerate(os.listdir(self.inputdir)):
if self.subset_list is not None and i not in self.subset_list:
continue
batch.append(self._vqa_file_split(file))
if len(batch) == self.batch:
temp = batch
batch = []
yield list(map(list, zip(*temp)))
for i in range(1):
yield list(map(list, zip(*batch)))
def __call__(self):
# make writer
if not TEST:
writer = datasets.ArrowWriter(features=self.schema, path=self.outputfile)
# do file generator
for i, (img_ids, filepaths) in enumerate(self.file_generator):
images, sizes, scales_yx = self.preprocess(filepaths)
output_dict = self.model(
images,
sizes,
scales_yx=scales_yx,
padding="max_detections",
max_detections=self.config.MAX_DETECTIONS,
pad_value=0,
return_tensors="np",
location="cpu",
)
output_dict["boxes"] = output_dict.pop("normalized_boxes")
if not TEST:
output_dict["img_id"] = np.array(img_ids)
batch = self.schema.encode_batch(output_dict)
writer.write_batch(batch)
if TEST:
break
# finalizer the writer
if not TEST:
num_examples, num_bytes = writer.finalize()
print(f"Success! You wrote {num_examples} entry(s) and {num_bytes >> 20} mb")
def tryload(stream):
try:
data = json.load(stream)
try:
data = list(data.keys())
except Exception:
data = [d["img_id"] for d in data]
except Exception:
try:
data = eval(stream.read())
except Exception:
data = stream.read().split("\n")
return data
if __name__ == "__main__":
extract = Extract(sys.argv[1:])
extract()
if not TEST:
dataset = datasets.Dataset.from_file(extract.outputfile)
# wala!
# print(np.array(dataset[0:2]["roi_features"]).shape)
| 5,254 | 34.033333 | 109 | py |
robust-transformers | robust-transformers-main/examples/research_projects/lxmert/utils.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal, Huggingface team :)
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import copy
import fnmatch
import json
import os
import pickle as pkl
import shutil
import sys
import tarfile
import tempfile
from collections import OrderedDict
from contextlib import contextmanager
from functools import partial
from hashlib import sha256
from io import BytesIO
from pathlib import Path
from urllib.parse import urlparse
from zipfile import ZipFile, is_zipfile
import numpy as np
from PIL import Image
from tqdm.auto import tqdm
import cv2
import requests
import wget
from filelock import FileLock
from yaml import Loader, dump, load
try:
import torch
_torch_available = True
except ImportError:
_torch_available = False
try:
from torch.hub import _get_torch_home
torch_cache_home = _get_torch_home()
except ImportError:
torch_cache_home = os.path.expanduser(
os.getenv("TORCH_HOME", os.path.join(os.getenv("XDG_CACHE_HOME", "~/.cache"), "torch"))
)
default_cache_path = os.path.join(torch_cache_home, "transformers")
CLOUDFRONT_DISTRIB_PREFIX = "https://cdn.huggingface.co"
S3_BUCKET_PREFIX = "https://s3.amazonaws.com/models.huggingface.co/bert"
PATH = "/".join(str(Path(__file__).resolve()).split("/")[:-1])
CONFIG = os.path.join(PATH, "config.yaml")
ATTRIBUTES = os.path.join(PATH, "attributes.txt")
OBJECTS = os.path.join(PATH, "objects.txt")
PYTORCH_PRETRAINED_BERT_CACHE = os.getenv("PYTORCH_PRETRAINED_BERT_CACHE", default_cache_path)
PYTORCH_TRANSFORMERS_CACHE = os.getenv("PYTORCH_TRANSFORMERS_CACHE", PYTORCH_PRETRAINED_BERT_CACHE)
TRANSFORMERS_CACHE = os.getenv("TRANSFORMERS_CACHE", PYTORCH_TRANSFORMERS_CACHE)
WEIGHTS_NAME = "pytorch_model.bin"
CONFIG_NAME = "config.yaml"
def load_labels(objs=OBJECTS, attrs=ATTRIBUTES):
vg_classes = []
with open(objs) as f:
for object in f.readlines():
vg_classes.append(object.split(",")[0].lower().strip())
vg_attrs = []
with open(attrs) as f:
for object in f.readlines():
vg_attrs.append(object.split(",")[0].lower().strip())
return vg_classes, vg_attrs
def load_checkpoint(ckp):
r = OrderedDict()
with open(ckp, "rb") as f:
ckp = pkl.load(f)["model"]
for k in copy.deepcopy(list(ckp.keys())):
v = ckp.pop(k)
if isinstance(v, np.ndarray):
v = torch.tensor(v)
else:
assert isinstance(v, torch.tensor), type(v)
r[k] = v
return r
class Config:
_pointer = {}
def __init__(self, dictionary: dict, name: str = "root", level=0):
self._name = name
self._level = level
d = {}
for k, v in dictionary.items():
if v is None:
raise ValueError()
k = copy.deepcopy(k)
v = copy.deepcopy(v)
if isinstance(v, dict):
v = Config(v, name=k, level=level + 1)
d[k] = v
setattr(self, k, v)
self._pointer = d
def __repr__(self):
return str(list((self._pointer.keys())))
def __setattr__(self, key, val):
self.__dict__[key] = val
self.__dict__[key.upper()] = val
levels = key.split(".")
last_level = len(levels) - 1
pointer = self._pointer
if len(levels) > 1:
for i, l in enumerate(levels):
if hasattr(self, l) and isinstance(getattr(self, l), Config):
setattr(getattr(self, l), ".".join(levels[i:]), val)
if l == last_level:
pointer[l] = val
else:
pointer = pointer[l]
def to_dict(self):
return self._pointer
def dump_yaml(self, data, file_name):
with open(f"{file_name}", "w") as stream:
dump(data, stream)
def dump_json(self, data, file_name):
with open(f"{file_name}", "w") as stream:
json.dump(data, stream)
@staticmethod
def load_yaml(config):
with open(config) as stream:
data = load(stream, Loader=Loader)
return data
def __str__(self):
t = " "
if self._name != "root":
r = f"{t * (self._level-1)}{self._name}:\n"
else:
r = ""
level = self._level
for i, (k, v) in enumerate(self._pointer.items()):
if isinstance(v, Config):
r += f"{t * (self._level)}{v}\n"
self._level += 1
else:
r += f"{t * (self._level)}{k}: {v} ({type(v).__name__})\n"
self._level = level
return r[:-1]
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: str, **kwargs):
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
return cls(config_dict)
@classmethod
def get_config_dict(cls, pretrained_model_name_or_path: str, **kwargs):
cache_dir = kwargs.pop("cache_dir", None)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", False)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
if os.path.isdir(pretrained_model_name_or_path):
config_file = os.path.join(pretrained_model_name_or_path, CONFIG_NAME)
elif os.path.isfile(pretrained_model_name_or_path) or is_remote_url(pretrained_model_name_or_path):
config_file = pretrained_model_name_or_path
else:
config_file = hf_bucket_url(pretrained_model_name_or_path, filename=CONFIG_NAME, use_cdn=False)
try:
# Load from URL or cache if already cached
resolved_config_file = cached_path(
config_file,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
local_files_only=local_files_only,
)
# Load config dict
if resolved_config_file is None:
raise EnvironmentError
config_file = Config.load_yaml(resolved_config_file)
except EnvironmentError:
msg = "Can't load config for"
raise EnvironmentError(msg)
if resolved_config_file == config_file:
print("loading configuration file from path")
else:
print("loading configuration file cache")
return Config.load_yaml(resolved_config_file), kwargs
# quick compare tensors
def compare(in_tensor):
out_tensor = torch.load("dump.pt", map_location=in_tensor.device)
n1 = in_tensor.numpy()
n2 = out_tensor.numpy()[0]
print(n1.shape, n1[0, 0, :5])
print(n2.shape, n2[0, 0, :5])
assert np.allclose(
n1, n2, rtol=0.01, atol=0.1
), f"{sum([1 for x in np.isclose(n1, n2, rtol=0.01, atol=0.1).flatten() if x == False])/len(n1.flatten())*100:.4f} % element-wise mismatch"
raise Exception("tensors are all good")
# Hugging face functions below
def is_remote_url(url_or_filename):
parsed = urlparse(url_or_filename)
return parsed.scheme in ("http", "https")
def hf_bucket_url(model_id: str, filename: str, use_cdn=True) -> str:
endpoint = CLOUDFRONT_DISTRIB_PREFIX if use_cdn else S3_BUCKET_PREFIX
legacy_format = "/" not in model_id
if legacy_format:
return f"{endpoint}/{model_id}-{filename}"
else:
return f"{endpoint}/{model_id}/{filename}"
def http_get(
url,
temp_file,
proxies=None,
resume_size=0,
user_agent=None,
):
ua = "python/{}".format(sys.version.split()[0])
if _torch_available:
ua += "; torch/{}".format(torch.__version__)
if isinstance(user_agent, dict):
ua += "; " + "; ".join("{}/{}".format(k, v) for k, v in user_agent.items())
elif isinstance(user_agent, str):
ua += "; " + user_agent
headers = {"user-agent": ua}
if resume_size > 0:
headers["Range"] = "bytes=%d-" % (resume_size,)
response = requests.get(url, stream=True, proxies=proxies, headers=headers)
if response.status_code == 416: # Range not satisfiable
return
content_length = response.headers.get("Content-Length")
total = resume_size + int(content_length) if content_length is not None else None
progress = tqdm(
unit="B",
unit_scale=True,
total=total,
initial=resume_size,
desc="Downloading",
)
for chunk in response.iter_content(chunk_size=1024):
if chunk: # filter out keep-alive new chunks
progress.update(len(chunk))
temp_file.write(chunk)
progress.close()
def get_from_cache(
url,
cache_dir=None,
force_download=False,
proxies=None,
etag_timeout=10,
resume_download=False,
user_agent=None,
local_files_only=False,
):
if cache_dir is None:
cache_dir = TRANSFORMERS_CACHE
if isinstance(cache_dir, Path):
cache_dir = str(cache_dir)
os.makedirs(cache_dir, exist_ok=True)
etag = None
if not local_files_only:
try:
response = requests.head(url, allow_redirects=True, proxies=proxies, timeout=etag_timeout)
if response.status_code == 200:
etag = response.headers.get("ETag")
except (EnvironmentError, requests.exceptions.Timeout):
# etag is already None
pass
filename = url_to_filename(url, etag)
# get cache path to put the file
cache_path = os.path.join(cache_dir, filename)
# etag is None = we don't have a connection, or url doesn't exist, or is otherwise inaccessible.
# try to get the last downloaded one
if etag is None:
if os.path.exists(cache_path):
return cache_path
else:
matching_files = [
file
for file in fnmatch.filter(os.listdir(cache_dir), filename + ".*")
if not file.endswith(".json") and not file.endswith(".lock")
]
if len(matching_files) > 0:
return os.path.join(cache_dir, matching_files[-1])
else:
# If files cannot be found and local_files_only=True,
# the models might've been found if local_files_only=False
# Notify the user about that
if local_files_only:
raise ValueError(
"Cannot find the requested files in the cached path and outgoing traffic has been"
" disabled. To enable model look-ups and downloads online, set 'local_files_only'"
" to False."
)
return None
# From now on, etag is not None.
if os.path.exists(cache_path) and not force_download:
return cache_path
# Prevent parallel downloads of the same file with a lock.
lock_path = cache_path + ".lock"
with FileLock(lock_path):
# If the download just completed while the lock was activated.
if os.path.exists(cache_path) and not force_download:
# Even if returning early like here, the lock will be released.
return cache_path
if resume_download:
incomplete_path = cache_path + ".incomplete"
@contextmanager
def _resumable_file_manager():
with open(incomplete_path, "a+b") as f:
yield f
temp_file_manager = _resumable_file_manager
if os.path.exists(incomplete_path):
resume_size = os.stat(incomplete_path).st_size
else:
resume_size = 0
else:
temp_file_manager = partial(tempfile.NamedTemporaryFile, dir=cache_dir, delete=False)
resume_size = 0
# Download to temporary file, then copy to cache dir once finished.
# Otherwise you get corrupt cache entries if the download gets interrupted.
with temp_file_manager() as temp_file:
print(
"%s not found in cache or force_download set to True, downloading to %s",
url,
temp_file.name,
)
http_get(
url,
temp_file,
proxies=proxies,
resume_size=resume_size,
user_agent=user_agent,
)
os.replace(temp_file.name, cache_path)
meta = {"url": url, "etag": etag}
meta_path = cache_path + ".json"
with open(meta_path, "w") as meta_file:
json.dump(meta, meta_file)
return cache_path
def url_to_filename(url, etag=None):
url_bytes = url.encode("utf-8")
url_hash = sha256(url_bytes)
filename = url_hash.hexdigest()
if etag:
etag_bytes = etag.encode("utf-8")
etag_hash = sha256(etag_bytes)
filename += "." + etag_hash.hexdigest()
if url.endswith(".h5"):
filename += ".h5"
return filename
def cached_path(
url_or_filename,
cache_dir=None,
force_download=False,
proxies=None,
resume_download=False,
user_agent=None,
extract_compressed_file=False,
force_extract=False,
local_files_only=False,
):
if cache_dir is None:
cache_dir = TRANSFORMERS_CACHE
if isinstance(url_or_filename, Path):
url_or_filename = str(url_or_filename)
if isinstance(cache_dir, Path):
cache_dir = str(cache_dir)
if is_remote_url(url_or_filename):
# URL, so get it from the cache (downloading if necessary)
output_path = get_from_cache(
url_or_filename,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
user_agent=user_agent,
local_files_only=local_files_only,
)
elif os.path.exists(url_or_filename):
# File, and it exists.
output_path = url_or_filename
elif urlparse(url_or_filename).scheme == "":
# File, but it doesn't exist.
raise EnvironmentError("file {} not found".format(url_or_filename))
else:
# Something unknown
raise ValueError("unable to parse {} as a URL or as a local path".format(url_or_filename))
if extract_compressed_file:
if not is_zipfile(output_path) and not tarfile.is_tarfile(output_path):
return output_path
# Path where we extract compressed archives
# We avoid '.' in dir name and add "-extracted" at the end: "./model.zip" => "./model-zip-extracted/"
output_dir, output_file = os.path.split(output_path)
output_extract_dir_name = output_file.replace(".", "-") + "-extracted"
output_path_extracted = os.path.join(output_dir, output_extract_dir_name)
if os.path.isdir(output_path_extracted) and os.listdir(output_path_extracted) and not force_extract:
return output_path_extracted
# Prevent parallel extractions
lock_path = output_path + ".lock"
with FileLock(lock_path):
shutil.rmtree(output_path_extracted, ignore_errors=True)
os.makedirs(output_path_extracted)
if is_zipfile(output_path):
with ZipFile(output_path, "r") as zip_file:
zip_file.extractall(output_path_extracted)
zip_file.close()
elif tarfile.is_tarfile(output_path):
tar_file = tarfile.open(output_path)
tar_file.extractall(output_path_extracted)
tar_file.close()
else:
raise EnvironmentError("Archive format of {} could not be identified".format(output_path))
return output_path_extracted
return output_path
def get_data(query, delim=","):
assert isinstance(query, str)
if os.path.isfile(query):
with open(query) as f:
data = eval(f.read())
else:
req = requests.get(query)
try:
data = requests.json()
except Exception:
data = req.content.decode()
assert data is not None, "could not connect"
try:
data = eval(data)
except Exception:
data = data.split("\n")
req.close()
return data
def get_image_from_url(url):
response = requests.get(url)
img = np.array(Image.open(BytesIO(response.content)))
return img
# to load legacy frcnn checkpoint from detectron
def load_frcnn_pkl_from_url(url):
fn = url.split("/")[-1]
if fn not in os.listdir(os.getcwd()):
wget.download(url)
with open(fn, "rb") as stream:
weights = pkl.load(stream)
model = weights.pop("model")
new = {}
for k, v in model.items():
new[k] = torch.from_numpy(v)
if "running_var" in k:
zero = torch.tensor([0])
k2 = k.replace("running_var", "num_batches_tracked")
new[k2] = zero
return new
def get_demo_path():
print(f"{os.path.abspath(os.path.join(PATH, os.pardir))}/demo.ipynb")
def img_tensorize(im, input_format="RGB"):
assert isinstance(im, str)
if os.path.isfile(im):
img = cv2.imread(im)
else:
img = get_image_from_url(im)
assert img is not None, f"could not connect to: {im}"
img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
if input_format == "RGB":
img = img[:, :, ::-1]
return img
def chunk(images, batch=1):
return (images[i : i + batch] for i in range(0, len(images), batch))
| 18,199 | 31.5 | 143 | py |
robust-transformers | robust-transformers-main/examples/research_projects/lxmert/visualizing_image.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import colorsys
import io
import matplotlib as mpl
import matplotlib.colors as mplc
import matplotlib.figure as mplfigure
import numpy as np
import torch
from matplotlib.backends.backend_agg import FigureCanvasAgg
import cv2
from utils import img_tensorize
_SMALL_OBJ = 1000
class SingleImageViz:
def __init__(
self,
img,
scale=1.2,
edgecolor="g",
alpha=0.5,
linestyle="-",
saveas="test_out.jpg",
rgb=True,
pynb=False,
id2obj=None,
id2attr=None,
pad=0.7,
):
"""
img: an RGB image of shape (H, W, 3).
"""
if isinstance(img, torch.Tensor):
img = img.numpy().astype("np.uint8")
if isinstance(img, str):
img = img_tensorize(img)
assert isinstance(img, np.ndarray)
width, height = img.shape[1], img.shape[0]
fig = mplfigure.Figure(frameon=False)
dpi = fig.get_dpi()
width_in = (width * scale + 1e-2) / dpi
height_in = (height * scale + 1e-2) / dpi
fig.set_size_inches(width_in, height_in)
ax = fig.add_axes([0.0, 0.0, 1.0, 1.0])
ax.axis("off")
ax.set_xlim(0.0, width)
ax.set_ylim(height)
self.saveas = saveas
self.rgb = rgb
self.pynb = pynb
self.img = img
self.edgecolor = edgecolor
self.alpha = 0.5
self.linestyle = linestyle
self.font_size = int(np.sqrt(min(height, width)) * scale // 3)
self.width = width
self.height = height
self.scale = scale
self.fig = fig
self.ax = ax
self.pad = pad
self.id2obj = id2obj
self.id2attr = id2attr
self.canvas = FigureCanvasAgg(fig)
def add_box(self, box, color=None):
if color is None:
color = self.edgecolor
(x0, y0, x1, y1) = box
width = x1 - x0
height = y1 - y0
self.ax.add_patch(
mpl.patches.Rectangle(
(x0, y0),
width,
height,
fill=False,
edgecolor=color,
linewidth=self.font_size // 3,
alpha=self.alpha,
linestyle=self.linestyle,
)
)
def draw_boxes(self, boxes, obj_ids=None, obj_scores=None, attr_ids=None, attr_scores=None):
if len(boxes.shape) > 2:
boxes = boxes[0]
if len(obj_ids.shape) > 1:
obj_ids = obj_ids[0]
if len(obj_scores.shape) > 1:
obj_scores = obj_scores[0]
if len(attr_ids.shape) > 1:
attr_ids = attr_ids[0]
if len(attr_scores.shape) > 1:
attr_scores = attr_scores[0]
if isinstance(boxes, torch.Tensor):
boxes = boxes.numpy()
if isinstance(boxes, list):
boxes = np.array(boxes)
assert isinstance(boxes, np.ndarray)
areas = np.prod(boxes[:, 2:] - boxes[:, :2], axis=1)
sorted_idxs = np.argsort(-areas).tolist()
boxes = boxes[sorted_idxs] if boxes is not None else None
obj_ids = obj_ids[sorted_idxs] if obj_ids is not None else None
obj_scores = obj_scores[sorted_idxs] if obj_scores is not None else None
attr_ids = attr_ids[sorted_idxs] if attr_ids is not None else None
attr_scores = attr_scores[sorted_idxs] if attr_scores is not None else None
assigned_colors = [self._random_color(maximum=1) for _ in range(len(boxes))]
assigned_colors = [assigned_colors[idx] for idx in sorted_idxs]
if obj_ids is not None:
labels = self._create_text_labels_attr(obj_ids, obj_scores, attr_ids, attr_scores)
for i in range(len(boxes)):
color = assigned_colors[i]
self.add_box(boxes[i], color)
self.draw_labels(labels[i], boxes[i], color)
def draw_labels(self, label, box, color):
x0, y0, x1, y1 = box
text_pos = (x0, y0)
instance_area = (y1 - y0) * (x1 - x0)
small = _SMALL_OBJ * self.scale
if instance_area < small or y1 - y0 < 40 * self.scale:
if y1 >= self.height - 5:
text_pos = (x1, y0)
else:
text_pos = (x0, y1)
height_ratio = (y1 - y0) / np.sqrt(self.height * self.width)
lighter_color = self._change_color_brightness(color, brightness_factor=0.7)
font_size = np.clip((height_ratio - 0.02) / 0.08 + 1, 1.2, 2)
font_size *= 0.75 * self.font_size
self.draw_text(
text=label,
position=text_pos,
color=lighter_color,
)
def draw_text(
self,
text,
position,
color="g",
ha="left",
):
rotation = 0
font_size = self.font_size
color = np.maximum(list(mplc.to_rgb(color)), 0.2)
color[np.argmax(color)] = max(0.8, np.max(color))
bbox = {
"facecolor": "black",
"alpha": self.alpha,
"pad": self.pad,
"edgecolor": "none",
}
x, y = position
self.ax.text(
x,
y,
text,
size=font_size * self.scale,
family="sans-serif",
bbox=bbox,
verticalalignment="top",
horizontalalignment=ha,
color=color,
zorder=10,
rotation=rotation,
)
def save(self, saveas=None):
if saveas is None:
saveas = self.saveas
if saveas.lower().endswith(".jpg") or saveas.lower().endswith(".png"):
cv2.imwrite(
saveas,
self._get_buffer()[:, :, ::-1],
)
else:
self.fig.savefig(saveas)
def _create_text_labels_attr(self, classes, scores, attr_classes, attr_scores):
labels = [self.id2obj[i] for i in classes]
attr_labels = [self.id2attr[i] for i in attr_classes]
labels = [
f"{label} {score:.2f} {attr} {attr_score:.2f}"
for label, score, attr, attr_score in zip(labels, scores, attr_labels, attr_scores)
]
return labels
def _create_text_labels(self, classes, scores):
labels = [self.id2obj[i] for i in classes]
if scores is not None:
if labels is None:
labels = ["{:.0f}%".format(s * 100) for s in scores]
else:
labels = ["{} {:.0f}%".format(li, s * 100) for li, s in zip(labels, scores)]
return labels
def _random_color(self, maximum=255):
idx = np.random.randint(0, len(_COLORS))
ret = _COLORS[idx] * maximum
if not self.rgb:
ret = ret[::-1]
return ret
def _get_buffer(self):
if not self.pynb:
s, (width, height) = self.canvas.print_to_buffer()
if (width, height) != (self.width, self.height):
img = cv2.resize(self.img, (width, height))
else:
img = self.img
else:
buf = io.BytesIO() # works for cairo backend
self.canvas.print_rgba(buf)
width, height = self.width, self.height
s = buf.getvalue()
img = self.img
buffer = np.frombuffer(s, dtype="uint8")
img_rgba = buffer.reshape(height, width, 4)
rgb, alpha = np.split(img_rgba, [3], axis=2)
try:
import numexpr as ne # fuse them with numexpr
visualized_image = ne.evaluate("img * (1 - alpha / 255.0) + rgb * (alpha / 255.0)")
except ImportError:
alpha = alpha.astype("float32") / 255.0
visualized_image = img * (1 - alpha) + rgb * alpha
return visualized_image.astype("uint8")
def _change_color_brightness(self, color, brightness_factor):
assert brightness_factor >= -1.0 and brightness_factor <= 1.0
color = mplc.to_rgb(color)
polygon_color = colorsys.rgb_to_hls(*mplc.to_rgb(color))
modified_lightness = polygon_color[1] + (brightness_factor * polygon_color[1])
modified_lightness = 0.0 if modified_lightness < 0.0 else modified_lightness
modified_lightness = 1.0 if modified_lightness > 1.0 else modified_lightness
modified_color = colorsys.hls_to_rgb(polygon_color[0], modified_lightness, polygon_color[2])
return modified_color
# Color map
_COLORS = (
np.array(
[
0.000,
0.447,
0.741,
0.850,
0.325,
0.098,
0.929,
0.694,
0.125,
0.494,
0.184,
0.556,
0.466,
0.674,
0.188,
0.301,
0.745,
0.933,
0.635,
0.078,
0.184,
0.300,
0.300,
0.300,
0.600,
0.600,
0.600,
1.000,
0.000,
0.000,
1.000,
0.500,
0.000,
0.749,
0.749,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
1.000,
0.667,
0.000,
1.000,
0.333,
0.333,
0.000,
0.333,
0.667,
0.000,
0.333,
1.000,
0.000,
0.667,
0.333,
0.000,
0.667,
0.667,
0.000,
0.667,
1.000,
0.000,
1.000,
0.333,
0.000,
1.000,
0.667,
0.000,
1.000,
1.000,
0.000,
0.000,
0.333,
0.500,
0.000,
0.667,
0.500,
0.000,
1.000,
0.500,
0.333,
0.000,
0.500,
0.333,
0.333,
0.500,
0.333,
0.667,
0.500,
0.333,
1.000,
0.500,
0.667,
0.000,
0.500,
0.667,
0.333,
0.500,
0.667,
0.667,
0.500,
0.667,
1.000,
0.500,
1.000,
0.000,
0.500,
1.000,
0.333,
0.500,
1.000,
0.667,
0.500,
1.000,
1.000,
0.500,
0.000,
0.333,
1.000,
0.000,
0.667,
1.000,
0.000,
1.000,
1.000,
0.333,
0.000,
1.000,
0.333,
0.333,
1.000,
0.333,
0.667,
1.000,
0.333,
1.000,
1.000,
0.667,
0.000,
1.000,
0.667,
0.333,
1.000,
0.667,
0.667,
1.000,
0.667,
1.000,
1.000,
1.000,
0.000,
1.000,
1.000,
0.333,
1.000,
1.000,
0.667,
1.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.167,
0.000,
0.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.167,
0.000,
0.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.143,
0.143,
0.143,
0.857,
0.857,
0.857,
1.000,
1.000,
1.000,
]
)
.astype(np.float32)
.reshape(-1, 3)
)
| 13,420 | 25.842 | 100 | py |
robust-transformers | robust-transformers-main/examples/research_projects/lxmert/processing_image.py | """
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import sys
from typing import Tuple
import numpy as np
import torch
from PIL import Image
from torch import nn
from utils import img_tensorize
class ResizeShortestEdge:
def __init__(self, short_edge_length, max_size=sys.maxsize):
"""
Args:
short_edge_length (list[min, max])
max_size (int): maximum allowed longest edge length.
"""
self.interp_method = "bilinear"
self.max_size = max_size
self.short_edge_length = short_edge_length
def __call__(self, imgs):
img_augs = []
for img in imgs:
h, w = img.shape[:2]
# later: provide list and randomly choose index for resize
size = np.random.randint(self.short_edge_length[0], self.short_edge_length[1] + 1)
if size == 0:
return img
scale = size * 1.0 / min(h, w)
if h < w:
newh, neww = size, scale * w
else:
newh, neww = scale * h, size
if max(newh, neww) > self.max_size:
scale = self.max_size * 1.0 / max(newh, neww)
newh = newh * scale
neww = neww * scale
neww = int(neww + 0.5)
newh = int(newh + 0.5)
if img.dtype == np.uint8:
pil_image = Image.fromarray(img)
pil_image = pil_image.resize((neww, newh), Image.BILINEAR)
img = np.asarray(pil_image)
else:
img = img.permute(2, 0, 1).unsqueeze(0) # 3, 0, 1) # hw(c) -> nchw
img = nn.functional.interpolate(
img, (newh, neww), mode=self.interp_method, align_corners=False
).squeeze(0)
img_augs.append(img)
return img_augs
class Preprocess:
def __init__(self, cfg):
self.aug = ResizeShortestEdge([cfg.INPUT.MIN_SIZE_TEST, cfg.INPUT.MIN_SIZE_TEST], cfg.INPUT.MAX_SIZE_TEST)
self.input_format = cfg.INPUT.FORMAT
self.size_divisibility = cfg.SIZE_DIVISIBILITY
self.pad_value = cfg.PAD_VALUE
self.max_image_size = cfg.INPUT.MAX_SIZE_TEST
self.device = cfg.MODEL.DEVICE
self.pixel_std = torch.tensor(cfg.MODEL.PIXEL_STD).to(self.device).view(len(cfg.MODEL.PIXEL_STD), 1, 1)
self.pixel_mean = torch.tensor(cfg.MODEL.PIXEL_MEAN).to(self.device).view(len(cfg.MODEL.PIXEL_STD), 1, 1)
self.normalizer = lambda x: (x - self.pixel_mean) / self.pixel_std
def pad(self, images):
max_size = tuple(max(s) for s in zip(*[img.shape for img in images]))
image_sizes = [im.shape[-2:] for im in images]
images = [
nn.functional.pad(
im,
[0, max_size[-1] - size[1], 0, max_size[-2] - size[0]],
value=self.pad_value,
)
for size, im in zip(image_sizes, images)
]
return torch.stack(images), torch.tensor(image_sizes)
def __call__(self, images, single_image=False):
with torch.no_grad():
if not isinstance(images, list):
images = [images]
if single_image:
assert len(images) == 1
for i in range(len(images)):
if isinstance(images[i], torch.Tensor):
images.insert(i, images.pop(i).to(self.device).float())
elif not isinstance(images[i], torch.Tensor):
images.insert(
i,
torch.as_tensor(img_tensorize(images.pop(i), input_format=self.input_format))
.to(self.device)
.float(),
)
# resize smallest edge
raw_sizes = torch.tensor([im.shape[:2] for im in images])
images = self.aug(images)
# transpose images and convert to torch tensors
# images = [torch.as_tensor(i.astype("float32")).permute(2, 0, 1).to(self.device) for i in images]
# now normalize before pad to avoid useless arithmetic
images = [self.normalizer(x) for x in images]
# now pad them to do the following operations
images, sizes = self.pad(images)
# Normalize
if self.size_divisibility > 0:
raise NotImplementedError()
# pad
scales_yx = torch.true_divide(raw_sizes, sizes)
if single_image:
return images[0], sizes[0], scales_yx[0]
else:
return images, sizes, scales_yx
def _scale_box(boxes, scale_yx):
boxes[:, 0::2] *= scale_yx[:, 1]
boxes[:, 1::2] *= scale_yx[:, 0]
return boxes
def _clip_box(tensor, box_size: Tuple[int, int]):
assert torch.isfinite(tensor).all(), "Box tensor contains infinite or NaN!"
h, w = box_size
tensor[:, 0].clamp_(min=0, max=w)
tensor[:, 1].clamp_(min=0, max=h)
tensor[:, 2].clamp_(min=0, max=w)
tensor[:, 3].clamp_(min=0, max=h)
| 5,678 | 36.86 | 114 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/modeling_bertabs.py | # MIT License
# Copyright (c) 2019 Yang Liu and the HuggingFace team
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
import copy
import math
import numpy as np
import torch
from torch import nn
from torch.nn.init import xavier_uniform_
from configuration_bertabs import BertAbsConfig
from transformers import BertConfig, BertModel, PreTrainedModel
MAX_SIZE = 5000
BERTABS_FINETUNED_MODEL_ARCHIVE_LIST = [
"remi/bertabs-finetuned-cnndm-extractive-abstractive-summarization",
]
class BertAbsPreTrainedModel(PreTrainedModel):
config_class = BertAbsConfig
load_tf_weights = False
base_model_prefix = "bert"
class BertAbs(BertAbsPreTrainedModel):
def __init__(self, args, checkpoint=None, bert_extractive_checkpoint=None):
super().__init__(args)
self.args = args
self.bert = Bert()
# If pre-trained weights are passed for Bert, load these.
load_bert_pretrained_extractive = True if bert_extractive_checkpoint else False
if load_bert_pretrained_extractive:
self.bert.model.load_state_dict(
dict([(n[11:], p) for n, p in bert_extractive_checkpoint.items() if n.startswith("bert.model")]),
strict=True,
)
self.vocab_size = self.bert.model.config.vocab_size
if args.max_pos > 512:
my_pos_embeddings = nn.Embedding(args.max_pos, self.bert.model.config.hidden_size)
my_pos_embeddings.weight.data[:512] = self.bert.model.embeddings.position_embeddings.weight.data
my_pos_embeddings.weight.data[512:] = self.bert.model.embeddings.position_embeddings.weight.data[-1][
None, :
].repeat(args.max_pos - 512, 1)
self.bert.model.embeddings.position_embeddings = my_pos_embeddings
tgt_embeddings = nn.Embedding(self.vocab_size, self.bert.model.config.hidden_size, padding_idx=0)
tgt_embeddings.weight = copy.deepcopy(self.bert.model.embeddings.word_embeddings.weight)
self.decoder = TransformerDecoder(
self.args.dec_layers,
self.args.dec_hidden_size,
heads=self.args.dec_heads,
d_ff=self.args.dec_ff_size,
dropout=self.args.dec_dropout,
embeddings=tgt_embeddings,
vocab_size=self.vocab_size,
)
gen_func = nn.LogSoftmax(dim=-1)
self.generator = nn.Sequential(nn.Linear(args.dec_hidden_size, args.vocab_size), gen_func)
self.generator[0].weight = self.decoder.embeddings.weight
load_from_checkpoints = False if checkpoint is None else True
if load_from_checkpoints:
self.load_state_dict(checkpoint)
def init_weights(self):
for module in self.decoder.modules():
if isinstance(module, (nn.Linear, nn.Embedding)):
module.weight.data.normal_(mean=0.0, std=0.02)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
for p in self.generator.parameters():
if p.dim() > 1:
xavier_uniform_(p)
else:
p.data.zero_()
def forward(
self,
encoder_input_ids,
decoder_input_ids,
token_type_ids,
encoder_attention_mask,
decoder_attention_mask,
):
encoder_output = self.bert(
input_ids=encoder_input_ids,
token_type_ids=token_type_ids,
attention_mask=encoder_attention_mask,
)
encoder_hidden_states = encoder_output[0]
dec_state = self.decoder.init_decoder_state(encoder_input_ids, encoder_hidden_states)
decoder_outputs, _ = self.decoder(decoder_input_ids[:, :-1], encoder_hidden_states, dec_state)
return decoder_outputs
class Bert(nn.Module):
"""This class is not really necessary and should probably disappear."""
def __init__(self):
super().__init__()
config = BertConfig.from_pretrained("bert-base-uncased")
self.model = BertModel(config)
def forward(self, input_ids, attention_mask=None, token_type_ids=None, **kwargs):
self.eval()
with torch.no_grad():
encoder_outputs, _ = self.model(
input_ids, token_type_ids=token_type_ids, attention_mask=attention_mask, **kwargs
)
return encoder_outputs
class TransformerDecoder(nn.Module):
"""
The Transformer decoder from "Attention is All You Need".
