repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1 value |
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transformers | transformers-main/src/transformers/models/speecht5/processing_speecht5.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Speech processor class for SpeechT5."""
from ...processing_utils import ProcessorMixin
class SpeechT5Processor(ProcessorMixin):
r"""
Constructs a SpeechT5 processor which wraps a feature extractor and a tokenizer into a single processor.
[`SpeechT5Processor`] offers all the functionalities of [`SpeechT5FeatureExtractor`] and [`SpeechT5Tokenizer`]. See
the docstring of [`~SpeechT5Processor.__call__`] and [`~SpeechT5Processor.decode`] for more information.
Args:
feature_extractor (`SpeechT5FeatureExtractor`):
An instance of [`SpeechT5FeatureExtractor`]. The feature extractor is a required input.
tokenizer (`SpeechT5Tokenizer`):
An instance of [`SpeechT5Tokenizer`]. The tokenizer is a required input.
"""
feature_extractor_class = "SpeechT5FeatureExtractor"
tokenizer_class = "SpeechT5Tokenizer"
def __init__(self, feature_extractor, tokenizer):
super().__init__(feature_extractor, tokenizer)
def __call__(self, *args, **kwargs):
"""
Processes audio and text input, as well as audio and text targets.
You can process audio by using the argument `audio`, or process audio targets by using the argument
`audio_target`. This forwards the arguments to SpeechT5FeatureExtractor's
[`~SpeechT5FeatureExtractor.__call__`].
You can process text by using the argument `text`, or process text labels by using the argument `text_target`.
This forwards the arguments to SpeechT5Tokenizer's [`~SpeechT5Tokenizer.__call__`].
Valid input combinations are:
- `text` only
- `audio` only
- `text_target` only
- `audio_target` only
- `text` and `audio_target`
- `audio` and `audio_target`
- `text` and `text_target`
- `audio` and `text_target`
Please refer to the docstring of the above two methods for more information.
"""
audio = kwargs.pop("audio", None)
text = kwargs.pop("text", None)
text_target = kwargs.pop("text_target", None)
audio_target = kwargs.pop("audio_target", None)
sampling_rate = kwargs.pop("sampling_rate", None)
if audio is not None and text is not None:
raise ValueError(
"Cannot process both `audio` and `text` inputs. Did you mean `audio_target` or `text_target`?"
)
if audio_target is not None and text_target is not None:
raise ValueError(
"Cannot process both `audio_target` and `text_target` inputs. Did you mean `audio` or `text`?"
)
if audio is None and audio_target is None and text is None and text_target is None:
raise ValueError(
"You need to specify either an `audio`, `audio_target`, `text`, or `text_target` input to process."
)
if audio is not None:
inputs = self.feature_extractor(audio, *args, sampling_rate=sampling_rate, **kwargs)
elif text is not None:
inputs = self.tokenizer(text, **kwargs)
else:
inputs = None
if audio_target is not None:
targets = self.feature_extractor(audio_target=audio_target, *args, sampling_rate=sampling_rate, **kwargs)
labels = targets["input_values"]
elif text_target is not None:
targets = self.tokenizer(text_target, **kwargs)
labels = targets["input_ids"]
else:
targets = None
if inputs is None:
return targets
if targets is not None:
inputs["labels"] = labels
decoder_attention_mask = targets.get("attention_mask")
if decoder_attention_mask is not None:
inputs["decoder_attention_mask"] = decoder_attention_mask
return inputs
def pad(self, *args, **kwargs):
"""
Collates the audio and text inputs, as well as their targets, into a padded batch.
Audio inputs are padded by SpeechT5FeatureExtractor's [`~SpeechT5FeatureExtractor.pad`]. Text inputs are padded
by SpeechT5Tokenizer's [`~SpeechT5Tokenizer.pad`].
Valid input combinations are:
- `input_ids` only
- `input_values` only
- `labels` only, either log-mel spectrograms or text tokens
- `input_ids` and log-mel spectrogram `labels`
- `input_values` and text `labels`
Please refer to the docstring of the above two methods for more information.
"""
input_values = kwargs.pop("input_values", None)
input_ids = kwargs.pop("input_ids", None)
labels = kwargs.pop("labels", None)
if input_values is not None and input_ids is not None:
raise ValueError("Cannot process both `input_values` and `input_ids` inputs.")
if input_values is None and input_ids is None and labels is None:
raise ValueError(
"You need to specify either an `input_values`, `input_ids`, or `labels` input to be padded."
)
if input_values is not None:
inputs = self.feature_extractor.pad(input_values, *args, **kwargs)
elif input_ids is not None:
inputs = self.tokenizer.pad(input_ids, **kwargs)
else:
inputs = None
if labels is not None:
if "input_ids" in labels or (isinstance(labels, list) and "input_ids" in labels[0]):
targets = self.tokenizer.pad(labels, **kwargs)
labels = targets["input_ids"]
else:
feature_size_hack = self.feature_extractor.feature_size
self.feature_extractor.feature_size = self.feature_extractor.num_mel_bins
targets = self.feature_extractor.pad(labels, *args, **kwargs)
self.feature_extractor.feature_size = feature_size_hack
labels = targets["input_values"]
else:
targets = None
if inputs is None:
return targets
if targets is not None:
inputs["labels"] = labels
decoder_attention_mask = targets.get("attention_mask")
if decoder_attention_mask is not None:
inputs["decoder_attention_mask"] = decoder_attention_mask
return inputs
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to SpeechT5Tokenizer's [`~SpeechT5Tokenizer.batch_decode`]. Please refer
to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to SpeechT5Tokenizer's [`~SpeechT5Tokenizer.decode`]. Please refer to
the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
| 7,561 | 40.322404 | 119 | py |
transformers | transformers-main/src/transformers/models/speecht5/convert_speecht5_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert SpeechT5 checkpoint."""
import argparse
import torch
from transformers import (
SpeechT5Config,
SpeechT5FeatureExtractor,
SpeechT5ForSpeechToSpeech,
SpeechT5ForSpeechToText,
SpeechT5ForTextToSpeech,
SpeechT5Processor,
SpeechT5Tokenizer,
logging,
)
from transformers.tokenization_utils import AddedToken
logging.set_verbosity_info()
logger = logging.get_logger("transformers.models.speecht5")
MAPPING_SPEECH_ENCODER_PRENET = {
"speech_encoder_prenet.layer_norm": "speecht5.encoder.prenet.feature_projection.layer_norm",
"speech_encoder_prenet.post_extract_proj": "speecht5.encoder.prenet.feature_projection.projection",
"speech_encoder_prenet.pos_conv.0": "speecht5.encoder.prenet.pos_conv_embed.conv",
"speech_encoder_prenet.mask_emb": "speecht5.encoder.prenet.masked_spec_embed",
}
MAPPING_TEXT_ENCODER_PRENET = {
"text_encoder_prenet.encoder_prenet.0": "speecht5.encoder.prenet.embed_tokens",
"text_encoder_prenet.encoder_prenet.1.alpha": "speecht5.encoder.prenet.encode_positions.alpha",
}
MAPPING_SPEECH_DECODER_PRENET = {
"speech_decoder_prenet.decoder_prenet.0.0.prenet.0.0": "speecht5.decoder.prenet.layers.0",
"speech_decoder_prenet.decoder_prenet.0.0.prenet.1.0": "speecht5.decoder.prenet.layers.1",
"speech_decoder_prenet.decoder_prenet.0.1": "speecht5.decoder.prenet.final_layer",
"speech_decoder_prenet.decoder_prenet.1.alpha": "speecht5.decoder.prenet.encode_positions.alpha",
"speech_decoder_prenet.spkembs_layer.0": "speecht5.decoder.prenet.speaker_embeds_layer",
}
MAPPING_SPEECH_DECODER_POSTNET = {
"speech_decoder_postnet.feat_out": "speech_decoder_postnet.feat_out",
"speech_decoder_postnet.prob_out": "speech_decoder_postnet.prob_out",
"speech_decoder_postnet.postnet.postnet.0.0": "speech_decoder_postnet.layers.0.conv",
"speech_decoder_postnet.postnet.postnet.0.1": "speech_decoder_postnet.layers.0.batch_norm",
"speech_decoder_postnet.postnet.postnet.1.0": "speech_decoder_postnet.layers.1.conv",
"speech_decoder_postnet.postnet.postnet.1.1": "speech_decoder_postnet.layers.1.batch_norm",
"speech_decoder_postnet.postnet.postnet.2.0": "speech_decoder_postnet.layers.2.conv",
"speech_decoder_postnet.postnet.postnet.2.1": "speech_decoder_postnet.layers.2.batch_norm",
"speech_decoder_postnet.postnet.postnet.3.0": "speech_decoder_postnet.layers.3.conv",
"speech_decoder_postnet.postnet.postnet.3.1": "speech_decoder_postnet.layers.3.batch_norm",
"speech_decoder_postnet.postnet.postnet.4.0": "speech_decoder_postnet.layers.4.conv",
"speech_decoder_postnet.postnet.postnet.4.1": "speech_decoder_postnet.layers.4.batch_norm",
}
MAPPING_TEXT_DECODER_PRENET = {
"text_decoder_prenet.embed_tokens": "speecht5.decoder.prenet.embed_tokens",
}
MAPPING_TEXT_DECODER_POSTNET = {
"text_decoder_postnet.output_projection": "text_decoder_postnet.lm_head",
}
MAPPING_ENCODER = {
"encoder.layers.*.self_attn.k_proj": "speecht5.encoder.wrapped_encoder.layers.*.attention.k_proj",
"encoder.layers.*.self_attn.v_proj": "speecht5.encoder.wrapped_encoder.layers.*.attention.v_proj",
"encoder.layers.*.self_attn.q_proj": "speecht5.encoder.wrapped_encoder.layers.*.attention.q_proj",
"encoder.layers.*.self_attn.out_proj": "speecht5.encoder.wrapped_encoder.layers.*.attention.out_proj",
"encoder.layers.*.self_attn_layer_norm": "speecht5.encoder.wrapped_encoder.layers.*.layer_norm",
"encoder.layers.*.fc1": "speecht5.encoder.wrapped_encoder.layers.*.feed_forward.intermediate_dense",
"encoder.layers.*.fc2": "speecht5.encoder.wrapped_encoder.layers.*.feed_forward.output_dense",
"encoder.layers.*.final_layer_norm": "speecht5.encoder.wrapped_encoder.layers.*.final_layer_norm",
"encoder.layer_norm": "speecht5.encoder.wrapped_encoder.layer_norm",
"encoder.pos_emb.pe_k": "speecht5.encoder.wrapped_encoder.embed_positions.pe_k",
}
MAPPING_DECODER = {
"decoder.layers.*.self_attn.k_proj": "speecht5.decoder.wrapped_decoder.layers.*.self_attn.k_proj",
"decoder.layers.*.self_attn.v_proj": "speecht5.decoder.wrapped_decoder.layers.*.self_attn.v_proj",
"decoder.layers.*.self_attn.q_proj": "speecht5.decoder.wrapped_decoder.layers.*.self_attn.q_proj",
"decoder.layers.*.self_attn.out_proj": "speecht5.decoder.wrapped_decoder.layers.*.self_attn.out_proj",
"decoder.layers.*.self_attn_layer_norm": "speecht5.decoder.wrapped_decoder.layers.*.self_attn_layer_norm",
"decoder.layers.*.encoder_attn.k_proj": "speecht5.decoder.wrapped_decoder.layers.*.encoder_attn.k_proj",
"decoder.layers.*.encoder_attn.v_proj": "speecht5.decoder.wrapped_decoder.layers.*.encoder_attn.v_proj",
"decoder.layers.*.encoder_attn.q_proj": "speecht5.decoder.wrapped_decoder.layers.*.encoder_attn.q_proj",
"decoder.layers.*.encoder_attn.out_proj": "speecht5.decoder.wrapped_decoder.layers.*.encoder_attn.out_proj",
"decoder.layers.*.encoder_attn_layer_norm": "speecht5.decoder.wrapped_decoder.layers.*.encoder_attn_layer_norm",
"decoder.layers.*.fc1": "speecht5.decoder.wrapped_decoder.layers.*.feed_forward.intermediate_dense",
"decoder.layers.*.fc2": "speecht5.decoder.wrapped_decoder.layers.*.feed_forward.output_dense",
"decoder.layers.*.final_layer_norm": "speecht5.decoder.wrapped_decoder.layers.*.final_layer_norm",
}
MAPPING_S2T = {
**MAPPING_SPEECH_ENCODER_PRENET,
**MAPPING_ENCODER,
**MAPPING_DECODER,
**MAPPING_TEXT_DECODER_PRENET,
**MAPPING_TEXT_DECODER_POSTNET,
}
MAPPING_T2S = {
**MAPPING_TEXT_ENCODER_PRENET,
**MAPPING_ENCODER,
**MAPPING_DECODER,
**MAPPING_SPEECH_DECODER_PRENET,
**MAPPING_SPEECH_DECODER_POSTNET,
}
MAPPING_S2S = {
**MAPPING_SPEECH_ENCODER_PRENET,
**MAPPING_ENCODER,
**MAPPING_DECODER,
**MAPPING_SPEECH_DECODER_PRENET,
**MAPPING_SPEECH_DECODER_POSTNET,
}
TOP_LEVEL_KEYS = []
IGNORE_KEYS = [
"encoder.version",
"encoder.layers.*.norm_k.weight",
"encoder.layers.*.norm_k.bias",
"decoder.version",
"decoder.layers.*.norm_k.weight",
"decoder.layers.*.norm_k.bias",
"decoder.pos_emb.pe_k",
"speech_encoder_prenet.embed_positions._float_tensor",
"text_decoder_prenet.embed_positions._float_tensor",
]
IGNORE_KEYS_S2T = IGNORE_KEYS + [
"encoder.proj",
"text_encoder_prenet.*",
"speech_decoder_prenet.*",
"speech_decoder_postnet.*",
]
IGNORE_KEYS_T2S = IGNORE_KEYS + [
"encoder.proj",
"speech_encoder_prenet.*",
"text_decoder_prenet.*",
"text_decoder_postnet.*",
]
IGNORE_KEYS_S2S = IGNORE_KEYS + [
"encoder.proj",
"text_encoder_prenet.*",
"text_decoder_prenet.*",
"text_decoder_postnet.*",
]
def set_recursively(hf_pointer, key, value, full_name, weight_type):
for attribute in key.split("."):
hf_pointer = getattr(hf_pointer, attribute)
if weight_type is not None:
hf_shape = getattr(hf_pointer, weight_type).shape
else:
hf_shape = hf_pointer.shape
if hf_shape != value.shape:
raise ValueError(
f"Shape of hf {key + '.' + weight_type if weight_type is not None else ''} is {hf_shape}, but should be"
f" {value.shape} for {full_name}"
)
if weight_type == "weight":
hf_pointer.weight.data = value
elif weight_type == "weight_g":
hf_pointer.weight_g.data = value
elif weight_type == "weight_v":
hf_pointer.weight_v.data = value
elif weight_type == "bias":
hf_pointer.bias.data = value
elif weight_type == "running_mean":
hf_pointer.running_mean.data = value
elif weight_type == "running_var":
hf_pointer.running_var.data = value
elif weight_type == "num_batches_tracked":
hf_pointer.num_batches_tracked.data = value
else:
hf_pointer.data = value
logger.info(f"{key + ('.' + weight_type if weight_type is not None else '')} was initialized from {full_name}.")
def should_ignore(name, ignore_keys):
for key in ignore_keys:
if key.endswith(".*"):
if name.startswith(key[:-1]):
return True
elif ".*." in key:
prefix, suffix = key.split(".*.")
if prefix in name and suffix in name:
return True
elif key in name:
return True
return False
def recursively_load_weights(fairseq_dict, hf_model, task):
unused_weights = []
if task == "s2t":
feature_encoder = hf_model.speecht5.encoder.prenet.feature_encoder
MAPPING = MAPPING_S2T
IGNORE_KEYS = IGNORE_KEYS_S2T
elif task == "t2s":
feature_encoder = None
MAPPING = MAPPING_T2S
IGNORE_KEYS = IGNORE_KEYS_T2S
elif task == "s2s":
feature_encoder = hf_model.speecht5.encoder.prenet.feature_encoder
MAPPING = MAPPING_S2S
IGNORE_KEYS = IGNORE_KEYS_S2S
else:
raise ValueError(f"Unsupported task: {task}")
for name, value in fairseq_dict.items():
if should_ignore(name, IGNORE_KEYS):
logger.info(f"{name} was ignored")
continue
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_encoder,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
# mapped_key = "speecht5." + mapped_key if mapped_key not in TOP_LEVEL_KEYS else mapped_key
if "*" in key:
prefix, suffix = key.split(".*.")
if prefix in name and suffix in name:
key = suffix
# if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
if key in name:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "bias" in name:
weight_type = "bias"
elif "weight" in name:
weight_type = "weight"
elif "running_mean" in name:
weight_type = "running_mean"
elif "running_var" in name:
weight_type = "running_var"
elif "num_batches_tracked" in name:
weight_type = "num_batches_tracked"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
def load_conv_layer(full_name, value, feature_extractor, unused_weights, use_group_norm):
name = full_name.split("conv_layers.")[-1]
items = name.split(".")
layer_id = int(items[0])
type_id = int(items[1])
if type_id == 0:
if "bias" in name:
if value.shape != feature_extractor.conv_layers[layer_id].conv.bias.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.bias.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
if value.shape != feature_extractor.conv_layers[layer_id].conv.weight.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.weight.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif (type_id == 2 and not use_group_norm) or (type_id == 2 and layer_id == 0 and use_group_norm):
if "bias" in name:
if value.shape != feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.bias.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
if value.shape != feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape:
raise ValueError(
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.weight.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
else:
unused_weights.append(full_name)
@torch.no_grad()
def convert_speecht5_checkpoint(
task,
checkpoint_path,
pytorch_dump_folder_path,
config_path=None,
vocab_path=None,
repo_id=None,
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = SpeechT5Config.from_pretrained(config_path)
else:
config = SpeechT5Config()
if task == "s2t":
config.max_length = config.max_text_positions
model = SpeechT5ForSpeechToText(config)
elif task == "t2s":
config.max_speech_positions = 1876
config.max_text_positions = 600
config.max_length = config.max_speech_positions
model = SpeechT5ForTextToSpeech(config)
elif task == "s2s":
config.max_speech_positions = 1876
config.max_length = config.max_speech_positions
model = SpeechT5ForSpeechToSpeech(config)
else:
raise ValueError(f"Unknown task name: {task}")
if vocab_path:
tokenizer = SpeechT5Tokenizer(vocab_path, model_max_length=config.max_text_positions)
# Mask token behaves like a normal word, i.e. include the space before it
mask_token = AddedToken("<mask>", lstrip=True, rstrip=False)
tokenizer.mask_token = mask_token
tokenizer.add_special_tokens({"mask_token": mask_token})
tokenizer.add_tokens(["<ctc_blank>"])
feature_extractor = SpeechT5FeatureExtractor()
processor = SpeechT5Processor(tokenizer=tokenizer, feature_extractor=feature_extractor)
processor.save_pretrained(pytorch_dump_folder_path)
fairseq_checkpoint = torch.load(checkpoint_path)
recursively_load_weights(fairseq_checkpoint["model"], model, task)
model.save_pretrained(pytorch_dump_folder_path)
if repo_id:
print("Pushing to the hub...")
processor.push_to_hub(repo_id)
model.push_to_hub(repo_id)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--task",
default="s2t",
type=str,
help="Type of the SpeechT5 model you'd like to convert. Should be one of 's2t', 't2s', 's2s'.",
)
parser.add_argument("--checkpoint_path", required=True, default=None, type=str, help="Path to fairseq checkpoint")
parser.add_argument("--vocab_path", default=None, type=str, help="Path to SentencePiece model")
parser.add_argument("--config_path", default=None, type=str, help="Path to hf config.json of model to convert")
parser.add_argument(
"--pytorch_dump_folder_path", required=True, default=None, type=str, help="Path to the output PyTorch model."
)
parser.add_argument(
"--push_to_hub", default=None, type=str, help="Where to upload the converted model on the 🤗 hub."
)
args = parser.parse_args()
convert_speecht5_checkpoint(
args.task,
args.checkpoint_path,
args.pytorch_dump_folder_path,
args.config_path,
args.vocab_path,
args.push_to_hub,
)
| 17,191 | 41.766169 | 118 | py |
transformers | transformers-main/src/transformers/models/mask2former/convert_mask2former_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import json
import sys
from argparse import ArgumentParser
from dataclasses import dataclass
from pathlib import Path
from pprint import pformat
from typing import Any, Dict, Iterator, List, Set, Tuple
import requests
import torch
import torchvision.transforms as T
from detectron2.checkpoint import DetectionCheckpointer
from detectron2.config import get_cfg
from detectron2.projects.deeplab import add_deeplab_config
from huggingface_hub import hf_hub_download
from PIL import Image
from torch import Tensor, nn
from transformers import (
Mask2FormerConfig,
Mask2FormerForUniversalSegmentation,
Mask2FormerImageProcessor,
Mask2FormerModel,
SwinConfig,
)
from transformers.models.mask2former.modeling_mask2former import (
Mask2FormerForUniversalSegmentationOutput,
Mask2FormerModelOutput,
)
from transformers.utils import logging
StateDict = Dict[str, Tensor]
logging.set_verbosity_info()
logger = logging.get_logger()
torch.manual_seed(0)
class TrackedStateDict:
def __init__(self, to_track: Dict):
"""This class "tracks" a python dictionary by keeping track of which item is accessed.
