repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
toulbar2 | toulbar2-master/misc/script/wcsp2lp-support.py | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import copy
import os
import sys
import itertools
import numpy
assert len(sys.argv) == 3, "Please specify INPUT and OUTPUT filenames."
# does the WCSP have one or more constant terms
has_constant_term = False
# classe pour écriture à largeur de texte contrôlée
class Widt... | 9,939 | 31.913907 | 146 | py |
toulbar2 | toulbar2-master/validation/bilevel/bilevel_mibs2.py |
import pytoulbar2 as tb2
cfn = tb2.CFN(ubinit = 1000, verbose = 0)
cfn.NoPreprocessing()
cfn.Option.btdMode = 1
cfn.Option.hbfs = 0
# create restricted leader problem
cfn.Option.bilevel = 1
cfn.AddVariable('x0',range(2))
cfn.AddVariable('x1',range(2))
cfn.AddVariable('x2',range(2))
cfn.AddLinearConstraint([7,5,2],['... | 2,994 | 43.044118 | 181 | py |
toulbar2 | toulbar2-master/validation/bilevel/bilevel_mibs0.py |
import pytoulbar2 as tb2
cfn = tb2.CFN(ubinit = 1000, verbose = 0)
cfn.NoPreprocessing()
cfn.Option.btdMode = 1
cfn.Option.hbfs = 0
# create restricted leader problem
cfn.Option.bilevel = 1
cfn.AddVariable('x',range(9))
cfn.AddFunction(['x'],[-vx for vx in range(9)])
cfn.Option.initialLbBLP = cfn.Option.initialLbB... | 2,055 | 37.792453 | 211 | py |
toulbar2 | toulbar2-master/validation/bilevel/bilevel_mibs1.py |
import pytoulbar2 as tb2
cfn = tb2.CFN(ubinit = 1000, verbose = 0)
cfn.NoPreprocessing()
cfn.Option.btdMode = 1
cfn.Option.hbfs = 0
# create restricted leader problem
cfn.Option.bilevel = 1
cfn.AddVariable('C0',range(11))
cfn.AddFunction(['C0'],[-v for v in range(11)])
cfn.Option.initialLbBLP = cfn.Option.initialLb... | 2,196 | 40.45283 | 280 | py |
toulbar2 | toulbar2-master/validation/default/weightedcspconstraint.py | VERBOSE=0
PROBLEM1="../../validation/bilevel/bilevel1b.cfn"
PROBLEM2="../../validation/bilevel/bilevel2.cfn"
LB=11
UB=20
import pytoulbar2 as tb2
cfn1 = tb2.CFN(verbose = VERBOSE)
cfn1.Read(PROBLEM1)
cfn2 = tb2.CFN(verbose = VERBOSE)
cfn2.Read(PROBLEM2)
cfn1.AddWeightedCSPConstraint(cfn2, LB, UB, True)
cfn1.Solve(s... | 375 | 19.888889 | 65 | py |
toulbar2 | toulbar2-master/validation/default/clique.py |
import pytoulbar2 as tb2
m = tb2.CFN(1, verbose=0)
w=m.AddVariable('w', range(2))
x=m.AddVariable('x', range(2))
y=m.AddVariable('y', range(2))
z=m.AddVariable('z', range(2))
m.CFN.wcsp.postCliqueConstraint([x,y,z,w],'1 1 1 1 1 1 1 1 1')
for u in [w,x,y,z]:
for v in [w,x,y,z]:
if u<v:
m.AddFunction([u,v],[0, ... | 377 | 18.894737 | 62 | py |
toulbar2 | toulbar2-master/validation/default/sregular.py |
import pytoulbar2 as tb2
m = tb2.CFN(12, verbose=0)
v1=m.AddVariable('v1', range(2))
v2=m.AddVariable('v2', range(2))
v3=m.AddVariable('v3', range(2))
v4=m.AddVariable('v4', range(2))
m.AddFunction([v1], [2, 0])
m.AddFunction([v4], [0, 3])
m.CFN.wcsp.postWRegular([v1,v2,v3,v4],'var','DAG', 12, 2, [tb2.tb2.WeightedO... | 534 | 28.722222 | 202 | py |
ns_lattice | ns_lattice-master/ns_lattice/setup.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Jan 27, 2017
@author: Niels Lubbes
https://python-packaging.readthedocs.io/en/latest/minimal.html
https://pypi.python.org/pypi?%3Aaction=list_classifiers
'''
from setuptools import setup
setup(
nam... | 1,250 | 29.512195 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_class_ns_tools.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 13, 2017
@author: Niels Lubbes
'''
from ns_lattice.class_ns_tools import NSTools
class TestClassNSTools:
def test__p( self ):
NSTools.filter( None )
assert NSTools.p( 'Hello wor... | 1,654 | 28.035088 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_class_div.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 8, 2017
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_ZZ
from ns_lattice.sage_interface import sage_matrix
from ns_lattice.class_div import Div
from ns_lattice.class_ns_tools im... | 4,686 | 41.225225 | 104 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_class_dp_lattice.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Nov 7, 2017
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_QQ
from ns_lattice.sage_interface import sage_identity_matrix
from ns_lattice.sage_interface import sage_matrix
from ns_latt... | 11,122 | 31.054755 | 706 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_div_in_lattice.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 8, 2017
@author: Niels Lubbes
'''
from ns_lattice.class_ns_tools import NSTools
from ns_lattice.class_div import Div
from ns_lattice.div_in_lattice import get_divs
from ns_lattice.div_in_lattice import... | 5,065 | 32.773333 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_class_eta.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Jan 27, 2018
@author: Niels Lubbes
'''
from ns_lattice.class_eta import ETA
from ns_lattice.class_ns_tools import NSTools
class TestClassETA():
def test__update( self ):
eta = ETA( 10, 2 )
... | 592 | 21.807692 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_dp_root_basis.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 13, 2017
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_QQ
from ns_lattice.sage_interface import sage_identity_matrix