Args:
num_layers (int): number of encoder layers.
d_model (int): size of the model
heads (int): number of heads
d_ff (int): size of the inner FF layer
dropout (float): dropout parameters
embeddings (:obj:`onmt.modules.Embeddings`):
embeddings to use, should have positional encodings
attn_type (str): if using a separate copy attention
"""
def __init__(self, num_layers, d_model, heads, d_ff, dropout, embeddings, vocab_size):
super().__init__()
# Basic attributes.
self.decoder_type = "transformer"
self.num_layers = num_layers
self.embeddings = embeddings
self.pos_emb = PositionalEncoding(dropout, self.embeddings.embedding_dim)
# Build TransformerDecoder.
self.transformer_layers = nn.ModuleList(
[TransformerDecoderLayer(d_model, heads, d_ff, dropout) for _ in range(num_layers)]
)
self.layer_norm = nn.LayerNorm(d_model, eps=1e-6)
# forward(input_ids, attention_mask, encoder_hidden_states, encoder_attention_mask)
# def forward(self, input_ids, state, attention_mask=None, memory_lengths=None,
# step=None, cache=None, encoder_attention_mask=None, encoder_hidden_states=None, memory_masks=None):
def forward(
self,
input_ids,
encoder_hidden_states=None,
state=None,
attention_mask=None,
memory_lengths=None,
step=None,
cache=None,
encoder_attention_mask=None,
):
"""
See :obj:`onmt.modules.RNNDecoderBase.forward()`
memory_bank = encoder_hidden_states
"""
# Name conversion
tgt = input_ids
memory_bank = encoder_hidden_states
memory_mask = encoder_attention_mask
# src_words = state.src
src_words = state.src
src_batch, src_len = src_words.size()
padding_idx = self.embeddings.padding_idx
# Decoder padding mask
tgt_words = tgt
tgt_batch, tgt_len = tgt_words.size()
tgt_pad_mask = tgt_words.data.eq(padding_idx).unsqueeze(1).expand(tgt_batch, tgt_len, tgt_len)
# Encoder padding mask
if memory_mask is not None:
src_len = memory_mask.size(-1)
src_pad_mask = memory_mask.expand(src_batch, tgt_len, src_len)
else:
src_pad_mask = src_words.data.eq(padding_idx).unsqueeze(1).expand(src_batch, tgt_len, src_len)
# Pass through the embeddings
emb = self.embeddings(input_ids)
output = self.pos_emb(emb, step)
assert emb.dim() == 3 # len x batch x embedding_dim
if state.cache is None:
saved_inputs = []
for i in range(self.num_layers):
prev_layer_input = None
if state.cache is None:
if state.previous_input is not None:
prev_layer_input = state.previous_layer_inputs[i]
output, all_input = self.transformer_layers[i](
output,
memory_bank,
src_pad_mask,
tgt_pad_mask,
previous_input=prev_layer_input,
layer_cache=state.cache["layer_{}".format(i)] if state.cache is not None else None,
step=step,
)
if state.cache is None:
saved_inputs.append(all_input)
if state.cache is None:
saved_inputs = torch.stack(saved_inputs)
output = self.layer_norm(output)
if state.cache is None:
state = state.update_state(tgt, saved_inputs)
# Decoders in transformers return a tuple. Beam search will fail
# if we don't follow this convention.
return output, state # , state
def init_decoder_state(self, src, memory_bank, with_cache=False):
"""Init decoder state"""
state = TransformerDecoderState(src)
if with_cache:
state._init_cache(memory_bank, self.num_layers)
return state
class PositionalEncoding(nn.Module):
def __init__(self, dropout, dim, max_len=5000):
pe = torch.zeros(max_len, dim)
position = torch.arange(0, max_len).unsqueeze(1)
div_term = torch.exp((torch.arange(0, dim, 2, dtype=torch.float) * -(math.log(10000.0) / dim)))
pe[:, 0::2] = torch.sin(position.float() * div_term)
pe[:, 1::2] = torch.cos(position.float() * div_term)
pe = pe.unsqueeze(0)
super().__init__()
self.register_buffer("pe", pe)
self.dropout = nn.Dropout(p=dropout)
self.dim = dim
def forward(self, emb, step=None):
emb = emb * math.sqrt(self.dim)
if step:
emb = emb + self.pe[:, step][:, None, :]
else:
emb = emb + self.pe[:, : emb.size(1)]
emb = self.dropout(emb)
return emb
def get_emb(self, emb):
return self.pe[:, : emb.size(1)]
class TransformerDecoderLayer(nn.Module):
"""
Args:
d_model (int): the dimension of keys/values/queries in
MultiHeadedAttention, also the input size of
the first-layer of the PositionwiseFeedForward.
heads (int): the number of heads for MultiHeadedAttention.
d_ff (int): the second-layer of the PositionwiseFeedForward.
dropout (float): dropout probability(0-1.0).
self_attn_type (string): type of self-attention scaled-dot, average
"""
def __init__(self, d_model, heads, d_ff, dropout):
super().__init__()
self.self_attn = MultiHeadedAttention(heads, d_model, dropout=dropout)
self.context_attn = MultiHeadedAttention(heads, d_model, dropout=dropout)
self.feed_forward = PositionwiseFeedForward(d_model, d_ff, dropout)
self.layer_norm_1 = nn.LayerNorm(d_model, eps=1e-6)
self.layer_norm_2 = nn.LayerNorm(d_model, eps=1e-6)
self.drop = nn.Dropout(dropout)
mask = self._get_attn_subsequent_mask(MAX_SIZE)
# Register self.mask as a saved_state in TransformerDecoderLayer, so
# it gets TransformerDecoderLayer's cuda behavior automatically.
self.register_buffer("mask", mask)
def forward(
self,
inputs,
memory_bank,
src_pad_mask,
tgt_pad_mask,
previous_input=None,
layer_cache=None,
step=None,
):
"""
Args:
inputs (`FloatTensor`): `[batch_size x 1 x model_dim]`
memory_bank (`FloatTensor`): `[batch_size x src_len x model_dim]`
src_pad_mask (`LongTensor`): `[batch_size x 1 x src_len]`
tgt_pad_mask (`LongTensor`): `[batch_size x 1 x 1]`
Returns:
(`FloatTensor`, `FloatTensor`, `FloatTensor`):
* output `[batch_size x 1 x model_dim]`
* attn `[batch_size x 1 x src_len]`
* all_input `[batch_size x current_step x model_dim]`
"""
dec_mask = torch.gt(tgt_pad_mask + self.mask[:, : tgt_pad_mask.size(1), : tgt_pad_mask.size(1)], 0)
input_norm = self.layer_norm_1(inputs)
all_input = input_norm
if previous_input is not None:
all_input = torch.cat((previous_input, input_norm), dim=1)
dec_mask = None
query = self.self_attn(
all_input,
all_input,
input_norm,
mask=dec_mask,
layer_cache=layer_cache,
type="self",
)
query = self.drop(query) + inputs
query_norm = self.layer_norm_2(query)
mid = self.context_attn(
memory_bank,
memory_bank,
query_norm,
mask=src_pad_mask,
layer_cache=layer_cache,
type="context",
)
output = self.feed_forward(self.drop(mid) + query)
return output, all_input
# return output
def _get_attn_subsequent_mask(self, size):
"""
Get an attention mask to avoid using the subsequent info.
Args:
size: int
Returns:
(`LongTensor`):
* subsequent_mask `[1 x size x size]`
"""
attn_shape = (1, size, size)
subsequent_mask = np.triu(np.ones(attn_shape), k=1).astype("uint8")
subsequent_mask = torch.from_numpy(subsequent_mask)
return subsequent_mask
class MultiHeadedAttention(nn.Module):
"""
Multi-Head Attention module from
"Attention is All You Need"
:cite:`DBLP:journals/corr/VaswaniSPUJGKP17`.
Similar to standard `dot` attention but uses
multiple attention distributions simulataneously
to select relevant items.
.. mermaid::
graph BT
A[key]
B[value]
C[query]
O[output]
subgraph Attn
D[Attn 1]
E[Attn 2]
F[Attn N]
end
A --> D
C --> D
A --> E
C --> E
A --> F
C --> F
D --> O
E --> O
F --> O
B --> O
Also includes several additional tricks.
Args:
head_count (int): number of parallel heads
model_dim (int): the dimension of keys/values/queries,
must be divisible by head_count
dropout (float): dropout parameter
"""
def __init__(self, head_count, model_dim, dropout=0.1, use_final_linear=True):
assert model_dim % head_count == 0
self.dim_per_head = model_dim // head_count
self.model_dim = model_dim
super().__init__()
self.head_count = head_count
self.linear_keys = nn.Linear(model_dim, head_count * self.dim_per_head)
self.linear_values = nn.Linear(model_dim, head_count * self.dim_per_head)
self.linear_query = nn.Linear(model_dim, head_count * self.dim_per_head)
self.softmax = nn.Softmax(dim=-1)
self.dropout = nn.Dropout(dropout)
self.use_final_linear = use_final_linear
if self.use_final_linear:
self.final_linear = nn.Linear(model_dim, model_dim)
def forward(
self,
key,
value,
query,
mask=None,
layer_cache=None,
type=None,
predefined_graph_1=None,
):
"""
Compute the context vector and the attention vectors.
Args:
key (`FloatTensor`): set of `key_len`
key vectors `[batch, key_len, dim]`
value (`FloatTensor`): set of `key_len`
value vectors `[batch, key_len, dim]`
query (`FloatTensor`): set of `query_len`
query vectors `[batch, query_len, dim]`
mask: binary mask indicating which keys have
non-zero attention `[batch, query_len, key_len]`
Returns:
(`FloatTensor`, `FloatTensor`) :
* output context vectors `[batch, query_len, dim]`
* one of the attention vectors `[batch, query_len, key_len]`
"""
batch_size = key.size(0)
dim_per_head = self.dim_per_head
head_count = self.head_count
def shape(x):
"""projection"""
return x.view(batch_size, -1, head_count, dim_per_head).transpose(1, 2)
def unshape(x):
"""compute context"""
return x.transpose(1, 2).contiguous().view(batch_size, -1, head_count * dim_per_head)
# 1) Project key, value, and query.
if layer_cache is not None:
if type == "self":
query, key, value = (
self.linear_query(query),
self.linear_keys(query),
self.linear_values(query),
)
key = shape(key)
value = shape(value)
if layer_cache is not None:
device = key.device
if layer_cache["self_keys"] is not None:
key = torch.cat((layer_cache["self_keys"].to(device), key), dim=2)
if layer_cache["self_values"] is not None:
value = torch.cat((layer_cache["self_values"].to(device), value), dim=2)
layer_cache["self_keys"] = key
layer_cache["self_values"] = value
elif type == "context":
query = self.linear_query(query)
if layer_cache is not None:
if layer_cache["memory_keys"] is None:
key, value = self.linear_keys(key), self.linear_values(value)
key = shape(key)
value = shape(value)
else:
key, value = (
layer_cache["memory_keys"],
layer_cache["memory_values"],
)
layer_cache["memory_keys"] = key
layer_cache["memory_values"] = value
else:
key, value = self.linear_keys(key), self.linear_values(value)
key = shape(key)
value = shape(value)
else:
key = self.linear_keys(key)
value = self.linear_values(value)
query = self.linear_query(query)
key = shape(key)
value = shape(value)
query = shape(query)
# 2) Calculate and scale scores.
query = query / math.sqrt(dim_per_head)
scores = torch.matmul(query, key.transpose(2, 3))
if mask is not None:
mask = mask.unsqueeze(1).expand_as(scores)
scores = scores.masked_fill(mask, -1e18)
# 3) Apply attention dropout and compute context vectors.
attn = self.softmax(scores)
if predefined_graph_1 is not None:
attn_masked = attn[:, -1] * predefined_graph_1
attn_masked = attn_masked / (torch.sum(attn_masked, 2).unsqueeze(2) + 1e-9)
attn = torch.cat([attn[:, :-1], attn_masked.unsqueeze(1)], 1)
drop_attn = self.dropout(attn)
if self.use_final_linear:
context = unshape(torch.matmul(drop_attn, value))
output = self.final_linear(context)
return output
else:
context = torch.matmul(drop_attn, value)
return context
class DecoderState(object):
"""Interface for grouping together the current state of a recurrent
decoder. In the simplest case just represents the hidden state of
the model. But can also be used for implementing various forms of
input_feeding and non-recurrent models.
Modules need to implement this to utilize beam search decoding.
"""
def detach(self):
"""Need to document this"""
self.hidden = tuple([_.detach() for _ in self.hidden])
self.input_feed = self.input_feed.detach()
def beam_update(self, idx, positions, beam_size):
"""Need to document this"""
for e in self._all:
sizes = e.size()
br = sizes[1]
if len(sizes) == 3:
sent_states = e.view(sizes[0], beam_size, br // beam_size, sizes[2])[:, :, idx]
else:
sent_states = e.view(sizes[0], beam_size, br // beam_size, sizes[2], sizes[3])[:, :, idx]
sent_states.data.copy_(sent_states.data.index_select(1, positions))
def map_batch_fn(self, fn):
raise NotImplementedError()
class TransformerDecoderState(DecoderState):
"""Transformer Decoder state base class"""
def __init__(self, src):
"""
Args:
src (FloatTensor): a sequence of source words tensors
with optional feature tensors, of size (len x batch).
"""
self.src = src
self.previous_input = None
self.previous_layer_inputs = None
self.cache = None
@property
def _all(self):
"""
Contains attributes that need to be updated in self.beam_update().
"""
if self.previous_input is not None and self.previous_layer_inputs is not None:
return (self.previous_input, self.previous_layer_inputs, self.src)
else:
return (self.src,)
def detach(self):
if self.previous_input is not None:
self.previous_input = self.previous_input.detach()
if self.previous_layer_inputs is not None:
self.previous_layer_inputs = self.previous_layer_inputs.detach()
self.src = self.src.detach()
def update_state(self, new_input, previous_layer_inputs):
state = TransformerDecoderState(self.src)
state.previous_input = new_input
state.previous_layer_inputs = previous_layer_inputs
return state
def _init_cache(self, memory_bank, num_layers):
self.cache = {}
for l in range(num_layers):
layer_cache = {"memory_keys": None, "memory_values": None}
layer_cache["self_keys"] = None
layer_cache["self_values"] = None
self.cache["layer_{}".format(l)] = layer_cache
def repeat_beam_size_times(self, beam_size):
"""Repeat beam_size times along batch dimension."""
self.src = self.src.data.repeat(1, beam_size, 1)
def map_batch_fn(self, fn):
def _recursive_map(struct, batch_dim=0):
for k, v in struct.items():
if v is not None:
if isinstance(v, dict):
_recursive_map(v)
else:
struct[k] = fn(v, batch_dim)
self.src = fn(self.src, 0)
if self.cache is not None:
_recursive_map(self.cache)
def gelu(x):
return 0.5 * x * (1 + torch.tanh(math.sqrt(2 / math.pi) * (x + 0.044715 * torch.pow(x, 3))))
class PositionwiseFeedForward(nn.Module):
"""A two-layer Feed-Forward-Network with residual layer norm.
Args:
d_model (int): the size of input for the first-layer of the FFN.
d_ff (int): the hidden layer size of the second-layer
of the FNN.
dropout (float): dropout probability in :math:`[0, 1)`.
"""
def __init__(self, d_model, d_ff, dropout=0.1):
super().__init__()
self.w_1 = nn.Linear(d_model, d_ff)
self.w_2 = nn.Linear(d_ff, d_model)
self.layer_norm = nn.LayerNorm(d_model, eps=1e-6)
self.actv = gelu
self.dropout_1 = nn.Dropout(dropout)
self.dropout_2 = nn.Dropout(dropout)
def forward(self, x):
inter = self.dropout_1(self.actv(self.w_1(self.layer_norm(x))))
output = self.dropout_2(self.w_2(inter))
return output + x
#
# TRANSLATOR
# The following code is used to generate summaries using the
# pre-trained weights and beam search.
#
def build_predictor(args, tokenizer, symbols, model, logger=None):
# we should be able to refactor the global scorer a lot
scorer = GNMTGlobalScorer(args.alpha, length_penalty="wu")
translator = Translator(args, model, tokenizer, symbols, global_scorer=scorer, logger=logger)
return translator
class GNMTGlobalScorer(object):
"""
NMT re-ranking score from
"Google's Neural Machine Translation System" :cite:`wu2016google`
Args:
alpha (float): length parameter
beta (float): coverage parameter
"""
def __init__(self, alpha, length_penalty):
self.alpha = alpha
penalty_builder = PenaltyBuilder(length_penalty)
self.length_penalty = penalty_builder.length_penalty()
def score(self, beam, logprobs):
"""
Rescores a prediction based on penalty functions
"""
normalized_probs = self.length_penalty(beam, logprobs, self.alpha)
return normalized_probs
class PenaltyBuilder(object):
"""
Returns the Length and Coverage Penalty function for Beam Search.
Args:
length_pen (str): option name of length pen
cov_pen (str): option name of cov pen
"""
def __init__(self, length_pen):
self.length_pen = length_pen
def length_penalty(self):
if self.length_pen == "wu":
return self.length_wu
elif self.length_pen == "avg":
return self.length_average
else:
return self.length_none
"""
Below are all the different penalty terms implemented so far
"""
def length_wu(self, beam, logprobs, alpha=0.0):
"""
NMT length re-ranking score from
"Google's Neural Machine Translation System" :cite:`wu2016google`.
"""
modifier = ((5 + len(beam.next_ys)) ** alpha) / ((5 + 1) ** alpha)
return logprobs / modifier
def length_average(self, beam, logprobs, alpha=0.0):
"""
Returns the average probability of tokens in a sequence.
"""
return logprobs / len(beam.next_ys)
def length_none(self, beam, logprobs, alpha=0.0, beta=0.0):
"""
Returns unmodified scores.
"""
return logprobs
class Translator(object):
"""
Uses a model to translate a batch of sentences.
Args:
model (:obj:`onmt.modules.NMTModel`):
NMT model to use for translation
fields (dict of Fields): data fields
beam_size (int): size of beam to use
n_best (int): number of translations produced
max_length (int): maximum length output to produce
global_scores (:obj:`GlobalScorer`):
object to rescore final translations
copy_attn (bool): use copy attention during translation
beam_trace (bool): trace beam search for debugging
logger(logging.Logger): logger.
"""
def __init__(self, args, model, vocab, symbols, global_scorer=None, logger=None):
self.logger = logger
self.args = args
self.model = model
self.generator = self.model.generator
self.vocab = vocab
self.symbols = symbols
self.start_token = symbols["BOS"]
self.end_token = symbols["EOS"]
self.global_scorer = global_scorer
self.beam_size = args.beam_size
self.min_length = args.min_length
self.max_length = args.max_length
def translate(self, batch, step, attn_debug=False):
"""Generates summaries from one batch of data."""
self.model.eval()
with torch.no_grad():
batch_data = self.translate_batch(batch)
translations = self.from_batch(batch_data)
return translations
def translate_batch(self, batch, fast=False):
"""
Translate a batch of sentences.
Mostly a wrapper around :obj:`Beam`.
Args:
batch (:obj:`Batch`): a batch from a dataset object
fast (bool): enables fast beam search (may not support all features)
"""
with torch.no_grad():
return self._fast_translate_batch(batch, self.max_length, min_length=self.min_length)
# Where the beam search lives
# I have no idea why it is being called from the method above
def _fast_translate_batch(self, batch, max_length, min_length=0):
"""Beam Search using the encoder inputs contained in `batch`."""
# The batch object is funny
# Instead of just looking at the size of the arguments we encapsulate
# a size argument.
# Where is it defined?
beam_size = self.beam_size
batch_size = batch.batch_size
src = batch.src
segs = batch.segs
mask_src = batch.mask_src
src_features = self.model.bert(src, segs, mask_src)
dec_states = self.model.decoder.init_decoder_state(src, src_features, with_cache=True)
device = src_features.device
# Tile states and memory beam_size times.
dec_states.map_batch_fn(lambda state, dim: tile(state, beam_size, dim=dim))
src_features = tile(src_features, beam_size, dim=0)
batch_offset = torch.arange(batch_size, dtype=torch.long, device=device)
beam_offset = torch.arange(0, batch_size * beam_size, step=beam_size, dtype=torch.long, device=device)
alive_seq = torch.full([batch_size * beam_size, 1], self.start_token, dtype=torch.long, device=device)
# Give full probability to the first beam on the first step.
topk_log_probs = torch.tensor([0.0] + [float("-inf")] * (beam_size - 1), device=device).repeat(batch_size)
# Structure that holds finished hypotheses.
hypotheses = [[] for _ in range(batch_size)] # noqa: F812
results = {}
results["predictions"] = [[] for _ in range(batch_size)] # noqa: F812
results["scores"] = [[] for _ in range(batch_size)] # noqa: F812
results["gold_score"] = [0] * batch_size
results["batch"] = batch
for step in range(max_length):
decoder_input = alive_seq[:, -1].view(1, -1)
# Decoder forward.
decoder_input = decoder_input.transpose(0, 1)
dec_out, dec_states = self.model.decoder(decoder_input, src_features, dec_states, step=step)
# Generator forward.
log_probs = self.generator(dec_out.transpose(0, 1).squeeze(0))
vocab_size = log_probs.size(-1)
if step < min_length:
log_probs[:, self.end_token] = -1e20
# Multiply probs by the beam probability.
log_probs += topk_log_probs.view(-1).unsqueeze(1)
alpha = self.global_scorer.alpha
length_penalty = ((5.0 + (step + 1)) / 6.0) ** alpha
# Flatten probs into a list of possibilities.
curr_scores = log_probs / length_penalty
if self.args.block_trigram:
cur_len = alive_seq.size(1)
if cur_len > 3:
for i in range(alive_seq.size(0)):
fail = False
words = [int(w) for w in alive_seq[i]]
words = [self.vocab.ids_to_tokens[w] for w in words]
words = " ".join(words).replace(" ##", "").split()
if len(words) <= 3:
continue
trigrams = [(words[i - 1], words[i], words[i + 1]) for i in range(1, len(words) - 1)]
trigram = tuple(trigrams[-1])
if trigram in trigrams[:-1]:
fail = True
if fail:
curr_scores[i] = -10e20
curr_scores = curr_scores.reshape(-1, beam_size * vocab_size)
topk_scores, topk_ids = curr_scores.topk(beam_size, dim=-1)
# Recover log probs.
topk_log_probs = topk_scores * length_penalty
# Resolve beam origin and true word ids.
topk_beam_index = topk_ids.div(vocab_size)
topk_ids = topk_ids.fmod(vocab_size)
# Map beam_index to batch_index in the flat representation.
batch_index = topk_beam_index + beam_offset[: topk_beam_index.size(0)].unsqueeze(1)
select_indices = batch_index.view(-1)
# Append last prediction.
alive_seq = torch.cat([alive_seq.index_select(0, select_indices), topk_ids.view(-1, 1)], -1)
is_finished = topk_ids.eq(self.end_token)
if step + 1 == max_length:
is_finished.fill_(1)
# End condition is top beam is finished.
end_condition = is_finished[:, 0].eq(1)
# Save finished hypotheses.
if is_finished.any():
predictions = alive_seq.view(-1, beam_size, alive_seq.size(-1))
for i in range(is_finished.size(0)):
b = batch_offset[i]
if end_condition[i]:
is_finished[i].fill_(1)
finished_hyp = is_finished[i].nonzero().view(-1)
# Store finished hypotheses for this batch.
for j in finished_hyp:
hypotheses[b].append((topk_scores[i, j], predictions[i, j, 1:]))
# If the batch reached the end, save the n_best hypotheses.
if end_condition[i]:
best_hyp = sorted(hypotheses[b], key=lambda x: x[0], reverse=True)
score, pred = best_hyp[0]
results["scores"][b].append(score)
results["predictions"][b].append(pred)
non_finished = end_condition.eq(0).nonzero().view(-1)
# If all sentences are translated, no need to go further.
if len(non_finished) == 0:
break
# Remove finished batches for the next step.
topk_log_probs = topk_log_probs.index_select(0, non_finished)
batch_index = batch_index.index_select(0, non_finished)
batch_offset = batch_offset.index_select(0, non_finished)
alive_seq = predictions.index_select(0, non_finished).view(-1, alive_seq.size(-1))
# Reorder states.
select_indices = batch_index.view(-1)
src_features = src_features.index_select(0, select_indices)
dec_states.map_batch_fn(lambda state, dim: state.index_select(dim, select_indices))
return results
def from_batch(self, translation_batch):
batch = translation_batch["batch"]
assert len(translation_batch["gold_score"]) == len(translation_batch["predictions"])
batch_size = batch.batch_size
preds, _, _, tgt_str, src = (
translation_batch["predictions"],
translation_batch["scores"],
translation_batch["gold_score"],
batch.tgt_str,
batch.src,
)
translations = []
for b in range(batch_size):
pred_sents = self.vocab.convert_ids_to_tokens([int(n) for n in preds[b][0]])
pred_sents = " ".join(pred_sents).replace(" ##", "")
gold_sent = " ".join(tgt_str[b].split())
raw_src = [self.vocab.ids_to_tokens[int(t)] for t in src[b]][:500]
raw_src = " ".join(raw_src)
translation = (pred_sents, gold_sent, raw_src)
translations.append(translation)
return translations
def tile(x, count, dim=0):
"""
Tiles x on dimension dim count times.
"""
perm = list(range(len(x.size())))
if dim != 0:
perm[0], perm[dim] = perm[dim], perm[0]
x = x.permute(perm).contiguous()
out_size = list(x.size())
out_size[0] *= count
batch = x.size(0)
x = x.view(batch, -1).transpose(0, 1).repeat(count, 1).transpose(0, 1).contiguous().view(*out_size)
if dim != 0:
x = x.permute(perm).contiguous()
return x
#
# Optimizer for training. We keep this here in case we want to add
# a finetuning script.
#
class BertSumOptimizer(object):
"""Specific optimizer for BertSum.
As described in [1], the authors fine-tune BertSum for abstractive
summarization using two Adam Optimizers with different warm-up steps and
learning rate. They also use a custom learning rate scheduler.
[1] Liu, Yang, and Mirella Lapata. "Text summarization with pretrained encoders."
arXiv preprint arXiv:1908.08345 (2019).
"""
def __init__(self, model, lr, warmup_steps, beta_1=0.99, beta_2=0.999, eps=1e-8):
self.encoder = model.encoder
self.decoder = model.decoder
self.lr = lr
self.warmup_steps = warmup_steps
self.optimizers = {
"encoder": torch.optim.Adam(
model.encoder.parameters(),
lr=lr["encoder"],
betas=(beta_1, beta_2),
eps=eps,
),
"decoder": torch.optim.Adam(
model.decoder.parameters(),
lr=lr["decoder"],
betas=(beta_1, beta_2),
eps=eps,
),
}
self._step = 0
self.current_learning_rates = {}
def _update_rate(self, stack):
return self.lr[stack] * min(self._step ** (-0.5), self._step * self.warmup_steps[stack] ** (-1.5))
def zero_grad(self):
self.optimizer_decoder.zero_grad()
self.optimizer_encoder.zero_grad()
def step(self):
self._step += 1
for stack, optimizer in self.optimizers.items():
new_rate = self._update_rate(stack)
for param_group in optimizer.param_groups:
param_group["lr"] = new_rate
optimizer.step()
self.current_learning_rates[stack] = new_rate
| 38,263 | 35.1322 | 114 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/configuration_bertabs.py | # coding=utf-8
# Copyright 2019 The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" BertAbs configuration """
import logging
from transformers import PretrainedConfig
logger = logging.getLogger(__name__)
BERTABS_FINETUNED_CONFIG_MAP = {
"bertabs-finetuned-cnndm": "https://huggingface.co/remi/bertabs-finetuned-cnndm-extractive-abstractive-summarization/resolve/main/config.json",
}
class BertAbsConfig(PretrainedConfig):
r"""Class to store the configuration of the BertAbs model.
Arguments:
vocab_size: int
Number of tokens in the vocabulary.
max_pos: int
The maximum sequence length that this model will be used with.
enc_layer: int
The numner of hidden layers in the Transformer encoder.
enc_hidden_size: int
The size of the encoder's layers.
enc_heads: int
The number of attention heads for each attention layer in the encoder.
enc_ff_size: int
The size of the encoder's feed-forward layers.
enc_dropout: int
The dropout probability for all fully connected layers in the
embeddings, layers, pooler and also the attention probabilities in
the encoder.
dec_layer: int
The numner of hidden layers in the decoder.
dec_hidden_size: int
The size of the decoder's layers.
dec_heads: int
The number of attention heads for each attention layer in the decoder.
dec_ff_size: int
The size of the decoder's feed-forward layers.
dec_dropout: int
The dropout probability for all fully connected layers in the
embeddings, layers, pooler and also the attention probabilities in
the decoder.
"""
model_type = "bertabs"
def __init__(
self,
vocab_size=30522,
max_pos=512,
enc_layers=6,
enc_hidden_size=512,
enc_heads=8,
enc_ff_size=512,
enc_dropout=0.2,
dec_layers=6,
dec_hidden_size=768,
dec_heads=8,
dec_ff_size=2048,
dec_dropout=0.2,
**kwargs,
):
super().__init__(**kwargs)
self.vocab_size = vocab_size
self.max_pos = max_pos
self.enc_layers = enc_layers
self.enc_hidden_size = enc_hidden_size
self.enc_heads = enc_heads
self.enc_ff_size = enc_ff_size
self.enc_dropout = enc_dropout
self.dec_layers = dec_layers
self.dec_hidden_size = dec_hidden_size
self.dec_heads = dec_heads
self.dec_ff_size = dec_ff_size
self.dec_dropout = dec_dropout
| 3,261 | 32.285714 | 147 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/convert_bertabs_original_pytorch_checkpoint.py | # coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Convert BertExtAbs's checkpoints.
The script looks like it is doing something trivial but it is not. The "weights"
proposed by the authors are actually the entire model pickled. We need to load
the model within the original codebase to be able to only save its `state_dict`.
"""
import argparse
import logging
from collections import namedtuple
import torch
from model_bertabs import BertAbsSummarizer
from models.model_builder import AbsSummarizer # The authors' implementation
from transformers import BertTokenizer
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
SAMPLE_TEXT = "Hello world! cécé herlolip"
BertAbsConfig = namedtuple(
"BertAbsConfig",
[
"temp_dir",
"large",
"use_bert_emb",
"finetune_bert",
"encoder",
"share_emb",
"max_pos",
"enc_layers",
"enc_hidden_size",
"enc_heads",
"enc_ff_size",
"enc_dropout",
"dec_layers",
"dec_hidden_size",
"dec_heads",
"dec_ff_size",
"dec_dropout",
],
)
def convert_bertabs_checkpoints(path_to_checkpoints, dump_path):
"""Copy/paste and tweak the pre-trained weights provided by the creators
of BertAbs for the internal architecture.
"""
# Instantiate the authors' model with the pre-trained weights
config = BertAbsConfig(
temp_dir=".",
finetune_bert=False,
large=False,
share_emb=True,
use_bert_emb=False,
encoder="bert",
max_pos=512,
enc_layers=6,
enc_hidden_size=512,
enc_heads=8,
enc_ff_size=512,
enc_dropout=0.2,
dec_layers=6,
dec_hidden_size=768,
dec_heads=8,
dec_ff_size=2048,
dec_dropout=0.2,
)
checkpoints = torch.load(path_to_checkpoints, lambda storage, loc: storage)
original = AbsSummarizer(config, torch.device("cpu"), checkpoints)
original.eval()
new_model = BertAbsSummarizer(config, torch.device("cpu"))
new_model.eval()
# -------------------
# Convert the weights
# -------------------
logging.info("convert the model")
new_model.bert.load_state_dict(original.bert.state_dict())
new_model.decoder.load_state_dict(original.decoder.state_dict())
new_model.generator.load_state_dict(original.generator.state_dict())
# ----------------------------------
# Make sure the outpus are identical
# ----------------------------------
logging.info("Make sure that the models' outputs are identical")
tokenizer = BertTokenizer.from_pretrained("bert-base-uncased")
# prepare the model inputs
encoder_input_ids = tokenizer.encode("This is sample éàalj'-.")
encoder_input_ids.extend([tokenizer.pad_token_id] * (512 - len(encoder_input_ids)))
encoder_input_ids = torch.tensor(encoder_input_ids).unsqueeze(0)
decoder_input_ids = tokenizer.encode("This is sample 3 éàalj'-.")
decoder_input_ids.extend([tokenizer.pad_token_id] * (512 - len(decoder_input_ids)))
decoder_input_ids = torch.tensor(decoder_input_ids).unsqueeze(0)
# failsafe to make sure the weights reset does not affect the
# loaded weights.
assert torch.max(torch.abs(original.generator[0].weight - new_model.generator[0].weight)) == 0
# forward pass
src = encoder_input_ids
tgt = decoder_input_ids
segs = token_type_ids = None
clss = None
mask_src = encoder_attention_mask = None
mask_tgt = decoder_attention_mask = None
mask_cls = None
# The original model does not apply the geneator layer immediatly but rather in
# the beam search (where it combines softmax + linear layer). Since we already
# apply the softmax in our generation process we only apply the linear layer here.
# We make sure that the outputs of the full stack are identical
output_original_model = original(src, tgt, segs, clss, mask_src, mask_tgt, mask_cls)[0]
output_original_generator = original.generator(output_original_model)
output_converted_model = new_model(
encoder_input_ids, decoder_input_ids, token_type_ids, encoder_attention_mask, decoder_attention_mask
)[0]
output_converted_generator = new_model.generator(output_converted_model)
maximum_absolute_difference = torch.max(torch.abs(output_converted_model - output_original_model)).item()
print("Maximum absolute difference beween weights: {:.2f}".format(maximum_absolute_difference))
maximum_absolute_difference = torch.max(torch.abs(output_converted_generator - output_original_generator)).item()
print("Maximum absolute difference beween weights: {:.2f}".format(maximum_absolute_difference))
are_identical = torch.allclose(output_converted_model, output_original_model, atol=1e-3)
if are_identical:
logging.info("all weights are equal up to 1e-3")
else:
raise ValueError("the weights are different. The new model is likely different from the original one.")
# The model has been saved with torch.save(model) and this is bound to the exact
# directory structure. We save the state_dict instead.
logging.info("saving the model's state dictionary")
torch.save(
new_model.state_dict(), "./bertabs-finetuned-cnndm-extractive-abstractive-summarization/pytorch_model.bin"
)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--bertabs_checkpoint_path",
default=None,
type=str,
required=True,
help="Path the official PyTorch dump.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
required=True,
help="Path to the output PyTorch model.",
)
args = parser.parse_args()
convert_bertabs_checkpoints(
args.bertabs_checkpoint_path,
args.pytorch_dump_folder_path,
)
| 6,523 | 34.075269 | 117 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/utils_summarization.py | import os
from collections import deque
import torch
from torch.utils.data import Dataset
# ------------
# Data loading
# ------------
class CNNDMDataset(Dataset):
"""Abstracts the dataset used to train seq2seq models.