Args:
to_track (Dict): The dictionary we wish to track
"""
self.to_track = to_track
self._seen: Set[str] = set()
def __getitem__(self, key: str) -> Any:
return self.to_track[key]
def __setitem__(self, key: str, item: Any):
self._seen.add(key)
self.to_track[key] = item
def diff(self) -> List[str]:
"""This method returns a set difference between the keys in the tracked state dict and the one we have access so far.
This is an effective method to check if we have update all the keys
Returns:
List[str]: List of keys not yet updated
"""
return set(self.to_track.keys()) - self._seen
def copy(self) -> Dict:
# proxy the call to the internal dictionary
return self.to_track.copy()
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
img_data = requests.get(url, stream=True).raw
im = Image.open(img_data)
return im
@dataclass
class Args:
"""Fake command line arguments needed by mask2former/detectron implementation"""
config_file: str
def setup_cfg(args: Args):
# load config from file and command-line arguments
cfg = get_cfg()
add_deeplab_config(cfg)
add_maskformer2_config(cfg)
cfg.merge_from_file(args.config_file)
cfg.freeze()
return cfg
class OriginalMask2FormerConfigToOursConverter:
def __call__(self, original_config: object) -> Mask2FormerConfig:
model = original_config.MODEL
repo_id = "huggingface/label-files"
if model.SEM_SEG_HEAD.NUM_CLASSES == 847:
filename = "mask2former-ade20k-full-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 150:
filename = "ade20k-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 80:
filename = "coco-detection-mmdet-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 171:
filename = "mask2former-coco-stuff-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 133:
filename = "coco-panoptic-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 19:
filename = "cityscapes-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 8:
filename = "cityscapes-instance-id2label.json"
elif model.SEM_SEG_HEAD.NUM_CLASSES == 65:
filename = "mapillary-vistas-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
label2id = {label: idx for idx, label in id2label.items()}
if model.SWIN.EMBED_DIM == 96:
backbone_config = SwinConfig.from_pretrained(
"microsoft/swin-tiny-patch4-window7-224", out_features=["stage1", "stage2", "stage3", "stage4"]
)
elif model.SWIN.EMBED_DIM == 128:
backbone_config = SwinConfig(
embed_dim=128,
window_size=12,
depths=(2, 2, 18, 2),
num_heads=(4, 8, 16, 32),
out_features=["stage1", "stage2", "stage3", "stage4"],
)
elif model.SWIN.EMBED_DIM == 192:
backbone_config = SwinConfig.from_pretrained(
"microsoft/swin-large-patch4-window12-384", out_features=["stage1", "stage2", "stage3", "stage4"]
)
else:
raise ValueError(f"embed dim {model.SWIN.EMBED_DIM} not supported for Swin!")
backbone_config.drop_path_rate = model.SWIN.DROP_PATH_RATE
backbone_config.attention_probs_dropout_prob = model.SWIN.ATTN_DROP_RATE
backbone_config.depths = model.SWIN.DEPTHS
config: Mask2FormerConfig = Mask2FormerConfig(
ignore_value=model.SEM_SEG_HEAD.IGNORE_VALUE,
num_labels=model.SEM_SEG_HEAD.NUM_CLASSES,
num_queries=model.MASK_FORMER.NUM_OBJECT_QUERIES,
no_object_weight=model.MASK_FORMER.NO_OBJECT_WEIGHT,
class_weight=model.MASK_FORMER.CLASS_WEIGHT,
mask_weight=model.MASK_FORMER.MASK_WEIGHT,
dice_weight=model.MASK_FORMER.DICE_WEIGHT,
train_num_points=model.MASK_FORMER.TRAIN_NUM_POINTS,
oversample_ratio=model.MASK_FORMER.OVERSAMPLE_RATIO,
importance_sample_ratio=model.MASK_FORMER.IMPORTANCE_SAMPLE_RATIO,
init_std=0.02,
init_xavier_std=1.0,
use_auxiliary_loss=model.MASK_FORMER.DEEP_SUPERVISION,
feature_strides=[4, 8, 16, 32],
backbone_config=backbone_config,
id2label=id2label,
label2id=label2id,
feature_size=model.SEM_SEG_HEAD.CONVS_DIM,
mask_feature_size=model.SEM_SEG_HEAD.MASK_DIM,
hidden_dim=model.MASK_FORMER.HIDDEN_DIM,
encoder_layers=model.SEM_SEG_HEAD.TRANSFORMER_ENC_LAYERS,
encoder_feedforward_dim=1024,
decoder_layers=model.MASK_FORMER.DEC_LAYERS,
num_attention_heads=model.MASK_FORMER.NHEADS,
dropout=model.MASK_FORMER.DROPOUT,
dim_feedforward=model.MASK_FORMER.DIM_FEEDFORWARD,
pre_norm=model.MASK_FORMER.PRE_NORM,
enforce_input_proj=model.MASK_FORMER.ENFORCE_INPUT_PROJ,
common_stride=model.SEM_SEG_HEAD.COMMON_STRIDE,
)
return config
class OriginalMask2FormerConfigToImageProcessorConverter:
def __call__(self, original_config: object) -> Mask2FormerImageProcessor:
model = original_config.MODEL
model_input = original_config.INPUT
return Mask2FormerImageProcessor(
image_mean=(torch.tensor(model.PIXEL_MEAN) / 255).tolist(),
image_std=(torch.tensor(model.PIXEL_STD) / 255).tolist(),
size=model_input.MIN_SIZE_TEST,
max_size=model_input.MAX_SIZE_TEST,
num_labels=model.SEM_SEG_HEAD.NUM_CLASSES,
ignore_index=model.SEM_SEG_HEAD.IGNORE_VALUE,
size_divisibility=32,
)
class OriginalMask2FormerCheckpointToOursConverter:
def __init__(self, original_model: nn.Module, config: Mask2FormerConfig):
self.original_model = original_model
self.config = config
def pop_all(self, renamed_keys: List[Tuple[str, str]], dst_state_dict: StateDict, src_state_dict: StateDict):
for src_key, dst_key in renamed_keys:
dst_state_dict[dst_key] = src_state_dict.pop(src_key)
def replace_maskformer_swin_backbone(
self, dst_state_dict: StateDict, src_state_dict: StateDict, config: Mask2FormerConfig
):
dst_prefix: str = "pixel_level_module.encoder"
src_prefix: str = "backbone"
renamed_keys = [
(
f"{src_prefix}.patch_embed.proj.weight",
f"{dst_prefix}.model.embeddings.patch_embeddings.projection.weight",
),
(f"{src_prefix}.patch_embed.proj.bias", f"{dst_prefix}.model.embeddings.patch_embeddings.projection.bias"),
(f"{src_prefix}.patch_embed.norm.weight", f"{dst_prefix}.model.embeddings.norm.weight"),
(f"{src_prefix}.patch_embed.norm.bias", f"{dst_prefix}.model.embeddings.norm.bias"),
]
num_layers = len(config.backbone_config.depths)
for layer_idx in range(num_layers):
for block_idx in range(config.backbone_config.depths[layer_idx]):
renamed_keys.extend(
[ # src, dst
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm1.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_before.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm1.bias",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_before.bias",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.relative_position_bias_table",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.relative_position_bias_table",
),
]
)
# now we need to handle the attentions
# read in weights + bias of input projection layer of cross-attention
src_att_weight = src_state_dict[f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.weight"]
src_att_bias = src_state_dict[f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.bias"]
size = src_att_weight.shape[0]
offset = size // 3
dst_state_dict[
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.query.weight"
] = src_att_weight[:offset, :]
dst_state_dict[
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.query.bias"
] = src_att_bias[:offset]
dst_state_dict[
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.key.weight"
] = src_att_weight[offset : offset * 2, :]
dst_state_dict[
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.key.bias"
] = src_att_bias[offset : offset * 2]
dst_state_dict[
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.value.weight"
] = src_att_weight[-offset:, :]
dst_state_dict[
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.value.bias"
] = src_att_bias[-offset:]
# let's pop them
src_state_dict.pop(f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.weight")
src_state_dict.pop(f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.bias")
# proj
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.proj.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.output.dense.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.proj.bias",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.output.dense.bias",
),
]
)
# second norm
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm2.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_after.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm2.bias",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_after.bias",
),
]
)
# mlp
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc1.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.intermediate.dense.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc1.bias",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.intermediate.dense.bias",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc2.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.output.dense.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc2.bias",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.output.dense.bias",
),
]
)
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.relative_position_index",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.relative_position_index",
)
]
)
if layer_idx < num_layers - 1:
# patch merging
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.downsample.reduction.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.downsample.reduction.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.downsample.norm.weight",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.downsample.norm.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.downsample.norm.bias",
f"{dst_prefix}.model.encoder.layers.{layer_idx}.downsample.norm.bias",
),
]
)
# hidden states norms
renamed_keys.extend(
[
(
f"{src_prefix}.norm{layer_idx}.weight",
f"{dst_prefix}.hidden_states_norms.{layer_idx}.weight",
),
(
f"{src_prefix}.norm{layer_idx}.bias",
f"{dst_prefix}.hidden_states_norms.{layer_idx}.bias",
),
]
)
self.pop_all(renamed_keys, dst_state_dict, src_state_dict)
def replace_swin_backbone(self, dst_state_dict: StateDict, src_state_dict: StateDict, config: Mask2FormerConfig):
dst_prefix: str = "pixel_level_module.encoder"
src_prefix: str = "backbone"
renamed_keys = [
(
f"{src_prefix}.patch_embed.proj.weight",
f"{dst_prefix}.embeddings.patch_embeddings.projection.weight",
),
(f"{src_prefix}.patch_embed.proj.bias", f"{dst_prefix}.embeddings.patch_embeddings.projection.bias"),
(f"{src_prefix}.patch_embed.norm.weight", f"{dst_prefix}.embeddings.norm.weight"),
(f"{src_prefix}.patch_embed.norm.bias", f"{dst_prefix}.embeddings.norm.bias"),
]
for layer_idx in range(len(config.backbone_config.depths)):
for block_idx in range(config.backbone_config.depths[layer_idx]):
renamed_keys.extend(
[ # src, dst
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm1.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_before.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm1.bias",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_before.bias",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.relative_position_bias_table",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.relative_position_bias_table",
),
]
)
# now we need to handle the attentions
# read in weights + bias of input projection layer of cross-attention
src_att_weight = src_state_dict[f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.weight"]
src_att_bias = src_state_dict[f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.bias"]
size = src_att_weight.shape[0]
offset = size // 3
dst_state_dict[
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.query.weight"
] = src_att_weight[:offset, :]
dst_state_dict[
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.query.bias"
] = src_att_bias[:offset]
dst_state_dict[
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.key.weight"
] = src_att_weight[offset : offset * 2, :]
dst_state_dict[
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.key.bias"
] = src_att_bias[offset : offset * 2]
dst_state_dict[
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.value.weight"
] = src_att_weight[-offset:, :]
dst_state_dict[
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.value.bias"
] = src_att_bias[-offset:]
# let's pop them
src_state_dict.pop(f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.weight")
src_state_dict.pop(f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.qkv.bias")
# proj
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.proj.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.output.dense.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.proj.bias",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.output.dense.bias",
),
]
)
# second norm
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm2.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_after.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.norm2.bias",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.layernorm_after.bias",
),
]
)
# mlp
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc1.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.intermediate.dense.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc1.bias",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.intermediate.dense.bias",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc2.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.output.dense.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.mlp.fc2.bias",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.output.dense.bias",
),
]
)
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.blocks.{block_idx}.attn.relative_position_index",
f"{dst_prefix}.encoder.layers.{layer_idx}.blocks.{block_idx}.attention.self.relative_position_index",
)
]
)
if layer_idx < 3:
# patch merging
renamed_keys.extend(
[
(
f"{src_prefix}.layers.{layer_idx}.downsample.reduction.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.downsample.reduction.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.downsample.norm.weight",
f"{dst_prefix}.encoder.layers.{layer_idx}.downsample.norm.weight",
),
(
f"{src_prefix}.layers.{layer_idx}.downsample.norm.bias",
f"{dst_prefix}.encoder.layers.{layer_idx}.downsample.norm.bias",
),
]
)
# hidden states norms
renamed_keys.extend(
[
(
f"{src_prefix}.norm{layer_idx}.weight",
f"{dst_prefix}.hidden_states_norms.stage{layer_idx+1}.weight",
),
(
f"{src_prefix}.norm{layer_idx}.bias",
f"{dst_prefix}.hidden_states_norms.stage{layer_idx+1}.bias",
),
]
)
self.pop_all(renamed_keys, dst_state_dict, src_state_dict)
# Backbone + Pixel Decoder
def replace_pixel_module(self, dst_state_dict: StateDict, src_state_dict: StateDict):
dst_prefix: str = "pixel_level_module.decoder"
src_prefix: str = "sem_seg_head.pixel_decoder"
self.replace_swin_backbone(dst_state_dict, src_state_dict, self.config)
def rename_keys_for_weight_bias(src_prefix: str, dst_prefix: str):
return [
(f"{src_prefix}.weight", f"{dst_prefix}.weight"),
(f"{src_prefix}.bias", f"{dst_prefix}.bias"),
]
def rename_keys_for_self_attn(src_prefix: str, dst_prefix: str):
self_attn_keys = []
self_attn_keys.extend(
rename_keys_for_weight_bias(f"{src_prefix}.attention_weights", f"{dst_prefix}.attention_weights")
)
self_attn_keys.extend(
rename_keys_for_weight_bias(f"{src_prefix}.output_proj", f"{dst_prefix}.output_proj")
)
self_attn_keys.extend(
rename_keys_for_weight_bias(f"{src_prefix}.sampling_offsets", f"{dst_prefix}.sampling_offsets")
)
self_attn_keys.extend(rename_keys_for_weight_bias(f"{src_prefix}.value_proj", f"{dst_prefix}.value_proj"))
return self_attn_keys
def rename_keys_for_encoder_layer(src_prefix: str, dst_prefix: str):
encoder_keys = []
encoder_keys.extend(rename_keys_for_weight_bias(f"{src_prefix}.linear1", f"{dst_prefix}.fc1"))
encoder_keys.extend(rename_keys_for_weight_bias(f"{src_prefix}.linear2", f"{dst_prefix}.fc2"))
encoder_keys.extend(
rename_keys_for_weight_bias(f"{src_prefix}.norm1", f"{dst_prefix}.self_attn_layer_norm")
)
encoder_keys.extend(rename_keys_for_weight_bias(f"{src_prefix}.norm2", f"{dst_prefix}.final_layer_norm"))
encoder_keys.extend(rename_keys_for_self_attn(f"{src_prefix}.self_attn", f"{dst_prefix}.self_attn"))
return encoder_keys
# convolution layer for final features
renamed_keys = [
(f"{src_prefix}.adapter_1.weight", f"{dst_prefix}.adapter_1.0.weight"),
(f"{src_prefix}.adapter_1.norm.weight", f"{dst_prefix}.adapter_1.1.weight"),
(f"{src_prefix}.adapter_1.norm.bias", f"{dst_prefix}.adapter_1.1.bias"),
]
renamed_keys.extend(
[
(f"{src_prefix}.layer_1.weight", f"{dst_prefix}.layer_1.0.weight"),
(f"{src_prefix}.layer_1.norm.weight", f"{dst_prefix}.layer_1.1.weight"),
(f"{src_prefix}.layer_1.norm.bias", f"{dst_prefix}.layer_1.1.bias"),
]
)
# proj layers
for i in range(3):
for j in range(2):
renamed_keys.extend(
[
(f"{src_prefix}.input_proj.{i}.{j}.weight", f"{dst_prefix}.input_projections.{i}.{j}.weight"),
(f"{src_prefix}.input_proj.{i}.{j}.bias", f"{dst_prefix}.input_projections.{i}.{j}.bias"),
]
)
renamed_keys.extend([(f"{src_prefix}.transformer.level_embed", f"{dst_prefix}.level_embed")])
# layers
for layer_idx in range(self.config.encoder_layers):
renamed_keys.extend(
rename_keys_for_encoder_layer(
f"{src_prefix}.transformer.encoder.layers.{layer_idx}", f"{dst_prefix}.encoder.layers.{layer_idx}"
)
)
# proj
renamed_keys.extend(
[
(f"{src_prefix}.mask_features.weight", f"{dst_prefix}.mask_projection.weight"),
(f"{src_prefix}.mask_features.bias", f"{dst_prefix}.mask_projection.bias"),
]
)
self.pop_all(renamed_keys, dst_state_dict, src_state_dict)
# Transformer Decoder
def rename_keys_in_masked_attention_decoder(self, dst_state_dict: StateDict, src_state_dict: StateDict):
dst_prefix: str = "transformer_module.decoder"
src_prefix: str = "sem_seg_head.predictor"
rename_keys = []
for i in range(self.config.decoder_layers - 1):
rename_keys.append(
(
f"{src_prefix}.transformer_self_attention_layers.{i}.self_attn.out_proj.weight",
f"{dst_prefix}.layers.{i}.self_attn.out_proj.weight",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_self_attention_layers.{i}.self_attn.out_proj.bias",
f"{dst_prefix}.layers.{i}.self_attn.out_proj.bias",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_self_attention_layers.{i}.norm.weight",
f"{dst_prefix}.layers.{i}.self_attn_layer_norm.weight",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_self_attention_layers.{i}.norm.bias",
f"{dst_prefix}.layers.{i}.self_attn_layer_norm.bias",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_cross_attention_layers.{i}.multihead_attn.in_proj_weight",
f"{dst_prefix}.layers.{i}.cross_attn.in_proj_weight",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_cross_attention_layers.{i}.multihead_attn.in_proj_bias",
f"{dst_prefix}.layers.{i}.cross_attn.in_proj_bias",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_cross_attention_layers.{i}.multihead_attn.out_proj.weight",
f"{dst_prefix}.layers.{i}.cross_attn.out_proj.weight",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_cross_attention_layers.{i}.multihead_attn.out_proj.bias",
f"{dst_prefix}.layers.{i}.cross_attn.out_proj.bias",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_cross_attention_layers.{i}.norm.weight",
f"{dst_prefix}.layers.{i}.cross_attn_layer_norm.weight",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_cross_attention_layers.{i}.norm.bias",
f"{dst_prefix}.layers.{i}.cross_attn_layer_norm.bias",
)
)
rename_keys.append(
(f"{src_prefix}.transformer_ffn_layers.{i}.linear1.weight", f"{dst_prefix}.layers.{i}.fc1.weight")
)
rename_keys.append(
(f"{src_prefix}.transformer_ffn_layers.{i}.linear1.bias", f"{dst_prefix}.layers.{i}.fc1.bias")
)
rename_keys.append(
(f"{src_prefix}.transformer_ffn_layers.{i}.linear2.weight", f"{dst_prefix}.layers.{i}.fc2.weight")
)
rename_keys.append(
(f"{src_prefix}.transformer_ffn_layers.{i}.linear2.bias", f"{dst_prefix}.layers.{i}.fc2.bias")
)
rename_keys.append(
(
f"{src_prefix}.transformer_ffn_layers.{i}.norm.weight",
f"{dst_prefix}.layers.{i}.final_layer_norm.weight",
)
)
rename_keys.append(
(
f"{src_prefix}.transformer_ffn_layers.{i}.norm.bias",
f"{dst_prefix}.layers.{i}.final_layer_norm.bias",
)
)
return rename_keys
def replace_masked_attention_decoder(self, dst_state_dict: StateDict, src_state_dict: StateDict):
dst_prefix: str = "transformer_module.decoder"
src_prefix: str = "sem_seg_head.predictor"
renamed_keys = self.rename_keys_in_masked_attention_decoder(dst_state_dict, src_state_dict)
# add more
renamed_keys.extend(
[
(f"{src_prefix}.decoder_norm.weight", f"{dst_prefix}.layernorm.weight"),
(f"{src_prefix}.decoder_norm.bias", f"{dst_prefix}.layernorm.bias"),
]
)
mlp_len = 3
for i in range(mlp_len):
renamed_keys.extend(
[
(
f"{src_prefix}.mask_embed.layers.{i}.weight",
f"{dst_prefix}.mask_predictor.mask_embedder.{i}.0.weight",
),
(
f"{src_prefix}.mask_embed.layers.{i}.bias",
f"{dst_prefix}.mask_predictor.mask_embedder.{i}.0.bias",
),
]
)
self.pop_all(renamed_keys, dst_state_dict, src_state_dict)
def replace_keys_qkv_transformer_decoder(self, dst_state_dict: StateDict, src_state_dict: StateDict):
dst_prefix: str = "transformer_module.decoder.layers"
src_prefix: str = "sem_seg_head.predictor"
for i in range(self.config.decoder_layers - 1):
# read in weights + bias of input projection layer of self-attention
in_proj_weight = src_state_dict.pop(
f"{src_prefix}.transformer_self_attention_layers.{i}.self_attn.in_proj_weight"
)
in_proj_bias = src_state_dict.pop(
f"{src_prefix}.transformer_self_attention_layers.{i}.self_attn.in_proj_bias"
)
# next, add query, keys and values (in that order) to the state dict
dst_state_dict[f"{dst_prefix}.{i}.self_attn.q_proj.weight"] = in_proj_weight[:256, :]
dst_state_dict[f"{dst_prefix}.{i}.self_attn.q_proj.bias"] = in_proj_bias[:256]
dst_state_dict[f"{dst_prefix}.{i}.self_attn.k_proj.weight"] = in_proj_weight[256:512, :]
dst_state_dict[f"{dst_prefix}.{i}.self_attn.k_proj.bias"] = in_proj_bias[256:512]
dst_state_dict[f"{dst_prefix}.{i}.self_attn.v_proj.weight"] = in_proj_weight[-256:, :]
dst_state_dict[f"{dst_prefix}.{i}.self_attn.v_proj.bias"] = in_proj_bias[-256:]
def replace_transformer_module(self, dst_state_dict: StateDict, src_state_dict: StateDict):
dst_prefix: str = "transformer_module"
src_prefix: str = "sem_seg_head.predictor"
self.replace_masked_attention_decoder(dst_state_dict, src_state_dict)
renamed_keys = [
(f"{src_prefix}.query_embed.weight", f"{dst_prefix}.queries_embedder.weight"),
(f"{src_prefix}.query_feat.weight", f"{dst_prefix}.queries_features.weight"),
(f"{src_prefix}.level_embed.weight", f"{dst_prefix}.level_embed.weight"),
]
self.pop_all(renamed_keys, dst_state_dict, src_state_dict)
self.replace_keys_qkv_transformer_decoder(dst_state_dict, src_state_dict)
def replace_universal_segmentation_module(self, dst_state_dict: StateDict, src_state_dict: StateDict):
dst_prefix: str = ""
src_prefix: str = "sem_seg_head.predictor"
renamed_keys = [
(f"{src_prefix}.class_embed.weight", f"{dst_prefix}class_predictor.weight"),
(f"{src_prefix}.class_embed.bias", f"{dst_prefix}class_predictor.bias"),
]
logger.info(f"Replacing keys {pformat(renamed_keys)}")
self.pop_all(renamed_keys, dst_state_dict, src_state_dict)
def convert(self, mask2former: Mask2FormerModel) -> Mask2FormerModel:
dst_state_dict = TrackedStateDict(mask2former.state_dict())
src_state_dict = self.original_model.state_dict()
self.replace_pixel_module(dst_state_dict, src_state_dict)
self.replace_transformer_module(dst_state_dict, src_state_dict)
logger.info(f"Missed keys are {pformat(dst_state_dict.diff())}")
logger.info(f"Not copied keys are {pformat(src_state_dict.keys())}")
logger.info("🙌 Done")
state_dict = {key: dst_state_dict[key] for key in dst_state_dict.to_track.keys()}
mask2former.load_state_dict(state_dict)
return mask2former
def convert_universal_segmentation(
self, mask2former: Mask2FormerForUniversalSegmentation
) -> Mask2FormerForUniversalSegmentation:
dst_state_dict = TrackedStateDict(mask2former.state_dict())
src_state_dict = self.original_model.state_dict()
self.replace_universal_segmentation_module(dst_state_dict, src_state_dict)
state_dict = {key: dst_state_dict[key] for key in dst_state_dict.to_track.keys()}
mask2former.load_state_dict(state_dict)
return mask2former
@staticmethod
def using_dirs(checkpoints_dir: Path, config_dir: Path) -> Iterator[Tuple[object, Path, Path]]:
checkpoints: List[Path] = checkpoints_dir.glob("**/*.pkl")
for checkpoint in checkpoints:
logger.info(f"💪 Converting {checkpoint.stem}")
# find associated config file
# dataset_name e.g 'coco'
dataset_name = checkpoint.parents[2].stem
if dataset_name == "ade":
dataset_name = dataset_name.replace("ade", "ade20k")
# task type e.g 'instance-segmentation'
segmentation_task = checkpoint.parents[1].stem
# config file corresponding to checkpoint
config_file_name = f"{checkpoint.parents[0].stem}.yaml"
config: Path = config_dir / dataset_name / segmentation_task / "swin" / config_file_name
yield config, checkpoint
def test(
original_model,
our_model: Mask2FormerForUniversalSegmentation,
image_processor: Mask2FormerImageProcessor,
tolerance: float,
):
with torch.no_grad():
original_model = original_model.eval()
our_model = our_model.eval()
im = prepare_img()
x = image_processor(images=im, return_tensors="pt")["pixel_values"]
original_model_backbone_features = original_model.backbone(x.clone())
our_model_output: Mask2FormerModelOutput = our_model.model(x.clone(), output_hidden_states=True)
# Test backbone
for original_model_feature, our_model_feature in zip(
original_model_backbone_features.values(), our_model_output.encoder_hidden_states
):
assert torch.allclose(
original_model_feature, our_model_feature, atol=tolerance
), "The backbone features are not the same."