from ns_lattice.sage_interface import sage_Graph
from ns_latt... | 4,288 | 31.007463 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_ns_basis.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 9, 2017
@author: Niels Lubbes
'''
import sys
from ns_lattice.sage_interface import sage_identity_matrix
from ns_lattice.sage_interface import sage_matrix
from ns_lattice.sage_interface import sage_ZZ
f... | 5,021 | 29.071856 | 153 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_convert_to_tex.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 8, 2017
@author: Niels Lubbes
'''
from ns_lattice.class_ns_tools import NSTools
from ns_lattice.convert_to_tex import cls_to_tex
class TestConvertToTex:
def test__cls_to_tex( self ):
... | 543 | 16.548387 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/__init__.py | 0 | 0 | 0 | py | |
ns_lattice | ns_lattice-master/ns_lattice/src/tests/test_dp_involutions.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 8, 2017
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_vector
from ns_lattice.sage_interface import sage_matrix
from ns_lattice.sage_interface import sage_identity_matrix
from ns_l... | 6,780 | 37.310734 | 133 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/class_eta.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Jan 27, 2018
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_n
from ns_lattice.class_ns_tools import NSTools
import time
class ETA( object ):
'''
For estimating the time it... | 2,603 | 26.410526 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/dp_root_bases.py | '''
Created on Aug 11, 2016
@author: Niels
See [http://arxiv.org/abs/1302.6678] for more info.
Classification of root subsystems of root systems
of type either A1, A1+A2, A4, D5, E6, E7 or E8.
'''
import time
from ns_lattice.sage_interface import sage_VectorSpace
from ns_lattice.sage_interface import sage_vector
fro... | 13,321 | 30.56872 | 158 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/dp_involutions.py | '''
Created on Aug 11, 2016
@author: Niels Lubbes
Classification of unimodular involutions of Neron-Severi lattice
of weak del Pezzo surfaces.
'''
from ns_lattice.sage_interface import sage_ZZ
from ns_lattice.sage_interface import sage_QQ
from ns_lattice.sage_interface import sage_matrix
from ns_lattice.sage_interfa... | 4,093 | 28.035461 | 116 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/__main__.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Aug 11, 2016
@author: Niels Lubbes
'''
import sys
import os
from ns_lattice.sage_interface import sage_matrix
from ns_lattice.sage_interface import sage_ZZ
from ns_lattice.sage_interface import sage_ident... | 17,992 | 33.601923 | 140 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/convert_to_tex.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Dec 14, 2017
@author: Niels Lubbes
'''
from ns_lattice.class_div import Div
from ns_lattice.class_dp_lattice import DPLattice
from ns_lattice.class_ns_tools import NSTools
from ns_lattice.sage_interface ... | 7,948 | 32.682203 | 201 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/class_div.py | '''
Created on Aug 11, 2016
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_ZZ
from ns_lattice.sage_interface import sage_diagonal_matrix
from ns_lattice.sage_interface import sage_vector
class Div:
'''Element in Neron-Severi lattice.
The class represents a divisor class in the Nero... | 16,148 | 27.683837 | 122 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/class_dp_lattice.py | '''
Created on Aug 15, 2016
@author: Niels Lubbes
This module is for classifying real structures and singularities
of weak Del Pezzo surfaces of degree between 1 and 7.
'''
import time
from ns_lattice.sage_interface import sage_identity_matrix
from ns_lattice.sage_interface import sage_ZZ
from ns_lattice.sage_inter... | 47,232 | 34.674471 | 195 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/div_in_lattice.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Aug 11, 2016
@author: Niels Lubbes
Algorithm for computing elements in a unimodular lattice.
We use this algorithm in the context of Neron-Severi lattices
of weak del Pezzo surfaces.
See
Arxiv: "Compu... | 9,393 | 31.061433 | 233 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/ns_basis.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 9, 2017
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_identity_matrix
from ns_lattice.sage_interface import sage_matrix
from ns_lattice.sage_interface import sage_ZZ
from ns_lattic... | 8,302 | 30.214286 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/class_ns_tools.py | '''
Use of this source code is governed by a MIT-style license that can be found in the LICENSE file.
Created on Feb 7, 2017
@author: Niels Lubbes
'''
from ns_lattice.sage_interface import sage_load
from ns_lattice.sage_interface import sage_save
import inspect
import time
import sys
import os
class NSTools():
'... | 6,196 | 27.689815 | 97 | py |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/__init__.py | 1 | 0 | 0 | py | |
ns_lattice | ns_lattice-master/ns_lattice/src/ns_lattice/sage_interface.py | '''
Use of this source code is governed by a
MIT-style license that can be found in the
LICENSE file.