The class will process the documents that are located in the specified
folder. The preprocessing will work on any document that is reasonably
formatted. On the CNN/DailyMail dataset it will extract both the story
and the summary.
CNN/Daily News:
The CNN/Daily News raw datasets are downloaded from [1]. The stories are
stored in different files; the summary appears at the end of the story as
sentences that are prefixed by the special `@highlight` line. To process
the data, untar both datasets in the same folder, and pass the path to this
folder as the "data_dir argument. The formatting code was inspired by [2].
[1] https://cs.nyu.edu/~kcho/
[2] https://github.com/abisee/cnn-dailymail/
"""
def __init__(self, path="", prefix="train"):
"""We initialize the class by listing all the documents to summarize.
Files are not read in memory due to the size of some datasets (like CNN/DailyMail).
"""
assert os.path.isdir(path)
self.documents = []
story_filenames_list = os.listdir(path)
for story_filename in story_filenames_list:
if "summary" in story_filename:
continue
path_to_story = os.path.join(path, story_filename)
if not os.path.isfile(path_to_story):
continue
self.documents.append(path_to_story)
def __len__(self):
"""Returns the number of documents."""
return len(self.documents)
def __getitem__(self, idx):
document_path = self.documents[idx]
document_name = document_path.split("/")[-1]
with open(document_path, encoding="utf-8") as source:
raw_story = source.read()
story_lines, summary_lines = process_story(raw_story)
return document_name, story_lines, summary_lines
def process_story(raw_story):
"""Extract the story and summary from a story file.
Arguments:
raw_story (str): content of the story file as an utf-8 encoded string.
Raises:
IndexError: If the story is empty or contains no highlights.
"""
nonempty_lines = list(filter(lambda x: len(x) != 0, [line.strip() for line in raw_story.split("\n")]))
# for some unknown reason some lines miss a period, add it
nonempty_lines = [_add_missing_period(line) for line in nonempty_lines]
# gather article lines
story_lines = []
lines = deque(nonempty_lines)
while True:
try:
element = lines.popleft()
if element.startswith("@highlight"):
break
story_lines.append(element)
except IndexError:
# if "@highlight" is absent from the file we pop
# all elements until there is None, raising an exception.
return story_lines, []
# gather summary lines
summary_lines = list(filter(lambda t: not t.startswith("@highlight"), lines))
return story_lines, summary_lines
def _add_missing_period(line):
END_TOKENS = [".", "!", "?", "...", "'", "`", '"', "\u2019", "\u2019", ")"]
if line.startswith("@highlight"):
return line
if line[-1] in END_TOKENS:
return line
return line + "."
# --------------------------
# Encoding and preprocessing
# --------------------------
def truncate_or_pad(sequence, block_size, pad_token_id):
"""Adapt the source and target sequences' lengths to the block size.
If the sequence is shorter we append padding token to the right of the sequence.
"""
if len(sequence) > block_size:
return sequence[:block_size]
else:
sequence.extend([pad_token_id] * (block_size - len(sequence)))
return sequence
def build_mask(sequence, pad_token_id):
"""Builds the mask. The attention mechanism will only attend to positions
with value 1."""
mask = torch.ones_like(sequence)
idx_pad_tokens = sequence == pad_token_id
mask[idx_pad_tokens] = 0
return mask
def encode_for_summarization(story_lines, summary_lines, tokenizer):
"""Encode the story and summary lines, and join them
as specified in [1] by using `[SEP] [CLS]` tokens to separate
sentences.
"""
story_lines_token_ids = [tokenizer.encode(line) for line in story_lines]
story_token_ids = [token for sentence in story_lines_token_ids for token in sentence]
summary_lines_token_ids = [tokenizer.encode(line) for line in summary_lines]
summary_token_ids = [token for sentence in summary_lines_token_ids for token in sentence]
return story_token_ids, summary_token_ids
def compute_token_type_ids(batch, separator_token_id):
"""Segment embeddings as described in [1]
The values {0,1} were found in the repository [2].
Attributes:
batch: torch.Tensor, size [batch_size, block_size]
Batch of input.
separator_token_id: int
The value of the token that separates the segments.
[1] Liu, Yang, and Mirella Lapata. "Text summarization with pretrained encoders."
arXiv preprint arXiv:1908.08345 (2019).
[2] https://github.com/nlpyang/PreSumm (/src/prepro/data_builder.py, commit fac1217)
"""
batch_embeddings = []
for sequence in batch:
sentence_num = -1
embeddings = []
for s in sequence:
if s == separator_token_id:
sentence_num += 1
embeddings.append(sentence_num % 2)
batch_embeddings.append(embeddings)
return torch.tensor(batch_embeddings)
| 5,753 | 33.25 | 106 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/test_utils_summarization.py | # coding=utf-8
# Copyright 2019 HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
import numpy as np
import torch
from .utils_summarization import build_mask, compute_token_type_ids, process_story, truncate_or_pad
class SummarizationDataProcessingTest(unittest.TestCase):
def setUp(self):
self.block_size = 10
def test_fit_to_block_sequence_too_small(self):
"""Pad the sequence with 0 if the sequence is smaller than the block size."""
sequence = [1, 2, 3, 4]
expected_output = [1, 2, 3, 4, 0, 0, 0, 0, 0, 0]
self.assertEqual(truncate_or_pad(sequence, self.block_size, 0), expected_output)
def test_fit_to_block_sequence_fit_exactly(self):
"""Do nothing if the sequence is the right size."""
sequence = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
expected_output = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
self.assertEqual(truncate_or_pad(sequence, self.block_size, 0), expected_output)
def test_fit_to_block_sequence_too_big(self):
"""Truncate the sequence if it is too long."""
sequence = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13]
expected_output = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10]
self.assertEqual(truncate_or_pad(sequence, self.block_size, 0), expected_output)
def test_process_story_no_highlights(self):
"""Processing a story with no highlights returns an empty list for the summary."""
raw_story = """It was the year of Our Lord one thousand seven hundred and
seventy-five.\n\nSpiritual revelations were conceded to England at that
favoured period, as at this."""
_, summary_lines = process_story(raw_story)
self.assertEqual(summary_lines, [])
def test_process_empty_story(self):
"""An empty story returns an empty collection of lines."""
raw_story = ""
story_lines, summary_lines = process_story(raw_story)
self.assertEqual(story_lines, [])
self.assertEqual(summary_lines, [])
def test_process_story_with_missing_period(self):
raw_story = (
"It was the year of Our Lord one thousand seven hundred and "
"seventy-five\n\nSpiritual revelations were conceded to England "
"at that favoured period, as at this.\n@highlight\n\nIt was the best of times"
)
story_lines, summary_lines = process_story(raw_story)
expected_story_lines = [
"It was the year of Our Lord one thousand seven hundred and seventy-five.",
"Spiritual revelations were conceded to England at that favoured period, as at this.",
]
self.assertEqual(expected_story_lines, story_lines)
expected_summary_lines = ["It was the best of times."]
self.assertEqual(expected_summary_lines, summary_lines)
def test_build_mask_no_padding(self):
sequence = torch.tensor([1, 2, 3, 4])
expected = torch.tensor([1, 1, 1, 1])
np.testing.assert_array_equal(build_mask(sequence, 0).numpy(), expected.numpy())
def test_build_mask(self):
sequence = torch.tensor([1, 2, 3, 4, 23, 23, 23])
expected = torch.tensor([1, 1, 1, 1, 0, 0, 0])
np.testing.assert_array_equal(build_mask(sequence, 23).numpy(), expected.numpy())
def test_build_mask_with_padding_equal_to_one(self):
sequence = torch.tensor([8, 2, 3, 4, 1, 1, 1])
expected = torch.tensor([1, 1, 1, 1, 0, 0, 0])
np.testing.assert_array_equal(build_mask(sequence, 1).numpy(), expected.numpy())
def test_compute_token_type_ids(self):
separator = 101
batch = torch.tensor([[1, 2, 3, 4, 5, 6], [1, 2, 3, 101, 5, 6], [1, 101, 3, 4, 101, 6]])
expected = torch.tensor([[1, 1, 1, 1, 1, 1], [1, 1, 1, 0, 0, 0], [1, 0, 0, 0, 1, 1]])
result = compute_token_type_ids(batch, separator)
np.testing.assert_array_equal(result, expected)
| 4,419 | 43.646465 | 99 | py |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/__init__.py | 0 | 0 | 0 | py | |
robust-transformers | robust-transformers-main/examples/research_projects/bertabs/run_summarization.py | #! /usr/bin/python3
import argparse
import logging
import os
import sys
from collections import namedtuple
import torch
from torch.utils.data import DataLoader, SequentialSampler
from tqdm import tqdm
from modeling_bertabs import BertAbs, build_predictor
from transformers import BertTokenizer
from .utils_summarization import (
CNNDMDataset,
build_mask,
compute_token_type_ids,
encode_for_summarization,
truncate_or_pad,
)
logger = logging.getLogger(__name__)
logging.basicConfig(stream=sys.stdout, level=logging.INFO)
Batch = namedtuple("Batch", ["document_names", "batch_size", "src", "segs", "mask_src", "tgt_str"])
def evaluate(args):
tokenizer = BertTokenizer.from_pretrained("bert-base-uncased", do_lower_case=True)
model = BertAbs.from_pretrained("remi/bertabs-finetuned-extractive-abstractive-summarization")
model.to(args.device)
model.eval()
symbols = {
"BOS": tokenizer.vocab["[unused0]"],
"EOS": tokenizer.vocab["[unused1]"],
"PAD": tokenizer.vocab["[PAD]"],
}
if args.compute_rouge:
reference_summaries = []
generated_summaries = []
import nltk
import rouge
nltk.download("punkt")
rouge_evaluator = rouge.Rouge(
metrics=["rouge-n", "rouge-l"],
max_n=2,
limit_length=True,
length_limit=args.beam_size,
length_limit_type="words",
apply_avg=True,
apply_best=False,
alpha=0.5, # Default F1_score
weight_factor=1.2,
stemming=True,
)
# these (unused) arguments are defined to keep the compatibility
# with the legacy code and will be deleted in a next iteration.
args.result_path = ""
args.temp_dir = ""
data_iterator = build_data_iterator(args, tokenizer)
predictor = build_predictor(args, tokenizer, symbols, model)
logger.info("***** Running evaluation *****")
logger.info(" Number examples = %d", len(data_iterator.dataset))
logger.info(" Batch size = %d", args.batch_size)
logger.info("")
logger.info("***** Beam Search parameters *****")
logger.info(" Beam size = %d", args.beam_size)
logger.info(" Minimum length = %d", args.min_length)
logger.info(" Maximum length = %d", args.max_length)
logger.info(" Alpha (length penalty) = %.2f", args.alpha)
logger.info(" Trigrams %s be blocked", ("will" if args.block_trigram else "will NOT"))
for batch in tqdm(data_iterator):
batch_data = predictor.translate_batch(batch)
translations = predictor.from_batch(batch_data)
summaries = [format_summary(t) for t in translations]
save_summaries(summaries, args.summaries_output_dir, batch.document_names)
if args.compute_rouge:
reference_summaries += batch.tgt_str
generated_summaries += summaries
if args.compute_rouge:
scores = rouge_evaluator.get_scores(generated_summaries, reference_summaries)
str_scores = format_rouge_scores(scores)
save_rouge_scores(str_scores)
print(str_scores)
def save_summaries(summaries, path, original_document_name):
"""Write the summaries in fies that are prefixed by the original
files' name with the `_summary` appended.
Attributes:
original_document_names: List[string]
Name of the document that was summarized.
path: string
Path were the summaries will be written
summaries: List[string]
The summaries that we produced.
"""
for summary, document_name in zip(summaries, original_document_name):
# Prepare the summary file's name
if "." in document_name:
bare_document_name = ".".join(document_name.split(".")[:-1])
extension = document_name.split(".")[-1]
name = bare_document_name + "_summary." + extension
else:
name = document_name + "_summary"
file_path = os.path.join(path, name)
with open(file_path, "w") as output:
output.write(summary)
def format_summary(translation):
"""Transforms the output of the `from_batch` function
into nicely formatted summaries.
"""
raw_summary, _, _ = translation
summary = (
raw_summary.replace("[unused0]", "")
.replace("[unused3]", "")
.replace("[PAD]", "")
.replace("[unused1]", "")
.replace(r" +", " ")
.replace(" [unused2] ", ". ")
.replace("[unused2]", "")
.strip()
)
return summary
def format_rouge_scores(scores):
return """\n
****** ROUGE SCORES ******
** ROUGE 1
F1 >> {:.3f}
Precision >> {:.3f}
Recall >> {:.3f}
** ROUGE 2
F1 >> {:.3f}
Precision >> {:.3f}
Recall >> {:.3f}
** ROUGE L
F1 >> {:.3f}
Precision >> {:.3f}
Recall >> {:.3f}""".format(
scores["rouge-1"]["f"],
scores["rouge-1"]["p"],
scores["rouge-1"]["r"],
scores["rouge-2"]["f"],
scores["rouge-2"]["p"],
scores["rouge-2"]["r"],
scores["rouge-l"]["f"],
scores["rouge-l"]["p"],
scores["rouge-l"]["r"],
)
def save_rouge_scores(str_scores):
with open("rouge_scores.txt", "w") as output:
output.write(str_scores)
#
# LOAD the dataset
#
def build_data_iterator(args, tokenizer):
dataset = load_and_cache_examples(args, tokenizer)
sampler = SequentialSampler(dataset)
def collate_fn(data):
return collate(data, tokenizer, block_size=512, device=args.device)
iterator = DataLoader(
dataset,
sampler=sampler,
batch_size=args.batch_size,
collate_fn=collate_fn,
)
return iterator
def load_and_cache_examples(args, tokenizer):
dataset = CNNDMDataset(args.documents_dir)
return dataset
def collate(data, tokenizer, block_size, device):
"""Collate formats the data passed to the data loader.
In particular we tokenize the data batch after batch to avoid keeping them
all in memory. We output the data as a namedtuple to fit the original BertAbs's
API.
"""
data = [x for x in data if not len(x[1]) == 0] # remove empty_files
names = [name for name, _, _ in data]
summaries = [" ".join(summary_list) for _, _, summary_list in data]
encoded_text = [encode_for_summarization(story, summary, tokenizer) for _, story, summary in data]
encoded_stories = torch.tensor(
[truncate_or_pad(story, block_size, tokenizer.pad_token_id) for story, _ in encoded_text]
)
encoder_token_type_ids = compute_token_type_ids(encoded_stories, tokenizer.cls_token_id)
encoder_mask = build_mask(encoded_stories, tokenizer.pad_token_id)
batch = Batch(
document_names=names,
batch_size=len(encoded_stories),
src=encoded_stories.to(device),
segs=encoder_token_type_ids.to(device),
mask_src=encoder_mask.to(device),
tgt_str=summaries,
)
return batch
def decode_summary(summary_tokens, tokenizer):
"""Decode the summary and return it in a format
suitable for evaluation.
"""
summary_tokens = summary_tokens.to("cpu").numpy()
summary = tokenizer.decode(summary_tokens)
sentences = summary.split(".")
sentences = [s + "." for s in sentences]
return sentences
def main():
"""The main function defines the interface with the users."""
parser = argparse.ArgumentParser()
parser.add_argument(
"--documents_dir",
default=None,
type=str,
required=True,
help="The folder where the documents to summarize are located.",
)
parser.add_argument(
"--summaries_output_dir",
default=None,
type=str,
required=False,
help="The folder in wich the summaries should be written. Defaults to the folder where the documents are",
)
parser.add_argument(
"--compute_rouge",
default=False,
type=bool,
required=False,
help="Compute the ROUGE metrics during evaluation. Only available for the CNN/DailyMail dataset.",
)
# EVALUATION options
parser.add_argument(
"--no_cuda",
default=False,
type=bool,
help="Whether to force the execution on CPU.",
)
parser.add_argument(
"--batch_size",
default=4,
type=int,
help="Batch size per GPU/CPU for training.",
)
# BEAM SEARCH arguments
parser.add_argument(
"--min_length",
default=50,
type=int,
help="Minimum number of tokens for the summaries.",
)
parser.add_argument(
"--max_length",
default=200,
type=int,
help="Maixmum number of tokens for the summaries.",
)
parser.add_argument(
"--beam_size",
default=5,
type=int,
help="The number of beams to start with for each example.",
)
parser.add_argument(
"--alpha",
default=0.95,
type=float,
help="The value of alpha for the length penalty in the beam search.",
)
parser.add_argument(
"--block_trigram",
default=True,
type=bool,
help="Whether to block the existence of repeating trigrams in the text generated by beam search.",
)
args = parser.parse_args()
# Select device (distibuted not available)
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
# Check the existence of directories
if not args.summaries_output_dir:
args.summaries_output_dir = args.documents_dir
if not documents_dir_is_valid(args.documents_dir):
raise FileNotFoundError(
"We could not find the directory you specified for the documents to summarize, or it was empty. Please specify a valid path."
)
os.makedirs(args.summaries_output_dir, exist_ok=True)
evaluate(args)
def documents_dir_is_valid(path):
if not os.path.exists(path):
return False
file_list = os.listdir(path)
if len(file_list) == 0:
return False
return True
if __name__ == "__main__":
main()
| 10,188 | 28.278736 | 137 | py |
robust-transformers | robust-transformers-main/examples/research_projects/fsner/setup.py | import setuptools
with open("README.md", "r", encoding="utf-8") as fh:
long_description = fh.read()
setuptools.setup(
name="fsner",
version="0.0.1",
author="msi sayef",
author_email="msi.sayef@gmail.com",
description="Few-shot Named Entity Recognition",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/huggingface/transformers/tree/master/examples/research_projects/fsner",
project_urls={
"Bug Tracker": "https://github.com/huggingface/transformers/issues",
},
classifiers=[
"Programming Language :: Python :: 3",
"Operating System :: OS Independent",
],
package_dir={"": "src"},
packages=setuptools.find_packages(where="src"),
python_requires=">=3.6",
install_requires=["torch>=1.9.0", "transformers>=4.9.2"],
)
| 866 | 29.964286 | 99 | py |
robust-transformers | robust-transformers-main/examples/research_projects/fsner/src/fsner/tokenizer_utils.py | import torch
from transformers import AutoTokenizer
class FSNERTokenizerUtils(object):
def __init__(self, pretrained_model_name_or_path):
self.tokenizer = AutoTokenizer.from_pretrained(pretrained_model_name_or_path)
def tokenize(self, x):
"""
Wrapper function for tokenizing query and supports
Args:
x (`List[str] or List[List[str]]`):
List of strings for query or list of lists of strings for supports.
Returns:
`transformers.tokenization_utils_base.BatchEncoding` dict with additional keys and values for start_token_id, end_token_id and sizes of example lists for each entity type
"""
if isinstance(x, list) and all([isinstance(_x, list) for _x in x]):
d = None
for l in x:
t = self.tokenizer(
l,
padding="max_length",
max_length=384,
truncation=True,
return_tensors="pt",
)
t["sizes"] = torch.tensor([len(l)])
if d is not None:
for k in d.keys():
d[k] = torch.cat((d[k], t[k]), 0)
else:
d = t
d["start_token_id"] = torch.tensor(self.tokenizer.convert_tokens_to_ids("[E]"))
d["end_token_id"] = torch.tensor(self.tokenizer.convert_tokens_to_ids("[/E]"))
elif isinstance(x, list) and all([isinstance(_x, str) for _x in x]):
d = self.tokenizer(
x,
padding="max_length",
max_length=384,
truncation=True,
return_tensors="pt",
)
else:
raise Exception(
"Type of parameter x was not recognized! Only `list of strings` for query or `list of lists of strings` for supports are supported."
)
return d
def extract_entity_from_scores(self, query, W_query, p_start, p_end, thresh=0.70):
"""
Extracts entities from query and scores given a threshold.
Args:
query (`List[str]`):
List of query strings.
W_query (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of query sequence tokens in the vocabulary.
p_start (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Scores of each token as being start token of an entity
p_end (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Scores of each token as being end token of an entity
thresh (`float`):
Score threshold value
Returns:
A list of lists of tuples(decoded entity, score)
"""
final_outputs = []
for idx in range(len(W_query["input_ids"])):
start_indexes = end_indexes = range(p_start.shape[1])
output = []
for start_id in start_indexes:
for end_id in end_indexes:
if start_id < end_id:
output.append(
(
start_id,
end_id,
p_start[idx][start_id].item(),
p_end[idx][end_id].item(),
)
)
output.sort(key=lambda tup: (tup[2] * tup[3]), reverse=True)
temp = []
for k in range(len(output)):
if output[k][2] * output[k][3] >= thresh:
c_start_pos, c_end_pos = output[k][0], output[k][1]
decoded = self.tokenizer.decode(W_query["input_ids"][idx][c_start_pos:c_end_pos])
temp.append((decoded, output[k][2] * output[k][3]))
final_outputs.append(temp)
return final_outputs
| 3,974 | 37.970588 | 182 | py |
robust-transformers | robust-transformers-main/examples/research_projects/fsner/src/fsner/model.py | import torch
from transformers import AutoModel
class FSNERModel(torch.nn.Module):
"""
The FSNER model implements a few-shot named entity recognition method from the paper `Example-Based Named Entity Recognition <https://arxiv.org/abs/2008.10570>`__ by
Morteza Ziyadi, Yuting Sun, Abhishek Goswami, Jade Huang, Weizhu Chen. To identify entity spans in a new domain, it
uses a train-free few-shot learning approach inspired by question-answering.
"""
def __init__(self, pretrained_model_name_or_path="sayef/fsner-bert-base-uncased"):
super(FSNERModel, self).__init__()
self.bert = AutoModel.from_pretrained(pretrained_model_name_or_path, return_dict=True)
self.cos = torch.nn.CosineSimilarity(3, 1e-08)
self.softmax = torch.nn.Softmax(dim=1)
def BERT(self, **inputs):
return self.bert(**inputs).last_hidden_state
def VectorSum(self, token_embeddings):
return token_embeddings.sum(2, keepdim=True)
def Atten(self, q_rep, S_rep, T=1):
return self.softmax(T * self.cos(q_rep, S_rep))
def forward(self, W_query, W_supports):
"""
Find scores of each token being start and end token for an entity.
Args:
W_query (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of query sequence tokens in the vocabulary.
W_supports (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of support sequence tokens in the vocabulary.
Returns:
p_start (`torch.FloatTensor` of shape `(batch_size, sequence_length)`): Scores of each token as
being start token of an entity
p_end (`torch.FloatTensor` of shape `(batch_size, sequence_length)`): Scores of each token as
being end token of an entity
"""
support_sizes = W_supports["sizes"].tolist()
start_token_id = W_supports["start_token_id"].item()
end_token_id = W_supports["end_token_id"].item()
del W_supports["sizes"]
del W_supports["start_token_id"]
del W_supports["end_token_id"]
q = self.BERT(**W_query)
S = self.BERT(**W_supports)
p_starts = None
p_ends = None
start_token_masks = W_supports["input_ids"] == start_token_id
end_token_masks = W_supports["input_ids"] == end_token_id
for i, size in enumerate(support_sizes):
if i == 0:
s = 0
else:
s = support_sizes[i - 1]
s_start = S[s : s + size][start_token_masks[s : s + size]]
s_end = S[s : s + size][end_token_masks[s : s + size]]
p_start = torch.matmul(q[i], s_start.T).sum(1).softmax(0)
p_end = torch.matmul(q[i], s_end.T).sum(1).softmax(0)
if p_starts is not None:
p_starts = torch.vstack((p_starts, p_start))
p_ends = torch.vstack((p_ends, p_end))
else:
p_starts = p_start
p_ends = p_end
return p_starts, p_ends
| 3,100 | 37.283951 | 169 | py |
robust-transformers | robust-transformers-main/examples/research_projects/fsner/src/fsner/__init__.py | from .model import FSNERModel
from .tokenizer_utils import FSNERTokenizerUtils
__all__ = ["FSNERModel", "FSNERTokenizerUtils"]
| 129 | 20.666667 | 48 | py |
robust-transformers | robust-transformers-main/examples/research_projects/adversarial/run_hans.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning the library models for sequence classification on HANS."""
import logging
import os
from dataclasses import dataclass, field
from typing import Dict, List, Optional
import numpy as np
import torch
import transformers
from transformers import (
AutoConfig,
AutoModelForSequenceClassification,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainingArguments,
default_data_collator,
set_seed,
)
from transformers.trainer_utils import is_main_process
from utils_hans import HansDataset, InputFeatures, hans_processors, hans_tasks_num_labels
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
task_name: str = field(
metadata={"help": "The name of the task to train selected in the list: " + ", ".join(hans_processors.keys())}
)
data_dir: str = field(
metadata={"help": "The input data dir. Should contain the .tsv files (or other data files) for the task."}
)
max_seq_length: int = field(
default=128,
metadata={
"help": "The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
def hans_data_collator(features: List[InputFeatures]) -> Dict[str, torch.Tensor]:
"""
Data collator that removes the "pairID" key if present.
"""
batch = default_data_collator(features)
_ = batch.pop("pairID", None)
return batch
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
training_args.local_rank,
training_args.device,
training_args.n_gpu,
bool(training_args.local_rank != -1),
training_args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed
set_seed(training_args.seed)
try:
num_labels = hans_tasks_num_labels[data_args.task_name]
except KeyError:
raise ValueError("Task not found: %s" % (data_args.task_name))
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
finetuning_task=data_args.task_name,
cache_dir=model_args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
model = AutoModelForSequenceClassification.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
# Get datasets
train_dataset = (
HansDataset(
data_dir=data_args.data_dir,
tokenizer=tokenizer,
task=data_args.task_name,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
)
if training_args.do_train
else None
)
eval_dataset = (
HansDataset(
data_dir=data_args.data_dir,
tokenizer=tokenizer,
task=data_args.task_name,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
evaluate=True,
)
if training_args.do_eval
else None
)
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
data_collator=hans_data_collator,
)
# Training
if training_args.do_train:
trainer.train(
model_path=model_args.model_name_or_path if os.path.isdir(model_args.model_name_or_path) else None
)
trainer.save_model()
# For convenience, we also re-save the tokenizer to the same directory,
# so that you can share your model easily on huggingface.co/models =)
if trainer.is_world_master():
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
if training_args.do_eval:
logger.info("*** Evaluate ***")
output = trainer.predict(eval_dataset)
preds = output.predictions
preds = np.argmax(preds, axis=1)
pair_ids = [ex.pairID for ex in eval_dataset]
output_eval_file = os.path.join(training_args.output_dir, "hans_predictions.txt")
label_list = eval_dataset.get_labels()
if trainer.is_world_master():
with open(output_eval_file, "w") as writer:
writer.write("pairID,gold_label\n")
for pid, pred in zip(pair_ids, preds):
writer.write("ex" + str(pid) + "," + label_list[int(pred)] + "\n")
trainer._log(output.metrics)
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| 8,213 | 33.225 | 133 | py |
robust-transformers | robust-transformers-main/examples/research_projects/adversarial/utils_hans.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import os
from dataclasses import dataclass
from typing import List, Optional, Union
import tqdm
from filelock import FileLock
from transformers import (
BartTokenizer,
BartTokenizerFast,
DataProcessor,
PreTrainedTokenizer,
RobertaTokenizer,
RobertaTokenizerFast,
XLMRobertaTokenizer,
is_tf_available,
is_torch_available,
)
logger = logging.getLogger(__name__)
@dataclass(frozen=True)
class InputExample:
"""
A single training/test example for simple sequence classification.
Args:
guid: Unique id for the example.
text_a: string. The untokenized text of the first sequence. For single
sequence tasks, only this sequence must be specified.
text_b: (Optional) string. The untokenized text of the second sequence.
Only must be specified for sequence pair tasks.
label: (Optional) string. The label of the example. This should be
specified for train and dev examples, but not for test examples.
pairID: (Optional) string. Unique identifier for the pair of sentences.
"""
guid: str
text_a: str
text_b: Optional[str] = None
label: Optional[str] = None
pairID: Optional[str] = None
@dataclass(frozen=True)
class InputFeatures:
"""
A single set of features of data.
Property names are the same names as the corresponding inputs to a model.
Args:
input_ids: Indices of input sequence tokens in the vocabulary.
attention_mask: Mask to avoid performing attention on padding token indices.
Mask values selected in ``[0, 1]``:
Usually ``1`` for tokens that are NOT MASKED, ``0`` for MASKED (padded) tokens.
token_type_ids: (Optional) Segment token indices to indicate first and second
portions of the inputs. Only some models use them.
label: (Optional) Label corresponding to the input. Int for classification problems,
float for regression problems.
pairID: (Optional) Unique identifier for the pair of sentences.
"""
input_ids: List[int]
attention_mask: Optional[List[int]] = None
token_type_ids: Optional[List[int]] = None
label: Optional[Union[int, float]] = None
pairID: Optional[int] = None
if is_torch_available():
import torch
from torch.utils.data import Dataset
class HansDataset(Dataset):
"""
This will be superseded by a framework-agnostic approach
soon.
"""
features: List[InputFeatures]
def __init__(
self,
data_dir: str,
tokenizer: PreTrainedTokenizer,
task: str,
max_seq_length: Optional[int] = None,
overwrite_cache=False,
evaluate: bool = False,
):
processor = hans_processors[task]()
cached_features_file = os.path.join(
data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
tokenizer.__class__.__name__,
str(max_seq_length),
task,
),
)
label_list = processor.get_labels()
if tokenizer.__class__ in (
RobertaTokenizer,
RobertaTokenizerFast,
XLMRobertaTokenizer,
BartTokenizer,
BartTokenizerFast,
):
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
self.label_list = label_list
# Make sure only the first process in distributed training processes the dataset,
# and the others will use the cache.
lock_path = cached_features_file + ".lock"
with FileLock(lock_path):
if os.path.exists(cached_features_file) and not overwrite_cache:
logger.info(f"Loading features from cached file {cached_features_file}")
self.features = torch.load(cached_features_file)
else:
logger.info(f"Creating features from dataset file at {data_dir}")
examples = (
processor.get_dev_examples(data_dir) if evaluate else processor.get_train_examples(data_dir)
)
logger.info("Training examples: %s", len(examples))
self.features = hans_convert_examples_to_features(examples, label_list, max_seq_length, tokenizer)
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(self.features, cached_features_file)
def __len__(self):
return len(self.features)
def __getitem__(self, i) -> InputFeatures:
return self.features[i]
def get_labels(self):
return self.label_list
if is_tf_available():
import tensorflow as tf
class TFHansDataset:
"""
This will be superseded by a framework-agnostic approach
soon.
"""
features: List[InputFeatures]
def __init__(
self,
data_dir: str,
tokenizer: PreTrainedTokenizer,
task: str,
max_seq_length: Optional[int] = 128,
overwrite_cache=False,
evaluate: bool = False,
):
processor = hans_processors[task]()
label_list = processor.get_labels()
if tokenizer.__class__ in (
RobertaTokenizer,
RobertaTokenizerFast,
XLMRobertaTokenizer,
BartTokenizer,
BartTokenizerFast,
):
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
self.label_list = label_list
examples = processor.get_dev_examples(data_dir) if evaluate else processor.get_train_examples(data_dir)
self.features = hans_convert_examples_to_features(examples, label_list, max_seq_length, tokenizer)
def gen():
for (ex_index, ex) in tqdm.tqdm(enumerate(self.features), desc="convert examples to features"):
if ex_index % 10000 == 0:
logger.info("Writing example %d of %d" % (ex_index, len(examples)))
yield (
{
"example_id": 0,
"input_ids": ex.input_ids,
"attention_mask": ex.attention_mask,
"token_type_ids": ex.token_type_ids,
},
ex.label,
)
self.dataset = tf.data.Dataset.from_generator(
gen,
(
{
"example_id": tf.int32,
"input_ids": tf.int32,
"attention_mask": tf.int32,
"token_type_ids": tf.int32,
},
tf.int64,
),
(
{
"example_id": tf.TensorShape([]),
"input_ids": tf.TensorShape([None, None]),
"attention_mask": tf.TensorShape([None, None]),
"token_type_ids": tf.TensorShape([None, None]),
},
tf.TensorShape([]),
),
)
def get_dataset(self):
return self.dataset
def __len__(self):
return len(self.features)
def __getitem__(self, i) -> InputFeatures:
return self.features[i]
def get_labels(self):
return self.label_list
class HansProcessor(DataProcessor):
"""Processor for the HANS data set."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(self._read_tsv(os.path.join(data_dir, "heuristics_train_set.txt")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(self._read_tsv(os.path.join(data_dir, "heuristics_evaluation_set.txt")), "dev")
def get_labels(self):
"""See base class.
Note that we follow the standard three labels for MNLI
(see :class:`~transformers.data.processors.utils.MnliProcessor`)
but the HANS evaluation groups `contradiction` and `neutral` into `non-entailment` (label 0) while
`entailment` is label 1."""
return ["contradiction", "entailment", "neutral"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
if i == 0:
continue
guid = "%s-%s" % (set_type, line[0])
text_a = line[5]
text_b = line[6]
pairID = line[7][2:] if line[7].startswith("ex") else line[7]
label = line[0]
examples.append(InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label, pairID=pairID))
return examples
def hans_convert_examples_to_features(
examples: List[InputExample],
label_list: List[str],
max_length: int,
tokenizer: PreTrainedTokenizer,
):
"""
Loads a data file into a list of ``InputFeatures``
Args:
examples: List of ``InputExamples`` containing the examples.
label_list: List of labels. Can be obtained from the processor using the ``processor.get_labels()`` method.
max_length: Maximum example length.
tokenizer: Instance of a tokenizer that will tokenize the examples.
Returns:
A list of task-specific ``InputFeatures`` which can be fed to the model.
"""
label_map = {label: i for i, label in enumerate(label_list)}
features = []
for (ex_index, example) in tqdm.tqdm(enumerate(examples), desc="convert examples to features"):
if ex_index % 10000 == 0:
logger.info("Writing example %d" % (ex_index))
inputs = tokenizer(
example.text_a,
example.text_b,
add_special_tokens=True,
max_length=max_length,
padding="max_length",
truncation=True,
return_overflowing_tokens=True,
)
label = label_map[example.label] if example.label in label_map else 0
pairID = int(example.pairID)
features.append(InputFeatures(**inputs, label=label, pairID=pairID))
for i, example in enumerate(examples[:5]):
logger.info("*** Example ***")
logger.info(f"guid: {example}")
logger.info(f"features: {features[i]}")
return features
hans_tasks_num_labels = {
"hans": 3,
}
hans_processors = {
"hans": HansProcessor,
}
| 11,767 | 33.510264 | 118 | py |
robust-transformers | robust-transformers-main/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_streaming.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers CTC model for automatic speech recognition in streaming mode"""
import logging
import os
import re
import sys
import warnings
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import datasets
import numpy as np
import torch
from datasets import IterableDatasetDict, interleave_datasets, load_dataset, load_metric
from torch.utils.data import IterableDataset
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForCTC,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainerCallback,
TrainingArguments,
Wav2Vec2Processor,
set_seed,
)
from transformers.trainer_pt_utils import IterableDatasetShard
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risk.
check_min_version("4.17.0.dev0")
require_version("datasets>=1.18.2", "To fix: pip install 'datasets>=1.18.2'")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": "Probability of each feature vector along the time axis to be chosen as the start of the vector"
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature"
"vectors will be masked along the time axis."