# Test pixel decoder
mask_features, _, multi_scale_features = original_model.sem_seg_head.pixel_decoder.forward_features(
original_model_backbone_features
)
for original_model_feature, our_model_feature in zip(
multi_scale_features, our_model_output.pixel_decoder_hidden_states
):
assert torch.allclose(
original_model_feature, our_model_feature, atol=tolerance
), "The pixel decoder feature are not the same"
# Let's test the full model
tr_complete = T.Compose(
[T.Resize((384, 384)), T.ToTensor()],
)
y = (tr_complete(im) * 255.0).to(torch.int).float()
# modify original Mask2Former code to return mask and class logits
original_class_logits, original_mask_logits = original_model([{"image": y.clone().squeeze(0)}])
our_model_out: Mask2FormerForUniversalSegmentationOutput = our_model(x.clone())
our_mask_logits = our_model_out.masks_queries_logits
our_class_logits = our_model_out.class_queries_logits
assert original_mask_logits.shape == our_mask_logits.shape, "Output masks shapes are not matching."
assert original_class_logits.shape == our_class_logits.shape, "Output class logits shapes are not matching."
assert torch.allclose(
original_class_logits, our_class_logits, atol=tolerance
), "The class logits are not the same."
assert torch.allclose(
original_mask_logits, our_mask_logits, atol=tolerance
), "The predicted masks are not the same."
logger.info("✅ Test passed!")
def get_model_name(checkpoint_file: Path):
# model_name_raw is something like maskformer2_swin_small_bs16_50ep
model_name_raw: str = checkpoint_file.parents[0].stem
# `segmentation_task_type` must be one of the following: `instance-segmentation`, `panoptic-segmentation`, `semantic-segmentation`
segmentation_task_name: str = checkpoint_file.parents[1].stem
if segmentation_task_name not in ["instance-segmentation", "panoptic-segmentation", "semantic-segmentation"]:
raise ValueError(
f"{segmentation_task_name} must be wrong since acceptable values are: instance-segmentation,"
" panoptic-segmentation, semantic-segmentation."
)
# dataset name must be one of the following: `coco`, `ade`, `cityscapes`, `mapillary-vistas`
dataset_name: str = checkpoint_file.parents[2].stem
if dataset_name not in ["coco", "ade", "cityscapes", "mapillary-vistas"]:
raise ValueError(
f"{dataset_name} must be wrong since we didn't find 'coco' or 'ade' or 'cityscapes' or 'mapillary-vistas'"
" in it "
)
backbone = "swin"
backbone_types = ["tiny", "small", "base_IN21k", "base", "large"]
backbone_type = list(filter(lambda x: x in model_name_raw, backbone_types))[0].replace("_", "-")
model_name = f"mask2former-{backbone}-{backbone_type}-{dataset_name}-{segmentation_task_name.split('-')[0]}"
return model_name
if __name__ == "__main__":
parser = ArgumentParser(
description="Command line to convert the original mask2formers (with swin backbone) to our implementations."
)
parser.add_argument(
"--checkpoints_dir",
type=Path,
help=(
"A directory containing the model's checkpoints. The directory has to have the following structure:"
" <DIR_NAME>/<DATASET_NAME>/<SEGMENTATION_TASK_NAME>/<CONFIG_NAME>.pkl"
),
)
parser.add_argument(
"--configs_dir",
type=Path,
help=(
"A directory containing the model's configs, see detectron2 doc. The directory has to have the following"
" structure: <DIR_NAME>/<DATASET_NAME>/<SEGMENTATION_TASK_NAME>/<CONFIG_NAME>.yaml"
),
)
parser.add_argument(
"--mask2former_dir",
required=True,
type=Path,
help=(
"A path to Mask2Former's original implementation directory. You can download from here:"
" https://github.com/facebookresearch/Mask2Former"
),
)
args = parser.parse_args()
checkpoints_dir: Path = args.checkpoints_dir
config_dir: Path = args.configs_dir
mask2former_dir: Path = args.mask2former_dir
# append the path to the parents to mask2former dir
sys.path.append(str(mask2former_dir.parent))
# import original Mask2Former config and model from original source code repo
from Mask2Former.mask2former.config import add_maskformer2_config
from Mask2Former.mask2former.maskformer_model import MaskFormer as OriginalMask2Former
for config_file, checkpoint_file in OriginalMask2FormerCheckpointToOursConverter.using_dirs(
checkpoints_dir, config_dir
):
model_name = get_model_name(checkpoint_file)
image_processor = OriginalMask2FormerConfigToImageProcessorConverter()(
setup_cfg(Args(config_file=config_file))
)
image_processor.size = {"height": 384, "width": 384}
original_config = setup_cfg(Args(config_file=config_file))
mask2former_kwargs = OriginalMask2Former.from_config(original_config)
original_model = OriginalMask2Former(**mask2former_kwargs).eval()
DetectionCheckpointer(original_model).load(str(checkpoint_file))
config: Mask2FormerConfig = OriginalMask2FormerConfigToOursConverter()(original_config)
mask2former = Mask2FormerModel(config=config).eval()
converter = OriginalMask2FormerCheckpointToOursConverter(original_model, config)
mask2former = converter.convert(mask2former)
mask2former_for_segmentation = Mask2FormerForUniversalSegmentation(config=config).eval()
mask2former_for_segmentation.model = mask2former
mask2former_for_segmentation = converter.convert_universal_segmentation(mask2former_for_segmentation)
tolerance = 3e-1
high_tolerance_models = [
"mask2former-swin-base-IN21k-coco-instance",
"mask2former-swin-base-coco-instance",
"mask2former-swin-small-cityscapes-semantic",
]
if model_name in high_tolerance_models:
tolerance = 3e-1
logger.info(f"🪄 Testing {model_name}...")
test(original_model, mask2former_for_segmentation, image_processor, tolerance)
logger.info(f"🪄 Pushing {model_name} to hub...")
image_processor.push_to_hub(model_name)
mask2former_for_segmentation.push_to_hub(model_name)
| 45,674 | 43.779412 | 140 | py |
transformers | transformers-main/src/transformers/models/mask2former/modeling_mask2former.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Mask2Former model."""
import math
import warnings
from dataclasses import dataclass
from typing import Dict, List, Optional, Tuple
import numpy as np
import torch
from torch import Tensor, nn
from ... import AutoBackbone
from ...activations import ACT2FN
from ...file_utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
replace_return_docstrings,
requires_backends,
)
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...utils import logging
from .configuration_mask2former import Mask2FormerConfig
if is_scipy_available():
from scipy.optimize import linear_sum_assignment
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "Mask2FormerConfig"
_CHECKPOINT_FOR_DOC = "facebook/mask2former-swin-small-coco-instance"
_IMAGE_PROCESSOR_FOR_DOC = "Mask2FormerImageProcessor"
MASK2FORMER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/mask2former-swin-small-coco-instance",
# See all mask2former models at https://huggingface.co/models?filter=mask2former
]
@dataclass
class Mask2FormerPixelDecoderOutput(ModelOutput):
"""
Mask2Former's pixel decoder module output, practically a Multi-Scale Deformable Attention based decoder. It returns
the mask features and the multiscale features.
Args:
multi_scale_features (`tuple(torch.FloatTensor)`):
Tuple of multi-scale features of scales [1/8, 1/16, 1/32] and shape `(batch_size, num_channels, height,
width)`from the Multi-Scale Deformable Attenntion based Pixel Decoder.
mask_features (`torch.FloatTensor`):
Tensor of shape `(batch_size, num_channels, height, width)`, 1/4 scale features from the last Pixel Decoder
Layer.
attentions (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights from pixel decoder. Returned when `output_attentions=True` is passed
or when `config.output_attentions=True`
"""
multi_scale_features: Tuple[torch.FloatTensor] = None
mask_features: torch.FloatTensor = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class Mask2FormerMaskedAttentionDecoderOutput(BaseModelOutputWithCrossAttentions):
"""
Base class for outputs of the Transformer decoder. This class adds two attributes to
BaseModelOutputWithCrossAttentions for mask predictions logits and a tuple of intermediate decoder activations,
i.e. the output of each decoder layer, each of them gone through a layernorm.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs. Returned when `output_hidden_states=True`.
attentions (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads. Returned when `output_attentions=True`.
masks_queries_logits (`tuple(torch.FloatTensor)` of shape `(batch_size, num_queries, height, width)`):
Tuple of mask predictions from all layers of the transformer decoder.
intermediate_hidden_states (`tuple(torch.FloatTensor)` of shape `(num_queries, 1, hidden_size)`):
Intermediate decoder activations, i.e. the output of each decoder layer, each of them gone through a
layernorm.
"""
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[torch.FloatTensor] = None
masks_queries_logits: Tuple[torch.FloatTensor] = None
intermediate_hidden_states: Tuple[torch.FloatTensor] = None
@dataclass
class Mask2FormerPixelLevelModuleOutput(ModelOutput):
"""
Mask2Former's pixel level module output. It returns the output of the encoder (optional) and all hidden states
(multi-scale features) from the `decoder`. By default, the `encoder` is a Swin Backbone and the `decoder` is a
Multi-Scale Deformable Attention based decoder.
The `decoder_last_hidden_state` are the **per-pixel embeddings** while `decoder_hidden_states` refer to multi-scale
feature maps produced using **multi-scaling strategy** defined in the paper.
Args:
encoder_last_hidden_state (`torch.FloatTensor`):
Last hidden states (final feature map of shape `(batch_size, num_channels, height, width)`) of the last
stage of the encoder.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`. Hidden states (also
called feature maps) of the model at the output of each stage. Returned if output_hidden_states is set to
True.
decoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)):
1/4 scale features from the last Pixel Decoder Layer.
decoder_hidden_states (`tuple(torch.FloatTensor)`):
Tuple of `torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`. Hidden states (also
called feature maps) of the model at the output of each stage.
"""
encoder_last_hidden_state: torch.FloatTensor = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
decoder_last_hidden_state: torch.FloatTensor = None
decoder_hidden_states: Tuple[torch.FloatTensor] = None
@dataclass
class Mask2FormerModelOutput(ModelOutput):
"""
Class for outputs of [`Mask2FormerModel`]. This class returns all the needed hidden states to compute the logits.
Args:
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`, *optional*):
Last hidden states (final feature map) of the last stage of the encoder model (backbone). Returned when
`output_hidden_states=True` is passed.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
shape `(batch_size, num_channels, height, width)`. Hidden-states (also called feature maps) of the encoder
model at the output of each stage. Returned when `output_hidden_states=True` is passed.
pixel_decoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`, *optional*):
Last hidden states (final feature map) of the last stage of the pixel decoder model.
pixel_decoder_hidden_states (`tuple(torch.FloatTensor)`, , *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
shape `(batch_size, num_channels, height, width)`. Hidden-states (also called feature maps) of the pixel
decoder model at the output of each stage. Returned when `output_hidden_states=True` is passed.
transformer_decoder_last_hidden_state (`tuple(torch.FloatTensor)`):
Final output of the transformer decoder `(batch_size, sequence_length, hidden_size)`.
transformer_decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states (also called feature maps) of the
transformer decoder at the output of each stage. Returned when `output_hidden_states=True` is passed.
transformer_decoder_intermediate_states (`tuple(torch.FloatTensor)` of shape `(num_queries, 1, hidden_size)`):
Intermediate decoder activations, i.e. the output of each decoder layer, each of them gone through a
layernorm.
masks_queries_logits (`tuple(torch.FloatTensor)` of shape `(batch_size, num_queries, height, width)`)
Mask Predictions from each layer in the transformer decoder.
attentions (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `output_attentions=True` is passed):
Tuple of `tuple(torch.FloatTensor)` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Self attentions weights from transformer decoder.
"""
encoder_last_hidden_state: torch.FloatTensor = None
pixel_decoder_last_hidden_state: torch.FloatTensor = None
transformer_decoder_last_hidden_state: torch.FloatTensor = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
pixel_decoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
transformer_decoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
transformer_decoder_intermediate_states: Tuple[torch.FloatTensor] = None
masks_queries_logits: Tuple[torch.FloatTensor] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class Mask2FormerForUniversalSegmentationOutput(ModelOutput):
"""
Class for outputs of [`Mask2FormerForUniversalSegmentationOutput`].
This output can be directly passed to [`~Mask2FormerImageProcessor.post_process_semantic_segmentation`] or
[`~Mask2FormerImageProcessor.post_process_instance_segmentation`] or
[`~Mask2FormerImageProcessor.post_process_panoptic_segmentation`] to compute final segmentation maps. Please, see
[`~Mask2FormerImageProcessor] for details regarding usage.
Args:
loss (`torch.Tensor`, *optional*):
The computed loss, returned when labels are present.
class_queries_logits (`torch.FloatTensor`):
A tensor of shape `(batch_size, num_queries, num_labels + 1)` representing the proposed classes for each
query. Note the `+ 1` is needed because we incorporate the null class.
masks_queries_logits (`torch.FloatTensor`):
A tensor of shape `(batch_size, num_queries, height, width)` representing the proposed masks for each
query.
auxiliary_logits (`List[Dict(str, torch.FloatTensor)]`, *optional*):
List of class and mask predictions from each layer of the transformer decoder.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Last hidden states (final feature map) of the last stage of the encoder model (backbone).
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
shape `(batch_size, num_channels, height, width)`. Hidden-states (also called feature maps) of the encoder
model at the output of each stage.
pixel_decoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Last hidden states (final feature map) of the last stage of the pixel decoder model.
pixel_decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
shape `(batch_size, num_channels, height, width)`. Hidden-states (also called feature maps) of the pixel
decoder model at the output of each stage.
transformer_decoder_last_hidden_state (`tuple(torch.FloatTensor)`):
Final output of the transformer decoder `(batch_size, sequence_length, hidden_size)`.
transformer_decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states (also called feature maps) of the
transformer decoder at the output of each stage.
attentions (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tuple(torch.FloatTensor)` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Self and Cross Attentions weights from transformer decoder.
"""
loss: Optional[torch.FloatTensor] = None
class_queries_logits: torch.FloatTensor = None
masks_queries_logits: torch.FloatTensor = None
auxiliary_logits: Optional[List[Dict[str, torch.FloatTensor]]] = None
encoder_last_hidden_state: torch.FloatTensor = None
pixel_decoder_last_hidden_state: torch.FloatTensor = None
transformer_decoder_last_hidden_state: torch.FloatTensor = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
pixel_decoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
transformer_decoder_hidden_states: Optional[torch.FloatTensor] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
# Copied from transformers.models.detr.modeling_detr._expand_mask
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, target_len: Optional[int] = None):
"""
Expands attention_mask from `[batch_size, seq_len]` to `[batch_size, 1, target_seq_len, source_seq_len]`.
"""
batch_size, source_len = mask.size()
target_len = target_len if target_len is not None else source_len
expanded_mask = mask[:, None, None, :].expand(batch_size, 1, target_len, source_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.bool(), torch.finfo(dtype).min)
# Adapted from https://github.com/facebookresearch/detectron2/blob/main/projects/PointRend/point_rend/point_features.py
def sample_point(
input_features: torch.Tensor, point_coordinates: torch.Tensor, add_dim=False, **kwargs
) -> torch.Tensor:
"""
A wrapper around `torch.nn.functional.grid_sample` to support 3D point_coordinates tensors.
Args:
input_features (`torch.Tensor` of shape (batch_size, channels, height, width)):
A tensor that contains features map on a height * width grid
point_coordinates (`torch.Tensor` of shape (batch_size, num_points, 2) or (batch_size, grid_height, grid_width,:
2)):
A tensor that contains [0, 1] * [0, 1] normalized point coordinates
add_dim (`bool`):
boolean value to keep track of added dimension
Returns:
point_features (`torch.Tensor` of shape (batch_size, channels, num_points) or (batch_size, channels,
height_grid, width_grid):
A tensor that contains features for points in `point_coordinates`.
"""
if point_coordinates.dim() == 3:
add_dim = True
point_coordinates = point_coordinates.unsqueeze(2)
# use nn.function.grid_sample to get features for points in `point_coordinates` via bilinear interpolation
point_features = torch.nn.functional.grid_sample(input_features, 2.0 * point_coordinates - 1.0, **kwargs)
if add_dim:
point_features = point_features.squeeze(3)
return point_features
# Copied from transformers.models.maskformer.modeling_maskformer.dice_loss
def dice_loss(inputs: Tensor, labels: Tensor, num_masks: int) -> Tensor:
r"""
Compute the DICE loss, similar to generalized IOU for masks as follows:
$$ \mathcal{L}_{\text{dice}(x, y) = 1 - \frac{2 * x \cap y }{x \cup y + 1}} $$
In practice, since `labels` is a binary mask, (only 0s and 1s), dice can be computed as follow
$$ \mathcal{L}_{\text{dice}(x, y) = 1 - \frac{2 * x * y }{x + y + 1}} $$
Args:
inputs (`torch.Tensor`):
A tensor representing a mask.
labels (`torch.Tensor`):
A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
(0 for the negative class and 1 for the positive class).
num_masks (`int`):
The number of masks present in the current batch, used for normalization.
Returns:
`torch.Tensor`: The computed loss.
"""
probs = inputs.sigmoid().flatten(1)
numerator = 2 * (probs * labels).sum(-1)
denominator = probs.sum(-1) + labels.sum(-1)
loss = 1 - (numerator + 1) / (denominator + 1)
loss = loss.sum() / num_masks
return loss
def sigmoid_cross_entropy_loss(inputs: torch.Tensor, labels: torch.Tensor, num_masks: int) -> torch.Tensor:
r"""
Args:
inputs (`torch.Tensor`):
A float tensor of arbitrary shape.
labels (`torch.Tensor`):
A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
(0 for the negative class and 1 for the positive class).