Created on Jul 12, 2017
@author: Niels Lubbes
Sage has a complicated import structure and it
is not possible to simply import each need
module. It seems that "from sage.all import *"
is the only option. Therefore... | 6,555 | 28.936073 | 115 | py |
MORSE | MORSE-master/Generate_Params_Par.py | #! /usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import os
import multiprocessing as mp
import traceback
import logging
import gc
import time
from argparse import ArgumentParser
import numpy
from matplotlib import pyplot
#from joblib import Parallel, delayed
from scipy.signal import argrelextrema
import mult... | 8,000 | 28.307692 | 134 | py |
MORSE | MORSE-master/constants.py | ### Constants used throughout my project code ###
c = 3e10
G = 6.67428e-8
Msun = 1.989e33
rho_0 = 10**14.3
rho_ns = 2.7e14
rho_1 = 1.85 * rho_ns
rho_2 = 2. * rho_1
#rho_2 = 1.8 * rho_1
rho_3 = 2. * rho_2
P_0 = 1.5281267425e+33
gamma_0 = 2.68019358431
dyncm2_to_MeVfm3 = 1./(1.6022e33)
gcm3_to_MeVfm3 = 1./(1.7827e12... | 346 | 18.277778 | 49 | py |
MORSE | MORSE-master/PosteriorProbRho.py | #! /usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import os
import multiprocessing as mp
import traceback
import logging
import gc
import numpy
from matplotlib import pyplot
from argparse import ArgumentParser
from scipy.interpolate import UnivariateSpline, RegularGridInterpolator
from scipy.integrate import ... | 7,431 | 31.596491 | 150 | py |
MORSE | MORSE-master/Plotting.py | import numpy
import pandas
from matplotlib import pyplot
from scipy.interpolate import griddata
from InputPosteriors import Pobs, find_CI_level
pyplot.rcParams['xtick.direction'] = 'in'
pyplot.rcParams['xtick.minor.visible'] = True
pyplot.rcParams['ytick.direction'] = 'in'
pyplot.rcParams['ytick.minor.visible'] = True... | 3,918 | 32.784483 | 108 | py |
MORSE | MORSE-master/Create_MRcurves_Par.py | #! /usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import os
import multiprocessing as mp
import traceback
import logging
import gc
import time
from constants import c, G, Msun, rho_0, rho_ns, rho_1, rho_2, rho_3, P_0, gamma_0, dyncm2_to_MeVfm3, gcm3_to_MeVfm3, oneoverfm_MeV
import numpy
from argparse import A... | 21,060 | 35.755672 | 139 | py |
MORSE | MORSE-master/InputPosteriors.py | import numpy
def Create_Input_Posterior(percent, masses, radii, rho):
Robs = radii
Mobs = masses
sigmaM = numpy.zeros(3)
sigmaR = numpy.zeros(3)
sigmaM[0] = percent[0]*Mobs[0]
sigmaR[0] = percent[0]*Robs[0]
sigmaM[1] = percent[1]*Mobs[1]
sigmaR[1] = percent[1]*Robs[1]
sigmaM[... | 1,586 | 27.339286 | 95 | py |
MORSE | MORSE-master/JacobianRho.py | import sys
import os
import multiprocessing as mp
import traceback
import logging
import gc
import time
from argparse import ArgumentParser
import numpy
import pandas
from matplotlib import pyplot
from scipy.interpolate import UnivariateSpline
def UniqueParams(Parameters):
df = pandas.DataFrame({'P1':Parameters[... | 6,006 | 27.334906 | 123 | py |
UEDGE | UEDGE-master/setup.py | #!/usr/bin/env python
# To use:
# python setup.py install
#
import sys
import os
import os.path
import string
import site
from Forthon.compilers import FCompiler
import getopt
import logging
version='8.0.4.1'
try:
os.environ['PATH'] += os.pathsep + site.USER_BASE + '/bin'
import setuptools
import di... | 6,228 | 30.780612 | 90 | py |
UEDGE | UEDGE-master/localrules.py | #rules for converting mppl to f90
# This is generic down to the UEDGE section
import copy
import os
def Use2use(s):
#Return s if this is a comment
if (not s[0].isspace()) and s[0] != "U":
return s
#Do a substitution if line contains "Use" and it is not
#part of a comment
if (s.find("Use")+1)... | 6,579 | 32.917526 | 97 | py |
UEDGE | UEDGE-master/pyexamples/d3dHsm/runcase.py | #-import uedge
from uedge import *
#-import hdf5 routines
from uedge.hdf5 import *
#-import graphics, math, etc.