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": "Probability of each feature vector along the feature axis to be chosen as the start of the vector"
"span to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature bins will be masked along the time axis."
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
dataset_config_name: str = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: str = field(
default="train+validation",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to "
"'train+validation'"
},
)
eval_split_name: str = field(
default="test",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'test'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
text_column_name: str = field(
default="text",
metadata={"help": "The name of the dataset column containing the text data. Defaults to 'text'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": "For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": "For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
},
)
shuffle_buffer_size: Optional[int] = field(
default=500,
metadata={
"help": "The number of streamed examples to download before shuffling them. The large the buffer, "
"the closer it is to real offline shuffling."
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=None,
metadata={"help": "A list of characters to remove from the transcripts."},
)
eval_metrics: List[str] = list_field(
default=["wer"],
metadata={"help": "A list of metrics the model should be evaluated on. E.g. `'wer cer'`"},
)
max_duration_in_seconds: float = field(
default=20.0,
metadata={"help": "Filter audio files that are longer than `max_duration_in_seconds` seconds."},
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": "Whether to only do data preprocessing and skip training. "
"This is especially useful when data preprocessing errors out in distributed training due to timeout. "
"In this case, one should run the preprocessing in a non-distributed setup with `preprocessing_only=True` "
"so that the cached datasets can consequently be loaded in distributed training"
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": "If :obj:`True`, will use the token generated when running"
":obj:`transformers-cli login` as HTTP bearer authorization for remote files."
},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": "The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
},
)
@dataclass
class DataCollatorCTCWithPadding:
"""
Data collator that will dynamically pad the inputs received.
Args:
processor (:class:`~transformers.AutoProcessor`)
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
max_length_labels (:obj:`int`, `optional`):
Maximum length of the ``labels`` returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
processor: AutoProcessor
padding: Union[bool, str] = "longest"
max_length: Optional[int] = None
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lenghts and need
# different padding methods
input_features = []
label_features = []
for feature in features:
if self.max_length and feature["input_values"].shape[-1] > self.max_length:
continue
input_features.append({"input_values": feature["input_values"]})
label_features.append({"input_ids": feature["labels"]})
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
with self.processor.as_target_processor():
labels_batch = self.processor.pad(
label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
batch["labels"] = labels
return batch
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = IterableDatasetDict()
raw_column_names = {}
def load_streaming_dataset(split, sampling_rate, **kwargs):
if "+" in split:
dataset_splits = [load_dataset(split=split_name, **kwargs) for split_name in split.split("+")]
# `features` and `cast_column` won't be available after interleaving, so we'll use them here
features = dataset_splits[0].features
# make sure that the dataset decodes audio with a correct sampling rate
dataset_splits = [
dataset.cast_column(data_args.audio_column_name, datasets.features.Audio(sampling_rate=sampling_rate))
for dataset in dataset_splits
]
interleaved_dataset = interleave_datasets(dataset_splits)
return interleaved_dataset, features
else:
dataset = load_dataset(split=split, **kwargs)
features = dataset.features
# make sure that the dataset decodes audio with a correct sampling rate
dataset = dataset.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=sampling_rate)
)
return dataset, features
# `datasets` takes care of automatically loading and resampling the audio,
# so we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_auth_token=data_args.use_auth_token
)
if training_args.do_train:
raw_datasets["train"], train_features = load_streaming_dataset(
path=data_args.dataset_name,
name=data_args.dataset_config_name,
split=data_args.train_split_name,
use_auth_token=data_args.use_auth_token,
streaming=True,
sampling_rate=feature_extractor.sampling_rate,
)
raw_column_names["train"] = list(train_features.keys())
if data_args.audio_column_name not in raw_column_names["train"]:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--audio_column_name` to the correct audio column - one of "
f"{', '.join(raw_column_names['train'])}."
)
if data_args.text_column_name not in raw_column_names["train"]:
raise ValueError(
f"--text_column_name {data_args.text_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--text_column_name` to the correct text column - one of "
f"{', '.join(raw_column_names['train'])}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].take(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"], eval_features = load_streaming_dataset(
path=data_args.dataset_name,
name=data_args.dataset_config_name,
split=data_args.eval_split_name,
use_auth_token=data_args.use_auth_token,
streaming=True,
sampling_rate=feature_extractor.sampling_rate,
)
raw_column_names["eval"] = list(eval_features.keys())
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].take(range(data_args.max_eval_samples))
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
text_column_name = data_args.text_column_name
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[text_column_name]).lower() + " "
else:
batch["target_text"] = batch[text_column_name].lower() + " "
return batch
with training_args.main_process_first(desc="dataset map special characters removal"):
for split, dataset in raw_datasets.items():
raw_datasets[split] = dataset.map(
remove_special_characters,
).remove_columns([text_column_name])
# 3. Next, let's load the config as we might need it to create
# the tokenizer
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_auth_token=data_args.use_auth_token
)
# 4. Now we can instantiate the tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
tokenizer_name_or_path = model_args.tokenizer_name_or_path
if tokenizer_name_or_path is None:
raise ValueError(
"Tokenizer has to be created before training in streaming mode. Please specify --tokenizer_name_or_path"
)
# load feature_extractor and tokenizer
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
config=config,
use_auth_token=data_args.use_auth_token,
)
# adapt config
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"pad_token_id": tokenizer.pad_token_id,
"vocab_size": len(tokenizer),
"activation_dropout": model_args.activation_dropout,
}
)
# create model
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
use_auth_token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 5. Now we preprocess the datasets including loading the audio, resampling and normalization
audio_column_name = data_args.audio_column_name
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["input_length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
return batch
vectorized_datasets = IterableDatasetDict()
with training_args.main_process_first(desc="dataset map preprocessing"):
for split, dataset in raw_datasets.items():
vectorized_datasets[split] = (
dataset.map(prepare_dataset)
.remove_columns(raw_column_names[split] + ["target_text"])
.with_format("torch")
)
if split == "train":
vectorized_datasets[split] = vectorized_datasets[split].shuffle(
buffer_size=data_args.shuffle_buffer_size,
seed=training_args.seed,
)
# 6. Next, we can prepare the training.
# Let's use word error rate (WER) as our evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metrics = {metric: load_metric(metric) for metric in data_args.eval_metrics}
def compute_metrics(pred):
pred_logits = pred.predictions
pred_ids = np.argmax(pred_logits, axis=-1)
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred_ids)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metrics = {k: v.compute(predictions=pred_str, references=label_str) for k, v in eval_metrics.items()}
return metrics
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
try:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
except (OSError, KeyError):
warnings.warn(
"Loading a processor from a feature extractor config that does not"
" include a `processor_class` attribute is deprecated and will be removed in v5. Please add the following "
" attribute to your `preprocessor_config.json` file to suppress this warning: "
" `'processor_class': 'Wav2Vec2Processor'`",
FutureWarning,
)
processor = Wav2Vec2Processor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
data_collator = DataCollatorCTCWithPadding(processor=processor, max_length=max_input_length)
# trainer callback to reinitialize and reshuffle the streamable datasets at the beginning of each epoch
class ShuffleCallback(TrainerCallback):
def on_epoch_begin(self, args, state, control, train_dataloader, **kwargs):
if isinstance(train_dataloader.dataset, IterableDatasetShard):
pass # set_epoch() is handled by the Trainer
elif isinstance(train_dataloader.dataset, IterableDataset):
train_dataloader.dataset.set_epoch(train_dataloader.dataset._epoch + 1)
# Initialize Trainer
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
compute_metrics=compute_metrics,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=processor,
callbacks=[ShuffleCallback()],
)
# 7. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
if data_args.max_train_samples:
metrics["train_samples"] = data_args.max_train_samples
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
if data_args.max_eval_samples:
metrics["eval_samples"] = data_args.max_eval_samples
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Write model card and (optionally) push to hub
config_name = data_args.dataset_config_name if data_args.dataset_config_name is not None else "na"
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": "speech-recognition",
"tags": ["automatic-speech-recognition", data_args.dataset_name],
"dataset_args": f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split: {data_args.eval_split_name}",
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
}
if "common_voice" in data_args.dataset_name:
kwargs["language"] = config_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
| 27,868 | 41.225758 | 158 | py |
robust-transformers | robust-transformers-main/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_bnb.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers CTC model for automatic speech recognition"""
import functools
import json
import logging
import os
import re
import sys
import warnings
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import datasets
import numpy as np
import torch
from datasets import DatasetDict, load_dataset, load_metric
import bitsandbytes as bnb
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForCTC,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainingArguments,
Wav2Vec2Processor,
set_seed,
)
from transformers.trainer_pt_utils import get_parameter_names
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.16.0.dev0")
require_version("datasets>=1.13.3", "To fix: pip install -r examples/pytorch/text-classification/requirements.txt")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": "Probability of each feature vector along the time axis to be chosen as the start of the vector"
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature"
"vectors will be masked along the time axis."
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": "Probability of each feature vector along the feature axis to be chosen as the start of the vector"
"span to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature bins will be masked along the time axis."
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
dataset_config_name: str = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: str = field(
default="train+validation",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
eval_split_name: str = field(
default="test",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
text_column_name: str = field(
default="text",
metadata={"help": "The name of the dataset column containing the text data. Defaults to 'text'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": "For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": "For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=None,
metadata={"help": "A list of characters to remove from the transcripts."},
)
eval_metrics: List[str] = list_field(
default=["wer"],
metadata={"help": "A list of metrics the model should be evaluated on. E.g. `'wer cer'`"},
)
max_duration_in_seconds: float = field(
default=20.0,
metadata={
"help": "Filter audio files that are longer than `max_duration_in_seconds` seconds to 'max_duration_in_seconds`"
},
)
min_duration_in_seconds: float = field(
default=0.0, metadata={"help": "Filter audio files that are shorter than `min_duration_in_seconds` seconds"}
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": "Whether to only do data preprocessing and skip training. "
"This is especially useful when data preprocessing errors out in distributed training due to timeout. "
"In this case, one should run the preprocessing in a non-distributed setup with `preprocessing_only=True` "
"so that the cached datasets can consequently be loaded in distributed training"
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": "If :obj:`True`, will use the token generated when running"
":obj:`transformers-cli login` as HTTP bearer authorization for remote files."
},
)
unk_token: str = field(
default="[UNK]",
metadata={"help": "The unk token for the tokenizer"},
)
pad_token: str = field(
default="[PAD]",
metadata={"help": "The padding token for the tokenizer"},
)
word_delimiter_token: str = field(
default="|",
metadata={"help": "The word delimiter token for the tokenizer"},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": "The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
},
)
@dataclass
class DataCollatorCTCWithPadding:
"""
Data collator that will dynamically pad the inputs received.
Args:
processor (:class:`~transformers.AutoProcessor`)
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
max_length_labels (:obj:`int`, `optional`):
Maximum length of the ``labels`` returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
processor: AutoProcessor
padding: Union[bool, str] = "longest"
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lenghts and need
# different padding methods
input_features = [{"input_values": feature["input_values"]} for feature in features]
label_features = [{"input_ids": feature["labels"]} for feature in features]
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
with self.processor.as_target_processor():
labels_batch = self.processor.pad(
label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
batch["labels"] = labels
return batch
def create_vocabulary_from_data(
datasets: DatasetDict,
word_delimiter_token: Optional[str] = None,
unk_token: Optional[str] = None,
pad_token: Optional[str] = None,
):
# Given training and test labels create vocabulary
def extract_all_chars(batch):
all_text = " ".join(batch["target_text"])
vocab = list(set(all_text))
return {"vocab": [vocab], "all_text": [all_text]}
vocabs = datasets.map(
extract_all_chars,
batched=True,
batch_size=-1,
keep_in_memory=True,
remove_columns=datasets["train"].column_names,
)
# take union of all unique characters in each dataset
vocab_set = functools.reduce(
lambda vocab_1, vocab_2: set(vocab_1["vocab"][0]) | set(vocab_2["vocab"][0]), vocabs.values()
)
vocab_dict = {v: k for k, v in enumerate(sorted(list(vocab_set)))}
# replace white space with delimiter token
if word_delimiter_token is not None:
vocab_dict[word_delimiter_token] = vocab_dict[" "]
del vocab_dict[" "]
# add unk and pad token
if unk_token is not None:
vocab_dict[unk_token] = len(vocab_dict)
if pad_token is not None:
vocab_dict[pad_token] = len(vocab_dict)
return vocab_dict
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = DatasetDict()
if training_args.do_train:
raw_datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=data_args.train_split_name,
use_auth_token=data_args.use_auth_token,
)
if data_args.audio_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--audio_column_name` to the correct audio column - one of "
f"{', '.join(raw_datasets['train'].column_names)}."
)
if data_args.text_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--text_column_name {data_args.text_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--text_column_name` to the correct text column - one of "
f"{', '.join(raw_datasets['train'].column_names)}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].select(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=data_args.eval_split_name,
use_auth_token=data_args.use_auth_token,
)
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].select(range(data_args.max_eval_samples))
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
text_column_name = data_args.text_column_name
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[text_column_name]).lower() + " "
else:
batch["target_text"] = batch[text_column_name].lower() + " "
return batch
with training_args.main_process_first(desc="dataset map special characters removal"):
raw_datasets = raw_datasets.map(
remove_special_characters,
remove_columns=[text_column_name],
desc="remove special characters from datasets",
)
# save special tokens for tokenizer
word_delimiter_token = data_args.word_delimiter_token
unk_token = data_args.unk_token
pad_token = data_args.pad_token
# 3. Next, let's load the config as we might need it to create
# the tokenizer
# load config
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_auth_token=data_args.use_auth_token
)
# 4. Next, if no tokenizer file is defined,
# we create the vocabulary of the model by extracting all unique characters from
# the training and evaluation datasets
# We need to make sure that only first rank saves vocabulary
# make sure all processes wait until vocab is created
tokenizer_name_or_path = model_args.tokenizer_name_or_path
tokenizer_kwargs = {}
if tokenizer_name_or_path is None:
# save vocab in training output dir
tokenizer_name_or_path = training_args.output_dir
vocab_file = os.path.join(tokenizer_name_or_path, "vocab.json")
with training_args.main_process_first():
if training_args.overwrite_output_dir and os.path.isfile(vocab_file):
os.remove(vocab_file)
with training_args.main_process_first(desc="dataset map vocabulary creation"):
if not os.path.isfile(vocab_file):
os.makedirs(tokenizer_name_or_path, exist_ok=True)
vocab_dict = create_vocabulary_from_data(
raw_datasets,
word_delimiter_token=word_delimiter_token,
unk_token=unk_token,
pad_token=pad_token,
)
# save vocab dict to be loaded into tokenizer
with open(vocab_file, "w") as file:
json.dump(vocab_dict, file)
# if tokenizer has just been created
# it is defined by `tokenizer_class` if present in config else by `model_type`
tokenizer_kwargs = {
"config": config if config.tokenizer_class is not None else None,
"tokenizer_type": config.model_type if config.tokenizer_class is None else None,
"unk_token": unk_token,
"pad_token": pad_token,
"word_delimiter_token": word_delimiter_token,
}
# 5. Now we can instantiate the feature extractor, tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
# load feature_extractor and tokenizer
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
use_auth_token=data_args.use_auth_token,
**tokenizer_kwargs,
)
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_auth_token=data_args.use_auth_token
)
# adapt config
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"pad_token_id": tokenizer.pad_token_id,
"vocab_size": len(tokenizer),
"activation_dropout": model_args.activation_dropout,
}
)
# create model
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
use_auth_token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 6. Now we preprocess the datasets including loading the audio, resampling and normalization
# Thankfully, `datasets` takes care of automatically loading and resampling the audio,
# so that we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
# make sure that dataset decodes audio with correct sampling rate
dataset_sampling_rate = next(iter(raw_datasets.values())).features[data_args.audio_column_name].sampling_rate
if dataset_sampling_rate != feature_extractor.sampling_rate:
raw_datasets = raw_datasets.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=feature_extractor.sampling_rate)
)
# derive max & min input length for sample rate & max duration
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
min_input_length = data_args.min_duration_in_seconds * feature_extractor.sampling_rate
audio_column_name = data_args.audio_column_name
num_workers = data_args.preprocessing_num_workers
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["input_length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
return batch
with training_args.main_process_first(desc="dataset map preprocessing"):
vectorized_datasets = raw_datasets.map(
prepare_dataset,
remove_columns=next(iter(raw_datasets.values())).column_names,
num_proc=num_workers,
desc="preprocess datasets",
)
def is_audio_in_length_range(length):
return length > min_input_length and length < max_input_length
# filter data that is shorter than min_input_length
vectorized_datasets = vectorized_datasets.filter(
is_audio_in_length_range,
num_proc=num_workers,
input_columns=["input_length"],
)
# 7. Next, we can prepare the training.
# Let's use word error rate (WER) as our evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metrics = {metric: load_metric(metric) for metric in data_args.eval_metrics}
# for large datasets it is advised to run the preprocessing on a
# single machine first with ``args.preprocessing_only`` since there will mostly likely
# be a timeout when running the script in distributed mode.
# In a second step ``args.preprocessing_only`` can then be set to `False` to load the
# cached dataset
if data_args.preprocessing_only:
logger.info(f"Data preprocessing finished. Files cached at {vectorized_datasets.cache_files}")
return
def compute_metrics(pred):
pred_logits = pred.predictions
pred_ids = np.argmax(pred_logits, axis=-1)
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred_ids)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metrics = {k: v.compute(predictions=pred_str, references=label_str) for k, v in eval_metrics.items()}
return metrics
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
try:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
except (OSError, KeyError):
warnings.warn(
"Loading a processor from a feature extractor config that does not"
" include a `processor_class` attribute is deprecated and will be removed in v5. Please add the following "
" attribute to your `preprocessor_config.json` file to suppress this warning: "
" `'processor_class': 'Wav2Vec2Processor'`",
FutureWarning,
)
processor = Wav2Vec2Processor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
data_collator = DataCollatorCTCWithPadding(processor=processor)
decay_parameters = get_parameter_names(model, [torch.nn.LayerNorm])
decay_parameters = [name for name in decay_parameters if "bias" not in name]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if n in decay_parameters],
"weight_decay": training_args.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if n not in decay_parameters],
"weight_decay": 0.0,
},
]
optimizer = bnb.optim.Adam8bit(
params=optimizer_grouped_parameters,
lr=training_args.learning_rate,
betas=(training_args.adam_beta1, training_args.adam_beta2),
eps=training_args.adam_epsilon,
)
optimizers = (optimizer, None)
# Initialize Trainer
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
compute_metrics=compute_metrics,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=feature_extractor,
optimizers=optimizers,
)
# 8. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples
if data_args.max_train_samples is not None
else len(vectorized_datasets["train"])
)
metrics["train_samples"] = min(max_train_samples, len(vectorized_datasets["train"]))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
max_eval_samples = (
data_args.max_eval_samples if data_args.max_eval_samples is not None else len(vectorized_datasets["eval"])
)
metrics["eval_samples"] = min(max_eval_samples, len(vectorized_datasets["eval"]))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Write model card and (optionally) push to hub
config_name = data_args.dataset_config_name if data_args.dataset_config_name is not None else "na"
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": "speech-recognition",
"tags": ["automatic-speech-recognition", data_args.dataset_name],
"dataset_args": f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split: {data_args.eval_split_name}",
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
}
if "common_voice" in data_args.dataset_name:
kwargs["language"] = config_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
| 31,246 | 40.006562 | 158 | py |
robust-transformers | robust-transformers-main/examples/research_projects/robust-speech-event/eval.py | #!/usr/bin/env python3
import argparse
import re
from typing import Dict
import torch
from datasets import Audio, Dataset, load_dataset, load_metric
from transformers import AutoFeatureExtractor, pipeline
def log_results(result: Dataset, args: Dict[str, str]):
"""DO NOT CHANGE. This function computes and logs the result metrics."""
log_outputs = args.log_outputs
dataset_id = "_".join(args.dataset.split("/") + [args.config, args.split])
# load metric
wer = load_metric("wer")
cer = load_metric("cer")
# compute metrics
wer_result = wer.compute(references=result["target"], predictions=result["prediction"])
cer_result = cer.compute(references=result["target"], predictions=result["prediction"])
# print & log results
result_str = f"WER: {wer_result}\n" f"CER: {cer_result}"
print(result_str)
with open(f"{dataset_id}_eval_results.txt", "w") as f:
f.write(result_str)
# log all results in text file. Possibly interesting for analysis
if log_outputs is not None:
pred_file = f"log_{dataset_id}_predictions.txt"
target_file = f"log_{dataset_id}_targets.txt"
with open(pred_file, "w") as p, open(target_file, "w") as t:
# mapping function to write output
def write_to_file(batch, i):
p.write(f"{i}" + "\n")
p.write(batch["prediction"] + "\n")
t.write(f"{i}" + "\n")
t.write(batch["target"] + "\n")
result.map(write_to_file, with_indices=True)
def normalize_text(text: str) -> str:
"""DO ADAPT FOR YOUR USE CASE. this function normalizes the target text."""
chars_to_ignore_regex = '[,?.!\-\;\:"“%‘”�—’…–]' # noqa: W605 IMPORTANT: this should correspond to the chars that were ignored during training
text = re.sub(chars_to_ignore_regex, "", text.lower())
# In addition, we can normalize the target text, e.g. removing new lines characters etc...
# note that order is important here!
token_sequences_to_ignore = ["\n\n", "\n", " ", " "]
for t in token_sequences_to_ignore:
text = " ".join(text.split(t))
return text
def main(args):
# load dataset
dataset = load_dataset(args.dataset, args.config, split=args.split, use_auth_token=True)
# for testing: only process the first two examples as a test
# dataset = dataset.select(range(10))
# load processor
feature_extractor = AutoFeatureExtractor.from_pretrained(args.model_id)
sampling_rate = feature_extractor.sampling_rate
# resample audio
dataset = dataset.cast_column("audio", Audio(sampling_rate=sampling_rate))
# load eval pipeline
if args.device is None:
args.device = 0 if torch.cuda.is_available() else -1
asr = pipeline("automatic-speech-recognition", model=args.model_id, device=args.device)
# map function to decode audio
def map_to_pred(batch):
prediction = asr(
batch["audio"]["array"], chunk_length_s=args.chunk_length_s, stride_length_s=args.stride_length_s
)
batch["prediction"] = prediction["text"]
batch["target"] = normalize_text(batch["sentence"])
return batch
# run inference on all examples
result = dataset.map(map_to_pred, remove_columns=dataset.column_names)
# compute and log_results
# do not change function below
log_results(result, args)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_id", type=str, required=True, help="Model identifier. Should be loadable with 🤗 Transformers"
)
parser.add_argument(
"--dataset",
type=str,
required=True,
help="Dataset name to evaluate the `model_id`. Should be loadable with 🤗 Datasets",
)
parser.add_argument(
"--config", type=str, required=True, help="Config of the dataset. *E.g.* `'en'` for Common Voice"
)
parser.add_argument("--split", type=str, required=True, help="Split of the dataset. *E.g.* `'test'`")
parser.add_argument(
"--chunk_length_s", type=float, default=None, help="Chunk length in seconds. Defaults to 5 seconds."
)
parser.add_argument(
"--stride_length_s", type=float, default=None, help="Stride of the audio chunks. Defaults to 1 second."
)
parser.add_argument(
"--log_outputs", action="store_true", help="If defined, write outputs to log file for analysis."
)
parser.add_argument(
"--device",
type=int,
default=None,
help="The device to run the pipeline on. -1 for CPU (default), 0 for the first GPU and so on.",
)
args = parser.parse_args()
main(args)
| 4,716 | 33.181159 | 147 | py |
robust-transformers | robust-transformers-main/examples/research_projects/performer/run_mlm_performer.py | # coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for masked language modeling (BERT, ALBERT, RoBERTa...) with whole word masking on a
text file or a dataset.
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=fill-mask
"""
import logging
import os
import sys
from dataclasses import dataclass, field
# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
from pathlib import Path
from typing import Dict, List, Optional, Tuple
import numpy as np
from datasets import load_dataset
from tqdm import tqdm
import jax
import jax.numpy as jnp
from flax import jax_utils
from flax.optim import Adam
from flax.training import common_utils
from flax.training.common_utils import get_metrics
from jax.nn import log_softmax
from modeling_flax_performer import FlaxPerformerForMaskedLM
from transformers import (
MODEL_FOR_MASKED_LM_MAPPING,
AutoTokenizer,
BertConfig,
FlaxBertForMaskedLM,
HfArgumentParser,
PreTrainedTokenizerBase,
TensorType,
TrainingArguments,
is_tensorboard_available,
set_seed,
)
# Cache the result
has_tensorboard = is_tensorboard_available()
if has_tensorboard:
try:
from flax.metrics.tensorboard import SummaryWriter
except ImportError as ie:
has_tensorboard = False
print(f"Unable to display metrics through TensorBoard because some package are not installed: {ie}")
else:
print(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
MODEL_CONFIG_CLASSES = list(MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class WandbArguments:
"""
Arguments for logging
"""
wandb_user_name: Optional[str] = field(
default=None,
metadata={"help": "The WandB user name for potential logging. If left None, no logging"},
)
wandb_project_name: Optional[str] = field(
default="performer-experiments",
metadata={"help": "The WandB project name for potential logging"},
)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": "The model checkpoint for weights initialization."
"Don't set if you want to train a model from scratch."
},
)
performer: bool = field(
default=False,
metadata={"help": "Whether to use FAVOR+ attention"},
)
reinitialize: bool = field(
default=False,
metadata={"help": "Whether to use a blank model without pretraining"},
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": "The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated. Default to the max input length of the model."
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for masked language modeling loss"}
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": "Whether to pad all samples to `max_seq_length`. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch."
},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
# Adapted from transformers/data/data_collator.py
# Letting here for now, let's discuss where it should live
@dataclass
class FlaxDataCollatorForLanguageModeling:
"""
Data collator used for language modeling. Inputs are dynamically padded to the maximum length of a batch if they
are not all of the same length.
Args:
tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
The tokenizer used for encoding the data.
mlm (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to use masked language modeling. If set to :obj:`False`, the labels are the same as the
inputs with the padding tokens ignored (by setting them to -100). Otherwise, the labels are -100 for
non-masked tokens and the value to predict for the masked token.
mlm_probability (:obj:`float`, `optional`, defaults to 0.15):
The probability with which to (randomly) mask tokens in the input, when :obj:`mlm` is set to :obj:`True`.
.. note::
For best performance, this data collator should be used with a dataset having items that are dictionaries or
BatchEncoding, with the :obj:`"special_tokens_mask"` key, as returned by a
:class:`~transformers.PreTrainedTokenizer` or a :class:`~transformers.PreTrainedTokenizerFast` with the
argument :obj:`return_special_tokens_mask=True`.
"""
tokenizer: PreTrainedTokenizerBase
mlm: bool = True
mlm_probability: float = 0.15
def __post_init__(self):
if self.mlm and self.tokenizer.mask_token is None:
raise ValueError(
"This tokenizer does not have a mask token which is necessary for masked language modeling. "
"You should pass `mlm=False` to train on causal language modeling instead."
)
def __call__(self, examples: List[Dict[str, np.ndarray]], pad_to_multiple_of: int) -> Dict[str, np.ndarray]:
# Handle dict or lists with proper padding and conversion to tensor.
batch = self.tokenizer.pad(examples, pad_to_multiple_of=pad_to_multiple_of, return_tensors=TensorType.NUMPY)
# If special token mask has been preprocessed, pop it from the dict.
special_tokens_mask = batch.pop("special_tokens_mask", None)
if self.mlm:
batch["input_ids"], batch["labels"] = self.mask_tokens(
batch["input_ids"], special_tokens_mask=special_tokens_mask
)
else:
labels = batch["input_ids"].copy()
if self.tokenizer.pad_token_id is not None:
labels[labels == self.tokenizer.pad_token_id] = -100
batch["labels"] = labels
return batch
def mask_tokens(
self, inputs: np.ndarray, special_tokens_mask: Optional[np.ndarray]
) -> Tuple[jnp.ndarray, jnp.ndarray]:
"""
Prepare masked tokens inputs/labels for masked language modeling: 80% MASK, 10% random, 10% original.
"""
labels = inputs.copy()
# We sample a few tokens in each sequence for MLM training (with probability `self.mlm_probability`)
probability_matrix = np.full(labels.shape, self.mlm_probability)
special_tokens_mask = special_tokens_mask.astype("bool")
probability_matrix[special_tokens_mask] = 0.0
masked_indices = np.random.binomial(1, probability_matrix).astype("bool")
labels[~masked_indices] = -100 # We only compute loss on masked tokens
# 80% of the time, we replace masked input tokens with tokenizer.mask_token ([MASK])
indices_replaced = np.random.binomial(1, np.full(labels.shape, 0.8)).astype("bool") & masked_indices
inputs[indices_replaced] = self.tokenizer.convert_tokens_to_ids(self.tokenizer.mask_token)
# 10% of the time, we replace masked input tokens with random word
indices_random = np.random.binomial(1, np.full(labels.shape, 0.5)).astype("bool")
indices_random &= masked_indices & ~indices_replaced
random_words = np.random.randint(self.tokenizer.vocab_size, size=labels.shape, dtype="i4")
inputs[indices_random] = random_words[indices_random]
# The rest of the time (10% of the time) we keep the masked input tokens unchanged
return inputs, labels
def create_learning_rate_scheduler(
factors="constant * linear_warmup * rsqrt_decay",
base_learning_rate=0.5,
warmup_steps=1000,
decay_factor=0.5,
steps_per_decay=20000,
steps_per_cycle=100000,
):
"""Creates learning rate schedule.
Interprets factors in the factors string which can consist of:
* constant: interpreted as the constant value,
* linear_warmup: interpreted as linear warmup until warmup_steps,
* rsqrt_decay: divide by square root of max(step, warmup_steps)
* rsqrt_normalized_decay: divide by square root of max(step/warmup_steps, 1)
* decay_every: Every k steps decay the learning rate by decay_factor.
* cosine_decay: Cyclic cosine decay, uses steps_per_cycle parameter.
Args:
factors: string, factors separated by "*" that defines the schedule.
base_learning_rate: float, the starting constant for the lr schedule.
warmup_steps: int, how many steps to warm up for in the warmup schedule.
decay_factor: float, the amount to decay the learning rate by.
steps_per_decay: int, how often to decay the learning rate.
steps_per_cycle: int, steps per cycle when using cosine decay.
Returns:
a function learning_rate(step): float -> {"learning_rate": float}, the
step-dependent lr.
"""
factors = [n.strip() for n in factors.split("*")]
def step_fn(step):
"""Step to learning rate function."""
ret = 1.0
for name in factors:
if name == "constant":
ret *= base_learning_rate
elif name == "linear_warmup":
ret *= jnp.minimum(1.0, step / warmup_steps)
elif name == "rsqrt_decay":
ret /= jnp.sqrt(jnp.maximum(step, warmup_steps))
elif name == "rsqrt_normalized_decay":
ret *= jnp.sqrt(warmup_steps)
ret /= jnp.sqrt(jnp.maximum(step, warmup_steps))
elif name == "decay_every":
ret *= decay_factor ** (step // steps_per_decay)
elif name == "cosine_decay":
progress = jnp.maximum(0.0, (step - warmup_steps) / float(steps_per_cycle))
ret *= jnp.maximum(0.0, 0.5 * (1.0 + jnp.cos(jnp.pi * (progress % 1.0))))
else:
raise ValueError("Unknown factor %s." % name)
return jnp.asarray(ret, dtype=jnp.float32)
return step_fn
def compute_metrics(logits, labels, weights, label_smoothing=0.0):
"""Compute summary metrics."""
loss, normalizer = cross_entropy(logits, labels, weights, label_smoothing)
acc, _ = accuracy(logits, labels, weights)
metrics = {"loss": loss, "accuracy": acc, "normalizer": normalizer}
metrics = jax.lax.psum(metrics, axis_name="batch")
return metrics
def accuracy(logits, targets, weights=None):
"""Compute weighted accuracy for log probs and targets.
Args:
logits: [batch, length, num_classes] float array.
targets: categorical targets [batch, length] int array.
weights: None or array of shape [batch, length]
Returns:
Tuple of scalar loss and batch normalizing factor.
"""
if logits.ndim != targets.ndim + 1:
raise ValueError(
"Incorrect shapes. Got shape %s logits and %s targets" % (str(logits.shape), str(targets.shape))
)
loss = jnp.equal(jnp.argmax(logits, axis=-1), targets)
loss *= weights
return loss.sum(), weights.sum()
def cross_entropy(logits, targets, weights=None, label_smoothing=0.0):
"""Compute cross entropy and entropy for log probs and targets.
Args:
logits: [batch, length, num_classes] float array.
targets: categorical targets [batch, length] int array.
weights: None or array of shape [batch, length]
label_smoothing: label smoothing constant, used to determine the on and off values.
Returns:
Tuple of scalar loss and batch normalizing factor.
"""
if logits.ndim != targets.ndim + 1:
raise ValueError(
"Incorrect shapes. Got shape %s logits and %s targets" % (str(logits.shape), str(targets.shape))
)
vocab_size = logits.shape[-1]
confidence = 1.0 - label_smoothing
low_confidence = (1.0 - confidence) / (vocab_size - 1)
normalizing_constant = -(
confidence * jnp.log(confidence) + (vocab_size - 1) * low_confidence * jnp.log(low_confidence + 1e-20)
)
soft_targets = common_utils.onehot(targets, vocab_size, on_value=confidence, off_value=low_confidence)
loss = -jnp.sum(soft_targets * log_softmax(logits), axis=-1)
loss = loss - normalizing_constant
if weights is not None:
loss = loss * weights
normalizing_factor = weights.sum()
else:
normalizing_factor = np.prod(targets.shape)
return loss.sum(), normalizing_factor
def training_step(optimizer, batch, dropout_rng):
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
def loss_fn(params):
targets = batch.pop("labels")
# Hide away tokens which doesn't participate in the optimization
token_mask = jnp.where(targets > 0, 1.0, 0.0)
logits = model(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss, weight_sum = cross_entropy(logits, targets, token_mask)
return loss / weight_sum
step = optimizer.state.step
lr = lr_scheduler_fn(step)
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(optimizer.target)
grad = jax.lax.pmean(grad, "batch")
optimizer = optimizer.apply_gradient(grad, learning_rate=lr)
return loss, optimizer, new_dropout_rng
def eval_step(params, batch):
"""
Calculate evaluation metrics on a batch.