Returns:
loss (`torch.Tensor`): The computed loss.
"""
criterion = nn.BCEWithLogitsLoss(reduction="none")
cross_entropy_loss = criterion(inputs, labels)
loss = cross_entropy_loss.mean(1).sum() / num_masks
return loss
# Copied from transformers.models.maskformer.modeling_maskformer.pair_wise_dice_loss
def pair_wise_dice_loss(inputs: Tensor, labels: Tensor) -> Tensor:
"""
A pair wise version of the dice loss, see `dice_loss` for usage.
Args:
inputs (`torch.Tensor`):
A tensor representing a mask
labels (`torch.Tensor`):
A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
(0 for the negative class and 1 for the positive class).
Returns:
`torch.Tensor`: The computed loss between each pairs.
"""
inputs = inputs.sigmoid().flatten(1)
numerator = 2 * torch.einsum("nc,mc->nm", inputs, labels)
# using broadcasting to get a [num_queries, NUM_CLASSES] matrix
denominator = inputs.sum(-1)[:, None] + labels.sum(-1)[None, :]
loss = 1 - (numerator + 1) / (denominator + 1)
return loss
def pair_wise_sigmoid_cross_entropy_loss(inputs: torch.Tensor, labels: torch.Tensor) -> torch.Tensor:
r"""
A pair wise version of the cross entropy loss, see `sigmoid_cross_entropy_loss` for usage.
Args:
inputs (`torch.Tensor`):
A tensor representing a mask.
labels (`torch.Tensor`):
A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
(0 for the negative class and 1 for the positive class).
Returns:
loss (`torch.Tensor`): The computed loss between each pairs.
"""
height_and_width = inputs.shape[1]
criterion = nn.BCEWithLogitsLoss(reduction="none")
cross_entropy_loss_pos = criterion(inputs, torch.ones_like(inputs))
cross_entropy_loss_neg = criterion(inputs, torch.zeros_like(inputs))
loss = torch.einsum("nc,mc->nm", cross_entropy_loss_pos, labels) + torch.einsum(
"nc,mc->nm", cross_entropy_loss_neg, (1 - labels)
)
loss = loss / height_and_width
return loss
# Adapted from https://github.com/facebookresearch/Mask2Former/blob/main/mask2former/modeling/matcher.py
class Mask2FormerHungarianMatcher(nn.Module):
"""This class computes an assignment between the labels and the predictions of the network.
For efficiency reasons, the labels don't include the no_object. Because of this, in general, there are more
predictions than labels. In this case, we do a 1-to-1 matching of the best predictions, while the others are
un-matched (and thus treated as non-objects).
"""
def __init__(
self, cost_class: float = 1.0, cost_mask: float = 1.0, cost_dice: float = 1.0, num_points: int = 12544
):
"""Creates the matcher
Params:
cost_class (`float`, *optional*, defaults to 1.0):
Relative weight of the classification error in the matching cost.
cost_mask (`float`, *optional*, defaults to 1.0):
This is the relative weight of the focal loss of the binary mask in the matching cost.
cost_dice (`float`, *optional*, defaults to 1.0):
This is the relative weight of the dice loss of the binary mask in the matching cost.
num_points (`int`, *optional*, defaults to 12544):
No. of points to sample on which the mask loss will be calculated. The same set of K points are
uniformly sampled for all prediction and ground truth masks to construct the cost matrix for bipartite
matching.
"""
super().__init__()
if cost_class == 0 and cost_mask == 0 and cost_dice == 0:
raise ValueError("All costs cant be 0")
self.num_points = num_points
self.cost_class = cost_class
self.cost_mask = cost_mask
self.cost_dice = cost_dice
@torch.no_grad()
def forward(
self,
masks_queries_logits: torch.Tensor,
class_queries_logits: torch.Tensor,
mask_labels: torch.Tensor,
class_labels: torch.Tensor,
) -> List[Tuple[Tensor]]:
"""
Params:
masks_queries_logits (`torch.Tensor`):
A tensor of dim `batch_size, num_queries, num_labels` with the classification logits.
class_queries_logits (`torch.Tensor`):
A tensor of dim `batch_size, num_queries, height, width` with the predicted masks.
class_labels (`torch.Tensor`):
A tensor of dim `num_target_boxes` (where num_target_boxes is the number of ground-truth objects in the
target) containing the class labels.
mask_labels (`torch.Tensor`):
A tensor of dim `num_target_boxes, height, width` containing the target masks.
Returns:
matched_indices (`List[Tuple[Tensor]]`): A list of size batch_size, containing tuples of (index_i, index_j)
where:
- index_i is the indices of the selected predictions (in order)
- index_j is the indices of the corresponding selected labels (in order)
For each batch element, it holds:
len(index_i) = len(index_j) = min(num_queries, num_target_boxes).
"""
indices: List[Tuple[np.array]] = []
# iterate through batch size
batch_size = masks_queries_logits.shape[0]
for i in range(batch_size):
pred_probs = class_queries_logits[i].softmax(-1)
pred_mask = masks_queries_logits[i]
# Compute the classification cost. Contrary to the loss, we don't use the NLL, but approximate it in 1 - proba[target class]. The 1 is a constant that doesn't change the matching, it can be ommitted.
cost_class = -pred_probs[:, class_labels[i]]
target_mask = mask_labels[i].to(pred_mask)
target_mask = target_mask[:, None]
pred_mask = pred_mask[:, None]
# Sample ground truth and predicted masks
point_coordinates = torch.rand(1, self.num_points, 2, device=pred_mask.device)
target_coordinates = point_coordinates.repeat(target_mask.shape[0], 1, 1)
target_mask = sample_point(target_mask, target_coordinates, align_corners=False).squeeze(1)
pred_coordinates = point_coordinates.repeat(pred_mask.shape[0], 1, 1)
pred_mask = sample_point(pred_mask, pred_coordinates, align_corners=False).squeeze(1)
# compute the cross entropy loss between each mask pairs -> shape (num_queries, num_labels)
cost_mask = pair_wise_sigmoid_cross_entropy_loss(pred_mask, target_mask)
# Compute the dice loss betwen each mask pairs -> shape (num_queries, num_labels)
cost_dice = pair_wise_dice_loss(pred_mask, target_mask)
# final cost matrix
cost_matrix = self.cost_mask * cost_mask + self.cost_class * cost_class + self.cost_dice * cost_dice
# do the assigmented using the hungarian algorithm in scipy
assigned_indices: Tuple[np.array] = linear_sum_assignment(cost_matrix.cpu())
indices.append(assigned_indices)
# It could be stacked in one tensor
matched_indices = [
(torch.as_tensor(i, dtype=torch.int64), torch.as_tensor(j, dtype=torch.int64)) for i, j in indices
]
return matched_indices
# Adapted from https://github.com/facebookresearch/Mask2Former/blob/main/mask2former/modeling/criterion.py
class Mask2FormerLoss(nn.Module):
def __init__(self, config: Mask2FormerConfig, weight_dict: Dict[str, float]):
"""
The Mask2Former Loss. The loss is computed very similar to DETR. The process happens in two steps: 1) we
compute hungarian assignment between ground truth masks and the outputs of the model 2) we supervise each pair
of matched ground-truth / prediction (supervise class and mask)
Args:
config (`Mask2FormerConfig`):
The configuration for Mask2Former model also containing loss calculation specific parameters.
weight_dict (`Dict[str, float]`):
A dictionary of weights to be applied to the different losses.
"""
super().__init__()
requires_backends(self, ["scipy"])
self.num_labels = config.num_labels
self.weight_dict = weight_dict
# Weight to apply to the null class
self.eos_coef = config.no_object_weight
empty_weight = torch.ones(self.num_labels + 1)
empty_weight[-1] = self.eos_coef
self.register_buffer("empty_weight", empty_weight)
# pointwise mask loss parameters
self.num_points = config.train_num_points
self.oversample_ratio = config.oversample_ratio
self.importance_sample_ratio = config.importance_sample_ratio
self.matcher = Mask2FormerHungarianMatcher(
cost_class=1.0,
cost_dice=config.dice_weight,
cost_mask=config.mask_weight,
num_points=self.num_points,
)
def _max_by_axis(self, sizes: List[List[int]]) -> List[int]:
maxes = sizes[0]
for sublist in sizes[1:]:
for index, item in enumerate(sublist):
maxes[index] = max(maxes[index], item)
return maxes
# Adapted from nested_tensor_from_tensor_list() in original implementation
def _pad_images_to_max_in_batch(self, tensors: List[Tensor]) -> Tuple[Tensor, Tensor]:
# get the maximum size in the batch
max_size = self._max_by_axis([list(tensor.shape) for tensor in tensors])
# compute final size
batch_shape = [len(tensors)] + max_size
batch_size, _, height, width = batch_shape
dtype = tensors[0].dtype
device = tensors[0].device
padded_tensors = torch.zeros(batch_shape, dtype=dtype, device=device)
padding_masks = torch.ones((batch_size, height, width), dtype=torch.bool, device=device)
# pad the tensors to the size of the biggest one
for tensor, padded_tensor, padding_mask in zip(tensors, padded_tensors, padding_masks):
padded_tensor[: tensor.shape[0], : tensor.shape[1], : tensor.shape[2]].copy_(tensor)
padding_mask[: tensor.shape[1], : tensor.shape[2]] = False
return padded_tensors, padding_masks
def loss_labels(
self, class_queries_logits: Tensor, class_labels: List[Tensor], indices: Tuple[np.array]
) -> Dict[str, Tensor]:
"""Compute the losses related to the labels using cross entropy.
Args:
class_queries_logits (`torch.Tensor`):
A tensor of shape `batch_size, num_queries, num_labels`
class_labels (`List[torch.Tensor]`):
List of class labels of shape `(labels)`.
indices (`Tuple[np.array])`:
The indices computed by the Hungarian matcher.
Returns:
`Dict[str, Tensor]`: A dict of `torch.Tensor` containing the following key:
- **loss_cross_entropy** -- The loss computed using cross entropy on the predicted and ground truth labels.
"""
pred_logits = class_queries_logits
batch_size, num_queries, _ = pred_logits.shape
criterion = nn.CrossEntropyLoss(weight=self.empty_weight)
idx = self._get_predictions_permutation_indices(indices) # shape of (batch_size, num_queries)
target_classes_o = torch.cat(
[target[j] for target, (_, j) in zip(class_labels, indices)]
) # shape of (batch_size, num_queries)
target_classes = torch.full(
(batch_size, num_queries), fill_value=self.num_labels, dtype=torch.int64, device=pred_logits.device
)
target_classes[idx] = target_classes_o
# Permute target_classes (batch_size, num_queries, num_labels) -> (batch_size, num_labels, num_queries)
pred_logits_transposed = pred_logits.transpose(1, 2)
loss_ce = criterion(pred_logits_transposed, target_classes)
losses = {"loss_cross_entropy": loss_ce}
return losses
def loss_masks(
self,
masks_queries_logits: torch.Tensor,
mask_labels: List[torch.Tensor],
indices: Tuple[np.array],
num_masks: int,
) -> Dict[str, torch.Tensor]:
"""Compute the losses related to the masks using sigmoid_cross_entropy_loss and dice loss.
Args:
masks_queries_logits (`torch.Tensor`):
A tensor of shape `(batch_size, num_queries, height, width)`.
mask_labels (`torch.Tensor`):
List of mask labels of shape `(labels, height, width)`.
indices (`Tuple[np.array])`:
The indices computed by the Hungarian matcher.
num_masks (`int)`:
The number of masks, used for normalization.
Returns:
losses (`Dict[str, Tensor]`): A dict of `torch.Tensor` containing two keys:
- **loss_mask** -- The loss computed using sigmoid cross entropy loss on the predicted and ground truth.
masks.
- **loss_dice** -- The loss computed using dice loss on the predicted on the predicted and ground truth,
masks.
"""
src_idx = self._get_predictions_permutation_indices(indices)
tgt_idx = self._get_targets_permutation_indices(indices)
# shape (batch_size * num_queries, height, width)
pred_masks = masks_queries_logits[src_idx]
# shape (batch_size, num_queries, height, width)
# pad all and stack the targets to the num_labels dimension
target_masks, _ = self._pad_images_to_max_in_batch(mask_labels)
target_masks = target_masks[tgt_idx]
# No need to upsample predictions as we are using normalized coordinates
pred_masks = pred_masks[:, None]
target_masks = target_masks[:, None]
# Sample point coordinates
with torch.no_grad():
point_coordinates = self.sample_points_using_uncertainty(
pred_masks,
lambda logits: self.calculate_uncertainty(logits),
self.num_points,
self.oversample_ratio,
self.importance_sample_ratio,
)
point_labels = sample_point(target_masks, point_coordinates, align_corners=False).squeeze(1)
point_logits = sample_point(pred_masks, point_coordinates, align_corners=False).squeeze(1)
losses = {
"loss_mask": sigmoid_cross_entropy_loss(point_logits, point_labels, num_masks),
"loss_dice": dice_loss(point_logits, point_labels, num_masks),
}
del pred_masks
del target_masks
return losses
def _get_predictions_permutation_indices(self, indices):
# Permute predictions following indices
batch_indices = torch.cat([torch.full_like(src, i) for i, (src, _) in enumerate(indices)])
predictions_indices = torch.cat([src for (src, _) in indices])
return batch_indices, predictions_indices
def _get_targets_permutation_indices(self, indices):
# Permute labels following indices
batch_indices = torch.cat([torch.full_like(tgt, i) for i, (_, tgt) in enumerate(indices)])
target_indices = torch.cat([tgt for (_, tgt) in indices])
return batch_indices, target_indices
def calculate_uncertainty(self, logits: torch.Tensor) -> torch.Tensor:
"""
In Mask2Former paper, uncertainty is estimated as L1 distance between 0.0 and the logit prediction in 'logits'
for the foreground class in `classes`.
Args:
logits (`torch.Tensor`):
A tensor of shape (R, 1, ...) for class-specific or class-agnostic, where R is the total number of predicted masks in all images and C is:
the number of foreground classes. The values are logits.
Returns:
scores (`torch.Tensor`): A tensor of shape (R, 1, ...) that contains uncertainty scores with the most
uncertain locations having the highest uncertainty score.
"""
uncertainty_scores = -(torch.abs(logits))
return uncertainty_scores
def sample_points_using_uncertainty(
self,
logits: torch.Tensor,
uncertainty_function,
num_points: int,
oversample_ratio: int,
importance_sample_ratio: float,
) -> torch.Tensor:
"""
This function is meant for sampling points in [0, 1] * [0, 1] coordinate space based on their uncertainty. The
uncertainty is calculated for each point using the passed `uncertainty function` that takes points logit
prediction as input.
Args:
logits (`float`):
Logit predictions for P points.
uncertainty_function:
A function that takes logit predictions for P points and returns their uncertainties.
num_points (`int`):
The number of points P to sample.
oversample_ratio (`int`):
Oversampling parameter.
importance_sample_ratio (`float`):
Ratio of points that are sampled via importance sampling.
Returns:
point_coordinates (`torch.Tensor`):
Coordinates for P sampled points.
"""
num_boxes = logits.shape[0]
num_points_sampled = int(num_points * oversample_ratio)
# Get random point coordinates
point_coordinates = torch.rand(num_boxes, num_points_sampled, 2, device=logits.device)
# Get sampled prediction value for the point coordinates
point_logits = sample_point(logits, point_coordinates, align_corners=False)
# Calculate the uncertainties based on the sampled prediction values of the points
point_uncertainties = uncertainty_function(point_logits)
num_uncertain_points = int(importance_sample_ratio * num_points)
num_random_points = num_points - num_uncertain_points
idx = torch.topk(point_uncertainties[:, 0, :], k=num_uncertain_points, dim=1)[1]
shift = num_points_sampled * torch.arange(num_boxes, dtype=torch.long, device=logits.device)
idx += shift[:, None]
point_coordinates = point_coordinates.view(-1, 2)[idx.view(-1), :].view(num_boxes, num_uncertain_points, 2)
if num_random_points > 0:
point_coordinates = torch.cat(
[point_coordinates, torch.rand(num_boxes, num_random_points, 2, device=logits.device)],
dim=1,
)
return point_coordinates
def forward(
self,
masks_queries_logits: torch.Tensor,
class_queries_logits: torch.Tensor,
mask_labels: List[torch.Tensor],
class_labels: List[torch.Tensor],
auxiliary_predictions: Optional[Dict[str, torch.Tensor]] = None,
) -> Dict[str, torch.Tensor]:
"""
This performs the loss computation.
Args:
masks_queries_logits (`torch.Tensor`):
A tensor of shape `(batch_size, num_queries, height, width)`.
class_queries_logits (`torch.Tensor`):
A tensor of shape `(batch_size, num_queries, num_labels)`.
mask_labels (`torch.Tensor`):
List of mask labels of shape `(labels, height, width)`.
class_labels (`List[torch.Tensor]`):
List of class labels of shape `(labels)`.
auxiliary_predictions (`Dict[str, torch.Tensor]`, *optional*):
if `use_auxiliary_loss` was set to `true` in [`Mask2FormerConfig`], then it contains the logits from
the inner layers of the Mask2FormerMaskedAttentionDecoder.
Returns:
losses (`Dict[str, Tensor]`): A dict of `torch.Tensor` containing three keys:
- **loss_cross_entropy** -- The loss computed using cross entropy on the predicted and ground truth labels.
- **loss_mask** -- The loss computed using sigmoid cross_entropy loss on the predicted and ground truth
masks.
- **loss_dice** -- The loss computed using dice loss on the predicted on the predicted and ground truth
masks.
if `use_auxiliary_loss` was set to `true` in [`Mask2FormerConfig`], the dictionary contains additional
losses for each auxiliary predictions.
"""
# retrieve the matching between the outputs of the last layer and the labels
indices = self.matcher(masks_queries_logits, class_queries_logits, mask_labels, class_labels)
# compute the average number of target masks for normalization purposes
num_masks = self.get_num_masks(class_labels, device=class_labels[0].device)
# get all the losses
losses: Dict[str, Tensor] = {
**self.loss_masks(masks_queries_logits, mask_labels, indices, num_masks),
**self.loss_labels(class_queries_logits, class_labels, indices),
}
# in case of auxiliary losses, we repeat this process with the output of each intermediate layer.
if auxiliary_predictions is not None:
for idx, aux_outputs in enumerate(auxiliary_predictions):
masks_queries_logits = aux_outputs["masks_queries_logits"]
class_queries_logits = aux_outputs["class_queries_logits"]
loss_dict = self.forward(masks_queries_logits, class_queries_logits, mask_labels, class_labels)
loss_dict = {f"{key}_{idx}": value for key, value in loss_dict.items()}
losses.update(loss_dict)
return losses
def get_num_masks(self, class_labels: torch.Tensor, device: torch.device) -> torch.Tensor:
"""
Computes the average number of target masks across the batch, for normalization purposes.
"""
num_masks = sum([len(classes) for classes in class_labels])
num_masks_pt = torch.as_tensor([num_masks], dtype=torch.float, device=device)
return num_masks_pt
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.multi_scale_deformable_attention
def multi_scale_deformable_attention(
value: Tensor, value_spatial_shapes: Tensor, sampling_locations: Tensor, attention_weights: Tensor
) -> Tensor:
batch_size, _, num_heads, hidden_dim = value.shape
_, num_queries, num_heads, num_levels, num_points, _ = sampling_locations.shape
value_list = value.split([height.item() * width.item() for height, width in value_spatial_shapes], dim=1)
sampling_grids = 2 * sampling_locations - 1
sampling_value_list = []
for level_id, (height, width) in enumerate(value_spatial_shapes):
# batch_size, height*width, num_heads, hidden_dim
# -> batch_size, height*width, num_heads*hidden_dim
# -> batch_size, num_heads*hidden_dim, height*width
# -> batch_size*num_heads, hidden_dim, height, width
value_l_ = (
value_list[level_id].flatten(2).transpose(1, 2).reshape(batch_size * num_heads, hidden_dim, height, width)
)
# batch_size, num_queries, num_heads, num_points, 2
# -> batch_size, num_heads, num_queries, num_points, 2
# -> batch_size*num_heads, num_queries, num_points, 2
sampling_grid_l_ = sampling_grids[:, :, :, level_id].transpose(1, 2).flatten(0, 1)
# batch_size*num_heads, hidden_dim, num_queries, num_points
sampling_value_l_ = nn.functional.grid_sample(
value_l_, sampling_grid_l_, mode="bilinear", padding_mode="zeros", align_corners=False
)
sampling_value_list.append(sampling_value_l_)
# (batch_size, num_queries, num_heads, num_levels, num_points)
# -> (batch_size, num_heads, num_queries, num_levels, num_points)
# -> (batch_size, num_heads, 1, num_queries, num_levels*num_points)
attention_weights = attention_weights.transpose(1, 2).reshape(
batch_size * num_heads, 1, num_queries, num_levels * num_points
)
output = (
(torch.stack(sampling_value_list, dim=-2).flatten(-2) * attention_weights)
.sum(-1)
.view(batch_size, num_heads * hidden_dim, num_queries)
)
return output.transpose(1, 2).contiguous()
# Copied from transformers.models.maskformer.modeling_maskformer.MaskFormerSinePositionEmbedding with MaskFormer->Mask2Former
class Mask2FormerSinePositionEmbedding(nn.Module):
"""
This is a more standard version of the position embedding, very similar to the one used by the Attention is all you
need paper, generalized to work on images.