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import numpy as np
import os
#-import some utilities for using OS
###execfile(os.path.join(os.environ['HOME'], 'utils/python/osfun.py... | 1,603 | 21.591549 | 70 | py |
UEDGE | UEDGE-master/pyexamples/d3dHsm/rd_d3dHsm_in.py | #
#
###########################################################################
# DESCRIPTION OF PROBLEM (d3dHsm) from FACETS test suite:
# DIII-D single-null geometry with 5 variables (ni,upi,te,ti,ng) and a
# (16+2)*(8+2)=18x10 [poloidal*radial] mesh yielding 900 variables.
# Solver used is Newton Krylov (svrpkg="nks... | 3,347 | 36.617978 | 80 | py |
UEDGE | UEDGE-master/pyexamples/box2/plotcontour.py | import matplotlib
import matplotlib.gridspec as gridspec
gs=gridspec.GridSpec(2, 2)
plt.figure(10)
plt.subplot(gs[0,0])
CS = plt.contour(com.zm[:,:,0], com.rm[:,:,0], bbb.te/ev)
plt.clabel(CS, inline=1, fontsize=10)
params = {'mathtext.default': 'regular' }
plt.rcParams.update(params)
plt.title('T$\mathregul... | 987 | 23.097561 | 66 | py |
UEDGE | UEDGE-master/pyexamples/box2/runcase.py | #import uedge
from uedge import *
#-import hdf5 routines
from uedge.hdf5 import *
#-import graphics, math, etc.
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import numpy as np
import os
#-import some utilities for using OS
###execfile(os.path.join(os.environ['HOME'], 'utils/python/osfun.py'... | 2,306 | 23.284211 | 76 | py |
UEDGE | UEDGE-master/pyexamples/box2/box2_in.py | ###########################################################################
# DESCRIPTION OF PROBLEM (box2):
#
# This is a Python version of the box case from Andreas Holm
###########################################################################
#-Geometry
bbb.mhdgeo=-1 #-set cartesian geometry
bbb.isfixlb=2 #left ... | 4,169 | 27.758621 | 75 | py |
UEDGE | UEDGE-master/pyscripts/paws.py | def paws():
programPause = raw_input("Press the <ENTER> key to continue...")
| 81 | 26.333333 | 68 | py |
UEDGE | UEDGE-master/pyscripts/uedge_lists.py | """
This module uses some of the Forthon methods to provide routines for
listing and searching the Uedge compiled packages.
"""
import uedge
import re
packages = [uedge.com,uedge.aph,uedge.api,uedge.bbb,uedge.flx,uedge.grd,uedge.svr,uedge.wdf,uedge.ncl]
def packagename2object(package):
for p in packages:... | 4,004 | 30.289063 | 103 | py |
UEDGE | UEDGE-master/pyscripts/osfun.py | def date():
os.system("date")
def ls(opts=""):
os.system("ls " + opts)
def more(fname):
os.system("more " + fname)
def pwd():
os.system("pwd")
def cp(opts=""):
os.system("cp " + opts)
def mv(opts=""):
os.system("mv " + opts)
| 254 | 13.166667 | 30 | py |
UEDGE | UEDGE-master/pyscripts/convert1.py | #!/usr/bin/env python
#
# $Id: convert1.py,v 7.1 2019/11/01 22:38:19 meyer8 Exp $
#
# To try solving linear critical gradient
import sys
import os
import getopt
import string
from . import convert
from .convert import *
# define the mppl to f90 class
class M2F(generic):
suffixin = "m"
suffixout = "F"
subrules =... | 1,164 | 17.492063 | 62 | py |
UEDGE | UEDGE-master/pyscripts/bas2py_rules.py | from uedge import *
import uedge.uedge_lists as ul
subrules = [
['\(','['],
['\)',']'],
[';','\n'],
['^!','#!'],
['^ *',''],
['^\t*',''],
[r'\ballocate\b','bbb.allocate()'],
[r'\bexmain\b','bbb.exmain()'],
[r'\bexponseed\b','grd.exponseed()'],
]
warnrules = []
def raw_string(s):
s = s.... | 878 | 25.636364 | 82 | py |
UEDGE | UEDGE-master/pyscripts/rdinitdt.py | # Setup file to run time-dependently using dtreal
# Change dtreal for starting dt and savefname to change pfb file name
# Once variables are set, read rdrundt to execute a time-dependent run
from uedge import *
i_stor = 0
nfe_tot = 0
savefn = "savedt.hdf5" # name of hdf5 savefile written every timestep
bbb.rdtphidtr... | 2,050 | 52.973684 | 76 | py |
UEDGE | UEDGE-master/pyscripts/ruthere.py | from numpy import *
import time
import signal
import sys
#############################################################################
# From Dave Grote:
# --- Setup signal handler to capture Control-C
# --- To use, first call arminterrupt(). Then at the place where the interrupt
# --- is allowed, call ruthere(). Thi... | 2,199 | 31.835821 | 82 | py |
UEDGE | UEDGE-master/pyscripts/__version__.py | __version__ = '8.0.0'
| 22 | 10.5 | 21 | py |
UEDGE | UEDGE-master/pyscripts/checkver.py |
import json
pkg = 'uedge'
try:
import importlib.metadata
thisver = importlib.metadata.version(pkg)
except:
import pkg_resources
thisver = pkg_resources.get_distribution(pkg).version
try:
import urllib.request
contents = urllib.request.urlopen('https://pypi.org/pypi/'+pkg+'/json').read()
data = ... | 928 | 24.108108 | 85 | py |
UEDGE | UEDGE-master/pyscripts/uedge.py | try:
import IPython
from IPython.terminal.prompts import Prompts,Token
from IPython.terminal.embed import InteractiveShellEmbed
except:
pass
try:
from traitlets.config.loader import Config
except:
pass
import sys,os,__main__
import numpy as np
from numpy import array,tanh,exp,arange
ArrayType = np.... | 3,031 | 23.650407 | 78 | py |
UEDGE | UEDGE-master/pyscripts/uexec.py |
import sys
try:
from importlib import reload,import_module
except:
from importlib import import_module
import builtins
def uexec(mname,returns=globals()):
if mname in sys.modules:
_m = reload(sys.modules[mname])
else:
_m = import_module(mname)
# is there an __all__? if so res... | 652 | 20.064516 | 65 | py |
UEDGE | UEDGE-master/pyscripts/uedgeplots.py | import numpy as np
import matplotlib.pyplot as plt
import matplotlib.cm as cm
import matplotlib.axes as ax
import sys
from matplotlib.collections import PolyCollection
from matplotlib.colors import LinearSegmentedColormap
from matplotlib import rcdefaults
from matplotlib import interactive
from uedge import *
from nump... | 14,603 | 33.524823 | 135 | py |
UEDGE | UEDGE-master/pyscripts/rundt.py | # Holm10 Nov 5 2019, based on rdcontdt.py