"""
targets = batch.pop("labels")
# Hide away tokens which doesn't participate in the optimization
token_mask = jnp.where(targets > 0, 1.0, 0.0)
logits = model(**batch, params=params, train=False)[0]
return compute_metrics(logits, targets, token_mask)
def generate_batch_splits(samples_idx: jnp.ndarray, batch_size: int) -> jnp.ndarray:
nb_samples = len(samples_idx)
samples_to_remove = nb_samples % batch_size
if samples_to_remove != 0:
samples_idx = samples_idx[:-samples_to_remove]
sections_split = nb_samples // batch_size
batch_idx = np.split(samples_idx, sections_split)
return batch_idx
if __name__ == "__main__":
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments, WandbArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args, wandb_args = parser.parse_json_file(
json_file=os.path.abspath(sys.argv[1])
)
else:
model_args, data_args, training_args, wandb_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
level="NOTSET",
datefmt="[%X]",
)
# Log on each process the small summary:
logger = logging.getLogger(__name__)
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantees that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(extension, data_files=data_files)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
config = BertConfig.from_pretrained(model_args.model_name_or_path, cache_dir=model_args.cache_dir)
lm_class = FlaxPerformerForMaskedLM if model_args.performer else FlaxBertForMaskedLM
if model_args.reinitialize:
model = lm_class(config=BertConfig.from_pretrained(model_args.model_name_or_path))
else:
model = lm_class.from_pretrained(
model_args.model_name_or_path,
dtype=jnp.float32,
input_shape=(training_args.train_batch_size, config.max_position_embeddings),
seed=training_args.seed,
dropout_rate=0.1,
)
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
padding = "max_length" if data_args.pad_to_max_length else False
def tokenize_function(examples):
# Remove empty lines
examples = [line for line in examples if len(line) > 0 and not line.isspace()]
return tokenizer(
examples,
return_special_tokens_mask=True,
padding=padding,
truncation=True,
max_length=data_args.max_seq_length,
)
tokenized_datasets = datasets.map(
tokenize_function,
input_columns=[text_column_name],
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# Enable tensorboard only on the master node
if has_tensorboard and jax.host_id() == 0:
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir).joinpath("logs").as_posix())
# Data collator
# This one will take care of randomly masking the tokens.
data_collator = FlaxDataCollatorForLanguageModeling(tokenizer=tokenizer, mlm_probability=data_args.mlm_probability)
# Setup optimizer
optimizer = Adam(
learning_rate=training_args.learning_rate,
weight_decay=training_args.weight_decay,
beta1=training_args.adam_beta1,
beta2=training_args.adam_beta2,
).create(model.params)
# Create learning rate scheduler
lr_scheduler_fn = create_learning_rate_scheduler(
base_learning_rate=training_args.learning_rate, warmup_steps=max(training_args.warmup_steps, 1)
)
# Create parallel version of the training and evaluation steps
p_training_step = jax.pmap(training_step, "batch", donate_argnums=(0,))
p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
# Replicate the optimizer on each device
optimizer = jax_utils.replicate(optimizer)
# Store some constant
nb_epochs = int(training_args.num_train_epochs)
batch_size = int(training_args.train_batch_size)
eval_batch_size = int(training_args.eval_batch_size)
if wandb_args.wandb_user_name is not None:
import wandb
wandb.init(project=wandb_args.wandb_project_name, entity=wandb_args.wandb_user_name)
epochs = tqdm(range(nb_epochs), desc=f"Epoch ... (1/{nb_epochs})", position=0)
for epoch in epochs:
# ======================== Training ================================
# Create sampling rng
rng, training_rng, eval_rng = jax.random.split(rng, 3)
# Generate an epoch by shuffling sampling indices from the train dataset
nb_training_samples = len(tokenized_datasets["train"])
training_samples_idx = jax.random.permutation(training_rng, jnp.arange(nb_training_samples))
training_batch_idx = generate_batch_splits(training_samples_idx, batch_size)
# Gather the indexes for creating the batch and do a training step
for batch_idx in tqdm(training_batch_idx, desc="Training...", position=1):
samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
model_inputs = common_utils.shard(model_inputs.data)
loss, optimizer, dropout_rngs = p_training_step(optimizer, model_inputs, dropout_rngs)
if wandb_args.wandb_user_name is not None:
wandb.log({"Training loss": np.array(loss).mean()})
epochs.write(f"Loss: {loss}")
# ======================== Evaluating ==============================
nb_eval_samples = len(tokenized_datasets["validation"])
eval_samples_idx = jnp.arange(nb_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
model_inputs = common_utils.shard(model_inputs.data)
metrics = p_eval_step(optimizer.target, model_inputs)
eval_metrics.append(metrics)
eval_metrics_np = get_metrics(eval_metrics)
eval_metrics_np = jax.tree_map(jnp.sum, eval_metrics_np)
eval_normalizer = eval_metrics_np.pop("normalizer")
eval_summary = jax.tree_map(lambda x: x / eval_normalizer, eval_metrics_np)
# Update progress bar
epochs.desc = (
f"Epoch... ({epoch + 1}/{nb_epochs} | Loss: {eval_summary['loss']}, Acc: {eval_summary['accuracy']})"
)
if wandb_args.wandb_user_name is not None:
wandb.log({"Eval loss": np.array(eval_summary["loss"]).mean()})
# Save metrics
if has_tensorboard and jax.host_id() == 0:
for name, value in eval_summary.items():
summary_writer.scalar(name, value, epoch)
| 28,527 | 40.586006 | 119 | py |
robust-transformers | robust-transformers-main/examples/research_projects/performer/modeling_flax_performer.py | # coding=utf-8
# Copyright 2018 The Google Flax Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Callable, Dict, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from jax.random import PRNGKey
from modeling_flax_performer_utils import make_fast_softmax_attention
from transformers.file_utils import add_start_docstrings
from transformers.modeling_flax_utils import ACT2FN
from transformers.models.bert.configuration_bert import BertConfig
from transformers.models.bert.modeling_flax_bert import FlaxBertOnlyMLMHead, FlaxBertPreTrainedModel
from transformers.utils import logging
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "BertConfig"
_TOKENIZER_FOR_DOC = "BertTokenizer"
BERT_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.PreTrainedModel`. Check the superclass documentation for the generic
methods the library implements for all its model (such as downloading or saving, resizing the input embeddings,
pruning heads etc.)
This model is also a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`__
subclass. Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to
general usage and behavior.
Parameters:
config (:class:`~transformers.BertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
BERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.BertTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
class FlaxPerformerLayerNorm(nn.Module):
"""
Layer normalization (https://arxiv.org/abs/1607.06450). Operates on the last axis of the input data.
"""
epsilon: float = 1e-6
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
bias: bool = True # If True, bias (beta) is added.
scale: bool = True # If True, multiply by scale (gamma). When the next layer is linear
# (also e.g. nn.relu), this can be disabled since the scaling will be
# done by the next layer.
bias_init: jnp.ndarray = nn.initializers.zeros
scale_init: jnp.ndarray = nn.initializers.ones
@nn.compact
def __call__(self, x):
"""
Applies layer normalization on the input. It normalizes the activations of the layer for each given example in
a batch independently, rather than across a batch like Batch Normalization. i.e. applies a transformation that
maintains the mean activation within each example close to 0 and the activation standard deviation close to 1
Args:
x: the inputs
Returns:
Normalized inputs (the same shape as inputs).
"""
features = x.shape[-1]
mean = jnp.mean(x, axis=-1, keepdims=True)
mean2 = jnp.mean(jax.lax.square(x), axis=-1, keepdims=True)
var = mean2 - jax.lax.square(mean)
mul = jax.lax.rsqrt(var + self.epsilon)
if self.scale:
mul = mul * jnp.asarray(self.param("gamma", self.scale_init, (features,)), self.dtype)
y = (x - mean) * mul
if self.bias:
y = y + jnp.asarray(self.param("beta", self.bias_init, (features,)), self.dtype)
return y
class FlaxPerformerEmbedding(nn.Module):
"""
Specify a new class for doing the embedding stuff as Flax's one use 'embedding' for the parameter name and PyTorch
use 'weight'
"""
vocab_size: int
hidden_size: int
emb_init: Callable[..., np.ndarray] = nn.initializers.normal(stddev=0.1)
@nn.compact
def __call__(self, inputs):
embedding = self.param("weight", self.emb_init, (self.vocab_size, self.hidden_size))
return jnp.take(embedding, inputs, axis=0)
class FlaxPerformerEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
vocab_size: int
hidden_size: int
type_vocab_size: int
max_length: int
@nn.compact
def __call__(self, input_ids, token_type_ids, position_ids, attention_mask):
# Embed
w_emb = FlaxPerformerEmbedding(self.vocab_size, self.hidden_size, name="word_embeddings")(
jnp.atleast_2d(input_ids.astype("i4"))
)
p_emb = FlaxPerformerEmbedding(self.max_length, self.hidden_size, name="position_embeddings")(
jnp.atleast_2d(position_ids.astype("i4"))
)
t_emb = FlaxPerformerEmbedding(self.type_vocab_size, self.hidden_size, name="token_type_embeddings")(
jnp.atleast_2d(token_type_ids.astype("i4"))
)
# Sum all embeddings
summed_emb = w_emb + jnp.broadcast_to(p_emb, w_emb.shape) + t_emb
# Layer Norm
layer_norm = FlaxPerformerLayerNorm(name="layer_norm")(summed_emb)
return layer_norm
class FlaxPerformerAttention(nn.Module):
num_heads: int
head_size: int
@nn.compact
def __call__(self, hidden_state, attention_mask):
single_head_dim = self.head_size // self.num_heads
fast_softmax_attention = make_fast_softmax_attention(qkv_dim=single_head_dim)
self_att = nn.attention.SelfAttention(
num_heads=self.num_heads, qkv_features=self.head_size, name="self", attention_fn=fast_softmax_attention
)(hidden_state, attention_mask)
layer_norm = FlaxPerformerLayerNorm(name="layer_norm")(self_att + hidden_state)
return layer_norm
class FlaxPerformerIntermediate(nn.Module):
output_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, hidden_state):
# TODO: Add ACT2FN reference to change activation function
dense = nn.Dense(features=self.output_size, name="dense")(hidden_state)
return ACT2FN[self.hidden_act](dense)
class FlaxPerformerOutput(nn.Module):
@nn.compact
def __call__(self, intermediate_output, attention_output):
hidden_state = nn.Dense(attention_output.shape[-1], name="dense")(intermediate_output)
hidden_state = FlaxPerformerLayerNorm(name="layer_norm")(hidden_state + attention_output)
return hidden_state
class FlaxPerformerLayer(nn.Module):
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, hidden_state, attention_mask):
attention = FlaxPerformerAttention(self.num_heads, self.head_size, name="attention")(
hidden_state, attention_mask
)
intermediate = FlaxPerformerIntermediate(
self.intermediate_size, name="intermediate", hidden_act=self.hidden_act
)(attention)
output = FlaxPerformerOutput(name="output")(intermediate, attention)
return output
class FlaxPerformerLayerCollection(nn.Module):
"""
Stores N BertLayer(s)
"""
num_layers: int
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, inputs, attention_mask):
assert self.num_layers > 0, f"num_layers should be >= 1, got ({self.num_layers})"
# Initialize input / output
input_i = inputs
# Forward over all encoders
for i in range(self.num_layers):
layer = FlaxPerformerLayer(
self.num_heads, self.head_size, self.intermediate_size, hidden_act=self.hidden_act, name=f"{i}"
)
input_i = layer(input_i, attention_mask)
return input_i
class FlaxPerformerEncoder(nn.Module):
num_layers: int
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, hidden_state, attention_mask):
layer = FlaxPerformerLayerCollection(
self.num_layers,
self.num_heads,
self.head_size,
self.intermediate_size,
name="layer",
hidden_act=self.hidden_act,
)(hidden_state, attention_mask)
return layer
class FlaxPerformerPooler(nn.Module):
@nn.compact
def __call__(self, hidden_state):
cls_token = hidden_state[:, 0]
out = nn.Dense(hidden_state.shape[-1], name="dense")(cls_token)
return jax.lax.tanh(out)
class FlaxPerformerModule(nn.Module):
vocab_size: int
hidden_size: int
type_vocab_size: int
max_length: int
num_encoder_layers: int
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
add_pooling_layer: bool = True
@nn.compact
def __call__(self, input_ids, token_type_ids, position_ids, attention_mask):
# Embedding
embeddings = FlaxPerformerEmbeddings(
self.vocab_size, self.hidden_size, self.type_vocab_size, self.max_length, name="embeddings"
)(input_ids, token_type_ids, position_ids, attention_mask)
# N stacked encoding layers
encoder = FlaxPerformerEncoder(
self.num_encoder_layers,
self.num_heads,
self.head_size,
self.intermediate_size,
hidden_act=self.hidden_act,
name="encoder",
)(embeddings, attention_mask)
if not self.add_pooling_layer:
return encoder
pooled = FlaxPerformerPooler(name="pooler")(encoder)
return encoder, pooled
@add_start_docstrings(
"The bare Bert Model transformer outputting raw hidden-states without any specific head on top.",
BERT_START_DOCSTRING,
)
class FlaxPerformerModel(FlaxBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in `Attention is
all you need <https://arxiv.org/abs/1706.03762>`__ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
"""
model_class = FlaxPerformerModule
config_class = BertConfig
base_model_prefix = "bert"
@staticmethod
def convert_from_pytorch(pt_state: Dict, config: BertConfig) -> Dict:
jax_state = dict(pt_state)
# Need to change some parameters name to match Flax names so that we don't have to fork any layer
for key, tensor in pt_state.items():
# Key parts
key_parts = set(key.split("."))
# Every dense layer has "kernel" parameters instead of "weight"
if "dense.weight" in key:
del jax_state[key]
key = key.replace("weight", "kernel")
jax_state[key] = tensor
# SelfAttention needs also to replace "weight" by "kernel"
if {"query", "key", "value"} & key_parts:
# Flax SelfAttention decomposes the heads (num_head, size // num_heads)
if "bias" in key:
jax_state[key] = tensor.reshape((config.num_attention_heads, -1))
elif "weight":
del jax_state[key]
key = key.replace("weight", "kernel")
tensor = tensor.reshape((config.num_attention_heads, -1, config.hidden_size)).transpose((2, 0, 1))
jax_state[key] = tensor
# SelfAttention output is not a separate layer, remove one nesting
if "attention.output.dense" in key:
del jax_state[key]
key = key.replace("attention.output.dense", "attention.self.out")
jax_state[key] = tensor
# SelfAttention output is not a separate layer, remove nesting on layer norm
if "attention.output.LayerNorm" in key:
del jax_state[key]
key = key.replace("attention.output.LayerNorm", "attention.LayerNorm")
jax_state[key] = tensor
# There are some transposed parameters w.r.t their PyTorch counterpart
if "intermediate.dense.kernel" in key or "output.dense.kernel" in key:
jax_state[key] = tensor.T
# Self Attention output projection needs to be transposed
if "out.kernel" in key:
jax_state[key] = tensor.reshape((config.hidden_size, config.num_attention_heads, -1)).transpose(
1, 2, 0
)
# Pooler needs to transpose its kernel
if "pooler.dense.kernel" in key:
jax_state[key] = tensor.T
# Handle LayerNorm conversion
if "LayerNorm" in key:
del jax_state[key]
# Replace LayerNorm by layer_norm
new_key = key.replace("LayerNorm", "layer_norm")
if "weight" in key:
new_key = new_key.replace("weight", "gamma")
elif "bias" in key:
new_key = new_key.replace("bias", "beta")
jax_state[new_key] = tensor
return jax_state
def __init__(
self, config: BertConfig, input_shape: Tuple = (1, 1), seed: int = 0, dtype: jnp.dtype = jnp.float32, **kwargs
):
module = FlaxPerformerModule(
vocab_size=config.vocab_size,
hidden_size=config.hidden_size,
type_vocab_size=config.type_vocab_size,
max_length=config.max_position_embeddings,
num_encoder_layers=config.num_hidden_layers,
num_heads=config.num_attention_heads,
head_size=config.hidden_size,
intermediate_size=config.intermediate_size,
dropout_rate=config.hidden_dropout_prob,
hidden_act=config.hidden_act,
)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype)
@property
def module(self) -> nn.Module:
return self._module
def __call__(
self, input_ids, token_type_ids=None, position_ids=None, dropout_rng: PRNGKey = None, attention_mask=None
):
input_ids, attention_mask, token_type_ids, position_ids = self._check_inputs(
input_ids, attention_mask, token_type_ids, position_ids
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
rng=rngs,
)
class FlaxPerformerForMaskedLM(FlaxBertPreTrainedModel):
def __init__(
self, config: BertConfig, input_shape: Tuple = (1, 1), seed: int = 0, dtype: jnp.dtype = jnp.float32, **kwargs
):
module = FlaxPerformerForMaskedLMModule(
vocab_size=config.vocab_size,
type_vocab_size=config.type_vocab_size,
hidden_size=config.hidden_size,
intermediate_size=config.intermediate_size,
head_size=config.hidden_size,
num_heads=config.num_attention_heads,
num_encoder_layers=config.num_hidden_layers,
max_length=config.max_position_embeddings,
hidden_act=config.hidden_act,
**kwargs,
)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype)
def __call__(
self,
input_ids,
attention_mask=None,
token_type_ids=None,
position_ids=None,
params: dict = None,
train: bool = False,
dropout_rng: PRNGKey = None,
):
input_ids, attention_mask, token_type_ids, position_ids = self._check_inputs(
input_ids, attention_mask, token_type_ids, position_ids
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
not train,
rngs=rngs,
)
class FlaxPerformerForMaskedLMModule(nn.Module):
vocab_size: int
hidden_size: int
intermediate_size: int
head_size: int
num_heads: int
num_encoder_layers: int
type_vocab_size: int
max_length: int
hidden_act: str
dropout_rate: float = 0.0
dtype: jnp.dtype = jnp.float32
@nn.compact
def __call__(
self, input_ids, attention_mask=None, token_type_ids=None, position_ids=None, deterministic: bool = True
):
# Model
encoder = FlaxPerformerModule(
vocab_size=self.vocab_size,
hidden_size=self.hidden_size,
type_vocab_size=self.type_vocab_size,
max_length=self.max_length,
num_encoder_layers=self.num_encoder_layers,
num_heads=self.num_heads,
head_size=self.hidden_size,
intermediate_size=self.intermediate_size,
hidden_act=self.hidden_act,
add_pooling_layer=False,
name="bert",
)(input_ids, attention_mask, token_type_ids, position_ids)
# Compute the prediction scores
encoder = nn.Dropout(rate=self.dropout_rate)(encoder, deterministic=deterministic)
logits = FlaxBertOnlyMLMHead(
vocab_size=self.vocab_size, hidden_act=self.hidden_act, name="cls", dtype=self.dtype
)(encoder)
return (logits,)
| 21,123 | 37.129964 | 120 | py |
robust-transformers | robust-transformers-main/examples/research_projects/performer/modeling_flax_performer_utils.py | # coding=utf-8
# Copyright 2020 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
IMPORTANT:
This code was copied from
https://github.com/google-research/google-research/blob/master/performer/fast_self_attention/fast_self_attention.py on
6/11/2020. This is very new code, so it might be prone to change soon -> make sure to check the original code and
update accordingly
Core Fast Attention Module for Flax. Implementation of the approximate fast softmax and generalized attention mechanism
leveraging structured random feature maps [RFM] techniques and low rank decomposition of the attention matrix.
"""
# pylint: disable=invalid-name, missing-function-docstring, line-too-long
import abc
import functools
from collections.abc import Iterable # pylint: disable=g-importing-member
import numpy as onp
from absl import logging
import jax
import jax.numpy as jnp
from jax import lax, random
def nonnegative_softmax_kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=True, eps=0.0001
):
"""
Constructs nonnegative kernel features for fast softmax attention
Args:
data: input for which features are computes
projection_matrix: random matrix used to compute features
attention_dims_t: tuple of attention dimensions
batch_dims_t: tuple of batch dimensions
precision: precision parameter
is_query: predicate indicating whether input data corresponds to queries or
keys
normalize_data: predicate indicating whether data should be normalized,
eps: numerical stabilizer
Returns:
Random features for fast softmax attention.
"""
del attention_dims_t
if normalize_data:
# We have e^{qk^T/sqrt{d}} = e^{q_norm k_norm^T}, where
# w_norm = w * data_normalizer for w in {q,k}.
data_normalizer = 1.0 / (jnp.sqrt(jnp.sqrt(data.shape[-1])))
else:
data_normalizer = 1.0
ratio = 1.0 / jnp.sqrt(projection_matrix.shape[0])
data_mod_shape = data.shape[0 : len(batch_dims_t)] + projection_matrix.shape
data_thick_random_matrix = jnp.zeros(data_mod_shape) + projection_matrix
data_dash = lax.dot_general(
data_normalizer * data,
data_thick_random_matrix,
(((data.ndim - 1,), (data_thick_random_matrix.ndim - 1,)), (batch_dims_t, batch_dims_t)),
precision=precision,
)
diag_data = jnp.square(data)
diag_data = jnp.sum(diag_data, axis=data.ndim - 1)
diag_data = (diag_data / 2.0) * data_normalizer * data_normalizer
diag_data = jnp.expand_dims(diag_data, axis=data.ndim - 1)
if is_query:
last_dims_t = (len(data_dash.shape) - 1,)
data_dash = ratio * (
jnp.exp(data_dash - diag_data - jnp.max(data_dash, axis=last_dims_t, keepdims=True)) + eps
)
else:
data_dash = ratio * (jnp.exp(data_dash - diag_data - jnp.max(data_dash)) + eps)
return data_dash
def sincos_softmax_kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, normalize_data=True
):
"""
Constructs kernel sin-cos features for fast softmax attention
Args:
data: input for which features are computes
projection_matrix: random matrix used to compute features
attention_dims_t: tuple of attention dimensions
batch_dims_t: tuple of batch dimensions
precision: precision parameter
normalize_data: predicate indicating whether data should be normalized
Returns:
Random features for fast softmax attention.
"""
if normalize_data:
# We have: exp(qk^T/sqrt{d}) = exp(|q|^2/2sqrt{d}) * exp(|k|^2/2sqrt{d}) *
# exp(-(|q*c-k*c|^2)/2), where c = 1.0 / sqrt{sqrt{d}}.
data_normalizer = 1.0 / (jnp.sqrt(jnp.sqrt(data.shape[-1])))
else:
data_normalizer = 1.0
ratio = 1.0 / jnp.sqrt(projection_matrix.shape[0])
data_mod_shape = data.shape[0 : len(batch_dims_t)] + projection_matrix.shape
data_thick_random_matrix = jnp.zeros(data_mod_shape) + projection_matrix
data_dash = lax.dot_general(
data_normalizer * data,
data_thick_random_matrix,
(((data.ndim - 1,), (data_thick_random_matrix.ndim - 1,)), (batch_dims_t, batch_dims_t)),
precision=precision,
)
data_dash_cos = ratio * jnp.cos(data_dash)
data_dash_sin = ratio * jnp.sin(data_dash)
data_dash = jnp.concatenate((data_dash_cos, data_dash_sin), axis=-1)
# Constructing D_data and data^{'}
diag_data = jnp.square(data)
diag_data = jnp.sum(diag_data, axis=data.ndim - 1)
diag_data = (diag_data / 2.0) * data_normalizer * data_normalizer
diag_data = jnp.expand_dims(diag_data, axis=data.ndim - 1)
# Additional renormalization for numerical stability
data_renormalizer = jnp.max(diag_data, attention_dims_t, keepdims=True)
diag_data -= data_renormalizer
diag_data = jnp.exp(diag_data)
data_prime = data_dash * diag_data
return data_prime
def generalized_kernel_feature_creator(
data, projection_matrix, batch_dims_t, precision, kernel_fn, kernel_epsilon, normalize_data
):
"""
Constructs kernel features for fast generalized attention
Args:
data: input for which features are computes
projection_matrix: matrix used to compute features
batch_dims_t: tuple of batch dimensions
precision: precision parameter
kernel_fn: kernel function used
kernel_epsilon: additive positive term added to every feature for numerical
stability
normalize_data: predicate indicating whether data should be normalized
Returns:
Random features for fast generalized attention.
"""
if normalize_data:
data_normalizer = 1.0 / (jnp.sqrt(jnp.sqrt(data.shape[-1])))
else:
data_normalizer = 1.0
if projection_matrix is None:
return kernel_fn(data_normalizer * data) + kernel_epsilon
else:
data_mod_shape = data.shape[0 : len(batch_dims_t)] + projection_matrix.shape
data_thick_random_matrix = jnp.zeros(data_mod_shape) + projection_matrix
data_dash = lax.dot_general(
data_normalizer * data,
data_thick_random_matrix,
(((data.ndim - 1,), (data_thick_random_matrix.ndim - 1,)), (batch_dims_t, batch_dims_t)),
precision=precision,
)
data_prime = kernel_fn(data_dash) + kernel_epsilon
return data_prime
def make_fast_softmax_attention(
qkv_dim,
renormalize_attention=True,
numerical_stabilizer=0.000001,
nb_features=256,
ortho_features=True,
ortho_scaling=0.0,
redraw_features=True,
unidirectional=False,
nonnegative_features=True,
lax_scan_unroll=1,
):
"""Construct a fast softmax attention method."""
logging.info(
"Fast softmax attention: %s features and orthogonal=%s, renormalize=%s",
nb_features,
ortho_features,
renormalize_attention,
)
if ortho_features:
matrix_creator = functools.partial(GaussianOrthogonalRandomMatrix, nb_features, qkv_dim, scaling=ortho_scaling)
else:
matrix_creator = functools.partial(GaussianUnstructuredRandomMatrix, nb_features, qkv_dim)
if nonnegative_features:
def kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=True
):
return nonnegative_softmax_kernel_feature_creator(
data,
projection_matrix,
attention_dims_t,
batch_dims_t,
precision,
is_query,
normalize_data,
numerical_stabilizer,
)
else:
def kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=True
):
del is_query
return sincos_softmax_kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, normalize_data
)
attention_fn = FastAttentionviaLowRankDecomposition(
matrix_creator,
kernel_feature_creator,
renormalize_attention=renormalize_attention,
numerical_stabilizer=numerical_stabilizer,
redraw_features=redraw_features,
unidirectional=unidirectional,
lax_scan_unroll=lax_scan_unroll,
).dot_product_attention
return attention_fn
def make_fast_generalized_attention(
qkv_dim,
renormalize_attention=True,
numerical_stabilizer=0.0,
nb_features=256,
features_type="deterministic",
kernel_fn=jax.nn.relu,
kernel_epsilon=0.001,
redraw_features=False,
unidirectional=False,
lax_scan_unroll=1,
):
"""Construct a fast generalized attention menthod."""
logging.info("Fast generalized attention.: %s features and renormalize=%s", nb_features, renormalize_attention)
if features_type == "ortho":
matrix_creator = functools.partial(GaussianOrthogonalRandomMatrix, nb_features, qkv_dim, scaling=False)
elif features_type == "iid":
matrix_creator = functools.partial(GaussianUnstructuredRandomMatrix, nb_features, qkv_dim)
elif features_type == "deterministic":
matrix_creator = None
else:
raise ValueError("Unknown feature value type")
def kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=False
):
del attention_dims_t
del is_query
return generalized_kernel_feature_creator(
data, projection_matrix, batch_dims_t, precision, kernel_fn, kernel_epsilon, normalize_data
)
attention_fn = FastAttentionviaLowRankDecomposition(
matrix_creator,
kernel_feature_creator,
renormalize_attention=renormalize_attention,
numerical_stabilizer=numerical_stabilizer,
redraw_features=redraw_features,
unidirectional=unidirectional,
lax_scan_unroll=lax_scan_unroll,
).dot_product_attention
return attention_fn
class RandomMatrix(object):
r"""
Abstract class providing a method for constructing 2D random arrays. Class is responsible for constructing 2D
random arrays.
"""
__metaclass__ = abc.ABCMeta
@abc.abstractmethod
def get_2d_array(self):
raise NotImplementedError("Abstract method")
class GaussianUnstructuredRandomMatrix(RandomMatrix):
def __init__(self, nb_rows, nb_columns, key):
self.nb_rows = nb_rows
self.nb_columns = nb_columns
self.key = key
def get_2d_array(self):
return random.normal(self.key, (self.nb_rows, self.nb_columns))
class GaussianOrthogonalRandomMatrix(RandomMatrix):
r"""
Class providing a method to create Gaussian orthogonal matrix. Class is responsible for constructing 2D Gaussian
orthogonal arrays.
"""
def __init__(self, nb_rows, nb_columns, key, scaling=0):
self.nb_rows = nb_rows
self.nb_columns = nb_columns
self.key = key
self.scaling = scaling
def get_2d_array(self):
nb_full_blocks = int(self.nb_rows / self.nb_columns)
block_list = []
rng = self.key
for _ in range(nb_full_blocks):
rng, rng_input = jax.random.split(rng)
unstructured_block = random.normal(rng_input, (self.nb_columns, self.nb_columns))
q, _ = jnp.linalg.qr(unstructured_block)
q = jnp.transpose(q)
block_list.append(q)
remaining_rows = self.nb_rows - nb_full_blocks * self.nb_columns
if remaining_rows > 0:
rng, rng_input = jax.random.split(rng)
unstructured_block = random.normal(rng_input, (self.nb_columns, self.nb_columns))
q, _ = jnp.linalg.qr(unstructured_block)
q = jnp.transpose(q)
block_list.append(q[0:remaining_rows])
final_matrix = jnp.vstack(block_list)
if self.scaling == 0:
multiplier = jnp.linalg.norm(random.normal(self.key, (self.nb_rows, self.nb_columns)), axis=1)
elif self.scaling == 1:
multiplier = jnp.sqrt(float(self.nb_columns)) * jnp.ones((self.nb_rows))
else:
raise ValueError("Scaling must be one of {0, 1}. Was %s" % self._scaling)
return jnp.matmul(jnp.diag(multiplier), final_matrix)
class FastAttention(object):
r"""
Abstract class providing a method for fast attention. Class is responsible for providing a method
<dot_product_attention> for fast approximate attention.
"""
__metaclass__ = abc.ABCMeta
@abc.abstractmethod
def dot_product_attention(
self,
query,
key,
value,
dtype=jnp.float32,
bias=None,
axis=None,
broadcast_dropout=True,
dropout_rng=None,
dropout_rate=0.0,
deterministic=False,
precision=None,
):
"""
Computes dot-product attention given query, key, and value. This is the core function for applying fast
approximate dot-product attention. It calculates the attention weights given query and key and combines the
values using the attention weights. This function supports multi-dimensional inputs
Args:
query: queries for calculating attention with shape of [batch_size, dim1,
dim2, ..., dimN, num_heads, mem_channels].
key: keys for calculating attention with shape of [batch_size, dim1, dim2,
..., dimN, num_heads, mem_channels].
value: values to be used in attention with shape of [batch_size, dim1,
dim2,..., dimN, num_heads, value_channels].
dtype: the dtype of the computation (default: float32)
bias: bias for the attention weights. This can be used for incorporating
autoregressive mask, padding mask, proximity bias.
axis: axises over which the attention is applied.
broadcast_dropout: bool: use a broadcasted dropout along batch dims.
dropout_rng: JAX PRNGKey: to be used for dropout.
dropout_rate: dropout rate.
deterministic: bool, deterministic or not (to apply dropout).
precision: numerical precision of the computation see `jax.lax.Precision`
for details
Returns:
Output of shape [bs, dim1, dim2, ..., dimN,, num_heads, value_channels].
"""
raise NotImplementedError("Abstract method")
def _numerator(z_slice_shape, precision, unroll=1):
def fwd(qs, ks, vs):
def body(p, qkv):
(q, k, v) = qkv
p += jnp.einsum("...m,...d->...md", k, v, precision=precision)
X_slice = jnp.einsum("...m,...md->...d", q, p, precision=precision)
return p, X_slice
init_value = jnp.zeros(z_slice_shape)
p, W = lax.scan(body, init_value, (qs, ks, vs), unroll=unroll)
return W, (p, qs, ks, vs)
def bwd(pqkv, W_ct):
def body(carry, qkv_xct):
p, p_ct = carry
q, k, v, x_ct = qkv_xct
q_ct = jnp.einsum("...d,...md->...m", x_ct, p, precision=precision)
p_ct += jnp.einsum("...d,...m->...md", x_ct, q, precision=precision)
k_ct = jnp.einsum("...md,...d->...m", p_ct, v, precision=precision)
v_ct = jnp.einsum("...md,...m->...d", p_ct, k, precision=precision)
p -= jnp.einsum("...m,...d->...md", k, v, precision=precision)
return (p, p_ct), (q_ct, k_ct, v_ct)
p, qs, ks, vs = pqkv
_, (qs_ct, ks_ct, vs_ct) = lax.scan(
body, (p, jnp.zeros_like(p)), (qs, ks, vs, W_ct), reverse=True, unroll=unroll
)
return qs_ct, ks_ct, vs_ct
@jax.custom_vjp
def _numerator_impl(qs, ks, vs):
W, _ = fwd(qs, ks, vs)
return W
_numerator_impl.defvjp(fwd, bwd)
return _numerator_impl
def _denominator(t_slice_shape, precision, unroll=1):
def fwd(qs, ks):
def body(p, qk):
q, k = qk
p += k
x = jnp.einsum("...m,...m->...", q, p, precision=precision)
return p, x
p = jnp.zeros(t_slice_shape)
p, R = lax.scan(body, p, (qs, ks), unroll=unroll)
return R, (qs, ks, p)
def bwd(qkp, R_ct):
def body(carry, qkx):
p, p_ct = carry
q, k, x_ct = qkx
q_ct = jnp.einsum("...,...m->...m", x_ct, p, precision=precision)
p_ct += jnp.einsum("...,...m->...m", x_ct, q, precision=precision)
k_ct = p_ct
p -= k
return (p, p_ct), (q_ct, k_ct)
qs, ks, p = qkp
_, (qs_ct, ks_ct) = lax.scan(body, (p, jnp.zeros_like(p)), (qs, ks, R_ct), reverse=True, unroll=unroll)
return (qs_ct, ks_ct)
@jax.custom_vjp
def _denominator_impl(qs, ks):
R, _ = fwd(qs, ks)
return R
_denominator_impl.defvjp(fwd, bwd)
return _denominator_impl
class FastAttentionviaLowRankDecomposition(FastAttention):
r"""
Class providing a method for fast attention via low rank decomposition. Class is responsible for providing a method
<dot_product_attention> for fast dot-product attention with the use of low rank decomposition (e.g. with random
feature maps).