"""
def __init__(
self, num_pos_feats: int = 64, temperature: int = 10000, normalize: bool = False, scale: Optional[float] = None
):
super().__init__()
if scale is not None and normalize is False:
raise ValueError("normalize should be True if scale is passed")
self.num_pos_feats = num_pos_feats
self.temperature = temperature
self.normalize = normalize
self.scale = 2 * math.pi if scale is None else scale
def forward(self, x: Tensor, mask: Optional[Tensor] = None) -> Tensor:
if mask is None:
mask = torch.zeros((x.size(0), x.size(2), x.size(3)), device=x.device, dtype=torch.bool)
not_mask = ~mask
y_embed = not_mask.cumsum(1, dtype=torch.float32)
x_embed = not_mask.cumsum(2, dtype=torch.float32)
if self.normalize:
eps = 1e-6
y_embed = y_embed / (y_embed[:, -1:, :] + eps) * self.scale
x_embed = x_embed / (x_embed[:, :, -1:] + eps) * self.scale
dim_t = torch.arange(self.num_pos_feats, dtype=torch.float32, device=x.device)
dim_t = self.temperature ** (2 * torch.div(dim_t, 2, rounding_mode="floor") / self.num_pos_feats)
pos_x = x_embed[:, :, :, None] / dim_t
pos_y = y_embed[:, :, :, None] / dim_t
pos_x = torch.stack((pos_x[:, :, :, 0::2].sin(), pos_x[:, :, :, 1::2].cos()), dim=4).flatten(3)
pos_y = torch.stack((pos_y[:, :, :, 0::2].sin(), pos_y[:, :, :, 1::2].cos()), dim=4).flatten(3)
pos = torch.cat((pos_y, pos_x), dim=3).permute(0, 3, 1, 2)
return pos
# Modified from transformers.models.detr.modeling_deformable_detr.DeformableDetrMultiscaleDeformableAttention
class Mask2FormerPixelDecoderEncoderMultiscaleDeformableAttention(nn.Module):
"""
Multiscale deformable attention as proposed in Deformable DETR.
"""
def __init__(self, embed_dim: int, num_heads: int, n_levels: int, n_points: int):
super().__init__()
if embed_dim % num_heads != 0:
raise ValueError(
f"embed_dim (d_model) must be divisible by num_heads, but got {embed_dim} and {num_heads}"
)
dim_per_head = embed_dim // num_heads
# check if dim_per_head is power of 2
if not ((dim_per_head & (dim_per_head - 1) == 0) and dim_per_head != 0):
warnings.warn(
"You'd better set embed_dim (d_model) in DeformableDetrMultiscaleDeformableAttention to make the"
" dimension of each attention head a power of 2 which is more efficient in the authors' CUDA"
" implementation."
)
self.im2col_step = 128
self.d_model = embed_dim
self.n_levels = n_levels
self.n_heads = num_heads
self.n_points = n_points
self.sampling_offsets = nn.Linear(embed_dim, num_heads * n_levels * n_points * 2)
self.attention_weights = nn.Linear(embed_dim, num_heads * n_levels * n_points)
self.value_proj = nn.Linear(embed_dim, embed_dim)
self.output_proj = nn.Linear(embed_dim, embed_dim)
def with_pos_embed(self, tensor: torch.Tensor, position_embeddings: Optional[Tensor]):
return tensor if position_embeddings is None else tensor + position_embeddings
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states=None,
encoder_attention_mask=None,
position_embeddings: Optional[torch.Tensor] = None,
reference_points=None,
spatial_shapes=None,
level_start_index=None,
output_attentions: bool = False,
):
# add position embeddings to the hidden states before projecting to queries and keys
if position_embeddings is not None:
hidden_states = self.with_pos_embed(hidden_states, position_embeddings)
batch_size, num_queries, _ = hidden_states.shape
batch_size, sequence_length, _ = encoder_hidden_states.shape
if (spatial_shapes[:, 0] * spatial_shapes[:, 1]).sum() != sequence_length:
raise ValueError(
"Make sure to align the spatial shapes with the sequence length of the encoder hidden states"
)
value = self.value_proj(encoder_hidden_states)
if attention_mask is not None:
# we invert the attention_mask
value = value.masked_fill(attention_mask[..., None], float(0))
value = value.view(batch_size, sequence_length, self.n_heads, self.d_model // self.n_heads)
sampling_offsets = self.sampling_offsets(hidden_states).view(
batch_size, num_queries, self.n_heads, self.n_levels, self.n_points, 2
)
attention_weights = self.attention_weights(hidden_states).view(
batch_size, num_queries, self.n_heads, self.n_levels * self.n_points
)
attention_weights = nn.functional.softmax(attention_weights, -1).view(
batch_size, num_queries, self.n_heads, self.n_levels, self.n_points
)
# batch_size, num_queries, n_heads, n_levels, n_points, 2
if reference_points.shape[-1] == 2:
offset_normalizer = torch.stack([spatial_shapes[..., 1], spatial_shapes[..., 0]], -1)
sampling_locations = (
reference_points[:, :, None, :, None, :]
+ sampling_offsets / offset_normalizer[None, None, None, :, None, :]
)
elif reference_points.shape[-1] == 4:
sampling_locations = (
reference_points[:, :, None, :, None, :2]
+ sampling_offsets / self.n_points * reference_points[:, :, None, :, None, 2:] * 0.5
)
else:
raise ValueError(f"Last dim of reference_points must be 2 or 4, but got {reference_points.shape[-1]}")
output = multi_scale_deformable_attention(value, spatial_shapes, sampling_locations, attention_weights)
output = self.output_proj(output)
return output, attention_weights
class Mask2FormerPixelDecoderEncoderLayer(nn.Module):
def __init__(self, config: Mask2FormerConfig):
super().__init__()
self.embed_dim = config.feature_size
self.self_attn = Mask2FormerPixelDecoderEncoderMultiscaleDeformableAttention(
embed_dim=self.embed_dim,
num_heads=config.num_attention_heads,
n_levels=3,
n_points=4,
)
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = nn.functional.relu
self.activation_dropout = config.dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_feedforward_dim)
self.fc2 = nn.Linear(config.encoder_feedforward_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
position_embeddings: torch.Tensor = None,
reference_points=None,
spatial_shapes=None,
level_start_index=None,
output_attentions: bool = False,
):
"""
Args:
hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Input to the layer.
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Attention mask.
position_embeddings (`torch.FloatTensor`, *optional*):
Position embeddings, to be added to `hidden_states`.
reference_points (`torch.FloatTensor`, *optional*):
Reference points.
spatial_shapes (`torch.LongTensor`, *optional*):
Spatial shapes of the backbone feature maps.
level_start_index (`torch.LongTensor`, *optional*):
Level start index.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
# Apply Multi-scale Deformable Attention Module on the multi-scale feature maps.
hidden_states, attn_weights = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=hidden_states,
encoder_attention_mask=attention_mask,
position_embeddings=position_embeddings,
reference_points=reference_points,
spatial_shapes=spatial_shapes,
level_start_index=level_start_index,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
if self.training:
if torch.isinf(hidden_states).any() or torch.isnan(hidden_states).any():
clamp_value = torch.finfo(hidden_states.dtype).max - 1000
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights.transpose(1, 0),)
return outputs
# Modified from from transformers.models.detr.modeling_deformable_detr.DeformableDetrEncoder with DeformableDetrEncoder->Mask2FormerPixelDecoderEncoderOnly
class Mask2FormerPixelDecoderEncoderOnly(nn.Module):
"""
Transformer encoder consisting of *config.encoder_layers* deformable attention layers. Each layer is a
[`Mask2FormerPixelDecoderEncoderLayer`]. The encoder updates the flattened multi-scale feature maps through
multiple deformable attention layers.
Args:
config: Mask2FormerConfig
"""
def __init__(self, config: Mask2FormerConfig):
super().__init__()
self.config = config
self.dropout = config.dropout
self.layers = nn.ModuleList(
[Mask2FormerPixelDecoderEncoderLayer(config) for _ in range(config.encoder_layers)]
)
@staticmethod
def get_reference_points(spatial_shapes, valid_ratios, device):
"""
Get reference points for each feature map. Used in decoder.
Args:
spatial_shapes (`torch.LongTensor`):
Spatial shapes of each feature map, has shape of `(num_feature_levels, 2)`.
valid_ratios (`torch.FloatTensor`):
Valid ratios of each feature map, has shape of `(batch_size, num_feature_levels, 2)`.
device (`torch.device`):
Device on which to create the tensors.
Returns:
`torch.FloatTensor` of shape `(batch_size, num_queries, num_feature_levels, 2)`
"""
reference_points_list = []
for lvl, (height, width) in enumerate(spatial_shapes):
ref_y, ref_x = torch.meshgrid(
torch.linspace(0.5, height - 0.5, height, dtype=torch.float32, device=device),
torch.linspace(0.5, width - 0.5, width, dtype=torch.float32, device=device),
indexing="ij",
)
ref_y = ref_y.reshape(-1)[None] / (valid_ratios[:, None, lvl, 1] * height)
ref_x = ref_x.reshape(-1)[None] / (valid_ratios[:, None, lvl, 0] * width)
ref = torch.stack((ref_x, ref_y), -1)
reference_points_list.append(ref)
reference_points = torch.cat(reference_points_list, 1)
reference_points = reference_points[:, :, None] * valid_ratios[:, None]
return reference_points
def forward(
self,
inputs_embeds=None,
attention_mask=None,
position_embeddings=None,
spatial_shapes=None,
level_start_index=None,
valid_ratios=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Args:
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Flattened feature map (output of the backbone + projection layer) that is passed to the encoder.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding pixel features. Mask values selected in `[0, 1]`:
- 1 for pixel features that are real (i.e. **not masked**),
- 0 for pixel features that are padding (i.e. **masked**).
[What are attention masks?](../glossary#attention-mask)
position_embeddings (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Position embeddings that are added to the queries and keys in each self-attention layer.
spatial_shapes (`torch.LongTensor` of shape `(num_feature_levels, 2)`):
Spatial shapes of each feature map.
level_start_index (`torch.LongTensor` of shape `(num_feature_levels)`):
Starting index of each feature map.
valid_ratios (`torch.FloatTensor` of shape `(batch_size, num_feature_levels, 2)`):
Ratio of valid area in each feature level.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
hidden_states = inputs_embeds
reference_points = self.get_reference_points(spatial_shapes, valid_ratios, device=inputs_embeds.device)
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, encoder_layer in enumerate(self.layers):
if output_hidden_states:
all_hidden_states += (hidden_states.transpose(1, 0),)
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
position_embeddings=position_embeddings,
reference_points=reference_points,
spatial_shapes=spatial_shapes,
level_start_index=level_start_index,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states += (hidden_states.transpose(1, 0),)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
# Modified from from transformers.models.detr.modeling_deformable_detr.DeformableDetrModel with DeformableDetrModel->Mask2FormerPixelDecoder
class Mask2FormerPixelDecoder(nn.Module):
def __init__(self, config: Mask2FormerConfig, feature_channels):
super().__init__()
self.config = config
feature_dim = config.feature_size
mask_dim = config.mask_feature_size
num_pos_features = feature_dim // 2
self.position_embedding = Mask2FormerSinePositionEmbedding(num_pos_feats=num_pos_features, normalize=True)
self.num_feature_levels = 3
transformer_in_channels = feature_channels[-self.num_feature_levels :]
self.transformer_feature_strides = config.feature_strides[-self.num_feature_levels :]
self.feature_channels = feature_channels
self.level_embed = nn.Parameter(torch.Tensor(self.num_feature_levels, feature_dim))
# Create input projection layers
if self.num_feature_levels > 1:
input_projections_list = []
for in_channels in transformer_in_channels[::-1]:
input_projections_list.append(
nn.Sequential(
nn.Conv2d(in_channels, feature_dim, kernel_size=1),
nn.GroupNorm(32, feature_dim),
)
)
self.input_projections = nn.ModuleList(input_projections_list)
else:
self.input_projections = nn.ModuleList(
[
nn.Sequential(
nn.Conv2d(transformer_in_channels[-1], feature_dim, kernel_size=1),
nn.GroupNorm(32, feature_dim),
)
]
)
self.encoder = Mask2FormerPixelDecoderEncoderOnly(config)
self.mask_projection = nn.Conv2d(feature_dim, mask_dim, kernel_size=1, stride=1, padding=0)
# Extra FPN levels
stride = min(self.transformer_feature_strides)
self.common_stride = config.common_stride
self.num_fpn_levels = int(np.log2(stride) - np.log2(self.common_stride))
lateral_convs = []
output_convs = []
for idx, in_channels in enumerate(self.feature_channels[: self.num_fpn_levels]):
lateral_conv = nn.Sequential(
nn.Conv2d(in_channels, feature_dim, kernel_size=1, bias=False),
nn.GroupNorm(32, feature_dim),
)
output_conv = nn.Sequential(
nn.Conv2d(feature_dim, feature_dim, kernel_size=3, stride=1, padding=1, bias=False),
nn.GroupNorm(32, feature_dim),
nn.ReLU(),
)
self.add_module("adapter_{}".format(idx + 1), lateral_conv)
self.add_module("layer_{}".format(idx + 1), output_conv)
lateral_convs.append(lateral_conv)
output_convs.append(output_conv)
# Order convolutional layers from low to high resolution
self.lateral_convolutions = lateral_convs[::-1]
self.output_convolutions = output_convs[::-1]
def get_valid_ratio(self, mask):
"""Get the valid ratio of all feature maps."""
_, height, width = mask.shape
valid_height = torch.sum(~mask[:, :, 0], 1)
valid_width = torch.sum(~mask[:, 0, :], 1)
valid_ratio_heigth = valid_height.float() / height
valid_ratio_width = valid_width.float() / width
valid_ratio = torch.stack([valid_ratio_width, valid_ratio_heigth], -1)
return valid_ratio
def forward(
self,
features,
encoder_outputs=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
# Apply 1x1 convolution to reduce the channel dimension to d_model (256 by default)
input_embeds = []
position_embeddings = []
for level, x in enumerate(features[::-1][: self.num_feature_levels]):
input_embeds.append(self.input_projections[level](x.float()))
position_embeddings.append(self.position_embedding(x.float()))
masks = [
torch.zeros((x.size(0), x.size(2), x.size(3)), device=x.device, dtype=torch.bool) for x in input_embeds
]
# Prepare encoder inputs (by flattening)
spatial_shapes = [(embed.shape[2], embed.shape[3]) for embed in input_embeds]
input_embeds_flat = torch.cat([embed.flatten(2).transpose(1, 2) for embed in input_embeds], 1)
spatial_shapes = torch.as_tensor(spatial_shapes, dtype=torch.long, device=input_embeds_flat.device)
masks_flat = torch.cat([mask.flatten(1) for mask in masks], 1)
position_embeddings = [embed.flatten(2).transpose(1, 2) for embed in position_embeddings]
level_pos_embed_flat = [x + self.level_embed[i].view(1, 1, -1) for i, x in enumerate(position_embeddings)]
level_pos_embed_flat = torch.cat(level_pos_embed_flat, 1)
level_start_index = torch.cat((spatial_shapes.new_zeros((1,)), spatial_shapes.prod(1).cumsum(0)[:-1]))
valid_ratios = torch.stack([self.get_valid_ratio(mask) for mask in masks], 1)
# Send input_embeds_flat + masks_flat + level_pos_embed_flat (backbone + proj layer output) through encoder
if encoder_outputs is None:
encoder_outputs = self.encoder(
inputs_embeds=input_embeds_flat,
attention_mask=masks_flat,
position_embeddings=level_pos_embed_flat,
spatial_shapes=spatial_shapes,
level_start_index=level_start_index,
valid_ratios=valid_ratios,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = encoder_outputs.last_hidden_state
batch_size = last_hidden_state.shape[0]
split_sizes = [None] * self.num_feature_levels
for i in range(self.num_feature_levels):
if i < self.num_feature_levels - 1:
split_sizes[i] = level_start_index[i + 1] - level_start_index[i]
else:
split_sizes[i] = last_hidden_state.shape[1] - level_start_index[i]
encoder_output = torch.split(last_hidden_state, [size.item() for size in split_sizes], dim=1)
# Compute final features
outputs = [
x.transpose(1, 2).view(batch_size, -1, spatial_shapes[i][0], spatial_shapes[i][1])
for i, x in enumerate(encoder_output)
]
# Append extra FPN levels to outputs, ordered from low to high resolution
for idx, feature in enumerate(features[: self.num_fpn_levels][::-1]):
lateral_conv = self.lateral_convolutions[idx]
output_conv = self.output_convolutions[idx]
current_fpn = lateral_conv(feature.float())
# Following FPN implementation, we use nearest upsampling here
out = current_fpn + nn.functional.interpolate(
outputs[-1], size=current_fpn.shape[-2:], mode="bilinear", align_corners=False
)
out = output_conv(out)
outputs.append(out)
num_cur_levels = 0
multi_scale_features = []
for out in outputs:
if num_cur_levels < self.num_feature_levels:
multi_scale_features.append(out)
num_cur_levels += 1
return Mask2FormerPixelDecoderOutput(
mask_features=self.mask_projection(outputs[-1]),
multi_scale_features=tuple(multi_scale_features),
attentions=encoder_outputs.attentions,
)
class Mask2FormerPixelLevelModule(nn.Module):
def __init__(self, config: Mask2FormerConfig):
"""
Pixel Level Module proposed in [Masked-attention Mask Transformer for Universal Image
Segmentation](https://arxiv.org/abs/2112.01527). It runs the input image through a backbone and a pixel
decoder, generating multi-scale feature maps and pixel embeddings.
Args:
config ([`Mask2FormerConfig`]):
The configuration used to instantiate this model.
"""
super().__init__()
self.encoder = AutoBackbone.from_config(config.backbone_config)
self.decoder = Mask2FormerPixelDecoder(config, feature_channels=self.encoder.channels)
def forward(self, pixel_values: Tensor, output_hidden_states: bool = False) -> Mask2FormerPixelLevelModuleOutput:
backbone_features = self.encoder(pixel_values).feature_maps
decoder_output = self.decoder(backbone_features, output_hidden_states=output_hidden_states)
return Mask2FormerPixelLevelModuleOutput(
encoder_last_hidden_state=backbone_features[-1],
encoder_hidden_states=tuple(backbone_features) if output_hidden_states else None,
decoder_last_hidden_state=decoder_output.mask_features,
decoder_hidden_states=decoder_output.multi_scale_features,
)
# Modified from transformers.models.detr.modeling_detr.DetrAttention with Detr->Mask2Former
class Mask2FormerAttention(nn.Module):
"""
Multi-headed attention from 'Attention Is All You Need' paper. Here, we add position embeddings to the queries and
keys (as explained in the DETR paper).
"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
if self.head_dim * num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, batch_size: int):
return tensor.view(batch_size, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def with_pos_embed(self, tensor: torch.Tensor, position_embeddings: Optional[Tensor]):
return tensor if position_embeddings is None else tensor + position_embeddings
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_embeddings: Optional[torch.Tensor] = None,
key_value_states: Optional[torch.Tensor] = None,
key_value_position_embeddings: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
hidden_states = hidden_states.permute(1, 0, 2) if hidden_states is not None else None
position_embeddings = position_embeddings.permute(1, 0, 2) if position_embeddings is not None else None
key_value_states = key_value_states.permute(1, 0, 2) if key_value_states is not None else None
key_value_position_embeddings = (
key_value_position_embeddings.permute(1, 0, 2) if key_value_position_embeddings is not None else None
)
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
batch_size, target_len, embed_dim = hidden_states.size()
# add position embeddings to the hidden states before projecting to queries and keys
if position_embeddings is not None:
hidden_states_original = hidden_states
hidden_states = self.with_pos_embed(hidden_states, position_embeddings)
# add key-value position embeddings to the key value states
if key_value_position_embeddings is not None:
key_value_states_original = key_value_states
key_value_states = self.with_pos_embed(key_value_states, key_value_position_embeddings)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, batch_size)
value_states = self._shape(self.v_proj(key_value_states_original), -1, batch_size)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, batch_size)
value_states = self._shape(self.v_proj(hidden_states_original), -1, batch_size)
proj_shape = (batch_size * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, target_len, batch_size).view(*proj_shape)
key_states = key_states.view(*proj_shape)
value_states = value_states.view(*proj_shape)
source_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (batch_size * self.num_heads, target_len, source_len):
raise ValueError(
f"Attention weights should be of size {(batch_size * self.num_heads, target_len, source_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (batch_size * self.num_heads, target_len, source_len):
raise ValueError(
f"Attention mask should be of size {(target_len, batch_size * self.num_heads, source_len)}, but is"
f" {attention_mask.size()}"
)
attn_weights += attention_mask
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(batch_size, self.num_heads, target_len, source_len)
attn_weights = attn_weights_reshaped.view(batch_size * self.num_heads, target_len, source_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (batch_size * self.num_heads, target_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(batch_size, self.num_heads, target_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(batch_size, self.num_heads, target_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
attn_output = attn_output.reshape(batch_size, target_len, embed_dim)
attn_output = self.out_proj(attn_output).permute(1, 0, 2)
return attn_output, attn_weights_reshaped
class Mask2FormerMaskedAttentionDecoderLayer(nn.Module):
"""
The Mask2FormerMaskedAttentionDecoderLayer is made up of self-attention, cross (masked) attention as well as FFN
blocks. The cross attention block used as part of `Mask2FormerMaskedAttentionDecoderLayer` is actually a `masked
attention` block that restricts the attention to localized features centered around predicted segments which leads
to faster convergence and improved performance. The order of self and cross (i.e. masked) attention blocks have
also been swapped in Mask2FormerMaskedAttentionDecoder compared to a standard DetrDecoder as an optimization
improvement.
Args:
config (`Mask2FormerConfig`):
The configuration used to initialize the Mask2FormerMaskedAttentionDecoder.