# 191121 - Created hdf5-routines to read and save time-dependent data
# Writes and reads dictionary with multi-dimensional arrays
# containing all restore-parameters.
# 230210 - Updated old rundt function to RunData class, modularizing
# all functi... | 30,206 | 40.83795 | 81 | py |
UEDGE | UEDGE-master/pyscripts/hdf5.py | import numpy as np
import h5py
import uedge
try:
import __version__ as pyv
pyver = pyv.__version__
except:
pyver = uedge.__version__
from .uedge import bbb
from .uedge import com
from .uedge_lists import *
import time
from Forthon import packageobject
def hdf5_restore(file):
"""
Read a hdf5 fi... | 11,545 | 33.363095 | 90 | py |
UEDGE | UEDGE-master/pyscripts/filelists.py | # Methods to create a list of files in a directory, and a sub-list containing sspecified suffixes.
import os
import string
def filelist(path):
return os.listdir(path)
def filesublist(path,suffix):
sublist = []
biglist = filelist(path)
for filename in biglist:
filesplit = filename.split(".")
... | 404 | 21.5 | 98 | py |
UEDGE | UEDGE-master/pyscripts/convert.py | # A Python translator that will convert files following a set
# of file-suffix-specific substitution rules
# Written by Ron Cohen, February 2007. Last revision March 15, 2007.
# import utilities to create filtered list of files
from filelists import *
import os
import filecmp
"""
create a list of classes to enstant... | 11,542 | 37.734899 | 92 | py |
UEDGE | UEDGE-master/pyscripts/double.py | from uedge import *
def uedouble():
com.nxleg=2*com.nxleg
com.nxcore=2*com.nxcore
com.nycore=2*com.nycore
com.nysol=2*com.nysol
if com.nxomit > 0:
if com.geometry=="dnbot":
com.nxomit = com.nxleg[0,0]+com.nxcore[0,0] + 2*com.nxxptxx + 1
else:
com.nxomit=2*(co... | 739 | 28.6 | 103 | py |
UEDGE | UEDGE-master/pyscripts/__init__.py | from .uedge import *
from os import path
from pathlib import Path
try:
from uedge.__version__ import __version__
from uedge.__src__ import __src__
import uedge.checkver
except:
try:
from __version__ import __version__
from __src__ import __src__
import checkver
except:
... | 805 | 24.1875 | 54 | py |
UEDGE | UEDGE-master/pyscripts/__src__.py | __src__ = '/Users/meyer8/gitstuff/UEDGE'
| 41 | 20 | 40 | py |
UEDGE | UEDGE-master/pyscripts/cdf4.py |
import numpy as np
import netCDF4 as nc
from .uedge import bbb
def cdf4_restore(file):
"""
Read a cdf4 file previously written from Uedge. This reads the file and puts
the 6 standard variables into the correct format.
"""
try:
cf = nc.Dataset(file)
except:
print("Coul... | 2,293 | 22.649485 | 84 | py |
UEDGE | UEDGE-master/pyscripts/sources.py |
#
# Bill Meyer - 7/24/2019
# meyer8@llnl.gov
#
#
from __future__ import print_function
import sys
def sources():
"""
This routine simply dumps all the modules as a sorted list along
with the "__file__" attribute. Prints "unknown" for those that don't
have this attribute. This is just for ... | 670 | 20.645161 | 75 | py |
UEDGE | UEDGE-master/pyscripts/pdb2h5.py | #!/usr/bin/env python
# @description This script will convert a pdb data file into an hdf5
# data file
#
# @keywords Py-UEDGE
#
# @contact John Cary
#
# @version $id: $
# import sys for system commands
import sys, os
# Import uefacets for interface convenience
from . import uefacets
# import... | 1,094 | 16.380952 | 68 | py |
UEDGE | UEDGE-master/pyscripts/rdcontdt.py | # This file runs a time-dependent case using dtreal. First, obtain a converged