"""
def __init__(
self,
matrix_creator,
kernel_feature_creator,
renormalize_attention,
numerical_stabilizer,
redraw_features,
unidirectional,
lax_scan_unroll=1,
): # For optimal GPU performance, set to 16.
rng = random.PRNGKey(0)
self.matrix_creator = matrix_creator
self.projection_matrix = self.draw_weights(rng)
self.kernel_feature_creator = kernel_feature_creator
self.renormalize_attention = renormalize_attention
self.numerical_stabilizer = numerical_stabilizer
self.redraw_features = redraw_features
self.unidirectional = unidirectional
self.lax_scan_unroll = lax_scan_unroll
def draw_weights(self, key):
if self.matrix_creator is None:
return None
matrixrng, _ = random.split(key)
projection_matrix = self.matrix_creator(key=matrixrng).get_2d_array()
return projection_matrix
def dot_product_attention(
self,
query,
key,
value,
dtype=jnp.float32,
bias=None,
axis=None,
broadcast_dropout=True,
dropout_rng=None,
dropout_rate=0.0,
deterministic=False,
precision=None,
):
assert key.shape[:-1] == value.shape[:-1]
assert query.shape[0:1] == key.shape[0:1] and query.shape[-1] == key.shape[-1]
if axis is None:
axis = tuple(range(1, key.ndim - 2))
if not isinstance(axis, Iterable):
axis = (axis,)
assert key.ndim == query.ndim
assert key.ndim == value.ndim
for ax in axis:
if not (query.ndim >= 3 and 1 <= ax < query.ndim - 2):
raise ValueError("Attention axis must be between the batch " "axis and the last-two axes.")
n = key.ndim
# Constructing projection tensor.
if self.redraw_features:
# TODO(kchoro): Get rid of the constant below.
query_seed = lax.convert_element_type(jnp.ceil(jnp.sum(query) * 10000000.0), jnp.int32)
rng = random.PRNGKey(query_seed)
self.projection_matrix = self.draw_weights(rng)
# batch_dims is <bs, <non-attention dims>, num_heads>
batch_dims = tuple(onp.delete(range(n), axis + (n - 1,)))
# q & k -> (bs, <non-attention dims>, num_heads, <attention dims>, channels)
qk_perm = batch_dims + axis + (n - 1,)
k_extra_perm = axis + batch_dims + (n - 1,)
key_extra = key.transpose(k_extra_perm)
key = key.transpose(qk_perm)
query = query.transpose(qk_perm)
# v -> (bs, <non-attention dims>, num_heads, <attention dims>, channels)
v_perm = batch_dims + axis + (n - 1,)
value = value.transpose(v_perm)
batch_dims_t = tuple(range(len(batch_dims)))
attention_dims_t = tuple(range(len(batch_dims), len(batch_dims) + len(axis)))
# Constructing tensors Q^{'} and K^{'}.
query_prime = self.kernel_feature_creator(
query, self.projection_matrix, attention_dims_t, batch_dims_t, precision, True
)
key_prime = self.kernel_feature_creator(
key, self.projection_matrix, attention_dims_t, batch_dims_t, precision, False
)
if self.unidirectional:
index = attention_dims_t[0]
z_slice_shape = key_prime.shape[0 : len(batch_dims_t)] + (key_prime.shape[-1],) + (value.shape[-1],)
numerator_fn = _numerator(z_slice_shape, precision, self.lax_scan_unroll)
W = numerator_fn(
jnp.moveaxis(query_prime, index, 0), jnp.moveaxis(key_prime, index, 0), jnp.moveaxis(value, index, 0)
)
# Constructing W = (Q^{'}(K^{'})^{T})_{masked}V
W = jnp.moveaxis(W, 0, index)
if not self.renormalize_attention:
# Unidirectional, not-normalized attention.
perm_inv = _invert_perm(qk_perm)
result = W.transpose(perm_inv)
return result
else:
# Unidirectional, normalized attention.
thick_all_ones = jnp.zeros(key.shape[0:-1]) + jnp.ones(key_extra.shape[0 : len(axis)])
index = attention_dims_t[0]
t_slice_shape = key_prime.shape[0 : len(batch_dims_t)] + (key_prime.shape[-1],)
denominator_fn = _denominator(t_slice_shape, precision, self.lax_scan_unroll)
R = denominator_fn(jnp.moveaxis(query_prime, index, 0), jnp.moveaxis(key_prime, index, 0))
R = jnp.moveaxis(R, 0, index)
else:
contract_query = tuple(range(len(batch_dims) + len(axis), len(batch_dims) + len(axis) + 1))
contract_z = tuple(range(len(batch_dims), len(batch_dims) + 1))
# Constructing Z = (K^{'})^{T}V
# Z (bs, <non-attention dims>, num_heads, channels_m, channels_v)
Z = lax.dot_general(
key_prime,
value,
((attention_dims_t, attention_dims_t), (batch_dims_t, batch_dims_t)),
precision=precision,
)
# Constructing W = Q^{'}Z = Q^{'}(K^{'})^{T}V
# q (bs, <non-attention dims>, num_heads, <attention dims>, channels_m)
# Z (bs, <non-attention dims>, num_heads, channels_m, channels_v)
# W (bs, <non-attention dims>, num_heads, <attention dims>, channels_v)
W = lax.dot_general(
query_prime, Z, ((contract_query, contract_z), (batch_dims_t, batch_dims_t)), precision=precision
)
if not self.renormalize_attention:
# Bidirectional, not-normalized attention.
perm_inv = _invert_perm(qk_perm)
result = W.transpose(perm_inv)
return result
else:
# Bidirectional, normalized attention.
thick_all_ones = jnp.zeros(key.shape[0:-1]) + jnp.ones(key_extra.shape[0 : len(axis)])
contract_key = tuple(range(len(batch_dims), len(batch_dims) + len(axis)))
contract_thick_all_ones = tuple(range(thick_all_ones.ndim - len(axis), thick_all_ones.ndim))
# Construct T = (K^{'})^{T} 1_L
# k (bs, <non-attention dims>, num_heads, <attention dims>, channels)
T = lax.dot_general(
key_prime,
thick_all_ones,
((contract_key, contract_thick_all_ones), (batch_dims_t, batch_dims_t)),
precision=precision,
)
# Construct partition function: R = Q^{'} T = Q^{'}(K^{'})^{T} 1_L
# q_p (bs, <non-attention dims>, num_heads, <attention dims>, channs_m)
# T (bs, <non-attention dims>, num_heads, channels_m)
R = lax.dot_general(
query_prime,
T,
(((query_prime.ndim - 1,), (T.ndim - 1,)), (batch_dims_t, range(0, len(T.shape) - 1))),
precision=precision,
)
R = R + 2 * self.numerical_stabilizer * (jnp.abs(R) <= self.numerical_stabilizer)
R = jnp.reciprocal(R)
R = jnp.expand_dims(R, len(R.shape))
# W (bs, <non-attention dims>, num_heads, <attention dims>, channels_v)
# R (bs, <non-attention dims>, num_heads, <attention dims>, extra_channel)
result = W * R
# back to (bs, dim1, dim2, ..., dimN, num_heads, channels)
perm_inv = _invert_perm(qk_perm)
result = result.transpose(perm_inv)
return result
def _invert_perm(perm):
perm_inv = [0] * len(perm)
for i, j in enumerate(perm):
perm_inv[j] = i
return tuple(perm_inv)
| 25,683 | 37.856278 | 119 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/use_own_knowledge_dataset.py | import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import torch
from datasets import Features, Sequence, Value, load_dataset
import faiss
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast, HfArgumentParser
logger = logging.getLogger(__name__)
torch.set_grad_enabled(False)
device = "cuda" if torch.cuda.is_available() else "cpu"
def split_text(text: str, n=100, character=" ") -> List[str]:
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents: dict) -> dict:
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed(documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
def main(
rag_example_args: "RagExampleArguments",
processing_args: "ProcessingArguments",
index_hnsw_args: "IndexHnswArguments",
):
######################################
logger.info("Step 1 - Create the dataset")
######################################
# The dataset needed for RAG must have three columns:
# - title (string): title of the document
# - text (string): text of a passage of the document
# - embeddings (array of dimension d): DPR representation of the passage
# Let's say you have documents in tab-separated csv files with columns "title" and "text"
assert os.path.isfile(rag_example_args.csv_path), "Please provide a valid path to a csv file"
# You can load a Dataset object this way
dataset = load_dataset(
"csv", data_files=[rag_example_args.csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
# More info about loading csv files in the documentation: https://huggingface.co/docs/datasets/loading_datasets.html?highlight=csv#csv-files
# Then split the documents into passages of 100 words
dataset = dataset.map(split_documents, batched=True, num_proc=processing_args.num_proc)
# And compute the embeddings
ctx_encoder = DPRContextEncoder.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name).to(device=device)
ctx_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name)
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = dataset.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=ctx_tokenizer),
batched=True,
batch_size=processing_args.batch_size,
features=new_features,
)
# And finally save your dataset
passages_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset")
dataset.save_to_disk(passages_path)
# from datasets import load_from_disk
# dataset = load_from_disk(passages_path) # to reload the dataset
######################################
logger.info("Step 2 - Index the dataset")
######################################
# Let's use the Faiss implementation of HNSW for fast approximate nearest neighbor search
index = faiss.IndexHNSWFlat(index_hnsw_args.d, index_hnsw_args.m, faiss.METRIC_INNER_PRODUCT)
dataset.add_faiss_index("embeddings", custom_index=index)
# And save the index
index_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset_hnsw_index.faiss")
dataset.get_index("embeddings").save(index_path)
# dataset.load_faiss_index("embeddings", index_path) # to reload the index
@dataclass
class RagExampleArguments:
csv_path: str = field(
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset.csv"),
metadata={"help": "Path to a tab-separated csv file with columns 'title' and 'text'"},
)
question: Optional[str] = field(
default=None,
metadata={"help": "Question that is passed as input to RAG. Default is 'What does Moses' rod turn into ?'."},
)
rag_model_name: str = field(
default="facebook/rag-sequence-nq",
metadata={"help": "The RAG model to use. Either 'facebook/rag-sequence-nq' or 'facebook/rag-token-nq'"},
)
dpr_ctx_encoder_model_name: str = field(
default="facebook/dpr-ctx_encoder-multiset-base",
metadata={
"help": "The DPR context encoder model to use. Either 'facebook/dpr-ctx_encoder-single-nq-base' or 'facebook/dpr-ctx_encoder-multiset-base'"
},
)
output_dir: Optional[str] = field(
default=str(Path(__file__).parent / "test_run" / "dummy-kb"),
metadata={"help": "Path to a directory where the dataset passages and the index will be saved"},
)
@dataclass
class ProcessingArguments:
num_proc: Optional[int] = field(
default=None,
metadata={
"help": "The number of processes to use to split the documents into passages. Default is single process."
},
)
batch_size: int = field(
default=16,
metadata={
"help": "The batch size to use when computing the passages embeddings using the DPR context encoder."
},
)
@dataclass
class IndexHnswArguments:
d: int = field(
default=768,
metadata={"help": "The dimension of the embeddings to pass to the HNSW Faiss index."},
)
m: int = field(
default=128,
metadata={
"help": "The number of bi-directional links created for every new element during the HNSW index construction."
},
)
if __name__ == "__main__":
logging.basicConfig(level=logging.WARNING)
logger.setLevel(logging.INFO)
parser = HfArgumentParser((RagExampleArguments, ProcessingArguments, IndexHnswArguments))
rag_example_args, processing_args, index_hnsw_args = parser.parse_args_into_dataclasses()
with TemporaryDirectory() as tmp_dir:
rag_example_args.output_dir = rag_example_args.output_dir or tmp_dir
main(rag_example_args, processing_args, index_hnsw_args)
| 6,909 | 39.174419 | 152 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/utils_rag.py | import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transformers import BartTokenizer, RagTokenizer, T5Tokenizer
def encode_line(tokenizer, line, max_length, padding_side, pad_to_max_length=True, return_tensors="pt"):
extra_kw = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) and not line.startswith(" ") else {}
tokenizer.padding_side = padding_side
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
add_special_tokens=True,
**extra_kw,
)
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class Seq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
src_lang=None,
tgt_lang=None,
prefix="",
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.src_lens = self.get_char_lens(self.src_file)
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.src_lang = src_lang
self.tgt_lang = tgt_lang
def __len__(self):
return len(self.src_lens)
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
# Need to add eos token manually for T5
if isinstance(self.tokenizer, T5Tokenizer):
source_line += self.tokenizer.eos_token
tgt_line += self.tokenizer.eos_token
# Pad source and target to the right
source_tokenizer = (
self.tokenizer.question_encoder if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
)
target_tokenizer = self.tokenizer.generator if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
source_inputs = encode_line(source_tokenizer, source_line, self.max_source_length, "right")
target_inputs = encode_line(target_tokenizer, tgt_line, self.max_target_length, "right")
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"decoder_input_ids": target_ids,
}
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["decoder_input_ids"] for x in batch])
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
y = trim_batch(target_ids, tgt_pad_token_id)
source_ids, source_mask = trim_batch(input_ids, src_pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"decoder_input_ids": y,
}
return batch
logger = getLogger(__name__)
def flatten_list(summary_ids: List[List]):
return [x for x in itertools.chain.from_iterable(summary_ids)]
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def normalize_answer(s):
"""Lower text and remove punctuation, articles and extra whitespace."""
def remove_articles(text):
return re.sub(r"\b(a|an|the)\b", " ", text)
def white_space_fix(text):
return " ".join(text.split())
def remove_punc(text):
exclude = set(string.punctuation)
return "".join(ch for ch in text if ch not in exclude)
def lower(text):
return text.lower()
return white_space_fix(remove_articles(remove_punc(lower(s))))
def f1_score(prediction, ground_truth):
prediction_tokens = normalize_answer(prediction).split()
ground_truth_tokens = normalize_answer(ground_truth).split()
common = Counter(prediction_tokens) & Counter(ground_truth_tokens)
num_same = sum(common.values())
if num_same == 0:
return 0
precision = 1.0 * num_same / len(prediction_tokens)
recall = 1.0 * num_same / len(ground_truth_tokens)
f1 = (2 * precision * recall) / (precision + recall)
return f1
def exact_match_score(prediction, ground_truth):
return normalize_answer(prediction) == normalize_answer(ground_truth)
def calculate_exact_match(output_lns: List[str], reference_lns: List[str]) -> Dict:
assert len(output_lns) == len(reference_lns)
em = 0
for hypo, pred in zip(output_lns, reference_lns):
em += exact_match_score(hypo, pred)
if len(output_lns) > 0:
em /= len(output_lns)
return {"em": em}
def is_rag_model(model_prefix):
return model_prefix.startswith("rag")
def set_extra_model_params(extra_params, hparams, config):
equivalent_param = {p: p for p in extra_params}
# T5 models don't have `dropout` param, they have `dropout_rate` instead
equivalent_param["dropout"] = "dropout_rate"
for p in extra_params:
if getattr(hparams, p, None):
if not hasattr(config, p) and not hasattr(config, equivalent_param[p]):
logger.info("config doesn't have a `{}` attribute".format(p))
delattr(hparams, p)
continue
set_p = p if hasattr(config, p) else equivalent_param[p]
setattr(config, set_p, getattr(hparams, p))
delattr(hparams, p)
return hparams, config
| 8,114 | 32.122449 | 118 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/finetune_rag.py | """Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import copy
import json
import logging
import multiprocessing
import os
import random
import shutil
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
import torch.distributed as dist
from datasets import concatenate_datasets, load_from_disk
from torch.utils.data import DataLoader
from transformers import (
AutoConfig,
AutoTokenizer,
BartForConditionalGeneration,
BatchEncoding,
DPRConfig,
DPRContextEncoder,
DPRContextEncoderTokenizerFast,
RagConfig,
RagSequenceForGeneration,
RagTokenForGeneration,
RagTokenizer,
T5ForConditionalGeneration,
)
from transformers import logging as transformers_logging
from transformers.integrations import is_ray_available
if is_ray_available():
import ray
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever
from glob import glob
from callbacks_rag import Seq2SeqLoggingCallback, get_checkpoint_callback, get_early_stopping_callback
from kb_encode_utils import add_index, embed_update
from lightning_base import BaseTransformer, add_generic_args, generic_train
from pynvml import nvmlDeviceGetCount, nvmlDeviceGetHandleByIndex, nvmlDeviceGetMemoryInfo, nvmlInit
from utils_rag import (
Seq2SeqDataset,
calculate_exact_match,
get_git_info,
is_rag_model,
lmap,
pickle_save,
save_git_info,
save_json,
set_extra_model_params,
)
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
transformers_logging.set_verbosity_info()
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
isEmUpdateBusy = False
isAddIndexBusy = False
processes = []
threadHandle_index = None
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
class GenerativeQAModule(BaseTransformer):
mode = "generative_qa"
loss_names = ["loss"]
metric_names = ["em"]
val_metric = "em"
def __init__(self, hparams, **kwargs):
# when loading from a pytorch lightning checkpoint, hparams are passed as dict
if isinstance(hparams, dict):
hparams = AttrDict(hparams)
if hparams.model_type == "rag_sequence":
self.model_class = RagSequenceForGeneration
elif hparams.model_type == "rag_token":
self.model_class = RagTokenForGeneration
elif hparams.model_type == "bart":
self.model_class = BartForConditionalGeneration
else:
self.model_class = T5ForConditionalGeneration
self.is_rag_model = is_rag_model(hparams.model_type)
config_class = RagConfig if self.is_rag_model else AutoConfig
config = config_class.from_pretrained(hparams.model_name_or_path)
# set retriever parameters
config.index_name = hparams.index_name or config.index_name
config.passages_path = hparams.passages_path or config.passages_path
config.index_path = hparams.index_path or config.index_path
config.use_dummy_dataset = hparams.use_dummy_dataset
# set extra_model_params for generator configs and load_model
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "attention_dropout", "dropout")
if self.is_rag_model:
if hparams.prefix is not None:
config.generator.prefix = hparams.prefix
config.label_smoothing = hparams.label_smoothing
hparams, config.generator = set_extra_model_params(extra_model_params, hparams, config.generator)
if hparams.distributed_retriever == "ray":
# The Ray retriever needs the handles to the retriever actors.
retriever = RagRayDistributedRetriever.from_pretrained(
hparams.model_name_or_path, hparams.actor_handles, config=config
)
if hparams.end2end:
ctx_encoder_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(
"facebook/dpr-ctx_encoder-multiset-base"
)
retriever.set_ctx_encoder_tokenizer(ctx_encoder_tokenizer)
else:
logger.info("please use RAY as the distributed retrieval method")
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config, retriever=retriever)
if hparams.end2end:
ctx_encoder = DPRContextEncoder.from_pretrained(hparams.context_encoder_name)
model.set_context_encoder_for_training(ctx_encoder)
prefix = config.question_encoder.prefix
else:
if hparams.prefix is not None:
config.prefix = hparams.prefix
hparams, config = set_extra_model_params(extra_model_params, hparams, config)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config)
prefix = config.prefix
tokenizer = (
RagTokenizer.from_pretrained(hparams.model_name_or_path)
if self.is_rag_model
else AutoTokenizer.from_pretrained(hparams.model_name_or_path)
)
self.config_dpr = DPRConfig.from_pretrained(hparams.context_encoder_name)
self.custom_config = hparams
self.context_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(hparams.context_encoder_name)
super().__init__(hparams, config=config, tokenizer=tokenizer, model=model)
save_git_info(self.hparams.output_dir)
self.output_dir = Path(self.hparams.output_dir)
self.dpr_ctx_check_dir = str(Path(self.hparams.output_dir)) + "/dpr_ctx_checkpoint"
self.metrics_save_path = Path(self.output_dir) / "metrics.json"
self.hparams_save_path = Path(self.output_dir) / "hparams.pkl"
pickle_save(self.hparams, self.hparams_save_path)
self.step_count = 0
self.metrics = defaultdict(list)
self.dataset_kwargs: dict = dict(
data_dir=self.hparams.data_dir,
max_source_length=self.hparams.max_source_length,
prefix=prefix or "",
)
n_observations_per_split = {
"train": self.hparams.n_train,
"val": self.hparams.n_val,
"test": self.hparams.n_test,
}
self.n_obs = {k: v if v >= 0 else None for k, v in n_observations_per_split.items()}
self.target_lens = {
"train": self.hparams.max_target_length,
"val": self.hparams.val_max_target_length,
"test": self.hparams.test_max_target_length,
}
assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
self.hparams.git_sha = get_git_info()["repo_sha"]
self.num_workers = hparams.num_workers
self.distributed_port = self.hparams.distributed_port
# For single GPU training, init_ddp_connection is not called.
# So we need to initialize the retrievers here.
if hparams.gpus <= 1:
if hparams.distributed_retriever == "ray":
self.model.retriever.init_retrieval()
else:
logger.info("please use RAY as the distributed retrieval method")
self.distributed_retriever = hparams.distributed_retriever
def forward(self, input_ids, **kwargs):
return self.model(input_ids, **kwargs)
def ids_to_clean_text(self, generated_ids: List[int]):
gen_text = self.tokenizer.batch_decode(
generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
return lmap(str.strip, gen_text)
def _step(self, batch: dict) -> Tuple:
source_ids, source_mask, target_ids = batch["input_ids"], batch["attention_mask"], batch["decoder_input_ids"]
rag_kwargs = {}
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(target_ids)
lm_labels = target_ids
elif isinstance(self.model, BartForConditionalGeneration):
decoder_input_ids = target_ids[:, :-1].contiguous()
lm_labels = target_ids[:, 1:].clone()
else:
assert self.is_rag_model
generator = self.model.rag.generator
if isinstance(generator, T5ForConditionalGeneration):
decoder_start_token_id = generator.config.decoder_start_token_id
decoder_input_ids = (
torch.cat(
[torch.tensor([[decoder_start_token_id]] * target_ids.shape[0]).to(target_ids), target_ids],
dim=1,
)
if target_ids.shape[0] < self.target_lens["train"]
else generator._shift_right(target_ids)
)
elif isinstance(generator, BartForConditionalGeneration):
decoder_input_ids = target_ids
lm_labels = decoder_input_ids
rag_kwargs["reduce_loss"] = True
assert decoder_input_ids is not None
outputs = self(
source_ids,
attention_mask=source_mask,
decoder_input_ids=decoder_input_ids,
use_cache=False,
labels=lm_labels,
**rag_kwargs,
)
loss = outputs["loss"]
return (loss,)
@property
def pad(self) -> int:
raise NotImplementedError("pad not implemented")
def training_step(self, batch, batch_idx) -> Dict:
global isEmUpdateBusy # use to check whether the entire embedding update process is finished or not
global isAddIndexBusy # use to check whether the entire indexing process is finished or not
global processes # use to keep threads embedding update processes
global threadHandle_index # use to keep thread in embedding indexing processes
if (self.trainer.global_rank == 0) and (self.custom_config.end2end):
if (not batch_idx == 0) and (batch_idx % self.custom_config.indexing_freq == 0):
free_gpu_list = []
nvmlInit()
deviceCount = nvmlDeviceGetCount()
my_list = json.loads(self.custom_config.gpu_order)
for i in range(deviceCount):
handle = nvmlDeviceGetHandleByIndex(i)
info = nvmlDeviceGetMemoryInfo(handle)
if info.used / 1e6 < 15:
position = my_list.index(i)
free_gpu_list.append("cuda:" + str(position))
if len(free_gpu_list) >= self.custom_config.index_gpus:
has_free_gpus = True
else:
has_free_gpus = False
if (not isEmUpdateBusy) and has_free_gpus:
model_copy = type(self.model.rag.ctx_encoder)(
self.config_dpr
) # get a new instance #this will be load in the CPU
model_copy.load_state_dict(self.model.rag.ctx_encoder.state_dict()) # copy weights
processes = []
if len(free_gpu_list) > self.custom_config.index_gpus:
cuda_devices = random.sample(free_gpu_list, self.custom_config.index_gpus)
else:
cuda_devices = free_gpu_list
num_processes = len(cuda_devices)
for rank in range(num_processes):
logger.info("Iniitializing embedding calculation process rank{}".format(rank))
device = cuda_devices[rank]
p = multiprocessing.Process(
target=embed_update,
args=(
copy.deepcopy(model_copy),
num_processes,
device,
rank,
self.custom_config.shard_dir,
self.custom_config.csv_path,
),
)
processes.append(p)
for p in processes:
p.start()
isEmUpdateBusy = True
if isEmUpdateBusy and (not isAddIndexBusy):
index_process_list = [processes[k].is_alive() for k in range(self.custom_config.index_gpus)]
if (
sum(index_process_list) == 0
): # If entire list is false, we can say all embedding calculation process has finished
logger.info("Start adding the index")
threadHandle_index = multiprocessing.Process(
target=add_index,
args=(
self.custom_config.shard_dir,
self.config.index_path,
),
)
threadHandle_index.start()
isAddIndexBusy = True
# check when index building has started
if isAddIndexBusy:
# check still the index_building process is happening
if not threadHandle_index.is_alive():
logger.info("Merging the dataset shards")
saved_dataset_shards = []
for address in glob(str(self.custom_config.shard_dir) + "/*/"):
saved_dataset_shards.append(load_from_disk(address))
concat = concatenate_datasets(saved_dataset_shards)
concat.save_to_disk(self.config.passages_path) # here we update the main passage file on the disk
logger.info("done updating the dataset")
# if you load the index from the disk make sure to update the index file here, otherwise it is ok to update the index file from the worker.
# logger.info("then updating the index")
# shutil.copy(self.custom_config.temp_index, self.config.idex_path)
logger.info("Loading new passages and iniitalzing new index")
self.trainer.model.module.module.model.rag.retriever.re_load()
self.trainer.model.module.module.model.rag.retriever.init_retrieval()
isEmUpdateBusy = False
isAddIndexBusy = False
self.trainer.accelerator_connector.accelerator.barrier(
"barrier"
) # waint untill the index and kb get re-initialized.
loss_tensors = self._step(batch)
logs = {name: loss for name, loss in zip(self.loss_names, loss_tensors)}
# tokens per batch
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
logs["tpb"] = (
batch["input_ids"].ne(src_pad_token_id).sum() + batch["decoder_input_ids"].ne(tgt_pad_token_id).sum()
)
self.log("loss", loss_tensors[0])
return loss_tensors[0]
def validation_step(self, batch, batch_idx) -> Dict:
return self._generative_step(batch)
def validation_epoch_end(self, outputs, prefix="val") -> Dict:
self.step_count += 1
losses = {k: torch.stack([x[k] for x in outputs]).mean() for k in self.loss_names}
loss = losses["loss"]
gen_metrics = {
k: np.array([x[k] for x in outputs]).mean() for k in self.metric_names + ["gen_time", "gen_len"]
}
metrics_tensor: torch.FloatTensor = torch.tensor(gen_metrics[self.val_metric]).type_as(loss)
gen_metrics.update({k: v.item() for k, v in losses.items()})
# fix for https://github.com/PyTorchLightning/pytorch-lightning/issues/2424
if dist.is_initialized():
dist.all_reduce(metrics_tensor, op=dist.ReduceOp.SUM)
metrics_tensor = metrics_tensor / dist.get_world_size()
gen_metrics.update({self.val_metric: metrics_tensor.item()})
losses.update(gen_metrics)
metrics = {f"{prefix}_avg_{k}": x for k, x in losses.items()}
metrics["step_count"] = self.step_count
self.save_metrics(metrics, prefix) # writes to self.metrics_save_path
log_dict = {
"val_avg_em": metrics["val_avg_em"],
"step_count": metrics["step_count"],
"val_avg_loss": metrics["val_avg_loss"],
"val_loss": loss,
"val_em": metrics_tensor,
}
self.log_dict(log_dict)
def save_metrics(self, latest_metrics, type_path) -> None:
self.metrics[type_path].append(latest_metrics)
save_json(self.metrics, self.metrics_save_path)
def calc_generative_metrics(self, preds, target) -> Dict:
return calculate_exact_match(preds, target)
def _generative_step(self, batch: dict) -> dict:
start_time = time.time()
batch = BatchEncoding(batch).to(device=self.model.device)
generated_ids = self.model.generate(
batch["input_ids"],
attention_mask=batch["attention_mask"],
do_deduplication=False, # rag specific parameter
use_cache=True,
min_length=1,
max_length=self.target_lens["val"],
)
gen_time = (time.time() - start_time) / batch["input_ids"].shape[0]
preds: List[str] = self.ids_to_clean_text(generated_ids)
target: List[str] = self.ids_to_clean_text(batch["decoder_input_ids"])
# print(preds,target)
loss_tensors = self._step(batch)
base_metrics = {name: loss for name, loss in zip(self.loss_names, loss_tensors)}
gen_metrics: Dict = self.calc_generative_metrics(preds, target)
summ_len = np.mean(lmap(len, generated_ids))
base_metrics.update(gen_time=gen_time, gen_len=summ_len, preds=preds, target=target, **gen_metrics)
return base_metrics
def test_step(self, batch, batch_idx):
return self._generative_step(batch)
def test_epoch_end(self, outputs):
return self.validation_epoch_end(outputs, prefix="test")
def get_dataset(self, type_path) -> Seq2SeqDataset:
n_obs = self.n_obs[type_path]
max_target_length = self.target_lens[type_path]
dataset = Seq2SeqDataset(
self.tokenizer,
type_path=type_path,
n_obs=n_obs,
max_target_length=max_target_length,
**self.dataset_kwargs,
)
return dataset
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
dataset = self.get_dataset(type_path)
dataloader = DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=shuffle,
num_workers=self.num_workers,
)
return dataloader
def train_dataloader(self) -> DataLoader:
dataloader = self.get_dataloader("train", batch_size=self.hparams.train_batch_size, shuffle=True)
return dataloader
def val_dataloader(self) -> DataLoader:
return self.get_dataloader("val", batch_size=self.hparams.eval_batch_size)
def test_dataloader(self) -> DataLoader:
return self.get_dataloader("test", batch_size=self.hparams.eval_batch_size)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("checkpoint{}".format(self.step_count))
self.model.config.save_step = self.step_count
# self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
if self.custom_config.end2end:
modified_state_dict = self.model.state_dict()
for key in self.model.state_dict().keys():
if key.split(".")[1] == "ctx_encoder":
del modified_state_dict[key]
self.model.save_pretrained(save_directory=save_path, state_dict=modified_state_dict)
save_path_dpr = os.path.join(self.dpr_ctx_check_dir, "checkpoint{}".format(self.step_count))
self.model.rag.ctx_encoder.save_pretrained(save_path_dpr)
self.context_tokenizer.save_pretrained(save_path_dpr)
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
add_generic_args(parser, root_dir)
parser.add_argument(
"--max_source_length",
default=128,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument(
"--max_target_length",
default=25,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument(
"--val_max_target_length",
default=25,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument(
"--test_max_target_length",
default=25,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_val", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_test", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--label_smoothing", type=float, default=0.0, required=False)
parser.add_argument(
"--prefix",
type=str,
default=None,
help="Prefix added at the beginning of each text, typically used with T5-based models.",
)
parser.add_argument(
"--early_stopping_patience",
type=int,
default=-1,
required=False,
help="-1 means never early stop. early_stopping_patience is measured in validation checks, not epochs. So val_check_interval will effect it.",
)
parser.add_argument(
"--distributed-port", type=int, default=-1, required=False, help="Port number for distributed training."
)
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart", "t5"],
type=str,
help="RAG model type: sequence or token, if none specified, the type is inferred from the model_name_or_path",
)
parser.add_argument(
"--context_encoder_name",
default="facebook/dpr-ctx_encoder-multiset-base",
type=str,
help="Name of the pre-trained context encoder checkpoint from the DPR",
)
parser.add_argument(
"--csv_path",
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset.csv"),
type=str,
help="path of the raw KB csv",
)
parser.add_argument("--end2end", action="store_true", help="whether to train the system end2end or not")
parser.add_argument("--index_gpus", type=int, help="how many GPUs used in re-encoding process")
parser.add_argument(
"--shard_dir",
type=str,
default=str(Path(__file__).parent / "test_run" / "kb-shards"),
help="directory used to keep temporary shards during the re-encode process",
)
parser.add_argument(
"--gpu_order",
type=str,
help="order of the GPU used during the fine-tuning. Used to finding free GPUs during the re-encode process. I do not have many GPUs :)",
)
parser.add_argument("--indexing_freq", type=int, help="frequency of re-encode process")
return parser
@staticmethod
def add_retriever_specific_args(parser):
parser.add_argument(
"--index_name",
type=str,
default=None,
help="Name of the index to use: 'hf' for a canonical dataset from the datasets library (default), 'custom' for a local index, or 'legacy' for the orignal one)",
)
parser.add_argument(
"--passages_path",
type=str,
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset"),
help="Path to the dataset of passages for custom index. More info about custom indexes in the RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`",
)
parser.add_argument(
"--index_path",
type=str,
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset_hnsw_index.faiss"),
help="Path to the faiss index for custom index. More info about custom indexes in the RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`",
)
parser.add_argument(
"--distributed_retriever",
choices=["ray", "pytorch"],
type=str,
default="ray",
help="What implementation to use for distributed retriever? If "
"pytorch is selected, the index is loaded on training "
"worker 0, and torch.distributed is used to handle "
"communication between training worker 0, and the other "
"training workers. If ray is selected, the Ray library is "
"used to create load the index on separate processes, "
"and Ray handles the communication between the training "
"workers and the retrieval actors.",
)
parser.add_argument(
"--use_dummy_dataset",
type=bool,
default=False,
help="Whether to use the dummy version of the dataset index. More info about custom indexes in the RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`",
)
return parser
@staticmethod
def add_ray_specific_args(parser):
# Ray cluster address.
parser.add_argument(
"--ray-address",
default="auto",
type=str,
help="The address of the Ray cluster to connect to. If not "
"specified, Ray will attempt to automatically detect the "
"cluster. Has no effect if pytorch is used as the distributed "
"retriever.",
)
parser.add_argument(
"--num_retrieval_workers",
type=int,
default=1,
help="The number of retrieval actors to use when Ray is selected"
"for the distributed retriever. Has no effect when "
"distributed_retriever is set to pytorch.",
)
return parser
def main(args=None, model=None) -> GenerativeQAModule:
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
args = args or parser.parse_args()
Path(args.output_dir).mkdir(exist_ok=True)
Path(args.output_dir + "/dpr_ctx_checkpoint").mkdir(
exist_ok=True
) # save dpr_context encoder seprately for the future use
print(args.shard_dir)
if os.path.exists(args.shard_dir): # we do not need previous kb shards used in dataset re-conding and re-indexing
shutil.rmtree(args.shard_dir)
Path(args.shard_dir).mkdir(exist_ok=True)
if os.path.exists(
args.cache_dir
): # we do not need previous cache files used in dataset re-conding and re-indexing
shutil.rmtree(args.cache_dir)
Path(args.cache_dir).mkdir(exist_ok=True)
named_actors = []
if args.distributed_retriever == "ray" and args.gpus > 1:
if not is_ray_available():
raise RuntimeError("Please install Ray to use the Ray " "distributed retriever.")
# Connect to an existing Ray cluster.
try:
ray.init(address=args.ray_address)
except (ConnectionError, ValueError):
logger.warning(
"Connection to Ray cluster failed. Make sure a Ray"
"cluster is running by either using Ray's cluster "
"launcher (`ray up`) or by manually starting Ray on "
"each node via `ray start --head` for the head node "
"and `ray start --address='<ip address>:6379'` for "
"additional nodes. See "
"https://docs.ray.io/en/master/cluster/index.html "
"for more info."