"""
def __init__(self, config: Mask2FormerConfig):
super().__init__()
self.config = config
self.embed_dim = self.config.hidden_dim
self.pre_norm = self.config.pre_norm
self.self_attn = Mask2FormerAttention(
embed_dim=self.embed_dim,
num_heads=config.num_attention_heads,
dropout=config.dropout,
is_decoder=True,
)
self.dropout = self.config.dropout
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout = self.config.dropout
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.cross_attn = nn.MultiheadAttention(self.embed_dim, self.config.num_attention_heads, self.config.dropout)
self.cross_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, self.config.dim_feedforward)
self.fc2 = nn.Linear(self.config.dim_feedforward, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def with_pos_embed(self, tensor, pos: Optional[Tensor]):
return tensor if pos is None else tensor + pos
def forward_post(
self,
hidden_states: torch.Tensor,
level_index: int = None,
attention_mask: Optional[torch.Tensor] = None,
position_embeddings: Optional[torch.Tensor] = None,
query_position_embeddings: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
):
# Masked(Cross)-Attention Block
cross_attn_weights = None
self_attn_weights = None
residual = hidden_states
hidden_states, cross_attn_weights = self.cross_attn(
query=self.with_pos_embed(hidden_states, query_position_embeddings),
key=self.with_pos_embed(encoder_hidden_states[level_index], position_embeddings[level_index]),
value=encoder_hidden_states[level_index],
attn_mask=encoder_attention_mask,
key_padding_mask=None,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.cross_attn_layer_norm(hidden_states)
# Self Attention Block
residual = hidden_states
hidden_states, self_attn_weights = self.self_attn(
hidden_states=hidden_states,
position_embeddings=query_position_embeddings,
attention_mask=None,
output_attentions=True,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
return outputs
def forward_pre(
self,
hidden_states: torch.Tensor,
level_index: int = None,
attention_mask: Optional[torch.Tensor] = None,
position_embeddings: Optional[torch.Tensor] = None,
query_position_embeddings: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
):
# Masked(Cross)-Attention Block
cross_attn_weights = None
self_attn_weights = None
residual = hidden_states
hidden_states = self.cross_attn_layer_norm(hidden_states)
hidden_states, cross_attn_weights = self.cross_attn(
query=self.with_pos_embed(hidden_states, query_position_embeddings),
key=self.with_pos_embed(encoder_hidden_states[level_index], position_embeddings[level_index]),
value=encoder_hidden_states[level_index],
attn_mask=encoder_attention_mask,
key_padding_mask=None,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
# Self Attention Block
residual = hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
hidden_states, self_attn_weights = self.self_attn(
hidden_states=hidden_states,
position_embeddings=query_position_embeddings,
attention_mask=None,
output_attentions=True,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
# Fully Connected
residual = hidden_states
hidden_states = self.final_layer_norm(hidden_states)
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
return outputs
def forward(
self,
hidden_states: torch.Tensor,
level_index: int = None,
attention_mask: Optional[torch.Tensor] = None,
position_embeddings: Optional[torch.Tensor] = None,
query_position_embeddings: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
):
"""
Args:
hidden_states (`torch.FloatTensor`):
Input to the layer of shape `(seq_len, batch, embed_dim)`.
attention_mask (`torch.FloatTensor`):
Attention mask of shape `(1, seq_len, tgt_len, src_len)`.
position_embeddings (`torch.FloatTensor`, *optional*):
Position embeddings that are added to the keys in the masked-attention layer.
query_position_embeddings (`torch.FloatTensor`, *optional*):
Position embeddings that are added to the queries and keys in the self-attention layer.
encoder_hidden_states (`torch.FloatTensor`):
Cross attention input to the layer of shape `(seq_len, batch, embed_dim)`.
encoder_attention_mask (`torch.FloatTensor`):
Encoder attention mask of size`(1, seq_len, tgt_len, src_len)`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
if self.pre_norm:
outputs = self.forward_pre(
hidden_states=hidden_states,
level_index=level_index,
position_embeddings=position_embeddings,
query_position_embeddings=query_position_embeddings,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
)
else:
outputs = self.forward_post(
hidden_states=hidden_states,
level_index=level_index,
position_embeddings=position_embeddings,
query_position_embeddings=query_position_embeddings,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
)
return outputs
class Mask2FormerMaskedAttentionDecoder(nn.Module):
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a
[`Mask2FormerMaskedAttentionDecoderLayer`]. The decoder updates the query embeddings through multiple cross
(masked) and self-attention layers. The decoder uses a new **masked attention** mechanism instead of the standard
cross-attention, which extracts localized features by constraining cross-attention to within the foreground region
of the predicted mask for each query, instead of attending to the full feature map.
Args:
config (`Mask2FormerConfig`):
Configuration used to instantiate Mask2FormerMaskedAttentionDecoder.
"""
def __init__(self, config: Mask2FormerConfig):
super().__init__()
self.config = config
self.mask_feature_size = config.mask_feature_size
self.dropout = config.dropout
self.layerdrop = config.dropout
self.num_feature_levels = 3 # level embedding (3 scales)
self.decoder_layers = config.decoder_layers - 1
self.layers = nn.ModuleList(
[Mask2FormerMaskedAttentionDecoderLayer(self.config) for _ in range(self.decoder_layers)]
)
self.layernorm = nn.LayerNorm(config.hidden_dim)
self.mask_predictor = Mask2FormerMaskPredictor(
hidden_size=config.hidden_dim,
num_heads=config.num_attention_heads,
mask_feature_size=self.mask_feature_size,
)
self.gradient_checkpointing = False
def forward(
self,
inputs_embeds: torch.Tensor = None,
multi_stage_positional_embeddings: torch.Tensor = None,
pixel_embeddings: torch.Tensor = None,
encoder_hidden_states: torch.Tensor = None,
query_position_embeddings: torch.Tensor = None,
feature_size_list: List = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
r"""
Args:
inputs_embeds (`torch.FloatTensor` of shape `(num_queries, batch_size, hidden_size)`):
The query embeddings that are passed into the decoder.
multi_stage_positional_embeddings (`torch.FloatTensor` of shape `(height*width, batch_size, num_channels)`):
Position embeddings that are added to the keys in each cross(masked)-attention layer.
pixel_embeddings (`torch.FloatTensor`):
Tensor of shape `(batch_size, num_channels, height, width)`, 1/4 scale features from the last Pixel
Decoder.
query_position_embeddings (`torch.FloatTensor` of shape `(num_queries, batch_size, hidden_size)`):
, *optional*): Position embeddings that are added to the queries and keys in each self-attention layer.
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the
cross(masked)-attention of the decoder.
feature_size_list (`List[torch.Size]` ):
This is a list containing shapes (height & width) of multi-scale features from the Pixel Decoder.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if inputs_embeds is not None:
hidden_states = inputs_embeds
# intermediate hidden states with layernorm applied - required for predicting class logits
intermediate = ()
# decoder layers
all_hidden_states = () if output_hidden_states else None
attentions = () if output_attentions else None
# intermediate mask predictions from transformer decoder layers
intermediate_mask_predictions = ()
intermediate_hidden_states = self.layernorm(inputs_embeds)
intermediate += (intermediate_hidden_states,)
predicted_mask, attention_mask = self.mask_predictor(
intermediate_hidden_states, pixel_embeddings, feature_size_list[0]
)
intermediate_mask_predictions += (predicted_mask,)
for idx, decoder_layer in enumerate(self.layers):
if output_hidden_states:
all_hidden_states += (hidden_states,)
dropout_probability = torch.rand([])
if self.training and (dropout_probability < self.layerdrop):
continue
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(decoder_layer),
hidden_states,
attention_mask,
encoder_hidden_states,
None,
None,
)
else:
level_index = idx % self.num_feature_levels
attention_mask[torch.where(attention_mask.sum(-1) == attention_mask.shape[-1])] = False
layer_outputs = decoder_layer(
hidden_states,
level_index=level_index,
position_embeddings=multi_stage_positional_embeddings,
query_position_embeddings=query_position_embeddings,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=attention_mask,
output_attentions=output_attentions,
)
intermediate_hidden_states = self.layernorm(layer_outputs[0])
predicted_mask, attention_mask = self.mask_predictor(
intermediate_hidden_states,
pixel_embeddings,
feature_size_list[(idx + 1) % self.num_feature_levels],
)
intermediate_mask_predictions += (predicted_mask,)
# add intermediate hidden states with layer norm applied which will be used for predicting class logits
intermediate += (intermediate_hidden_states,)
hidden_states = layer_outputs[0]
if output_attentions:
attentions += (layer_outputs[1],)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
hidden_states = hidden_states.transpose(1, 0)
if not return_dict:
outputs = [hidden_states, all_hidden_states, attentions, intermediate, intermediate_mask_predictions]
return tuple(v for v in outputs if v is not None)
return Mask2FormerMaskedAttentionDecoderOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=attentions,
intermediate_hidden_states=intermediate,
masks_queries_logits=intermediate_mask_predictions,
)
# Copied from transformers.models.maskformer.modeling_maskformer.PredictionBlock with MaskFormer->Mask2Former
class Mask2FormerPredictionBlock(nn.Module):
def __init__(self, in_dim: int, out_dim: int, activation: nn.Module) -> None:
super().__init__()
self.layers = [nn.Linear(in_dim, out_dim), activation]
# Maintain submodule indexing as if part of a Sequential block
for i, layer in enumerate(self.layers):
self.add_module(str(i), layer)
def forward(self, input: Tensor) -> Tensor:
hidden_state = input
for layer in self.layers:
hidden_state = layer(hidden_state)
return hidden_state
class Mask2FormerMLPPredictionHead(nn.Module):
def __init__(self, input_dim: int, hidden_dim: int, output_dim: int, num_layers: int = 3):
"""
A classic Multi Layer Perceptron (MLP).
Args:
input_dim (`int`):
The input dimensions.
hidden_dim (`int`):
The hidden dimensions.
output_dim (`int`):
The output dimensions.
num_layers (int, *optional*, defaults to 3):
The number of layers.
"""
super().__init__()
in_dims = [input_dim] + [hidden_dim] * (num_layers - 1)
out_dims = [hidden_dim] * (num_layers - 1) + [output_dim]
self.layers = []
for i, (in_dim, out_dim) in enumerate(zip(in_dims, out_dims)):
activation = nn.ReLU() if i < num_layers - 1 else nn.Identity()
layer = Mask2FormerPredictionBlock(in_dim, out_dim, activation=activation)
self.layers.append(layer)
# Provide backwards compatibility from when the class inherited from nn.Sequential
# In nn.Sequential subclasses, the name given to the layer is its index in the sequence.
# In nn.Module subclasses they derived from the instance attribute they are assigned to e.g.
# self.my_layer_name = Layer()
# We can't give instance attributes integer names i.e. self.0 is not permitted and so need to register
# explicitly
self.add_module(str(i), layer)
def forward(self, input: Tensor) -> Tensor:
hidden_state = input
for layer in self.layers:
hidden_state = layer(hidden_state)
return hidden_state
class Mask2FormerMaskPredictor(nn.Module):
def __init__(self, hidden_size: int, num_heads: int, mask_feature_size: torch.Tensor):
"""
This class is used to get the predicted mask for a given Mask2FormerMaskedAttentionDecoder layer. It also
generates the binarized attention mask associated with the given predicted mask. The attention mask obtained
using predicted mask of the (l-1)th decoder layer is fed to the cross(masked)-attention block of the next
decoder layer as input.
Args:
hidden_size (`int`):
The feature dimension of the Mask2FormerMaskedAttentionDecoder
num_heads (`int`):
The number of heads used in the Mask2FormerMaskedAttentionDecoder
mask_feature_size (`torch.Tensor`):
one of the output dimensions of the predicted masks for each query
"""
super().__init__()
self.hidden_size = hidden_size
self.num_heads = num_heads
self.mask_embedder = Mask2FormerMLPPredictionHead(self.hidden_size, self.hidden_size, mask_feature_size)
def forward(self, outputs: torch.Tensor, pixel_embeddings: torch.Tensor, attention_mask_target_size: int = None):
mask_embeddings = self.mask_embedder(outputs.transpose(0, 1))
# Sum up over the channels
outputs_mask = torch.einsum("bqc, bchw -> bqhw", mask_embeddings, pixel_embeddings)
attention_mask = nn.functional.interpolate(
outputs_mask, size=attention_mask_target_size, mode="bilinear", align_corners=False
)
attention_mask = attention_mask.sigmoid().flatten(2).unsqueeze(1).repeat(1, self.num_heads, 1, 1)
attention_mask = (attention_mask.flatten(0, 1) < 0.5).bool()
attention_mask = attention_mask.detach()
return outputs_mask, attention_mask
class Mask2FormerTransformerModule(nn.Module):
"""
The Mask2Former's transformer module.
"""
def __init__(self, in_features: int, config: Mask2FormerConfig):
super().__init__()
hidden_dim = config.hidden_dim
self.num_feature_levels = 3
self.position_embedder = Mask2FormerSinePositionEmbedding(num_pos_feats=hidden_dim // 2, normalize=True)
self.queries_embedder = nn.Embedding(config.num_queries, hidden_dim)
self.queries_features = nn.Embedding(config.num_queries, hidden_dim)
self.input_projections = []
for _ in range(self.num_feature_levels):
if in_features != hidden_dim or config.enforce_input_projection:
self.input_projections.append(nn.Conv2d(in_features, hidden_dim, kernel_size=1))
else:
self.input_projections.append(nn.Sequential())
self.decoder = Mask2FormerMaskedAttentionDecoder(config=config)
self.level_embed = nn.Embedding(self.num_feature_levels, hidden_dim)
def forward(
self,
multi_scale_features: List[Tensor],
mask_features: Tensor,
output_hidden_states: bool = False,
output_attentions: bool = False,
) -> Mask2FormerMaskedAttentionDecoderOutput:
multi_stage_features = []
multi_stage_positional_embeddings = []
size_list = []
for i in range(self.num_feature_levels):
size_list.append(multi_scale_features[i].shape[-2:])
multi_stage_positional_embeddings.append(self.position_embedder(multi_scale_features[i], None).flatten(2))
multi_stage_features.append(
self.input_projections[i](multi_scale_features[i]).flatten(2)
+ self.level_embed.weight[i][None, :, None]
)
# Flatten (batch_size, num_channels, height, width) -> (height*width, batch_size, num_channels)
multi_stage_positional_embeddings[-1] = multi_stage_positional_embeddings[-1].permute(2, 0, 1)
multi_stage_features[-1] = multi_stage_features[-1].permute(2, 0, 1)
_, batch_size, _ = multi_stage_features[0].shape
# [num_queries, batch_size, num_channels]
query_embeddings = self.queries_embedder.weight.unsqueeze(1).repeat(1, batch_size, 1)
query_features = self.queries_features.weight.unsqueeze(1).repeat(1, batch_size, 1)
decoder_output = self.decoder(
inputs_embeds=query_features,
multi_stage_positional_embeddings=multi_stage_positional_embeddings,
pixel_embeddings=mask_features,
encoder_hidden_states=multi_stage_features,
query_position_embeddings=query_embeddings,
feature_size_list=size_list,
output_hidden_states=output_hidden_states,
output_attentions=output_attentions,
return_dict=True,
)
return decoder_output
MASK2FORMER_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`Mask2FormerConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
MASK2FORMER_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`AutoImageProcessor.preprocess`] for details.
pixel_mask (`torch.LongTensor` of shape `(batch_size, height, width)`, *optional*):
Mask to avoid performing attention on padding pixel values. Mask values selected in `[0, 1]`:
- 1 for pixels that are real (i.e. **not masked**),
- 0 for pixels that are padding (i.e. **masked**).
[What are attention masks?](../glossary#attention-mask)
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of Detr's decoder attention layers.
return_dict (`bool`, *optional*):
Whether or not to return a [`~Mask2FormerModelOutput`] instead of a plain tuple.
"""
class Mask2FormerPreTrainedModel(PreTrainedModel):
config_class = Mask2FormerConfig
base_model_prefix = "model"
main_input_name = "pixel_values"
def _init_weights(self, module: nn.Module):
xavier_std = self.config.init_xavier_std
std = self.config.init_std
if isinstance(module, Mask2FormerTransformerModule):
if module.input_projections is not None:
for input_projection in module.input_projections:
if not isinstance(input_projection, nn.Sequential):
nn.init.xavier_uniform_(input_projection.weight, gain=xavier_std)
nn.init.constant_(input_projection.bias, 0)
elif isinstance(module, Mask2FormerPixelDecoderEncoderMultiscaleDeformableAttention):
nn.init.constant_(module.sampling_offsets.weight.data, 0.0)
thetas = torch.arange(module.n_heads, dtype=torch.float32) * (2.0 * math.pi / module.n_heads)
grid_init = torch.stack([thetas.cos(), thetas.sin()], -1)
grid_init = (
(grid_init / grid_init.abs().max(-1, keepdim=True)[0])
.view(module.n_heads, 1, 1, 2)
.repeat(1, module.n_levels, module.n_points, 1)
)
for i in range(module.n_points):
grid_init[:, :, i, :] *= i + 1
with torch.no_grad():
module.sampling_offsets.bias = nn.Parameter(grid_init.view(-1))
nn.init.constant_(module.attention_weights.weight.data, 0.0)
nn.init.constant_(module.attention_weights.bias.data, 0.0)
nn.init.xavier_uniform_(module.value_proj.weight.data)
nn.init.constant_(module.value_proj.bias.data, 0.0)
nn.init.xavier_uniform_(module.output_proj.weight.data)
nn.init.constant_(module.output_proj.bias.data, 0.0)
elif isinstance(module, Mask2FormerMaskedAttentionDecoderLayer):
for p in module.parameters():
if p.dim() > 1:
nn.init.xavier_uniform_(p, gain=xavier_std)
elif isinstance(module, Mask2FormerPixelLevelModule):
for submodule in module.modules():
if isinstance(submodule, (nn.Conv2d, nn.Linear)):
submodule.weight.data.normal_(mean=0.0, std=std)
if submodule.bias is not None:
submodule.bias.data.zero_()
elif isinstance(module, Mask2FormerPixelDecoder):
for p in module.parameters():
if p.dim() > 1:
nn.init.xavier_uniform_(p)
nn.init.normal_(module.level_embed, std=0)
elif isinstance(module, Mask2FormerPixelDecoderEncoderOnly):
for p in module.parameters():
if p.dim() > 1:
nn.init.xavier_uniform_(p)
elif isinstance(module, (nn.Linear, nn.Conv2d, nn.BatchNorm2d)):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
if hasattr(module, "reference_points"):
nn.init.xavier_uniform_(module.reference_points.weight.data, gain=1.0)
nn.init.constant_(module.reference_points.bias.data, 0.0)
@add_start_docstrings(
"The bare Mask2Former Model outputting raw hidden-states without any specific head on top.",
MASK2FORMER_START_DOCSTRING,
)
class Mask2FormerModel(Mask2FormerPreTrainedModel):
main_input_name = "pixel_values"
def __init__(self, config: Mask2FormerConfig):
super().__init__(config)
self.pixel_level_module = Mask2FormerPixelLevelModule(config)
self.transformer_module = Mask2FormerTransformerModule(in_features=config.feature_size, config=config)
self.post_init()
@add_start_docstrings_to_model_forward(MASK2FORMER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Mask2FormerModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Tensor,
pixel_mask: Optional[Tensor] = None,
output_hidden_states: Optional[bool] = None,
output_attentions: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Mask2FormerModelOutput:
r"""
Returns:
`Mask2FormerModelOutput`
Examples:
```python
>>> import torch
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoImageProcessor, Mask2FormerModel
>>> # load image
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> # load image preprocessor and Mask2FormerModel trained on COCO instance segmentation dataset
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/mask2former-swin-small-coco-instance")
>>> model = Mask2FormerModel.from_pretrained("facebook/mask2former-swin-small-coco-instance")
>>> inputs = image_processor(image, return_tensors="pt")
>>> # forward pass
>>> with torch.no_grad():
... outputs = model(**inputs)
>>> # model outputs last hidden states of shape (batch_size, num_queries, hidden_size)
>>> print(outputs.transformer_decoder_last_hidden_state.shape)
torch.Size([1, 100, 256])
```
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
batch_size, _, height, width = pixel_values.shape
if pixel_mask is None:
pixel_mask = torch.ones((batch_size, height, width), device=pixel_values.device)
pixel_level_module_output = self.pixel_level_module(
pixel_values=pixel_values, output_hidden_states=output_hidden_states
)
transformer_module_output = self.transformer_module(
multi_scale_features=pixel_level_module_output.decoder_hidden_states,
mask_features=pixel_level_module_output.decoder_last_hidden_state,
output_hidden_states=True,
output_attentions=output_attentions,
)
encoder_hidden_states = None
pixel_decoder_hidden_states = None
transformer_decoder_hidden_states = None
transformer_decoder_intermediate_states = None
if output_hidden_states:
encoder_hidden_states = pixel_level_module_output.encoder_hidden_states
pixel_decoder_hidden_states = pixel_level_module_output.decoder_hidden_states
transformer_decoder_hidden_states = transformer_module_output.hidden_states
transformer_decoder_intermediate_states = transformer_module_output.intermediate_hidden_states
output = Mask2FormerModelOutput(
encoder_last_hidden_state=pixel_level_module_output.encoder_last_hidden_state,
pixel_decoder_last_hidden_state=pixel_level_module_output.decoder_last_hidden_state,
transformer_decoder_last_hidden_state=transformer_module_output.last_hidden_state,
encoder_hidden_states=encoder_hidden_states,
pixel_decoder_hidden_states=pixel_decoder_hidden_states,
transformer_decoder_hidden_states=transformer_decoder_hidden_states,
transformer_decoder_intermediate_states=transformer_decoder_intermediate_states,
attentions=transformer_module_output.attentions,
masks_queries_logits=transformer_module_output.masks_queries_logits,
)
if not return_dict:
output = tuple(v for v in output.values() if v is not None)
return output
@add_start_docstrings(
"The Mask2Former Model with heads on top for instance/semantic/panoptic segmentation.",
MASK2FORMER_START_DOCSTRING,
)
class Mask2FormerForUniversalSegmentation(Mask2FormerPreTrainedModel):
main_input_name = "pixel_values"
def __init__(self, config: Mask2FormerConfig):
super().__init__(config)
self.model = Mask2FormerModel(config)
self.weight_dict: Dict[str, float] = {
"loss_cross_entropy": config.class_weight,
"loss_mask": config.mask_weight,
"loss_dice": config.dice_weight,
}
self.class_predictor = nn.Linear(config.hidden_dim, config.num_labels + 1)
self.criterion = Mask2FormerLoss(config=config, weight_dict=self.weight_dict)
self.post_init()
def get_loss_dict(
self,
masks_queries_logits: Tensor,
class_queries_logits: Tensor,
mask_labels: Tensor,
class_labels: Tensor,
auxiliary_predictions: Dict[str, Tensor],
) -> Dict[str, Tensor]:
loss_dict: Dict[str, Tensor] = self.criterion(
masks_queries_logits=masks_queries_logits,
class_queries_logits=class_queries_logits,
mask_labels=mask_labels,
class_labels=class_labels,
auxiliary_predictions=auxiliary_predictions,
)
# weight each loss by `self.weight_dict[<LOSS_NAME>]` including auxiliary losses
for key, weight in self.weight_dict.items():
for loss_key, loss in loss_dict.items():
if key in loss_key:
loss *= weight
return loss_dict
def get_loss(self, loss_dict: Dict[str, Tensor]) -> Tensor:
return sum(loss_dict.values())
def get_auxiliary_logits(self, classes: torch.Tensor, output_masks: torch.Tensor):
auxiliary_logits: List[Dict(str, Tensor)] = []
for aux_binary_masks, aux_classes in zip(output_masks[:-1], classes[:-1]):
auxiliary_logits.append({"masks_queries_logits": aux_binary_masks, "class_queries_logits": aux_classes})
return auxiliary_logits
@add_start_docstrings_to_model_forward(MASK2FORMER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Mask2FormerForUniversalSegmentationOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Tensor,
mask_labels: Optional[List[Tensor]] = None,
class_labels: Optional[List[Tensor]] = None,
pixel_mask: Optional[Tensor] = None,
output_hidden_states: Optional[bool] = None,
output_auxiliary_logits: Optional[bool] = None,
output_attentions: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Mask2FormerForUniversalSegmentationOutput:
r"""
mask_labels (`List[torch.Tensor]`, *optional*):
List of mask labels of shape `(num_labels, height, width)` to be fed to a model
class_labels (`List[torch.LongTensor]`, *optional*):
list of target class labels of shape `(num_labels, height, width)` to be fed to a model. They identify the
labels of `mask_labels`, e.g. the label of `mask_labels[i][j]` if `class_labels[i][j]`.