# solution for a (usually small) dtreal; xuedge must report iterm=1 at the end.
# Then adjust control parameters in rdinitdt; read this file, which reads rdinitdt.
# If a mistake is made, to restart this file without a Jacobian evaluation,
... | 10,702 | 41.472222 | 88 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case3/rd_forthon_case3.py | #Typical mesh (nx=64, ny=32) for DIII-D MHD equilibrium
#Uses inertial neutrals, so six variables (ni,upi,Te,Ti,ng,upg)
#
##package flx;package grd;package bbb
# Initialize pyuedge
from uedge import *
# Set the geometry
bbb.mhdgeo = 1 #use MHD equilibrium
os.system('rm -f aeqdsk neqdsk') #change names of MHD eqil.... | 3,833 | 34.831776 | 74 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case2/rd_forthon_case2.py | #Coarse mesh (nx=16, ny=8) for DIII-D MHD equilibrium
#Uses diffusive neutrals, so five variables (ni,upi,Te,Ti,ng)
#
##package flx;package grd;package bbb # Initialize pyuedge
from uedge import *
#from uefacets import *
from uedge.pdb_restore import *
from uedge.hdf5 import *
#bbb.uedge_petscInit()
# Set the geometr... | 3,496 | 36.202128 | 74 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case6/rdtimedpd_1.py | #Coarse mesh (nx=16, ny=8) for DIII-D MHD equilibrium
#Uses diffusive neutrals, so five variables (ni,upi,Te,Ti,ng)
#
##package flx;package grd;package bbb
# Initialize pyuedge
from uedge import *
# Set the geometry
bbb.mhdgeo = 1 #use MHD equilibrium
os.system('rm -f aeqdsk neqdsk') #change names of MHD eqil. fil... | 2,813 | 35.545455 | 77 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case6/rdtimedpd_2.py | #Coarse mesh (nx=16, ny=8) for DIII-D MHD equilibrium
#Uses diffusive neutrals, so five variables (ni,upi,Te,Ti,ng)
#
##package flx;package grd;package bbb
# Initialize pyuedge
from uedge import *
# Set the geometry
bbb.mhdgeo = 1 #use MHD equilibrium
os.system('rm -f aeqdsk neqdsk') #change names of MHD eqil. fil... | 2,827 | 35.25641 | 77 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case5/plate.iter-feat.py | # define divertor plate for ITER-FEAT
# derived from equilibrium from Kukushkin Jan 2002
###integer oldecho=echo
###echo=no
# for inboard half of mesh:
grd.nplate1=15
grd.gchange("Mmod",0)
grd.rplate1=[\
3.96500E+00, 4.06360E+00, 4.29140E+00, 4.44480E+00, 4.48730E+00, \
4.40860E+00, 4.23980E+00, 4.07090E+00, 4.341... | 1,132 | 31.371429 | 68 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case5/rd_forthon_case5.py | ###character*6 probname="itfa40"
#Case of full toroidal equilibrium for ITER-FEAT with multi-species Carbon
#
####package flx;package grd;package bbb
# Initial pyuedge
from uedge import *
from pdb_restore import *
bbb.mhdgeo=1
bbb.isfixlb=0
bbb.isfixrb=0
os.system('rm -f aeqdsk neqdsk')
os.system('cp aeq_iter-feat ... | 7,524 | 34.163551 | 92 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case1/rd_forthon_case1.py | # This input file sets the parameters for the parallel test case
#
from uedge import *
# flags also set in the workstation version.
bbb.mhdgeo=-1
bbb.isnion=1
bbb.isupon=1
bbb.isteon=1
bbb.istion=1
bbb.isngon=0
bbb.svrpkg="vodpk"
bbb.premeth="ilut"
bbb.epscon1=1.e-2
bbb.ireorder=0
bbb.ncore=2.e19
bbb.tcoree=100
bbb.tc... | 773 | 14.795918 | 64 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case4/plate.iter-feat.py | # define divertor plate for ITER-FEAT
# derived from equilibrium from Kukushkin Jan 2002
###integer oldecho=echo
###echo=no
# for inboard half of mesh:
grd.nplate1=15
grd.gchange("Mmod",0)
grd.rplate1=[\
3.96500E+00, 4.06360E+00, 4.29140E+00, 4.44480E+00, 4.48730E+00, \
4.40860E+00, 4.23980E+00, 4.07090E+00, 4.341... | 1,132 | 31.371429 | 68 | py |
UEDGE | UEDGE-master/test/Forthon_cases/Forthon_case4/rd_forthon_case4.py | ###character*6 probname="itfa40"
#Case of full toroidal equilibrium for ITER-FEAT
#
####package flx;package grd;package bbb
# Initialize pyuedge
from uedge import *
bbb.mhdgeo=1
bbb.isfixlb=0
bbb.isfixrb=0
os.system('rm -f aeqdsk neqdsk')
os.system('cp aeq_iter-feat aeqdsk')
os.system('cp geq_iter-feat neqdsk')
###... | 4,740 | 28.08589 | 92 | py |
UEDGE | UEDGE-master/test/facets/example.py | # This is a simple example exercising the methods in uefacets.py
from uefacets import *
from Numeric import *
print "Creating UEDGE instance"
ue = Uedge()
print "Reading input file 'testin.py' which is in the working directory"
print "(Note: alternatively give the full path)"
ue.ReadParams("testin.py")
print "Set up M... | 1,598 | 31.632653 | 81 | py |
UEDGE | UEDGE-master/test/facets/testin.py | #Coarse mesh (nx=16, ny=8) for DIII-D MHD equilibrium