)
raise
# Create Ray actors only for rank 0.
if ("LOCAL_RANK" not in os.environ or os.environ["LOCAL_RANK"] == 0) and (
"NODE_RANK" not in os.environ or os.environ["NODE_RANK"] == 0
):
remote_cls = ray.remote(RayRetriever)
named_actors = [
remote_cls.options(name="retrieval_worker_{}".format(i)).remote()
for i in range(args.num_retrieval_workers)
]
else:
logger.info(
"Getting named actors for NODE_RANK {}, LOCAL_RANK {}".format(
os.environ["NODE_RANK"], os.environ["LOCAL_RANK"]
)
)
named_actors = [ray.get_actor("retrieval_worker_{}".format(i)) for i in range(args.num_retrieval_workers)]
args.actor_handles = named_actors
assert args.actor_handles == named_actors
if model is None:
model: GenerativeQAModule = GenerativeQAModule(args)
dataset = Path(args.data_dir).name
if (
args.logger_name == "default"
or args.fast_dev_run
or str(args.output_dir).startswith("/tmp")
or str(args.output_dir).startswith("/var")
):
training_logger = True # don't pollute wandb logs unnecessarily
elif args.logger_name == "wandb":
from pytorch_lightning.loggers import WandbLogger
project = os.environ.get("WANDB_PROJECT", dataset)
training_logger = WandbLogger(name=model.output_dir.name, project=project)
elif args.logger_name == "wandb_shared":
from pytorch_lightning.loggers import WandbLogger
training_logger = WandbLogger(name=model.output_dir.name, project=f"hf_{dataset}")
es_callback = (
get_early_stopping_callback(model.val_metric, args.early_stopping_patience)
if args.early_stopping_patience >= 0
else False
)
trainer: pl.Trainer = generic_train(
model,
args,
logging_callback=Seq2SeqLoggingCallback(),
checkpoint_callback=get_checkpoint_callback(args.output_dir, model.val_metric),
early_stopping_callback=es_callback,
logger=training_logger,
profiler=pl.profiler.AdvancedProfiler() if args.profile else None,
)
pickle_save(model.hparams, model.output_dir / "hparams.pkl")
if not args.do_predict:
return model
# test() without a model tests using the best checkpoint automatically
trainer.test()
return model
if __name__ == "__main__":
multiprocessing.set_start_method("spawn")
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
parser = GenerativeQAModule.add_ray_specific_args(parser)
# Pytorch Lightning Profiler
parser.add_argument(
"--profile",
action="store_true",
help="If True, use pytorch_lightning.profiler.AdvancedProfiler to profile the Trainer.",
)
args = parser.parse_args()
main(args)
| 33,046 | 40.831646 | 197 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/eval_rag.py | """ Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as transformers_logging
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # isort:skip
from utils_rag import exact_match_score, f1_score # noqa: E402 # isort:skip
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.INFO)
transformers_logging.set_verbosity_info()
def infer_model_type(model_name_or_path):
if "token" in model_name_or_path:
return "rag_token"
if "sequence" in model_name_or_path:
return "rag_sequence"
if "bart" in model_name_or_path:
return "bart"
return None
def metric_max_over_ground_truths(metric_fn, prediction, ground_truths):
return max(metric_fn(prediction, gt) for gt in ground_truths)
def get_scores(args, preds_path, gold_data_path):
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
answers = []
if args.gold_data_mode == "qa":
data = pd.read_csv(gold_data_path, sep="\t", header=None)
for answer_list in data[1]:
ground_truths = ast.literal_eval(answer_list)
answers.append(ground_truths)
else:
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
answers = [[reference] for reference in references]
f1 = em = total = 0
for prediction, ground_truths in zip(hypos, answers):
total += 1
em += metric_max_over_ground_truths(exact_match_score, prediction, ground_truths)
f1 += metric_max_over_ground_truths(f1_score, prediction, ground_truths)
em = 100.0 * em / total
f1 = 100.0 * f1 / total
logger.info(f"F1: {f1:.2f}")
logger.info(f"EM: {em:.2f}")
def get_precision_at_k(args, preds_path, gold_data_path):
k = args.k
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
em = total = 0
for hypo, reference in zip(hypos, references):
hypo_provenance = set(hypo.split("\t")[:k])
ref_provenance = set(reference.split("\t"))
total += 1
em += len(hypo_provenance & ref_provenance) / k
em = 100.0 * em / total
logger.info(f"Precision@{k}: {em: .2f}")
def evaluate_batch_retrieval(args, rag_model, questions):
def strip_title(title):
if title.startswith('"'):
title = title[1:]
if title.endswith('"'):
title = title[:-1]
return title
retriever_input_ids = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions,
return_tensors="pt",
padding=True,
truncation=True,
)["input_ids"].to(args.device)
question_enc_outputs = rag_model.rag.question_encoder(retriever_input_ids)
question_enc_pool_output = question_enc_outputs[0]
result = rag_model.retriever(
retriever_input_ids,
question_enc_pool_output.cpu().detach().to(torch.float32).numpy(),
prefix=rag_model.rag.generator.config.prefix,
n_docs=rag_model.config.n_docs,
return_tensors="pt",
)
all_docs = rag_model.retriever.index.get_doc_dicts(result.doc_ids)
provenance_strings = []
for docs in all_docs:
provenance = [strip_title(title) for title in docs["title"]]
provenance_strings.append("\t".join(provenance))
return provenance_strings
def evaluate_batch_e2e(args, rag_model, questions):
with torch.no_grad():
inputs_dict = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions, return_tensors="pt", padding=True, truncation=True
)
input_ids = inputs_dict.input_ids.to(args.device)
attention_mask = inputs_dict.attention_mask.to(args.device)
outputs = rag_model.generate( # rag_model overwrites generate
input_ids,
attention_mask=attention_mask,
num_beams=args.num_beams,
min_length=args.min_length,
max_length=args.max_length,
early_stopping=False,
num_return_sequences=1,
bad_words_ids=[[0, 0]], # BART likes to repeat BOS tokens, dont allow it to generate more than one
)
answers = rag_model.retriever.generator_tokenizer.batch_decode(outputs, skip_special_tokens=True)
if args.print_predictions:
for q, a in zip(questions, answers):
logger.info("Q: {} - A: {}".format(q, a))
return answers
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart"],
type=str,
help="RAG model type: rag_sequence, rag_token or bart, if none specified, the type is inferred from the model_name_or_path",
)
parser.add_argument(
"--index_name",
default=None,
choices=["exact", "compressed", "legacy"],
type=str,
help="RAG model retriever type",
)
parser.add_argument(
"--index_path",
default=None,
type=str,
help="Path to the retrieval index",
)
parser.add_argument("--n_docs", default=5, type=int, help="Number of retrieved docs")
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained checkpoints or model identifier from huggingface.co/models",
)
parser.add_argument(
"--eval_mode",
choices=["e2e", "retrieval"],
default="e2e",
type=str,
help="Evaluation mode, e2e calculates exact match and F1 of the downstream task, retrieval calculates precision@k.",
)
parser.add_argument("--k", default=1, type=int, help="k for the precision@k calculation")
parser.add_argument(
"--evaluation_set",
default=None,
type=str,
required=True,
help="Path to a file containing evaluation samples",
)
parser.add_argument(
"--gold_data_path",
default=None,
type=str,
required=True,
help="Path to a tab-separated file with gold samples",
)
parser.add_argument(
"--gold_data_mode",
default="qa",
type=str,
choices=["qa", "ans"],
help="Format of the gold data file"
"qa - a single line in the following format: question [tab] answer_list"
"ans - a single line of the gold file contains the expected answer string",
)
parser.add_argument(
"--predictions_path",
type=str,
default="predictions.txt",
help="Name of the predictions file, to be stored in the checkpoints directory",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument(
"--eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--recalculate",
help="Recalculate predictions even if the prediction file exists",
action="store_true",
)
parser.add_argument(
"--num_beams",
default=4,
type=int,
help="Number of beams to be used when generating answers",
)
parser.add_argument("--min_length", default=1, type=int, help="Min length of the generated answers")
parser.add_argument("--max_length", default=50, type=int, help="Max length of the generated answers")
parser.add_argument(
"--print_predictions",
action="store_true",
help="If True, prints predictions while evaluating.",
)
parser.add_argument(
"--print_docs",
action="store_true",
help="If True, prints docs retried while generating.",
)
args = parser.parse_args()
args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
return args
def main(args):
model_kwargs = {}
if args.model_type is None:
args.model_type = infer_model_type(args.model_name_or_path)
assert args.model_type is not None
if args.model_type.startswith("rag"):
model_class = RagTokenForGeneration if args.model_type == "rag_token" else RagSequenceForGeneration
model_kwargs["n_docs"] = args.n_docs
if args.index_name is not None:
model_kwargs["index_name"] = args.index_name
if args.index_path is not None:
model_kwargs["index_path"] = args.index_path
else:
model_class = BartForConditionalGeneration
checkpoints = (
[f.path for f in os.scandir(args.model_name_or_path) if f.is_dir()]
if args.eval_all_checkpoints
else [args.model_name_or_path]
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
score_fn = get_scores if args.eval_mode == "e2e" else get_precision_at_k
evaluate_batch_fn = evaluate_batch_e2e if args.eval_mode == "e2e" else evaluate_batch_retrieval
for checkpoint in checkpoints:
if os.path.exists(args.predictions_path) and (not args.recalculate):
logger.info("Calculating metrics based on an existing predictions file: {}".format(args.predictions_path))
score_fn(args, args.predictions_path, args.gold_data_path)
continue
logger.info("***** Running evaluation for {} *****".format(checkpoint))
logger.info(" Batch size = %d", args.eval_batch_size)
logger.info(" Predictions will be stored under {}".format(args.predictions_path))
if args.model_type.startswith("rag"):
retriever = RagRetriever.from_pretrained(checkpoint, **model_kwargs)
model = model_class.from_pretrained(checkpoint, retriever=retriever, **model_kwargs)
model.retriever.init_retrieval()
else:
model = model_class.from_pretrained(checkpoint, **model_kwargs)
model.to(args.device)
with open(args.evaluation_set, "r") as eval_file, open(args.predictions_path, "w") as preds_file:
questions = []
for line in tqdm(eval_file):
questions.append(line.strip())
if len(questions) == args.eval_batch_size:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers) + "\n")
preds_file.flush()
questions = []
if len(questions) > 0:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers))
preds_file.flush()
score_fn(args, args.predictions_path, args.gold_data_path)
if __name__ == "__main__":
args = get_args()
main(args)
| 11,101 | 34.469649 | 132 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/lightning_base.py | import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.plugins.training_type import DDPPlugin
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [
p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)
], # check this named paramters
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, stage):
if stage == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default=str(Path(__file__).parent / "test_run" / "cache"),
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class InitCallback(pl.Callback):
# this process can also be done with PL ddp plugging.
# But still it is experimental (check original RAG, I updated that with pluggin (shamanez))
def on_sanity_check_start(self, trainer, pl_module):
if (
trainer.is_global_zero and trainer.global_rank == 0
): # we initialize the retriever only on master worker with RAY. In new pytorch-lightning accelorators are removed.
pl_module.model.rag.retriever.init_retrieval() # better to use hook functions.
class CheckParamCallback(pl.Callback):
# check whether new added model paramters are differentiable
def on_after_backward(self, trainer, pl_module):
# print(pl_module.model.rag)
for name, param in pl_module.model.rag.named_parameters():
if param.grad is None:
print(name)
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=str(Path(__file__).parent / "test_run" / "model_checkpoints"),
type=str,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help="For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html",
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=str(Path(__file__).parent / "test_run" / "dummy-train-data"),
type=str,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
# TODO: remove with PyTorch 1.6 since pl uses native amp
if args.fp16:
train_params["precision"] = 16
train_params["amp_level"] = args.fp16_opt_level
if args.gpus > 1:
train_params["accelerator"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
# train_params["accelerator"] = extra_train_kwargs.get("accelerator", None)
train_params["profiler"] = None # extra_train_kwargs.get("profiler", None)
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks + [InitCallback()] + [checkpoint_callback],
logger=logger,
plugins=[DDPPlugin(find_unused_parameters=True)], # this is needed in new pytorch-lightning new version
val_check_interval=1,
num_sanity_val_steps=2,
**train_params,
)
if args.do_train:
trainer.fit(model)
# else:
# print("RAG modeling tests with new set functions successfuly executed!")
return trainer
| 16,400 | 38.425481 | 124 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/callbacks_rag.py | import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_parameters = filter(lambda p: p.requires_grad, model.parameters())
params = sum([np.prod(p.size()) for p in model_parameters])
return params
logger = logging.getLogger(__name__)
def get_checkpoint_callback(output_dir, metric):
"""Saves the best model by validation EM score."""
if metric == "rouge2":
exp = "{val_avg_rouge2:.4f}-{step_count}"
elif metric == "bleu":
exp = "{val_avg_bleu:.4f}-{step_count}"
elif metric == "em":
exp = "{val_avg_em:.4f}-{step_count}"
elif metric == "loss":
exp = "{val_avg_loss:.4f}-{step_count}"
else:
raise NotImplementedError(
f"seq2seq callbacks only support rouge2 and bleu, got {metric}, You can make your own by adding to this function."
)
checkpoint_callback = ModelCheckpoint(
dirpath=output_dir,
filename=exp,
monitor=f"val_{metric}",
mode="max",
save_top_k=1,
every_n_val_epochs=1, # works only with PL > 1.3
)
return checkpoint_callback
def get_early_stopping_callback(metric, patience):
return EarlyStopping(
monitor=f"val_{metric}", # does this need avg?
mode="min" if "loss" in metric else "max",
patience=patience,
verbose=True,
)
class Seq2SeqLoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
pl_module.logger.log_metrics(lrs)
@rank_zero_only
def _write_logs(
self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
) -> None:
logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
metrics = trainer.callback_metrics
trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
# Log results
od = Path(pl_module.hparams.output_dir)
if type_path == "test":
results_file = od / "test_results.txt"
generations_file = od / "test_generations.txt"
else:
# this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
# If people want this it will be easy enough to add back.
results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
results_file.parent.mkdir(exist_ok=True)
generations_file.parent.mkdir(exist_ok=True)
with open(results_file, "a+") as writer:
for key in sorted(metrics):
if key in ["log", "progress_bar", "preds"]:
continue
val = metrics[key]
if isinstance(val, torch.Tensor):
val = val.item()
msg = f"{key}: {val:.6f}\n"
writer.write(msg)
if not save_generations:
return
if "preds" in metrics:
content = "\n".join(metrics["preds"])
generations_file.open("w+").write(content)
@rank_zero_only
def on_train_start(self, trainer, pl_module):
try:
npars = pl_module.model.model.num_parameters()
except AttributeError:
npars = pl_module.model.num_parameters()
n_trainable_pars = count_trainable_parameters(pl_module)
# mp stands for million parameters
trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
@rank_zero_only
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
save_json(pl_module.metrics, pl_module.metrics_save_path)
return self._write_logs(trainer, pl_module, "test")
@rank_zero_only
def on_validation_end(self, trainer: pl.Trainer, pl_module):
save_json(pl_module.metrics, pl_module.metrics_save_path)
# Uncommenting this will save val generations
# return self._write_logs(trainer, pl_module, "valid")
| 4,463 | 36.2 | 126 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/kb_encode_utils.py | import os
from functools import partial
from glob import glob
from datasets import Features, Sequence, Value, concatenate_datasets, load_dataset, load_from_disk
import faiss
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast
def split_text(text, n=100, character=" "):
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents):
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed_update(ctx_encoder, total_processes, device, process_num, shard_dir, csv_path):
kb_dataset = load_dataset(
"csv", data_files=[csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
kb_dataset = kb_dataset.map(
split_documents, batched=True, num_proc=1
) # if you want you can load already splitted csv.
kb_list = [kb_dataset.shard(total_processes, i, contiguous=True) for i in range(total_processes)]
data_shrad = kb_list[process_num]
arrow_folder = "data_" + str(process_num)
passages_path = os.path.join(shard_dir, arrow_folder)
context_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained("facebook/dpr-ctx_encoder-multiset-base")
ctx_encoder = ctx_encoder.to(device=device)
def embed(
documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast, device
) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = data_shrad.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=context_tokenizer, device=device),
batched=True,
batch_size=16,
features=new_features,
)
dataset.save_to_disk(passages_path)
def add_index(shard_dir, index_path):
data_shard_list = []
for shard_address in glob(str(shard_dir) + "/*/"):
data_shard_list.append(load_from_disk(shard_address))
concat = concatenate_datasets(data_shard_list)
faiss.omp_set_num_threads(96)
index = faiss.IndexHNSWFlat(768, 128, faiss.METRIC_INNER_PRODUCT)
concat.add_faiss_index("embeddings", custom_index=index)
concat.get_index("embeddings").save(
index_path
) # since we load the index in to memory,we can directly update the index in the disk
| 3,179 | 37.780488 | 112 | py |
robust-transformers | robust-transformers-main/examples/research_projects/rag-end2end-retriever/distributed_ray_retriever.py | import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(self, config, question_encoder_tokenizer, generator_tokenizer, index):
if not self.initialized:
self.retriever = RagRetriever(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.initialized = True
def init_retrieval(self):
self.retriever.index.init_index()
def clear_object(self):
# delete the old self.retriever object before assigning the new index
del self.retriever
self.initialized = False
def retrieve(self, question_hidden_states, n_docs):
doc_ids, retrieved_doc_embeds = self.retriever._main_retrieve(question_hidden_states, n_docs)
doc_dicts = self.retriever.index.get_doc_dicts(doc_ids)
return doc_ids, retrieved_doc_embeds, doc_dicts
class RagRayDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``Ray`` API, a library
for building distributed applications (https://docs.ray.io/en/master/).
package. During training, all training workers initialize their own
instance of a `RagRayDistributedRetriever`, and each instance of
this distributed retriever shares a common set of Retrieval Ray
Actors (https://docs.ray.io/en/master/walkthrough.html#remote
-classes-actors) that load the index on separate processes. Ray
handles the communication between the `RagRayDistributedRetriever`
instances and the remote Ray actors. If training is done in a
non-distributed setup, the index will simply be loaded in the same
process as the training worker and Ray will not be used.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
retrieval_workers (:obj:`List[ray.ActorClass(RayRetriever)]`): A list of already initialized `RayRetriever` actors.
These actor classes run on remote processes and are responsible for performing the index lookup.
index (:class:`~transformers.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, retrieval_workers, index=None):
if index is not None and index.is_initialized() and len(retrieval_workers) > 0:
raise ValueError(
"When using Ray for distributed fine-tuning, "
"you'll need to provide the paths instead, "
"as the dataset and the index are loaded "
"separately. More info in examples/rag/use_own_knowledge_dataset.py "
)
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.retrieval_workers = retrieval_workers
self.question_encoder_tokenizer = question_encoder_tokenizer
self.generator_tokenizer = generator_tokenizer
if len(self.retrieval_workers) > 0:
ray.get(
[
worker.create_rag_retriever.remote(config, question_encoder_tokenizer, generator_tokenizer, index)
for worker in self.retrieval_workers
]
)
def init_retrieval(self):
"""
Retriever initialization function, needs to be called from the
training process. This function triggers retrieval initialization
for all retrieval actors if using distributed setting, or loads
index into current process if training is not distributed.
"""
logger.info("initializing retrieval")
if len(self.retrieval_workers) > 0:
ray.get([worker.init_retrieval.remote() for worker in self.retrieval_workers])
else:
# Non-distributed training. Load index into this same process.
self.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
"""
Retrieves documents for specified ``question_hidden_states``. If
running training with multiple workers, a random retrieval actor is
selected to perform the index lookup and return the result.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
if len(self.retrieval_workers) > 0:
# Select a random retrieval actor.
random_worker = self.retrieval_workers[random.randint(0, len(self.retrieval_workers) - 1)]
doc_ids, retrieved_doc_embeds, doc_dicts = ray.get(
random_worker.retrieve.remote(question_hidden_states, n_docs)
)
else:
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
doc_dicts = self.index.get_doc_dicts(doc_ids)
return retrieved_doc_embeds, doc_ids, doc_dicts
@classmethod
def get_tokenizers(cls, retriever_name_or_path, indexed_dataset=None, **kwargs):
return super(RagRayDistributedRetriever, cls).get_tokenizers(retriever_name_or_path, indexed_dataset, **kwargs)
@classmethod
def from_pretrained(cls, retriever_name_or_path, actor_handles, indexed_dataset=None, **kwargs):
config = kwargs.pop("config", None) or RagConfig.from_pretrained(retriever_name_or_path, **kwargs)
rag_tokenizer = RagTokenizer.from_pretrained(retriever_name_or_path, config=config)
question_encoder_tokenizer = rag_tokenizer.question_encoder
generator_tokenizer = rag_tokenizer.generator
if indexed_dataset is not None:
config.index_name = "custom"
index = CustomHFIndex(config.retrieval_vector_size, indexed_dataset)
else:
index = cls._build_index(config)
return cls(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
retrieval_workers=actor_handles,
index=index,
)
def re_load(self):
logger.info("re-loading the new dataset with embeddings")
# access from the training loop
ray.get([worker.clear_object.remote() for worker in self.retrieval_workers])
# build the index object again
index = self._build_index(self.config)
ray.get(
[
worker.create_rag_retriever.remote(
self.config, self.question_encoder_tokenizer, self.generator_tokenizer, index
)
for worker in self.retrieval_workers
]
)
| 8,211 | 43.150538 | 132 | py |
robust-transformers | robust-transformers-main/examples/research_projects/movement-pruning/counts_parameters.py | # Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Count remaining (non-zero) weights in the encoder (i.e. the transformer layers).
Sparsity and remaining weights levels are equivalent: sparsity % = 100 - remaining weights %.
"""
import argparse
import os
import torch
from emmental.modules import ThresholdBinarizer, TopKBinarizer
def main(args):
serialization_dir = args.serialization_dir
pruning_method = args.pruning_method
threshold = args.threshold
st = torch.load(os.path.join(serialization_dir, "pytorch_model.bin"), map_location="cpu")
remaining_count = 0 # Number of remaining (not pruned) params in the encoder
encoder_count = 0 # Number of params in the encoder
print("name".ljust(60, " "), "Remaining Weights %", "Remaining Weight")
for name, param in st.items():
if "encoder" not in name:
continue
if "mask_scores" in name:
if pruning_method == "topK":
mask_ones = TopKBinarizer.apply(param, threshold).sum().item()
elif pruning_method == "sigmoied_threshold":
mask_ones = ThresholdBinarizer.apply(param, threshold, True).sum().item()
elif pruning_method == "l0":
l, r = -0.1, 1.1
s = torch.sigmoid(param)
s_bar = s * (r - l) + l
mask = s_bar.clamp(min=0.0, max=1.0)
mask_ones = (mask > 0.0).sum().item()
else:
raise ValueError("Unknown pruning method")
remaining_count += mask_ones
print(name.ljust(60, " "), str(round(100 * mask_ones / param.numel(), 3)).ljust(20, " "), str(mask_ones))
else:
encoder_count += param.numel()
if "bias" in name or "LayerNorm" in name:
remaining_count += param.numel()
print("")
print("Remaining Weights (global) %: ", 100 * remaining_count / encoder_count)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--pruning_method",
choices=["l0", "topK", "sigmoied_threshold"],
type=str,
required=True,
help="Pruning Method (l0 = L0 regularization, topK = Movement pruning, sigmoied_threshold = Soft movement pruning)",
)
parser.add_argument(
"--threshold",
type=float,
required=False,
help="For `topK`, it is the level of remaining weights (in %) in the fine-pruned model."
"For `sigmoied_threshold`, it is the threshold \tau against which the (sigmoied) scores are compared."
"Not needed for `l0`",
)
parser.add_argument(
"--serialization_dir",
type=str,
required=True,
help="Folder containing the model that was previously fine-pruned",
)
args = parser.parse_args()
main(args)
| 3,395 | 35.516129 | 124 | py |
robust-transformers | robust-transformers-main/examples/research_projects/movement-pruning/masked_run_glue.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-pruning Masked BERT on sequence classification on GLUE."""
import argparse
import glob
import json
import logging
import os
import random
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
from emmental import MaskedBertConfig, MaskedBertForSequenceClassification
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertForSequenceClassification,
BertTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForSequenceClassification, BertTokenizer),
"masked_bert": (MaskedBertConfig, MaskedBertForSequenceClassification, BertTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def schedule_threshold(
step: int,
total_step: int,
warmup_steps: int,
initial_threshold: float,
final_threshold: float,
initial_warmup: int,
final_warmup: int,
final_lambda: float,
):
if step <= initial_warmup * warmup_steps:
threshold = initial_threshold
elif step > (total_step - final_warmup * warmup_steps):
threshold = final_threshold
else:
spars_warmup_steps = initial_warmup * warmup_steps
spars_schedu_steps = (final_warmup + initial_warmup) * warmup_steps
mul_coeff = 1 - (step - spars_warmup_steps) / (total_step - spars_schedu_steps)
threshold = final_threshold + (initial_threshold - final_threshold) * (mul_coeff**3)
regu_lambda = final_lambda * threshold / final_threshold
return threshold, regu_lambda
def regularization(model: nn.Module, mode: str):
regu, counter = 0, 0
for name, param in model.named_parameters():
if "mask_scores" in name:
if mode == "l1":
regu += torch.norm(torch.sigmoid(param), p=1) / param.numel()
elif mode == "l0":
regu += torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1)).sum() / param.numel()
else:
ValueError("Don't know this mode.")
counter += 1
return regu / counter
def train(args, train_dataset, model, tokenizer, teacher=None):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter(log_dir=args.output_dir)
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if "mask_score" in n and p.requires_grad],
"lr": args.mask_scores_learning_rate,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and not any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model,
device_ids=[args.local_rank],
output_device=args.local_rank,
find_unused_parameters=True,
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
# Distillation
if teacher is not None:
logger.info(" Training with distillation")
global_step = 0
# Global TopK
if args.global_topk:
threshold_mem = None
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
# set global_step to global_step of last saved checkpoint from model path
try:
global_step = int(args.model_name_or_path.split("-")[-1].split("/")[0])
except ValueError:
global_step = 0
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(" Will skip the first %d steps in the first epoch", steps_trained_in_current_epoch)
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained,
int(args.num_train_epochs),
desc="Epoch",
disable=args.local_rank not in [-1, 0],
)
set_seed(args) # Added here for reproducibility
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
threshold, regu_lambda = schedule_threshold(
step=global_step,
total_step=t_total,
warmup_steps=args.warmup_steps,
final_threshold=args.final_threshold,
initial_threshold=args.initial_threshold,
final_warmup=args.final_warmup,
initial_warmup=args.initial_warmup,
final_lambda=args.final_lambda,
)
# Global TopK
if args.global_topk:
if threshold == 1.0:
threshold = -1e2 # Or an indefinitely low quantity
else:
if (threshold_mem is None) or (global_step % args.global_topk_frequency_compute == 0):
# Sort all the values to get the global topK
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
threshold = threshold_mem
else:
threshold = threshold_mem
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "masked_bert", "xlnet", "albert"] else None
) # XLM, DistilBERT, RoBERTa, and XLM-RoBERTa don't use segment_ids
if "masked" in args.model_type:
inputs["threshold"] = threshold
outputs = model(**inputs)
loss, logits_stu = outputs # model outputs are always tuple in transformers (see doc)
# Distillation loss
if teacher is not None:
if "token_type_ids" not in inputs:
inputs["token_type_ids"] = None if args.teacher_type == "xlm" else batch[2]
with torch.no_grad():
(logits_tea,) = teacher(
input_ids=inputs["input_ids"],
token_type_ids=inputs["token_type_ids"],
attention_mask=inputs["attention_mask"],
)
loss_logits = nn.functional.kl_div(
input=nn.functional.log_softmax(logits_stu / args.temperature, dim=-1),
target=nn.functional.softmax(logits_tea / args.temperature, dim=-1),
reduction="batchmean",
) * (args.temperature**2)
loss = args.alpha_distil * loss_logits + args.alpha_ce * loss
# Regularization
if args.regularization is not None:
regu_ = regularization(model=model, mode=args.regularization)
loss = loss + regu_lambda * regu_
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0 or (
# last step in epoch but step is always smaller than gradient_accumulation_steps
len(epoch_iterator) <= args.gradient_accumulation_steps
and (step + 1) == len(epoch_iterator)
):
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
tb_writer.add_scalar("threshold", threshold, global_step)
for name, param in model.named_parameters():
if not param.requires_grad:
continue
tb_writer.add_scalar("parameter_mean/" + name, param.data.mean(), global_step)
tb_writer.add_scalar("parameter_std/" + name, param.data.std(), global_step)
tb_writer.add_scalar("parameter_min/" + name, param.data.min(), global_step)
tb_writer.add_scalar("parameter_max/" + name, param.data.max(), global_step)
tb_writer.add_scalar("grad_mean/" + name, param.grad.data.mean(), global_step)
tb_writer.add_scalar("grad_std/" + name, param.grad.data.std(), global_step)
if args.regularization is not None and "mask_scores" in name:
if args.regularization == "l1":
perc = (torch.sigmoid(param) > threshold).sum().item() / param.numel()
elif args.regularization == "l0":
perc = (torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1))).sum().item() / param.numel()
tb_writer.add_scalar("retained_weights_perc/" + name, perc, global_step)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
logs = {}
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
eval_key = "eval_{}".format(key)
logs[eval_key] = value
loss_scalar = (tr_loss - logging_loss) / args.logging_steps
learning_rate_scalar = scheduler.get_lr()
logs["learning_rate"] = learning_rate_scalar[0]
if len(learning_rate_scalar) > 1:
for idx, lr in enumerate(learning_rate_scalar[1:]):
logs[f"learning_rate/{idx+1}"] = lr
logs["loss"] = loss_scalar
if teacher is not None:
logs["loss/distil"] = loss_logits.item()
if args.regularization is not None:
logs["loss/regularization"] = regu_.item()
if (teacher is not None) or (args.regularization is not None):
if (teacher is not None) and (args.regularization is not None):
logs["loss/instant_ce"] = (
loss.item()
- regu_lambda * logs["loss/regularization"]
- args.alpha_distil * logs["loss/distil"]
) / args.alpha_ce
elif teacher is not None:
logs["loss/instant_ce"] = (
loss.item() - args.alpha_distil * logs["loss/distil"]
) / args.alpha_ce
else:
logs["loss/instant_ce"] = loss.item() - regu_lambda * logs["loss/regularization"]
logging_loss = tr_loss
for key, value in logs.items():
tb_writer.add_scalar(key, value, global_step)
print(json.dumps({**logs, **{"step": global_step}}))
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "/MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
# Global TopK
if args.global_topk:
threshold_mem = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "masked_bert", "xlnet", "albert"] else None
) # XLM, DistilBERT, RoBERTa, and XLM-RoBERTa don't use segment_ids
if "masked" in args.model_type:
inputs["threshold"] = args.final_threshold
if args.global_topk:
if threshold_mem is None:
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * args.final_threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
inputs["threshold"] = threshold_mem
outputs = model(**inputs)
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
from scipy.special import softmax
probs = softmax(preds, axis=-1)
entropy = np.exp((-probs * np.log(probs)).sum(axis=-1).mean())
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
if entropy is not None:
result["eval_avg_entropy"] = entropy
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta", "xlmroberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
max_length=args.max_seq_length,
label_list=label_list,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help="The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded.",
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training",
action="store_true",
help="Run evaluation during training at each logging step.",
)
parser.add_argument(
"--do_lower_case",
action="store_true",
help="Set this flag if you are using an uncased model.",
)
parser.add_argument(
"--per_gpu_train_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for training.",
)
parser.add_argument(
"--per_gpu_eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
# Pruning parameters
parser.add_argument(
"--mask_scores_learning_rate",
default=1e-2,
type=float,
help="The Adam initial learning rate of the mask scores.",
)
parser.add_argument(
"--initial_threshold", default=1.0, type=float, help="Initial value of the threshold (for scheduling)."
)
parser.add_argument(
"--final_threshold", default=0.7, type=float, help="Final value of the threshold (for scheduling)."
)
parser.add_argument(
"--initial_warmup",
default=1,
type=int,
help="Run `initial_warmup` * `warmup_steps` steps of threshold warmup during which threshold stays"
"at its `initial_threshold` value (sparsity schedule).",
)
parser.add_argument(
"--final_warmup",
default=2,
type=int,
help="Run `final_warmup` * `warmup_steps` steps of threshold cool-down during which threshold stays"
"at its final_threshold value (sparsity schedule).",
)
parser.add_argument(
"--pruning_method",
default="topK",
type=str,
help="Pruning Method (l0 = L0 regularization, magnitude = Magnitude pruning, topK = Movement pruning, sigmoied_threshold = Soft movement pruning).",
)
parser.add_argument(
"--mask_init",
default="constant",
type=str,
help="Initialization method for the mask scores. Choices: constant, uniform, kaiming.",
)
parser.add_argument(
"--mask_scale", default=0.0, type=float, help="Initialization parameter for the chosen initialization method."
)
parser.add_argument("--regularization", default=None, help="Add L0 or L1 regularization to the mask scores.")
parser.add_argument(
"--final_lambda",
default=0.0,
type=float,
help="Regularization intensity (used in conjunction with `regularization`.",
)
parser.add_argument("--global_topk", action="store_true", help="Global TopK on the Scores.")
parser.add_argument(
"--global_topk_frequency_compute",
default=25,
type=int,
help="Frequency at which we compute the TopK global threshold.",
)
# Distillation parameters (optional)
parser.add_argument(
"--teacher_type",
default=None,
type=str,
help="Teacher type. Teacher tokenizer and student (model) tokenizer must output the same tokenization. Only for distillation.",
)
parser.add_argument(
"--teacher_name_or_path",
default=None,
type=str,
help="Path to the already fine-tuned teacher model. Only for distillation.",
)
parser.add_argument(
"--alpha_ce", default=0.5, type=float, help="Cross entropy loss linear weight. Only for distillation."
)
parser.add_argument(
"--alpha_distil", default=0.5, type=float, help="Distillation loss linear weight. Only for distillation."
)
parser.add_argument(
"--temperature", default=2.0, type=float, help="Distillation temperature. Only for distillation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs",
default=3.0,
type=float,
help="Total number of training epochs to perform.",
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir",
action="store_true",
help="Overwrite the content of the output directory",
)
parser.add_argument(
"--overwrite_cache",
action="store_true",
help="Overwrite the cached training and evaluation sets",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help="For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html",
)
parser.add_argument("--local_rank", type=int, default=-1, help="For distributed training: local_rank")
args = parser.parse_args()
# Regularization
if args.regularization == "null":
args.regularization = None
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({args.output_dir}) already exists and is not empty. Use --overwrite_output_dir to overcome."