Returns:
`Mask2FormerUniversalSegmentationOutput`
Examples:
Instance segmentation example:
```python
>>> from transformers import AutoImageProcessor, Mask2FormerForUniversalSegmentation
>>> from PIL import Image
>>> import requests
>>> import torch
>>> # Load Mask2Former trained on COCO instance segmentation dataset
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/mask2former-swin-small-coco-instance")
>>> model = Mask2FormerForUniversalSegmentation.from_pretrained(
... "facebook/mask2former-swin-small-coco-instance"
... )
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = image_processor(image, return_tensors="pt")
>>> with torch.no_grad():
... outputs = model(**inputs)
>>> # Model predicts class_queries_logits of shape `(batch_size, num_queries)`
>>> # and masks_queries_logits of shape `(batch_size, num_queries, height, width)`
>>> class_queries_logits = outputs.class_queries_logits
>>> masks_queries_logits = outputs.masks_queries_logits
>>> # Perform post-processing to get instance segmentation map
>>> pred_instance_map = image_processor.post_process_semantic_segmentation(
... outputs, target_sizes=[image.size[::-1]]
... )[0]
>>> print(pred_instance_map.shape)
torch.Size([480, 640])
```
Semantic segmentation example:
```python
>>> from transformers import AutoImageProcessor, Mask2FormerForUniversalSegmentation
>>> from PIL import Image
>>> import requests
>>> import torch
>>> # Load Mask2Former trained on ADE20k semantic segmentation dataset
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/mask2former-swin-small-ade-semantic")
>>> model = Mask2FormerForUniversalSegmentation.from_pretrained("facebook/mask2former-swin-small-ade-semantic")
>>> url = (
... "https://huggingface.co/datasets/hf-internal-testing/fixtures_ade20k/resolve/main/ADE_val_00000001.jpg"
... )
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = image_processor(image, return_tensors="pt")
>>> with torch.no_grad():
... outputs = model(**inputs)
>>> # Model predicts class_queries_logits of shape `(batch_size, num_queries)`
>>> # and masks_queries_logits of shape `(batch_size, num_queries, height, width)`
>>> class_queries_logits = outputs.class_queries_logits
>>> masks_queries_logits = outputs.masks_queries_logits
>>> # Perform post-processing to get semantic segmentation map
>>> pred_semantic_map = image_processor.post_process_semantic_segmentation(
... outputs, target_sizes=[image.size[::-1]]
... )[0]
>>> print(pred_semantic_map.shape)
torch.Size([512, 683])
```
Panoptic segmentation example:
```python
>>> from transformers import AutoImageProcessor, Mask2FormerForUniversalSegmentation
>>> from PIL import Image
>>> import requests
>>> import torch
>>> # Load Mask2Former trained on CityScapes panoptic segmentation dataset
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/mask2former-swin-small-cityscapes-panoptic")
>>> model = Mask2FormerForUniversalSegmentation.from_pretrained(
... "facebook/mask2former-swin-small-cityscapes-panoptic"
... )
>>> url = "https://cdn-media.huggingface.co/Inference-API/Sample-results-on-the-Cityscapes-dataset-The-above-images-show-how-our-method-can-handle.png"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = image_processor(image, return_tensors="pt")
>>> with torch.no_grad():
... outputs = model(**inputs)
>>> # Model predicts class_queries_logits of shape `(batch_size, num_queries)`
>>> # and masks_queries_logits of shape `(batch_size, num_queries, height, width)`
>>> class_queries_logits = outputs.class_queries_logits
>>> masks_queries_logits = outputs.masks_queries_logits
>>> # Perform post-processing to get panoptic segmentation map
>>> pred_panoptic_map = image_processor.post_process_panoptic_segmentation(
... outputs, target_sizes=[image.size[::-1]]
... )[0]["segmentation"]
>>> print(pred_panoptic_map.shape)
torch.Size([338, 676])
```
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.model(
pixel_values=pixel_values,
pixel_mask=pixel_mask,
output_hidden_states=output_hidden_states or self.config.use_auxiliary_loss,
output_attentions=output_attentions,
return_dict=True,
)
loss, loss_dict, auxiliary_logits = None, None, None
class_queries_logits = ()
for decoder_output in outputs.transformer_decoder_intermediate_states:
class_prediction = self.class_predictor(decoder_output.transpose(0, 1))
class_queries_logits += (class_prediction,)
masks_queries_logits = outputs.masks_queries_logits
auxiliary_logits = self.get_auxiliary_logits(class_queries_logits, masks_queries_logits)
if mask_labels is not None and class_labels is not None:
loss_dict = self.get_loss_dict(
masks_queries_logits=masks_queries_logits[-1],
class_queries_logits=class_queries_logits[-1],
mask_labels=mask_labels,
class_labels=class_labels,
auxiliary_predictions=auxiliary_logits,
)
loss = self.get_loss(loss_dict)
encoder_hidden_states = None
pixel_decoder_hidden_states = None
transformer_decoder_hidden_states = None
if output_hidden_states:
encoder_hidden_states = outputs.encoder_hidden_states
pixel_decoder_hidden_states = outputs.pixel_decoder_hidden_states
transformer_decoder_hidden_states = outputs.transformer_decoder_hidden_states
output_auxiliary_logits = (
self.config.output_auxiliary_logits if output_auxiliary_logits is None else output_auxiliary_logits
)
if not output_auxiliary_logits:
auxiliary_logits = None
output = Mask2FormerForUniversalSegmentationOutput(
loss=loss,
class_queries_logits=class_queries_logits[-1],
masks_queries_logits=masks_queries_logits[-1],
auxiliary_logits=auxiliary_logits,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
pixel_decoder_last_hidden_state=outputs.pixel_decoder_last_hidden_state,
transformer_decoder_last_hidden_state=outputs.transformer_decoder_last_hidden_state,
encoder_hidden_states=encoder_hidden_states,
pixel_decoder_hidden_states=pixel_decoder_hidden_states,
transformer_decoder_hidden_states=transformer_decoder_hidden_states,
attentions=outputs.attentions,
)
if not return_dict:
output = tuple(v for v in output.values() if v is not None)
if loss is not None:
output = ((loss)) + output
return output
| 120,588 | 46.123486 | 211 | py |
transformers | transformers-main/src/transformers/models/mask2former/configuration_mask2former.py | # coding=utf-8
# Copyright 2022 Meta Platforms, Inc.and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Mask2Former model configuration"""
import copy
from typing import Dict, List, Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
from ..auto import CONFIG_MAPPING
MASK2FORMER_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/mask2former-swin-small-coco-instance": (
"https://huggingface.co/facebook/mask2former-swin-small-coco-instance/blob/main/config.json"
)
# See all Mask2Former models at https://huggingface.co/models?filter=mask2former
}
logger = logging.get_logger(__name__)
class Mask2FormerConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`Mask2FormerModel`]. It is used to instantiate a
Mask2Former model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the Mask2Former
[facebook/mask2former-swin-small-coco-instance](https://huggingface.co/facebook/mask2former-swin-small-coco-instance)
architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Currently, Mask2Former only supports the [Swin Transformer](swin) as backbone.
Args:
backbone_config (`PretrainedConfig` or `dict`, *optional*, defaults to `SwinConfig()`):
The configuration of the backbone model. If unset, the configuration corresponding to
`swin-base-patch4-window12-384` will be used.
feature_size (`int`, *optional*, defaults to 256):
The features (channels) of the resulting feature maps.
mask_feature_size (`int`, *optional*, defaults to 256):
The masks' features size, this value will also be used to specify the Feature Pyramid Network features'
size.
hidden_dim (`int`, *optional*, defaults to 256):
Dimensionality of the encoder layers.
encoder_feedforward_dim (`int`, *optional*, defaults to 1024):
Dimension of feedforward network for deformable detr encoder used as part of pixel decoder.
encoder_layers (`int`, *optional*, defaults to 6):
Number of layers in the deformable detr encoder used as part of pixel decoder.
decoder_layers (`int`, *optional*, defaults to 10):
Number of layers in the Transformer decoder.
num_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder.
dim_feedforward (`int`, *optional*, defaults to 2048):
Feature dimension in feedforward network for transformer decoder.
pre_norm (`bool`, *optional*, defaults to `False`):
Whether to use pre-LayerNorm or not for transformer decoder.
enforce_input_projection (`bool`, *optional*, defaults to `False`):
Whether to add an input projection 1x1 convolution even if the input channels and hidden dim are identical
in the Transformer decoder.
common_stride (`int`, *optional*, defaults to 4):
Parameter used for determining number of FPN levels used as part of pixel decoder.
ignore_value (`int`, *optional*, defaults to 255):
Category id to be ignored during training.
num_queries (`int`, *optional*, defaults to 100):
Number of queries for the decoder.
no_object_weight (`int`, *optional*, defaults to 0.1):
The weight to apply to the null (no object) class.
class_weight (`int`, *optional*, defaults to 2.0):
The weight for the cross entropy loss.
mask_weight (`int`, *optional*, defaults to 5.0):
The weight for the mask loss.
dice_weight (`int`, *optional*, defaults to 5.0):
The weight for the dice loss.
train_num_points (`str` or `function`, *optional*, defaults to 12544):
Number of points used for sampling during loss calculation.
oversample_ratio (`float`, *optional*, defaults to 3.0):
Oversampling parameter used for calculating no. of sampled points
importance_sample_ratio (`float`, *optional*, defaults to 0.75):
Ratio of points that are sampled via importance sampling.
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
init_xavier_std (`float``, *optional*, defaults to 1.0):
The scaling factor used for the Xavier initialization gain in the HM Attention map module.
use_auxiliary_loss (`boolean``, *optional*, defaults to `True`):
If `True` [`Mask2FormerForUniversalSegmentationOutput`] will contain the auxiliary losses computed using
the logits from each decoder's stage.
feature_strides (`List[int]`, *optional*, defaults to `[4, 8, 16, 32]`):
Feature strides corresponding to features generated from backbone network.
output_auxiliary_logits (`bool`, *optional*):
Should the model output its `auxiliary_logits` or not.
Examples:
```python
>>> from transformers import Mask2FormerConfig, Mask2FormerModel
>>> # Initializing a Mask2Former facebook/mask2former-swin-small-coco-instance configuration
>>> configuration = Mask2FormerConfig()
>>> # Initializing a model (with random weights) from the facebook/mask2former-swin-small-coco-instance style configuration
>>> model = Mask2FormerModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```
"""
model_type = "mask2former"
backbones_supported = ["swin"]
attribute_map = {"hidden_size": "hidden_dim"}
def __init__(
self,
backbone_config: Optional[Dict] = None,
feature_size: int = 256,
mask_feature_size: int = 256,
hidden_dim: int = 256,
encoder_feedforward_dim: int = 1024,
activation_function: str = "relu",
encoder_layers: int = 6,
decoder_layers: int = 10,
num_attention_heads: int = 8,
dropout: float = 0.0,
dim_feedforward: int = 2048,
pre_norm: bool = False,
enforce_input_projection: bool = False,
common_stride: int = 4,
ignore_value: int = 255,
num_queries: int = 100,
no_object_weight: float = 0.1,
class_weight: float = 2.0,
mask_weight: float = 5.0,
dice_weight: float = 5.0,
train_num_points: int = 12544,
oversample_ratio: float = 3.0,
importance_sample_ratio: float = 0.75,
init_std: float = 0.02,
init_xavier_std: float = 1.0,
use_auxiliary_loss: bool = True,
feature_strides: List[int] = [4, 8, 16, 32],
output_auxiliary_logits: bool = None,
**kwargs,
):
if backbone_config is None:
logger.info("`backbone_config` is `None`. Initializing the config with the default `Swin` backbone.")
backbone_config = CONFIG_MAPPING["swin"](
image_size=224,
in_channels=3,
patch_size=4,
embed_dim=96,
depths=[2, 2, 18, 2],
num_heads=[3, 6, 12, 24],
window_size=7,
drop_path_rate=0.3,
use_absolute_embeddings=False,
out_features=["stage1", "stage2", "stage3", "stage4"],
)
if isinstance(backbone_config, dict):
backbone_model_type = backbone_config.pop("model_type")
config_class = CONFIG_MAPPING[backbone_model_type]
backbone_config = config_class.from_dict(backbone_config)
# verify that the backbone is supported
if backbone_config.model_type not in self.backbones_supported:
logger.warning_once(
f"Backbone {backbone_config.model_type} is not a supported model and may not be compatible with Mask2Former. "
f"Supported model types: {','.join(self.backbones_supported)}"
)
self.backbone_config = backbone_config
self.feature_size = feature_size
self.mask_feature_size = mask_feature_size
self.hidden_dim = hidden_dim
self.encoder_feedforward_dim = encoder_feedforward_dim
self.activation_function = activation_function
self.encoder_layers = encoder_layers
self.decoder_layers = decoder_layers
self.num_attention_heads = num_attention_heads
self.dropout = dropout
self.dim_feedforward = dim_feedforward
self.pre_norm = pre_norm
self.enforce_input_projection = enforce_input_projection
self.common_stride = common_stride
self.ignore_value = ignore_value
self.num_queries = num_queries
self.no_object_weight = no_object_weight
self.class_weight = class_weight
self.mask_weight = mask_weight
self.dice_weight = dice_weight
self.train_num_points = train_num_points
self.oversample_ratio = oversample_ratio
self.importance_sample_ratio = importance_sample_ratio
self.init_std = init_std
self.init_xavier_std = init_xavier_std
self.use_auxiliary_loss = use_auxiliary_loss
self.feature_strides = feature_strides
self.output_auxiliary_logits = output_auxiliary_logits
self.num_hidden_layers = decoder_layers
super().__init__(**kwargs)
@classmethod
def from_backbone_config(cls, backbone_config: PretrainedConfig, **kwargs):
"""Instantiate a [`Mask2FormerConfig`] (or a derived class) from a pre-trained backbone model configuration.
Args:
backbone_config ([`PretrainedConfig`]):
The backbone configuration.
Returns:
[`Mask2FormerConfig`]: An instance of a configuration object
"""
return cls(
backbone_config=backbone_config,
**kwargs,
)
def to_dict(self) -> Dict[str, any]:
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
output["backbone_config"] = self.backbone_config.to_dict()
output["model_type"] = self.__class__.model_type
return output
| 11,404 | 45.55102 | 127 | py |
transformers | transformers-main/src/transformers/models/mask2former/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_mask2former": [
"MASK2FORMER_PRETRAINED_CONFIG_ARCHIVE_MAP",
"Mask2FormerConfig",
],
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_mask2former"] = ["Mask2FormerImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_mask2former"] = [
"MASK2FORMER_PRETRAINED_MODEL_ARCHIVE_LIST",
"Mask2FormerForUniversalSegmentation",
"Mask2FormerModel",
"Mask2FormerPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_mask2former import MASK2FORMER_PRETRAINED_CONFIG_ARCHIVE_MAP, Mask2FormerConfig
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_mask2former import Mask2FormerImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_mask2former import (
MASK2FORMER_PRETRAINED_MODEL_ARCHIVE_LIST,
Mask2FormerForUniversalSegmentation,
Mask2FormerModel,
Mask2FormerPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 2,357 | 30.026316 | 105 | py |
transformers | transformers-main/src/transformers/models/mask2former/image_processing_mask2former.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for Mask2Former."""
import math
import warnings
from typing import Any, Dict, Iterable, List, Optional, Set, Tuple, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
PaddingMode,
get_resize_output_image_size,
normalize,
pad,
rescale,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_batched,
to_numpy_array,
valid_images,
)
from ...utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
TensorType,
is_torch_available,
is_torch_tensor,
logging,
)
logger = logging.get_logger(__name__)
if is_torch_available():
import torch
from torch import nn
# Copied from transformers.models.detr.image_processing_detr.max_across_indices
def max_across_indices(values: Iterable[Any]) -> List[Any]:
"""
Return the maximum value across all indices of an iterable of values.
"""
return [max(values_i) for values_i in zip(*values)]
# Copied from transformers.models.detr.image_processing_detr.get_max_height_width
def get_max_height_width(images: List[np.ndarray]) -> List[int]:
"""
Get the maximum height and width across all images in a batch.
"""
input_channel_dimension = infer_channel_dimension_format(images[0])
if input_channel_dimension == ChannelDimension.FIRST:
_, max_height, max_width = max_across_indices([img.shape for img in images])
elif input_channel_dimension == ChannelDimension.LAST:
max_height, max_width, _ = max_across_indices([img.shape for img in images])
else:
raise ValueError(f"Invalid channel dimension format: {input_channel_dimension}")
return (max_height, max_width)
# Copied from transformers.models.detr.image_processing_detr.make_pixel_mask
def make_pixel_mask(image: np.ndarray, output_size: Tuple[int, int]) -> np.ndarray:
"""
Make a pixel mask for the image, where 1 indicates a valid pixel and 0 indicates padding.
Args:
image (`np.ndarray`):
Image to make the pixel mask for.
output_size (`Tuple[int, int]`):
Output size of the mask.
"""
input_height, input_width = get_image_size(image)
mask = np.zeros(output_size, dtype=np.int64)
mask[:input_height, :input_width] = 1
return mask
# Copied from transformers.models.detr.image_processing_detr.binary_mask_to_rle
def binary_mask_to_rle(mask):
"""
Converts given binary mask of shape `(height, width)` to the run-length encoding (RLE) format.
Args:
mask (`torch.Tensor` or `numpy.array`):
A binary mask tensor of shape `(height, width)` where 0 denotes background and 1 denotes the target
segment_id or class_id.
Returns:
`List`: Run-length encoded list of the binary mask. Refer to COCO API for more information about the RLE
format.
"""
if is_torch_tensor(mask):
mask = mask.numpy()
pixels = mask.flatten()
pixels = np.concatenate([[0], pixels, [0]])
runs = np.where(pixels[1:] != pixels[:-1])[0] + 1
runs[1::2] -= runs[::2]
return list(runs)
# Copied from transformers.models.detr.image_processing_detr.convert_segmentation_to_rle
def convert_segmentation_to_rle(segmentation):
"""
Converts given segmentation map of shape `(height, width)` to the run-length encoding (RLE) format.
Args:
segmentation (`torch.Tensor` or `numpy.array`):
A segmentation map of shape `(height, width)` where each value denotes a segment or class id.
Returns:
`List[List]`: A list of lists, where each list is the run-length encoding of a segment / class id.