#Uses diffusive neutrals, so five variables (ni,upi,Te,Ti,ng)
#
##package flx;package grd;package bbb
# Initialize pyuedge
from uedge import *
# Set the geometry
bbb.mhdgeo = 1 #use MHD equilibrium
os.system('rm -f aeqdsk neqdsk') #change names of MHD eqil. fil... | 3,181 | 35.574713 | 74 | py |
UEDGE | UEDGE-master/pytests/test_template.py | import unittest
import os
import numpy as np
import sys,getopt
def prhelp():
print("""
Usage: python test_slab.py [-r|--ref] [-h] or
pytest --forked test_slab.py
-r|--ref to produce reference files for future test runs
""")
#
# Note the numbering of the tests. P... | 1,282 | 18.439394 | 72 | py |
UEDGE | UEDGE-master/pytests/testscripts/rdinitdt.py | # Setup file to run time-dependently using dtreal
# Change dtreal for starting dt and savefname to change pfb file name
# Once variables are set, read rdrundt to execute a time-dependent run
# IMPORT UEDGE (needed to define group name bbb)
from uedge import *
i_stor = 0
nfe_tot = 0
savefn = "savedt.hdf5" # name of h... | 2,100 | 51.525 | 76 | py |
UEDGE | UEDGE-master/pytests/testscripts/uetests.py | import unittest
import os
import numpy as np
import sys,getopt
import uuid
from importlib import import_module as im
from multiprocessing import Process
def saverefs(filename):
import uedge as ue
import uedge.hdf5 as h5
fnrm = ue.bbb.get_fnrm(ue.bbb.dtreal)
nfe = ue.bbb.nfe[0][0]
sclyl = ue.bbb.y... | 4,934 | 24.050761 | 114 | py |
UEDGE | UEDGE-master/pytests/testscripts/rdcontdt.py | # This file runs a time-dependent case using dtreal. First, obtain a converged
# solution for a (usually small) dtreal; xuedge must report iterm=1 at the end.
# Then adjust control parameters in rdinitdt; read this file, which reads rdinitdt.
# If a mistake is made, to restart this file without a Jacobian evaluation,
... | 9,290 | 41.040724 | 88 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D_only/j.py | import uedge
import rd_d3dHsm_in
import uedge
uedge.bbb.exmain()
import uedge.uedgeplots as up
up.plotmesh()
| 110 | 12.875 | 29 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D_only/rd_d3dHsm_in.py | #
#
###########################################################################
# DESCRIPTION OF PROBLEM (d3dHsm) from FACETS test suite:
# DIII-D single-null geometry with 5 variables (ni,upi,te,ti,ng) and a
# (16+2)*(8+2)=18x10 [poloidal*radial] mesh yielding 900 variables.
# Solver used is Newton Krylov (svrpkg="nks... | 2,997 | 41.828571 | 81 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D_only/test_d3d_snull_D_only.py | import unittest
import os
import numpy as np
import sys,getopt
from multiprocessing import Process
thisfile=os.path.realpath(__file__)
thispath=os.path.dirname(thisfile)
sys.path.insert(0,thispath)
sys.path.insert(0,os.path.dirname(os.path.dirname(thispath))+'/testscripts')
import uetests as uet
ftol = 1.e-9
name = '... | 2,339 | 25.292135 | 92 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D+C_orthog/test_d3d_snull_D+C_orthog.py | import unittest
import os
import numpy as np
import sys,getopt
from multiprocessing import Process
thisfile=os.path.realpath(__file__)
thispath=os.path.dirname(thisfile)
sys.path.insert(0,thispath)
sys.path.insert(0,os.path.dirname(os.path.dirname(thispath))+'/testscripts')
import uetests as uet
ftol = 1.e-9
name = '... | 2,355 | 25.47191 | 92 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D+C_orthog/rd_d3dHmsCog_strahl_Rp95.py | #
#
###########################################################################
# DESCRIPTION OF PROBLEM (d3dHmsCnog) using Strahl imp data; from FACETS :
# DIII-D single-null geometry with 6 hydrogen variables (ni,ng,upi,upg,te,ti)
# and 7 carbon variables (six charge-state densities ni and one ng) on a
# (16+2)*(8+2... | 7,614 | 32.995536 | 77 | py |
UEDGE | UEDGE-master/pytests/fast_tests/Slab_geometry/test_sgeom.py | import unittest
import os
import numpy as np
import sys,getopt
from multiprocessing import Process
thisfile=os.path.realpath(__file__)
thispath=os.path.dirname(thisfile)
sys.path.insert(0,thispath)
sys.path.insert(0,os.path.dirname(os.path.dirname(thispath))+'/testscripts')
import uetests as uet
ftol = 2.e-9
def prh... | 2,382 | 26.079545 | 103 | py |
UEDGE | UEDGE-master/pytests/fast_tests/Slab_geometry/rd_slabH_in_w_h5.py | #
#
###########################################################################