)
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of synchronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
pruning_method=args.pruning_method,
mask_init=args.mask_init,
mask_scale=args.mask_scale,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
cache_dir=args.cache_dir if args.cache_dir else None,
do_lower_case=args.do_lower_case,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.teacher_type is not None:
assert args.teacher_name_or_path is not None
assert args.alpha_distil > 0.0
assert args.alpha_distil + args.alpha_ce > 0.0
teacher_config_class, teacher_model_class, _ = MODEL_CLASSES[args.teacher_type]
teacher_config = teacher_config_class.from_pretrained(args.teacher_name_or_path)
teacher = teacher_model_class.from_pretrained(
args.teacher_name_or_path,
from_tf=False,
config=teacher_config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
teacher.to(args.device)
else:
teacher = None
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer, teacher=teacher)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = list(
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
model.to(args.device)
result = evaluate(args, model, tokenizer, prefix=prefix)
result = dict((k + "_{}".format(global_step), v) for k, v in result.items())
results.update(result)
return results
if __name__ == "__main__":
main()
| 40,528 | 41.662105 | 156 | py |
robust-transformers | robust-transformers-main/examples/research_projects/movement-pruning/bertarize.py | # Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Once a model has been fine-pruned, the weights that are masked during the forward pass can be pruned once for all.
For instance, once the a model from the :class:`~emmental.MaskedBertForSequenceClassification` is trained, it can be saved (and then loaded)
as a standard :class:`~transformers.BertForSequenceClassification`.
"""
import argparse
import os
import shutil
import torch
from emmental.modules import MagnitudeBinarizer, ThresholdBinarizer, TopKBinarizer
def main(args):
pruning_method = args.pruning_method
threshold = args.threshold
model_name_or_path = args.model_name_or_path.rstrip("/")
target_model_path = args.target_model_path
print(f"Load fine-pruned model from {model_name_or_path}")
model = torch.load(os.path.join(model_name_or_path, "pytorch_model.bin"))
pruned_model = {}
for name, tensor in model.items():
if "embeddings" in name or "LayerNorm" in name or "pooler" in name:
pruned_model[name] = tensor
print(f"Copied layer {name}")
elif "classifier" in name or "qa_output" in name:
pruned_model[name] = tensor
print(f"Copied layer {name}")
elif "bias" in name:
pruned_model[name] = tensor
print(f"Copied layer {name}")
else:
if pruning_method == "magnitude":
mask = MagnitudeBinarizer.apply(inputs=tensor, threshold=threshold)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
elif pruning_method == "topK":
if "mask_scores" in name:
continue
prefix_ = name[:-6]
scores = model[f"{prefix_}mask_scores"]
mask = TopKBinarizer.apply(scores, threshold)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
elif pruning_method == "sigmoied_threshold":
if "mask_scores" in name:
continue
prefix_ = name[:-6]
scores = model[f"{prefix_}mask_scores"]
mask = ThresholdBinarizer.apply(scores, threshold, True)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
elif pruning_method == "l0":
if "mask_scores" in name:
continue
prefix_ = name[:-6]
scores = model[f"{prefix_}mask_scores"]
l, r = -0.1, 1.1
s = torch.sigmoid(scores)
s_bar = s * (r - l) + l
mask = s_bar.clamp(min=0.0, max=1.0)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
else:
raise ValueError("Unknown pruning method")
if target_model_path is None:
target_model_path = os.path.join(
os.path.dirname(model_name_or_path), f"bertarized_{os.path.basename(model_name_or_path)}"
)
if not os.path.isdir(target_model_path):
shutil.copytree(model_name_or_path, target_model_path)
print(f"\nCreated folder {target_model_path}")
torch.save(pruned_model, os.path.join(target_model_path, "pytorch_model.bin"))
print("\nPruned model saved! See you later!")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--pruning_method",
choices=["l0", "magnitude", "topK", "sigmoied_threshold"],
type=str,
required=True,
help="Pruning Method (l0 = L0 regularization, magnitude = Magnitude pruning, topK = Movement pruning, sigmoied_threshold = Soft movement pruning)",
)
parser.add_argument(
"--threshold",
type=float,
required=False,
help="For `magnitude` and `topK`, it is the level of remaining weights (in %) in the fine-pruned model."
"For `sigmoied_threshold`, it is the threshold \tau against which the (sigmoied) scores are compared."
"Not needed for `l0`",
)
parser.add_argument(
"--model_name_or_path",
type=str,
required=True,
help="Folder containing the model that was previously fine-pruned",
)
parser.add_argument(
"--target_model_path",
default=None,
type=str,
required=False,
help="Folder containing the model that was previously fine-pruned",
)
args = parser.parse_args()
main(args)
| 5,086 | 37.24812 | 155 | py |
robust-transformers | robust-transformers-main/examples/research_projects/movement-pruning/masked_run_squad.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-pruning Masked BERT for question-answering on SQuAD."""
import argparse
import glob
import logging
import os
import random
import timeit
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
from emmental import MaskedBertConfig, MaskedBertForQuestionAnswering
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertForQuestionAnswering,
BertTokenizer,
get_linear_schedule_with_warmup,
squad_convert_examples_to_features,
)
from transformers.data.metrics.squad_metrics import (
compute_predictions_log_probs,
compute_predictions_logits,
squad_evaluate,
)
from transformers.data.processors.squad import SquadResult, SquadV1Processor, SquadV2Processor
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForQuestionAnswering, BertTokenizer),
"masked_bert": (MaskedBertConfig, MaskedBertForQuestionAnswering, BertTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def schedule_threshold(
step: int,
total_step: int,
warmup_steps: int,
initial_threshold: float,
final_threshold: float,
initial_warmup: int,
final_warmup: int,
final_lambda: float,
):
if step <= initial_warmup * warmup_steps:
threshold = initial_threshold
elif step > (total_step - final_warmup * warmup_steps):
threshold = final_threshold
else:
spars_warmup_steps = initial_warmup * warmup_steps
spars_schedu_steps = (final_warmup + initial_warmup) * warmup_steps
mul_coeff = 1 - (step - spars_warmup_steps) / (total_step - spars_schedu_steps)
threshold = final_threshold + (initial_threshold - final_threshold) * (mul_coeff**3)
regu_lambda = final_lambda * threshold / final_threshold
return threshold, regu_lambda
def regularization(model: nn.Module, mode: str):
regu, counter = 0, 0
for name, param in model.named_parameters():
if "mask_scores" in name:
if mode == "l1":
regu += torch.norm(torch.sigmoid(param), p=1) / param.numel()
elif mode == "l0":
regu += torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1)).sum() / param.numel()
else:
ValueError("Don't know this mode.")
counter += 1
return regu / counter
def to_list(tensor):
return tensor.detach().cpu().tolist()
def train(args, train_dataset, model, tokenizer, teacher=None):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter(log_dir=args.output_dir)
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if "mask_score" in n and p.requires_grad],
"lr": args.mask_scores_learning_rate,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and not any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model,
device_ids=[args.local_rank],
output_device=args.local_rank,
find_unused_parameters=True,
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
# Distillation
if teacher is not None:
logger.info(" Training with distillation")
global_step = 1
# Global TopK
if args.global_topk:
threshold_mem = None
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
# set global_step to global_step of last saved checkpoint from model path
try:
checkpoint_suffix = args.model_name_or_path.split("-")[-1].split("/")[0]
global_step = int(checkpoint_suffix)
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(" Will skip the first %d steps in the first epoch", steps_trained_in_current_epoch)
except ValueError:
logger.info(" Starting fine-tuning.")
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained, int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0]
)
# Added here for reproducibility
set_seed(args)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
threshold, regu_lambda = schedule_threshold(
step=global_step,
total_step=t_total,
warmup_steps=args.warmup_steps,
final_threshold=args.final_threshold,
initial_threshold=args.initial_threshold,
final_warmup=args.final_warmup,
initial_warmup=args.initial_warmup,
final_lambda=args.final_lambda,
)
# Global TopK
if args.global_topk:
if threshold == 1.0:
threshold = -1e2 # Or an indefinitely low quantity
else:
if (threshold_mem is None) or (global_step % args.global_topk_frequency_compute == 0):
# Sort all the values to get the global topK
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
threshold = threshold_mem
else:
threshold = threshold_mem
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"token_type_ids": batch[2],
"start_positions": batch[3],
"end_positions": batch[4],
}
if args.model_type in ["xlm", "roberta", "distilbert", "camembert"]:
del inputs["token_type_ids"]
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[5], "p_mask": batch[6]})
if args.version_2_with_negative:
inputs.update({"is_impossible": batch[7]})
if hasattr(model, "config") and hasattr(model.config, "lang2id"):
inputs.update(
{"langs": (torch.ones(batch[0].shape, dtype=torch.int64) * args.lang_id).to(args.device)}
)
if "masked" in args.model_type:
inputs["threshold"] = threshold
outputs = model(**inputs)
# model outputs are always tuple in transformers (see doc)
loss, start_logits_stu, end_logits_stu = outputs
# Distillation loss
if teacher is not None:
with torch.no_grad():
start_logits_tea, end_logits_tea = teacher(
input_ids=inputs["input_ids"],
token_type_ids=inputs["token_type_ids"],
attention_mask=inputs["attention_mask"],
)
loss_start = nn.functional.kl_div(
input=nn.functional.log_softmax(start_logits_stu / args.temperature, dim=-1),
target=nn.functional.softmax(start_logits_tea / args.temperature, dim=-1),
reduction="batchmean",
) * (args.temperature**2)
loss_end = nn.functional.kl_div(
input=nn.functional.log_softmax(end_logits_stu / args.temperature, dim=-1),
target=nn.functional.softmax(end_logits_tea / args.temperature, dim=-1),
reduction="batchmean",
) * (args.temperature**2)
loss_logits = (loss_start + loss_end) / 2.0
loss = args.alpha_distil * loss_logits + args.alpha_ce * loss
# Regularization
if args.regularization is not None:
regu_ = regularization(model=model, mode=args.regularization)
loss = loss + regu_lambda * regu_
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
tb_writer.add_scalar("threshold", threshold, global_step)
for name, param in model.named_parameters():
if not param.requires_grad:
continue
tb_writer.add_scalar("parameter_mean/" + name, param.data.mean(), global_step)
tb_writer.add_scalar("parameter_std/" + name, param.data.std(), global_step)
tb_writer.add_scalar("parameter_min/" + name, param.data.min(), global_step)
tb_writer.add_scalar("parameter_max/" + name, param.data.max(), global_step)
if "pooler" in name:
continue
tb_writer.add_scalar("grad_mean/" + name, param.grad.data.mean(), global_step)
tb_writer.add_scalar("grad_std/" + name, param.grad.data.std(), global_step)
if args.regularization is not None and "mask_scores" in name:
if args.regularization == "l1":
perc = (torch.sigmoid(param) > threshold).sum().item() / param.numel()
elif args.regularization == "l0":
perc = (torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1))).sum().item() / param.numel()
tb_writer.add_scalar("retained_weights_perc/" + name, perc, global_step)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
# Log metrics
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Only evaluate when single GPU otherwise metrics may not average well
if args.local_rank == -1 and args.evaluate_during_training:
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
learning_rate_scalar = scheduler.get_lr()
tb_writer.add_scalar("lr", learning_rate_scalar[0], global_step)
if len(learning_rate_scalar) > 1:
for idx, lr in enumerate(learning_rate_scalar[1:]):
tb_writer.add_scalar(f"lr/{idx+1}", lr, global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
if teacher is not None:
tb_writer.add_scalar("loss/distil", loss_logits.item(), global_step)
if args.regularization is not None:
tb_writer.add_scalar("loss/regularization", regu_.item(), global_step)
if (teacher is not None) or (args.regularization is not None):
if (teacher is not None) and (args.regularization is not None):
tb_writer.add_scalar(
"loss/instant_ce",
(loss.item() - regu_lambda * regu_.item() - args.alpha_distil * loss_logits.item())
/ args.alpha_ce,
global_step,
)
elif teacher is not None:
tb_writer.add_scalar(
"loss/instant_ce",
(loss.item() - args.alpha_distil * loss_logits.item()) / args.alpha_ce,
global_step,
)
else:
tb_writer.add_scalar(
"loss/instant_ce", loss.item() - regu_lambda * regu_.item(), global_step
)
logging_loss = tr_loss
# Save model checkpoint
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
dataset, examples, features = load_and_cache_examples(args, tokenizer, evaluate=True, output_examples=True)
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(dataset)
eval_dataloader = DataLoader(dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
all_results = []
start_time = timeit.default_timer()
# Global TopK
if args.global_topk:
threshold_mem = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"token_type_ids": batch[2],
}
if args.model_type in ["xlm", "roberta", "distilbert", "camembert"]:
del inputs["token_type_ids"]
example_indices = batch[3]
# XLNet and XLM use more arguments for their predictions
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[4], "p_mask": batch[5]})
# for lang_id-sensitive xlm models
if hasattr(model, "config") and hasattr(model.config, "lang2id"):
inputs.update(
{"langs": (torch.ones(batch[0].shape, dtype=torch.int64) * args.lang_id).to(args.device)}
)
if "masked" in args.model_type:
inputs["threshold"] = args.final_threshold
if args.global_topk:
if threshold_mem is None:
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * args.final_threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
inputs["threshold"] = threshold_mem
outputs = model(**inputs)
for i, example_index in enumerate(example_indices):
eval_feature = features[example_index.item()]
unique_id = int(eval_feature.unique_id)
output = [to_list(output[i]) for output in outputs]
# Some models (XLNet, XLM) use 5 arguments for their predictions, while the other "simpler"
# models only use two.
if len(output) >= 5:
start_logits = output[0]
start_top_index = output[1]
end_logits = output[2]
end_top_index = output[3]
cls_logits = output[4]
result = SquadResult(
unique_id,
start_logits,
end_logits,
start_top_index=start_top_index,
end_top_index=end_top_index,
cls_logits=cls_logits,
)
else:
start_logits, end_logits = output
result = SquadResult(unique_id, start_logits, end_logits)
all_results.append(result)
evalTime = timeit.default_timer() - start_time
logger.info(" Evaluation done in total %f secs (%f sec per example)", evalTime, evalTime / len(dataset))
# Compute predictions
output_prediction_file = os.path.join(args.output_dir, "predictions_{}.json".format(prefix))
output_nbest_file = os.path.join(args.output_dir, "nbest_predictions_{}.json".format(prefix))
if args.version_2_with_negative:
output_null_log_odds_file = os.path.join(args.output_dir, "null_odds_{}.json".format(prefix))
else:
output_null_log_odds_file = None
# XLNet and XLM use a more complex post-processing procedure
if args.model_type in ["xlnet", "xlm"]:
start_n_top = model.config.start_n_top if hasattr(model, "config") else model.module.config.start_n_top
end_n_top = model.config.end_n_top if hasattr(model, "config") else model.module.config.end_n_top
predictions = compute_predictions_log_probs(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
start_n_top,
end_n_top,
args.version_2_with_negative,
tokenizer,
args.verbose_logging,
)
else:
predictions = compute_predictions_logits(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
args.do_lower_case,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
args.verbose_logging,
args.version_2_with_negative,
args.null_score_diff_threshold,
tokenizer,
)
# Compute the F1 and exact scores.
results = squad_evaluate(examples, predictions)
return results
def load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False):
if args.local_rank not in [-1, 0] and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
# Load data features from cache or dataset file
input_dir = args.data_dir if args.data_dir else "."
cached_features_file = os.path.join(
input_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
args.tokenizer_name
if args.tokenizer_name
else list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
list(filter(None, args.predict_file.split("/"))).pop()
if evaluate
else list(filter(None, args.train_file.split("/"))).pop(),
),
)
# Init features and dataset from cache if it exists
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features_and_dataset = torch.load(cached_features_file)
features, dataset, examples = (
features_and_dataset["features"],
features_and_dataset["dataset"],
features_and_dataset["examples"],
)
else:
logger.info("Creating features from dataset file at %s", input_dir)
if not args.data_dir and ((evaluate and not args.predict_file) or (not evaluate and not args.train_file)):
try:
import tensorflow_datasets as tfds
except ImportError:
raise ImportError("If not data_dir is specified, tensorflow_datasets needs to be installed.")
if args.version_2_with_negative:
logger.warning("tensorflow_datasets does not handle version 2 of SQuAD.")
tfds_examples = tfds.load("squad")
examples = SquadV1Processor().get_examples_from_dataset(tfds_examples, evaluate=evaluate)
else:
processor = SquadV2Processor() if args.version_2_with_negative else SquadV1Processor()
if evaluate:
examples = processor.get_dev_examples(args.data_dir, filename=args.predict_file)
else:
examples = processor.get_train_examples(args.data_dir, filename=args.train_file)
features, dataset = squad_convert_examples_to_features(
examples=examples,
tokenizer=tokenizer,
max_seq_length=args.max_seq_length,
doc_stride=args.doc_stride,
max_query_length=args.max_query_length,
is_training=not evaluate,
return_dataset="pt",
threads=args.threads,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save({"features": features, "dataset": dataset, "examples": examples}, cached_features_file)
if args.local_rank == 0 and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
if output_examples:
return dataset, examples, features
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model checkpoints and predictions will be written.",
)
# Other parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
help="The input data dir. Should contain the .json files for the task."
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--train_file",
default=None,
type=str,
help="The input training file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--predict_file",
default=None,
type=str,
help="The input evaluation file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--version_2_with_negative",
action="store_true",
help="If true, the SQuAD examples contain some that do not have an answer.",
)
parser.add_argument(
"--null_score_diff_threshold",
type=float,
default=0.0,
help="If null_score - best_non_null is greater than the threshold predict null.",
)
parser.add_argument(
"--max_seq_length",
default=384,
type=int,
help="The maximum total input sequence length after WordPiece tokenization. Sequences "
"longer than this will be truncated, and sequences shorter than this will be padded.",
)
parser.add_argument(
"--doc_stride",
default=128,
type=int,
help="When splitting up a long document into chunks, how much stride to take between chunks.",
)
parser.add_argument(
"--max_query_length",
default=64,
type=int,
help="The maximum number of tokens for the question. Questions longer than this will "
"be truncated to this length.",
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Run evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
# Pruning parameters
parser.add_argument(
"--mask_scores_learning_rate",
default=1e-2,
type=float,
help="The Adam initial learning rate of the mask scores.",
)
parser.add_argument(
"--initial_threshold", default=1.0, type=float, help="Initial value of the threshold (for scheduling)."
)
parser.add_argument(
"--final_threshold", default=0.7, type=float, help="Final value of the threshold (for scheduling)."
)
parser.add_argument(
"--initial_warmup",
default=1,
type=int,
help="Run `initial_warmup` * `warmup_steps` steps of threshold warmup during which threshold stays"
"at its `initial_threshold` value (sparsity schedule).",
)
parser.add_argument(
"--final_warmup",
default=2,
type=int,
help="Run `final_warmup` * `warmup_steps` steps of threshold cool-down during which threshold stays"
"at its final_threshold value (sparsity schedule).",
)
parser.add_argument(
"--pruning_method",
default="topK",
type=str,
help="Pruning Method (l0 = L0 regularization, magnitude = Magnitude pruning, topK = Movement pruning, sigmoied_threshold = Soft movement pruning).",
)
parser.add_argument(
"--mask_init",
default="constant",
type=str,
help="Initialization method for the mask scores. Choices: constant, uniform, kaiming.",
)
parser.add_argument(
"--mask_scale", default=0.0, type=float, help="Initialization parameter for the chosen initialization method."
)
parser.add_argument("--regularization", default=None, help="Add L0 or L1 regularization to the mask scores.")
parser.add_argument(
"--final_lambda",
default=0.0,
type=float,
help="Regularization intensity (used in conjunction with `regularization`.",
)
parser.add_argument("--global_topk", action="store_true", help="Global TopK on the Scores.")
parser.add_argument(
"--global_topk_frequency_compute",
default=25,
type=int,
help="Frequency at which we compute the TopK global threshold.",
)
# Distillation parameters (optional)
parser.add_argument(
"--teacher_type",
default=None,
type=str,
help="Teacher type. Teacher tokenizer and student (model) tokenizer must output the same tokenization. Only for distillation.",
)
parser.add_argument(
"--teacher_name_or_path",
default=None,
type=str,
help="Path to the already SQuAD fine-tuned teacher model. Only for distillation.",
)
parser.add_argument(
"--alpha_ce", default=0.5, type=float, help="Cross entropy loss linear weight. Only for distillation."
)
parser.add_argument(
"--alpha_distil", default=0.5, type=float, help="Distillation loss linear weight. Only for distillation."
)
parser.add_argument(
"--temperature", default=2.0, type=float, help="Distillation temperature. Only for distillation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs",
default=3.0,
type=float,
help="Total number of training epochs to perform.",
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument(
"--n_best_size",
default=20,
type=int,
help="The total number of n-best predictions to generate in the nbest_predictions.json output file.",
)
parser.add_argument(
"--max_answer_length",
default=30,
type=int,
help="The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another.",
)
parser.add_argument(
"--verbose_logging",
action="store_true",
help="If true, all of the warnings related to data processing will be printed. "
"A number of warnings are expected for a normal SQuAD evaluation.",
)
parser.add_argument(
"--lang_id",
default=0,
type=int,
help="language id of input for language-specific xlm models (see tokenization_xlm.PRETRAINED_INIT_CONFIGURATION)",
)
parser.add_argument("--logging_steps", type=int, default=500, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=500, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help="For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html",
)
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--threads", type=int, default=1, help="multiple threads for converting example to features")
args = parser.parse_args()
# Regularization
if args.regularization == "null":
args.regularization = None
if args.doc_stride >= args.max_seq_length - args.max_query_length:
logger.warning(
"WARNING - You've set a doc stride which may be superior to the document length in some "
"examples. This could result in errors when building features from the examples. Please reduce the doc "
"stride or increase the maximum length to ensure the features are correctly built."
)
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of synchronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set seed
set_seed(args)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
cache_dir=args.cache_dir if args.cache_dir else None,
pruning_method=args.pruning_method,
mask_init=args.mask_init,
mask_scale=args.mask_scale,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.teacher_type is not None:
assert args.teacher_name_or_path is not None
assert args.alpha_distil > 0.0
assert args.alpha_distil + args.alpha_ce > 0.0
teacher_config_class, teacher_model_class, _ = MODEL_CLASSES[args.teacher_type]
teacher_config = teacher_config_class.from_pretrained(args.teacher_name_or_path)
teacher = teacher_model_class.from_pretrained(
args.teacher_name_or_path,
from_tf=False,
config=teacher_config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
teacher.to(args.device)
else:
teacher = None
if args.local_rank == 0:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Before we do anything with models, we want to ensure that we get fp16 execution of torch.einsum if args.fp16 is set.
# Otherwise it'll default to "promote" mode, and we'll get fp32 operations. Note that running `--fp16_opt_level="O2"` will
# remove the need for this code, but it is still valid.
if args.fp16:
try:
import apex
apex.amp.register_half_function(torch, "einsum")
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer, teacher=teacher)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Save the trained model and the tokenizer
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir) # , force_download=True)
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
model.to(args.device)
# Evaluation - we can ask to evaluate all the checkpoints (sub-directories) in a directory
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
if args.do_train:
logger.info("Loading checkpoints saved during training for evaluation")
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = list(
os.path.dirname(c)
for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
)
else:
logger.info("Loading checkpoint %s for evaluation", args.model_name_or_path)
checkpoints = [args.model_name_or_path]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
# Reload the model
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
model = model_class.from_pretrained(checkpoint) # , force_download=True)
model.to(args.device)
# Evaluate
result = evaluate(args, model, tokenizer, prefix=global_step)
result = dict((k + ("_{}".format(global_step) if global_step else ""), v) for k, v in result.items())
results.update(result)
logger.info("Results: {}".format(results))
predict_file = list(filter(None, args.predict_file.split("/"))).pop()
if not os.path.exists(os.path.join(args.output_dir, predict_file)):
os.makedirs(os.path.join(args.output_dir, predict_file))
output_eval_file = os.path.join(args.output_dir, predict_file, "eval_results.txt")
with open(output_eval_file, "w") as writer:
for key in sorted(results.keys()):
writer.write("%s = %s\n" % (key, str(results[key])))
return results
if __name__ == "__main__":
main()
| 47,575 | 41.214729 | 156 | py |
robust-transformers | robust-transformers-main/examples/research_projects/movement-pruning/emmental/modeling_bert_masked.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Masked Version of BERT. It replaces the `torch.nn.Linear` layers with
:class:`~emmental.MaskedLinear` and add an additional parameters in the forward pass to
compute the adaptive mask.
Built on top of `transformers.models.bert.modeling_bert`"""
import logging
import math
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from emmental import MaskedBertConfig
from emmental.modules import MaskedLinear
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.modeling_utils import PreTrainedModel, prune_linear_layer
from transformers.models.bert.modeling_bert import ACT2FN, load_tf_weights_in_bert
logger = logging.getLogger(__name__)
class BertEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=0)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if position_ids is None:
position_ids = torch.arange(seq_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).expand(input_shape)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
position_embeddings = self.position_embeddings(position_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + position_embeddings + token_type_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class BertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention "
"heads (%d)" % (config.hidden_size, config.num_attention_heads)
)
self.output_attentions = config.output_attentions
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = MaskedLinear(
config.hidden_size,
self.all_head_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.key = MaskedLinear(
config.hidden_size,
self.all_head_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.value = MaskedLinear(
config.hidden_size,
self.all_head_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
mixed_query_layer = self.query(hidden_states, threshold=threshold)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
if encoder_hidden_states is not None:
mixed_key_layer = self.key(encoder_hidden_states, threshold=threshold)
mixed_value_layer = self.value(encoder_hidden_states, threshold=threshold)
attention_mask = encoder_attention_mask
else:
mixed_key_layer = self.key(hidden_states, threshold=threshold)
mixed_value_layer = self.value(hidden_states, threshold=threshold)
query_layer = self.transpose_for_scores(mixed_query_layer)
key_layer = self.transpose_for_scores(mixed_key_layer)
value_layer = self.transpose_for_scores(mixed_value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if self.output_attentions else (context_layer,)
return outputs
class BertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = MaskedLinear(
config.hidden_size,
config.hidden_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor, threshold):
hidden_states = self.dense(hidden_states, threshold=threshold)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = BertSelfAttention(config)
self.output = BertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
mask = torch.ones(self.self.num_attention_heads, self.self.attention_head_size)
heads = set(heads) - self.pruned_heads # Convert to set and remove already pruned heads
for head in heads:
# Compute how many pruned heads are before the head and move the index accordingly
head = head - sum(1 if h < head else 0 for h in self.pruned_heads)
mask[head] = 0
mask = mask.view(-1).contiguous().eq(1)
index = torch.arange(len(mask))[mask].long()
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
threshold=threshold,
)
attention_output = self.output(self_outputs[0], hidden_states, threshold=threshold)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class BertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = MaskedLinear(
config.hidden_size,
config.intermediate_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states, threshold):
hidden_states = self.dense(hidden_states, threshold=threshold)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class BertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = MaskedLinear(
config.intermediate_size,
config.hidden_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor, threshold):
hidden_states = self.dense(hidden_states, threshold=threshold)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = BertAttention(config)
self.is_decoder = config.is_decoder
if self.is_decoder:
self.crossattention = BertAttention(config)
self.intermediate = BertIntermediate(config)
self.output = BertOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
self_attention_outputs = self.attention(hidden_states, attention_mask, head_mask, threshold=threshold)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
if self.is_decoder and encoder_hidden_states is not None:
cross_attention_outputs = self.crossattention(
attention_output, attention_mask, head_mask, encoder_hidden_states, encoder_attention_mask
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:] # add cross attentions if we output attention weights
intermediate_output = self.intermediate(attention_output, threshold=threshold)
layer_output = self.output(intermediate_output, attention_output, threshold=threshold)
outputs = (layer_output,) + outputs
return outputs
class BertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.layer = nn.ModuleList([BertLayer(config) for _ in range(config.num_hidden_layers)])
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
all_hidden_states = ()
all_attentions = ()
for i, layer_module in enumerate(self.layer):
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states,
attention_mask,
head_mask[i],
encoder_hidden_states,
encoder_attention_mask,
threshold=threshold,
)
hidden_states = layer_outputs[0]
if self.output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = (hidden_states,)
if self.output_hidden_states:
outputs = outputs + (all_hidden_states,)
if self.output_attentions:
outputs = outputs + (all_attentions,)
return outputs # last-layer hidden state, (all hidden states), (all attentions)
class BertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class MaskedBertPreTrainedModel(PreTrainedModel):
"""An abstract class to handle weights initialization and
a simple interface for downloading and loading pretrained models.
"""
config_class = MaskedBertConfig
load_tf_weights = load_tf_weights_in_bert
base_model_prefix = "bert"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Embedding)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
MASKED_BERT_START_DOCSTRING = r"""
This model is a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`_ sub-class.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general
usage and behavior.
Parameters:
config (:class:`~emmental.MaskedBertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the configuration.
Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model weights.
"""
MASKED_BERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`transformers.BertTokenizer`.
See :func:`transformers.PreTrainedTokenizer.encode` and
:func:`transformers.PreTrainedTokenizer.__call__` for details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices.
Mask values selected in ``[0, 1]``:
``1`` for tokens that are NOT MASKED, ``0`` for MASKED tokens.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Segment token indices to indicate first and second portions of the inputs.
Indices are selected in ``[0, 1]``: ``0`` corresponds to a `sentence A` token, ``1``
corresponds to a `sentence B` token
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings.
Selected in the range ``[0, config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules.
Mask values selected in ``[0, 1]``:
:obj:`1` indicates the head is **not masked**, :obj:`0` indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
encoder_hidden_states (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
if the model is configured as a decoder.
encoder_attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask
is used in the cross-attention if the model is configured as a decoder.
Mask values selected in ``[0, 1]``:
``1`` for tokens that are NOT MASKED, ``0`` for MASKED tokens.
"""
@add_start_docstrings(
"The bare Masked Bert Model transformer outputting raw hidden-states without any specific head on top.",
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertModel(MaskedBertPreTrainedModel):
"""
The `MaskedBertModel` class replicates the :class:`~transformers.BertModel` class
and adds specific inputs to compute the adaptive mask on the fly.
Note that we freeze the embeddings modules from their pre-trained values.
"""
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = BertEmbeddings(config)
self.embeddings.requires_grad_(requires_grad=False)
self.encoder = BertEncoder(config)
self.pooler = BertPooler(config)
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""Prunes heads of the model.
heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
See base class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
r"""
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
if attention_mask.dim() == 3:
extended_attention_mask = attention_mask[:, None, :, :]
elif attention_mask.dim() == 2:
# Provided a padding mask of dimensions [batch_size, seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder:
batch_size, seq_length = input_shape
seq_ids = torch.arange(seq_length, device=device)
causal_mask = seq_ids[None, None, :].repeat(batch_size, seq_length, 1) <= seq_ids[None, :, None]
causal_mask = causal_mask.to(
attention_mask.dtype
) # causal and attention masks must have same type with pytorch version < 1.3
extended_attention_mask = causal_mask[:, None, :, :] * attention_mask[:, None, None, :]
else:
extended_attention_mask = attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for input_ids (shape {}) or attention_mask (shape {})".format(
input_shape, attention_mask.shape
)
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = extended_attention_mask.to(dtype=next(self.parameters()).dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
if encoder_attention_mask.dim() == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
elif encoder_attention_mask.dim() == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for encoder_hidden_shape (shape {}) or encoder_attention_mask (shape {})".format(
encoder_hidden_shape, encoder_attention_mask.shape
)
)
encoder_extended_attention_mask = encoder_extended_attention_mask.to(
dtype=next(self.parameters()).dtype
) # fp16 compatibility
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
if head_mask.dim() == 1:
head_mask = head_mask.unsqueeze(0).unsqueeze(0).unsqueeze(-1).unsqueeze(-1)
head_mask = head_mask.expand(self.config.num_hidden_layers, -1, -1, -1, -1)
elif head_mask.dim() == 2:
head_mask = (
head_mask.unsqueeze(1).unsqueeze(-1).unsqueeze(-1)
) # We can specify head_mask for each layer
head_mask = head_mask.to(
dtype=next(self.parameters()).dtype
) # switch to float if need + fp16 compatibility
else:
head_mask = [None] * self.config.num_hidden_layers
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
threshold=threshold,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output)
outputs = (sequence_output, pooled_output,) + encoder_outputs[
1:
] # add hidden_states and attentions if they are here
return outputs # sequence_output, pooled_output, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model transformer with a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForSequenceClassification(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = MaskedBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
threshold=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
outputs = (loss,) + outputs
return outputs # (loss), logits, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model with a multiple choice classification head on top (a linear layer on top of
the pooled output and a softmax) e.g. for RocStories/SWAG tasks. """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForMultipleChoice(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bert = MaskedBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
threshold=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss.
Indices should be in ``[0, ..., num_choices]`` where `num_choices` is the size of the second dimension
of the input tensors. (see `input_ids` above)
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape `(1,)`, `optional`, returned when :obj:`labels` is provided):
Classification loss.
classification_scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_choices)`):
`num_choices` is the second dimension of the input tensors. (see `input_ids` above).
Classification scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
num_choices = input_ids.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1))
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
outputs = (reshaped_logits,) + outputs[2:] # add hidden states and attention if they are here
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
outputs = (loss,) + outputs
return outputs # (loss), reshaped_logits, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model with a token classification head on top (a linear layer on top of
the hidden-states output) e.g. for Named-Entity-Recognition (NER) tasks. """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForTokenClassification(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = MaskedBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
threshold=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss.
Indices should be in ``[0, ..., config.num_labels - 1]``.
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when ``labels`` is provided) :
Classification loss.
scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, config.num_labels)`)
Classification scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
if labels is not None:
loss_fct = CrossEntropyLoss()
# Only keep active parts of the loss
if attention_mask is not None:
active_loss = attention_mask.view(-1) == 1
active_logits = logits.view(-1, self.num_labels)
active_labels = torch.where(
active_loss, labels.view(-1), torch.tensor(loss_fct.ignore_index).type_as(labels)
)
loss = loss_fct(active_logits, active_labels)
else:
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
outputs = (loss,) + outputs
return outputs # (loss), scores, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`). """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForQuestionAnswering(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = MaskedBertModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
start_positions=None,
end_positions=None,
threshold=None,
):
r"""
start_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`).
Position outside of the sequence are not taken into account for computing the loss.
end_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`).
Position outside of the sequence are not taken into account for computing the loss.
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`labels` is provided):
Total span extraction loss is the sum of a Cross-Entropy for the start and end positions.
start_scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length,)`):
Span-start scores (before SoftMax).
end_scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length,)`):
Span-end scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
outputs = (
start_logits,
end_logits,
) + outputs[2:]
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions.clamp_(0, ignored_index)
end_positions.clamp_(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
outputs = (total_loss,) + outputs
return outputs # (loss), start_logits, end_logits, (hidden_states), (attentions)
| 47,084 | 45.161765 | 152 | py |
robust-transformers | robust-transformers-main/examples/research_projects/movement-pruning/emmental/__init__.py | # flake8: noqa
from .configuration_bert_masked import MaskedBertConfig
from .modeling_bert_masked import (
MaskedBertForMultipleChoice,
MaskedBertForQuestionAnswering,
MaskedBertForSequenceClassification,
MaskedBertForTokenClassification,
MaskedBertModel,
)
from .modules import *
| 301 | 26.454545 | 55 | py |
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