# DESCRIPTION OF PROBLEM (slabH):
# Slab model with 4 hydrogen variables (ni,upi,te,ti) and a (6+2)*(10+2)
# = 8x12 [poloidal*radial] mesh yielding 384 variables. The +2 in the mesh
# size description arises from one guard-cell at each ... | 1,982 | 26.929577 | 79 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D+C_nonorthog/plate_d3d_2.py | # Set params for inner (1) and outer (2) plate line-segments
from uedge import * #needed to define variables within this file
grd.nplate1 = 5
grd.gchange("Mmod",0)
grd.rplate1=[\
1.600E+00, 1.27300E+00,
1.15310E+00, 1.01600E+00, 1.01600E+00]
grd.zplate1=[\
2.34100E-01, 2.34100E-01,
2.34100E-01, 3.... | 712 | 25.407407 | 66 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D+C_nonorthog/test_d3d_snull_D+C_nonorthog.py | import unittest
import os
import numpy as np
import sys,getopt
from multiprocessing import Process
thisfile=os.path.realpath(__file__)
thispath=os.path.dirname(thisfile)
sys.path.insert(0,thispath)
sys.path.insert(0,os.path.dirname(os.path.dirname(thispath))+'/testscripts')
import uetests as uet
ftol = 1.e-9
name = '... | 2,359 | 25.516854 | 92 | py |
UEDGE | UEDGE-master/pytests/fast_tests/d3d_snull_D+C_nonorthog/rd_d3dHmsCnog_strahl_Rp95.py | #
#
###########################################################################
# DESCRIPTION OF PROBLEM (d3dHmsCnog) from FACETS test suite:
# DIII-D single-null geometry with 6 hydrogen variables (ni,ng,upi,upg,te,ti)
# and 7 carbon variables (six charge-state densities ni and one ng) on a
# (16+2)*(8+2)=18x10 [polo... | 7,525 | 33.054299 | 77 | py |
UEDGE | UEDGE-master/jupyter/case_setup.py | #Coarse mesh [com.nx=8, com.ny=4] for DIII-D MHD equilibrium
#Uses diffusive neutrals, so five variables [bbb.ni,bbb.upi,Te,Ti,bbb.ng]
#
import sys,os
from uedge import *
# Set the com.geometry
bbb.mhdgeo = 1 #use MHD equilibrium
#com.rm -flx.f aeqdsk neqdsk #change names of MHD eqil. files
flx.psi0min1 = 0.98 #n... | 4,590 | 38.239316 | 79 | py |
StyleFusion | StyleFusion-master/src/main.py | from shared import *
from tf_lib import *
from dataset import *
from model import *
#from dialog_gui import *
from classifier import load_classifier
"""
AUTHOR: Xiang Gao (xiag@microsoft.com) at Microsoft Research
"""
def run_master(mode, args):
if mode not in ['train','continue'] and args.restore != '':
aa = ar... | 7,523 | 28.73913 | 137 | py |
StyleFusion | StyleFusion-master/src/decode.py | from shared import *
from nltk.translate.bleu_score import SmoothingFunction
"""
AUTHOR:
Sean Xiang Gao (xiag@microsoft.com) at Microsoft Research
"""
class Decoder:
def __init__(self, dataset, model, decoder_depth, latent_dim, allowed_words=None):
self.dataset = dataset
self.model = model
self.decoder_depth ... | 11,359 | 29.455764 | 150 | py |
StyleFusion | StyleFusion-master/src/vis.py | from shared import *
from tf_lib import *
from main import run_master, get_model_fld
from scipy.optimize import fmin_powell as fmin
from mpl_toolkits.mplot3d import Axes3D
from sklearn import manifold
import scipy
"""
AUTHOR:
Sean Xiang Gao (xiag@microsoft.com) at Microsoft Research
"""
def dist_mat(coord):
n ... | 9,316 | 25.850144 | 109 | py |
StyleFusion | StyleFusion-master/src/model.py | from shared import *
from tf_lib import *
from dataset import *
from decode import *
from evaluate import *
"""
AUTHOR: Xiang Gao (xiag@microsoft.com) at Microsoft Research
"""
class ModelBase:
def __init__(self):
self.fld = None # str
self.n_trained = None # int
self.max_n_trained = None # int
self.d... | 24,831 | 28.632458 | 127 | py |
StyleFusion | StyleFusion-master/src/tf_lib.py |
from keras.models import Model, load_model, model_from_yaml
from keras.layers import Input, GRU, Dense, Embedding, Dropout, Concatenate, Lambda, Add, Subtract, Multiply, GaussianNoise
from keras.utils import plot_model
from keras.callbacks import ModelCheckpoint
from keras.optimizers import Adam, RMSprop
from keras.ca... | 455 | 37 | 123 | py |
StyleFusion | StyleFusion-master/src/classifier.py | from shared import *
from tf_lib import *
import json
from dataset import load_vocab
from sklearn import linear_model
import pickle
"""
AUTHOR:
Sean Xiang Gao (xiag@microsoft.com) at Microsoft Research
"""
class ClassifierNeural():
def __init__(self, fld):
params = json.load(open(fld + '/args.json'))
if params... | 10,493 | 27.594005 | 114 | py |
StyleFusion | StyleFusion-master/src/dataset.py | from shared import *
"""
AUTHOR:
Sean Xiang Gao (xiag@microsoft.com) at Microsoft Research
"""
def load_vocab(path):
with io.open(path, encoding='utf-8') as f:
lines = f.readlines()
index2token = dict()
token2index = dict()
for i, line in enumerate(lines):
token = line.strip('\n').strip()
index2token[i +... | 9,117 | 26.299401 | 97 | py |
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