"""
segment_ids = torch.unique(segmentation)
run_length_encodings = []
for idx in segment_ids:
mask = torch.where(segmentation == idx, 1, 0)
rle = binary_mask_to_rle(mask)
run_length_encodings.append(rle)
return run_length_encodings
# Copied from transformers.models.detr.image_processing_detr.remove_low_and_no_objects
def remove_low_and_no_objects(masks, scores, labels, object_mask_threshold, num_labels):
"""
Binarize the given masks using `object_mask_threshold`, it returns the associated values of `masks`, `scores` and
`labels`.
Args:
masks (`torch.Tensor`):
A tensor of shape `(num_queries, height, width)`.
scores (`torch.Tensor`):
A tensor of shape `(num_queries)`.
labels (`torch.Tensor`):
A tensor of shape `(num_queries)`.
object_mask_threshold (`float`):
A number between 0 and 1 used to binarize the masks.
Raises:
`ValueError`: Raised when the first dimension doesn't match in all input tensors.
Returns:
`Tuple[`torch.Tensor`, `torch.Tensor`, `torch.Tensor`]`: The `masks`, `scores` and `labels` without the region
< `object_mask_threshold`.
"""
if not (masks.shape[0] == scores.shape[0] == labels.shape[0]):
raise ValueError("mask, scores and labels must have the same shape!")
to_keep = labels.ne(num_labels) & (scores > object_mask_threshold)
return masks[to_keep], scores[to_keep], labels[to_keep]
# Copied from transformers.models.detr.image_processing_detr.check_segment_validity
def check_segment_validity(mask_labels, mask_probs, k, mask_threshold=0.5, overlap_mask_area_threshold=0.8):
# Get the mask associated with the k class
mask_k = mask_labels == k
mask_k_area = mask_k.sum()
# Compute the area of all the stuff in query k
original_area = (mask_probs[k] >= mask_threshold).sum()
mask_exists = mask_k_area > 0 and original_area > 0
# Eliminate disconnected tiny segments
if mask_exists:
area_ratio = mask_k_area / original_area
if not area_ratio.item() > overlap_mask_area_threshold:
mask_exists = False
return mask_exists, mask_k
# Copied from transformers.models.detr.image_processing_detr.compute_segments
def compute_segments(
mask_probs,
pred_scores,
pred_labels,
mask_threshold: float = 0.5,
overlap_mask_area_threshold: float = 0.8,
label_ids_to_fuse: Optional[Set[int]] = None,
target_size: Tuple[int, int] = None,
):
height = mask_probs.shape[1] if target_size is None else target_size[0]
width = mask_probs.shape[2] if target_size is None else target_size[1]
segmentation = torch.zeros((height, width), dtype=torch.int32, device=mask_probs.device)
segments: List[Dict] = []
if target_size is not None:
mask_probs = nn.functional.interpolate(
mask_probs.unsqueeze(0), size=target_size, mode="bilinear", align_corners=False
)[0]
current_segment_id = 0
# Weigh each mask by its prediction score
mask_probs *= pred_scores.view(-1, 1, 1)
mask_labels = mask_probs.argmax(0) # [height, width]
# Keep track of instances of each class
stuff_memory_list: Dict[str, int] = {}
for k in range(pred_labels.shape[0]):
pred_class = pred_labels[k].item()
should_fuse = pred_class in label_ids_to_fuse
# Check if mask exists and large enough to be a segment
mask_exists, mask_k = check_segment_validity(
mask_labels, mask_probs, k, mask_threshold, overlap_mask_area_threshold
)
if mask_exists:
if pred_class in stuff_memory_list:
current_segment_id = stuff_memory_list[pred_class]
else:
current_segment_id += 1
# Add current object segment to final segmentation map
segmentation[mask_k] = current_segment_id
segment_score = round(pred_scores[k].item(), 6)
segments.append(
{
"id": current_segment_id,
"label_id": pred_class,
"was_fused": should_fuse,
"score": segment_score,
}
)
if should_fuse:
stuff_memory_list[pred_class] = current_segment_id
return segmentation, segments
# TODO: (Amy) Move to image_transforms
def convert_segmentation_map_to_binary_masks(
segmentation_map: "np.ndarray",
instance_id_to_semantic_id: Optional[Dict[int, int]] = None,
ignore_index: Optional[int] = None,
reduce_labels: bool = False,
):
if reduce_labels and ignore_index is None:
raise ValueError("If `reduce_labels` is True, `ignore_index` must be provided.")
if reduce_labels:
segmentation_map = np.where(segmentation_map == 0, ignore_index, segmentation_map - 1)
# Get unique ids (class or instance ids based on input)
all_labels = np.unique(segmentation_map)
# Drop background label if applicable
if ignore_index is not None:
all_labels = all_labels[all_labels != ignore_index]
# Generate a binary mask for each object instance
binary_masks = [(segmentation_map == i) for i in all_labels]
binary_masks = np.stack(binary_masks, axis=0) # (num_labels, height, width)
# Convert instance ids to class ids
if instance_id_to_semantic_id is not None:
labels = np.zeros(all_labels.shape[0])
for label in all_labels:
class_id = instance_id_to_semantic_id[label + 1 if reduce_labels else label]
labels[all_labels == label] = class_id - 1 if reduce_labels else class_id
else:
labels = all_labels
return binary_masks.astype(np.float32), labels.astype(np.int64)
def get_mask2former_resize_output_image_size(
image: np.ndarray,
size: Union[int, Tuple[int, int], List[int], Tuple[int]],
max_size: Optional[int] = None,
size_divisor: int = 0,
default_to_square: bool = True,
) -> tuple:
"""
Computes the output size given the desired size.
Args:
input_image (`np.ndarray`):
The input image.
size (`int`, `Tuple[int, int]`, `List[int]`, `Tuple[int]`):
The size of the output image.
default_to_square (`bool`, *optional*, defaults to `True`):
Whether to default to square if no size is provided.
max_size (`int`, *optional*):
The maximum size of the output image.
size_divisible (`int`, *optional*, defaults to `0`):
If size_divisible is given, the output image size will be divisible by the number.
Returns:
`Tuple[int, int]`: The output size.
"""
output_size = get_resize_output_image_size(
input_image=image, size=size, default_to_square=default_to_square, max_size=max_size
)
if size_divisor > 0:
height, width = output_size
height = int(math.ceil(height / size_divisor) * size_divisor)
width = int(math.ceil(width / size_divisor) * size_divisor)
output_size = (height, width)
return output_size
class Mask2FormerImageProcessor(BaseImageProcessor):
r"""
Constructs a Mask2Former image processor. The image processor can be used to prepare image(s) and optional targets
for the model.
This image processor inherits from [`BaseImageProcessor`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the input to a certain `size`.
size (`int`, *optional*, defaults to 800):
Resize the input to the given size. Only has an effect if `do_resize` is set to `True`. If size is a
sequence like `(width, height)`, output size will be matched to this. If size is an int, smaller edge of
the image will be matched to this number. i.e, if `height > width`, then image will be rescaled to `(size *
height / width, size)`.
max_size (`int`, *optional*, defaults to 1333):
The largest size an image dimension can have (otherwise it's capped). Only has an effect if `do_resize` is
set to `True`.
resample (`int`, *optional*, defaults to `PIL.Image.Resampling.BILINEAR`):
An optional resampling filter. This can be one of `PIL.Image.Resampling.NEAREST`,
`PIL.Image.Resampling.BOX`, `PIL.Image.Resampling.BILINEAR`, `PIL.Image.Resampling.HAMMING`,
`PIL.Image.Resampling.BICUBIC` or `PIL.Image.Resampling.LANCZOS`. Only has an effect if `do_resize` is set
to `True`.
size_divisor (`int`, *optional*, defaults to 32):
Some backbones need images divisible by a certain number. If not passed, it defaults to the value used in
Swin Transformer.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the input to a certain `scale`.
rescale_factor (`float`, *optional*, defaults to 1/ 255):
Rescale the input by the given factor. Only has an effect if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether or not to normalize the input with mean and standard deviation.
image_mean (`int`, *optional*, defaults to `[0.485, 0.456, 0.406]`):
The sequence of means for each channel, to be used when normalizing images. Defaults to the ImageNet mean.
image_std (`int`, *optional*, defaults to `[0.229, 0.224, 0.225]`):
The sequence of standard deviations for each channel, to be used when normalizing images. Defaults to the
ImageNet std.
ignore_index (`int`, *optional*):
Label to be assigned to background pixels in segmentation maps. If provided, segmentation map pixels
denoted with 0 (background) will be replaced with `ignore_index`.
reduce_labels (`bool`, *optional*, defaults to `False`):
Whether or not to decrement all label values of segmentation maps by 1. Usually used for datasets where 0
is used for background, and background itself is not included in all classes of a dataset (e.g. ADE20k).
The background label will be replaced by `ignore_index`.
"""
model_input_names = ["pixel_values", "pixel_mask"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
size_divisor: int = 32,
resample: PILImageResampling = PILImageResampling.BILINEAR,
do_rescale: bool = True,
rescale_factor: float = 1 / 255,
do_normalize: bool = True,
image_mean: Union[float, List[float]] = None,
image_std: Union[float, List[float]] = None,
ignore_index: Optional[int] = None,
reduce_labels: bool = False,
**kwargs,
):
if "size_divisibility" in kwargs:
warnings.warn(
"The `size_divisibility` argument is deprecated and will be removed in v4.27. Please use "
"`size_divisor` instead.",
FutureWarning,
)
size_divisor = kwargs.pop("size_divisibility")
if "max_size" in kwargs:
warnings.warn(
"The `max_size` argument is deprecated and will be removed in v4.27. Please use size['longest_edge']"
" instead.",
FutureWarning,
)
# We make max_size a private attribute so we can pass it as a default value in the preprocess method whilst
# `size` can still be pass in as an int
self._max_size = kwargs.pop("max_size")
else:
self._max_size = 1333
size = size if size is not None else {"shortest_edge": 800, "longest_edge": self._max_size}
size = get_size_dict(size, max_size=self._max_size, default_to_square=False)
super().__init__(**kwargs)
self.do_resize = do_resize
self.size = size
self.resample = resample
self.size_divisor = size_divisor
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
self.ignore_index = ignore_index
self.reduce_labels = reduce_labels
@classmethod
def from_dict(cls, image_processor_dict: Dict[str, Any], **kwargs):
"""
Overrides the `from_dict` method from the base class to make sure parameters are updated if image processor is
created using from_dict and kwargs e.g. `Mask2FormerImageProcessor.from_pretrained(checkpoint, max_size=800)`
"""
image_processor_dict = image_processor_dict.copy()
if "max_size" in kwargs:
image_processor_dict["max_size"] = kwargs.pop("max_size")
if "size_divisibility" in kwargs:
image_processor_dict["size_divisibility"] = kwargs.pop("size_divisibility")
return super().from_dict(image_processor_dict, **kwargs)
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
size_divisor: int = 0,
resample: PILImageResampling = PILImageResampling.BILINEAR,
data_format=None,
**kwargs,
) -> np.ndarray:
"""
Resize the image to the given size. Size can be min_size (scalar) or `(height, width)` tuple. If size is an
int, smaller edge of the image will be matched to this number.
"""
if "max_size" in kwargs:
warnings.warn(
"The `max_size` parameter is deprecated and will be removed in v4.27. "
"Please specify in `size['longest_edge'] instead`.",
FutureWarning,
)
max_size = kwargs.pop("max_size")
else:
max_size = None
size = get_size_dict(size, max_size=max_size, default_to_square=False)
if "shortest_edge" in size and "longest_edge" in size:
size, max_size = size["shortest_edge"], size["longest_edge"]
elif "height" in size and "width" in size:
size = (size["height"], size["width"])
max_size = None
else:
raise ValueError(
"Size must contain 'height' and 'width' keys or 'shortest_edge' and 'longest_edge' keys. Got"
f" {size.keys()}."
)
size = get_mask2former_resize_output_image_size(
image=image,
size=size,
max_size=max_size,
size_divisor=size_divisor,
default_to_square=False,
)
image = resize(image, size=size, resample=resample, data_format=data_format)
return image
def rescale(
self, image: np.ndarray, rescale_factor: float, data_format: Optional[ChannelDimension] = None
) -> np.ndarray:
"""
Rescale the image by the given factor.
"""
return rescale(image, rescale_factor, data_format=data_format)
def normalize(
self,
image: np.ndarray,
mean: Union[float, Iterable[float]],
std: Union[float, Iterable[float]],
data_format: Optional[ChannelDimension] = None,
) -> np.ndarray:
"""
Normalize the image with the given mean and standard deviation.
"""
return normalize(image, mean=mean, std=std, data_format=data_format)
def convert_segmentation_map_to_binary_masks(
self,
segmentation_map: "np.ndarray",
instance_id_to_semantic_id: Optional[Dict[int, int]] = None,
ignore_index: Optional[int] = None,
reduce_labels: bool = False,
):
reduce_labels = reduce_labels if reduce_labels is not None else self.reduce_labels
ignore_index = ignore_index if ignore_index is not None else self.ignore_index
return convert_segmentation_map_to_binary_masks(
segmentation_map=segmentation_map,
instance_id_to_semantic_id=instance_id_to_semantic_id,
ignore_index=ignore_index,
reduce_labels=reduce_labels,
)
def __call__(self, images, segmentation_maps=None, **kwargs) -> BatchFeature:
return self.preprocess(images, segmentation_maps=segmentation_maps, **kwargs)
def _preprocess(
self,
image: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
size_divisor: int = None,
resample: PILImageResampling = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
):
if do_resize:
image = self.resize(image, size=size, size_divisor=size_divisor, resample=resample)
if do_rescale:
image = self.rescale(image, rescale_factor=rescale_factor)
if do_normalize:
image = self.normalize(image, mean=image_mean, std=image_std)
return image
def _preprocess_image(
self,
image: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
size_divisor: int = None,
resample: PILImageResampling = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.ndarray:
"""Preprocesses a single image."""
# All transformations expect numpy arrays.
image = to_numpy_array(image)
image = self._preprocess(
image=image,
do_resize=do_resize,
size=size,
size_divisor=size_divisor,
resample=resample,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
)
if data_format is not None:
image = to_channel_dimension_format(image, data_format)
return image
def _preprocess_mask(
self,
segmentation_map: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
size_divisor: int = 0,
) -> np.ndarray:
"""Preprocesses a single mask."""
segmentation_map = to_numpy_array(segmentation_map)
# Add channel dimension if missing - needed for certain transformations
added_channel_dim = False
if segmentation_map.ndim == 2:
added_channel_dim = True
segmentation_map = segmentation_map[None, ...]
# TODO: (Amy)
# Remork segmentation map processing to include reducing labels and resizing which doesn't
# drop segment IDs > 255.
segmentation_map = self._preprocess(
image=segmentation_map,
do_resize=do_resize,
resample=PILImageResampling.NEAREST,
size=size,
size_divisor=size_divisor,
do_rescale=False,
do_normalize=False,
)
# Remove extra channel dimension if added for processing
if added_channel_dim:
segmentation_map = segmentation_map.squeeze(0)
return segmentation_map
def preprocess(
self,
images: ImageInput,
segmentation_maps: Optional[ImageInput] = None,
instance_id_to_semantic_id: Optional[Dict[int, int]] = None,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
size_divisor: Optional[int] = None,
resample: PILImageResampling = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
ignore_index: Optional[int] = None,
reduce_labels: Optional[bool] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Union[str, ChannelDimension] = ChannelDimension.FIRST,
**kwargs,
) -> BatchFeature:
if "pad_and_return_pixel_mask" in kwargs:
warnings.warn(
"The `pad_and_return_pixel_mask` argument is deprecated and will be removed in a future version",
FutureWarning,
)
do_resize = do_resize if do_resize is not None else self.do_resize
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False, max_size=self._max_size)
size_divisor = size_divisor if size_divisor is not None else self.size_divisor
resample = resample if resample is not None else self.resample
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
ignore_index = ignore_index if ignore_index is not None else self.ignore_index
reduce_labels = reduce_labels if reduce_labels is not None else self.reduce_labels
if do_resize is not None and size is None or size_divisor is None:
raise ValueError("If `do_resize` is True, `size` and `size_divisor` must be provided.")
if do_rescale is not None and rescale_factor is None:
raise ValueError("If `do_rescale` is True, `rescale_factor` must be provided.")
if do_normalize is not None and (image_mean is None or image_std is None):
raise ValueError("If `do_normalize` is True, `image_mean` and `image_std` must be provided.")
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if segmentation_maps is not None and not valid_images(segmentation_maps):
raise ValueError(
"Invalid segmentation map type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if not is_batched(images):
images = [images]
segmentation_maps = [segmentation_maps] if segmentation_maps is not None else None
if segmentation_maps is not None and len(images) != len(segmentation_maps):
raise ValueError("Images and segmentation maps must have the same length.")
images = [
self._preprocess_image(
image,
do_resize=do_resize,
size=size,
size_divisor=size_divisor,
resample=resample,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
data_format=data_format,
)
for image in images
]
if segmentation_maps is not None:
segmentation_maps = [
self._preprocess_mask(segmentation_map, do_resize, size, size_divisor)
for segmentation_map in segmentation_maps
]
encoded_inputs = self.encode_inputs(
images, segmentation_maps, instance_id_to_semantic_id, ignore_index, reduce_labels, return_tensors
)
return encoded_inputs
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor._pad_image
def _pad_image(
self,
image: np.ndarray,
output_size: Tuple[int, int],
constant_values: Union[float, Iterable[float]] = 0,
data_format: Optional[ChannelDimension] = None,
) -> np.ndarray:
"""
Pad an image with zeros to the given size.
"""
input_height, input_width = get_image_size(image)
output_height, output_width = output_size
pad_bottom = output_height - input_height
pad_right = output_width - input_width
padding = ((0, pad_bottom), (0, pad_right))
padded_image = pad(
image, padding, mode=PaddingMode.CONSTANT, constant_values=constant_values, data_format=data_format
)
return padded_image
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.pad
def pad(
self,
images: List[np.ndarray],
constant_values: Union[float, Iterable[float]] = 0,
return_pixel_mask: bool = True,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Optional[ChannelDimension] = None,
) -> np.ndarray:
"""
Pads a batch of images to the bottom and right of the image with zeros to the size of largest height and width
in the batch and optionally returns their corresponding pixel mask.
Args:
image (`np.ndarray`):
Image to pad.
constant_values (`float` or `Iterable[float]`, *optional*):
The value to use for the padding if `mode` is `"constant"`.
return_pixel_mask (`bool`, *optional*, defaults to `True`):
Whether to return a pixel mask.
input_channel_dimension (`ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be inferred from the input image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
pad_size = get_max_height_width(images)
padded_images = [
self._pad_image(image, pad_size, constant_values=constant_values, data_format=data_format)
for image in images
]
data = {"pixel_values": padded_images}
if return_pixel_mask:
masks = [make_pixel_mask(image=image, output_size=pad_size) for image in images]
data["pixel_mask"] = masks
return BatchFeature(data=data, tensor_type=return_tensors)
def encode_inputs(
self,
pixel_values_list: List[ImageInput],
segmentation_maps: ImageInput = None,
instance_id_to_semantic_id: Optional[Union[List[Dict[int, int]], Dict[int, int]]] = None,
ignore_index: Optional[int] = None,
reduce_labels: bool = False,
return_tensors: Optional[Union[str, TensorType]] = None,
):
"""
Pad images up to the largest image in a batch and create a corresponding `pixel_mask`.
Mask2Former addresses semantic segmentation with a mask classification paradigm, thus input segmentation maps
will be converted to lists of binary masks and their respective labels. Let's see an example, assuming
`segmentation_maps = [[2,6,7,9]]`, the output will contain `mask_labels =
[[1,0,0,0],[0,1,0,0],[0,0,1,0],[0,0,0,1]]` (four binary masks) and `class_labels = [2,6,7,9]`, the labels for
each mask.
Args:
pixel_values_list (`List[ImageInput]`):
List of images (pixel values) to be padded. Each image should be a tensor of shape `(channels, height,
width)`.
segmentation_maps (`ImageInput`, *optional*):
The corresponding semantic segmentation maps with the pixel-wise annotations.
(`bool`, *optional*, defaults to `True`):
Whether or not to pad images up to the largest image in a batch and create a pixel mask.
If left to the default, will return a pixel mask that is:
- 1 for pixels that are real (i.e. **not masked**),
- 0 for pixels that are padding (i.e. **masked**).
instance_id_to_semantic_id (`List[Dict[int, int]]` or `Dict[int, int]`, *optional*):
A mapping between object instance ids and class ids. If passed, `segmentation_maps` is treated as an
instance segmentation map where each pixel represents an instance id. Can be provided as a single
dictionary with a global/dataset-level mapping or as a list of dictionaries (one per image), to map
instance ids in each image separately.
return_tensors (`str` or [`~file_utils.TensorType`], *optional*):
If set, will return tensors instead of NumPy arrays. If set to `'pt'`, return PyTorch `torch.Tensor`
objects.
Returns:
[`BatchFeature`]: A [`BatchFeature`] with the following fields:
- **pixel_values** -- Pixel values to be fed to a model.
- **pixel_mask** -- Pixel mask to be fed to a model (when `=True` or if `pixel_mask` is in
`self.model_input_names`).
- **mask_labels** -- Optional list of mask labels of shape `(labels, height, width)` to be fed to a model
(when `annotations` are provided).
- **class_labels** -- Optional list of class labels of shape `(labels)` to be fed to a model (when
`annotations` are provided). They identify the labels of `mask_labels`, e.g. the label of
`mask_labels[i][j]` if `class_labels[i][j]`.
"""
ignore_index = self.ignore_index if ignore_index is None else ignore_index
reduce_labels = self.reduce_labels if reduce_labels is None else reduce_labels
pixel_values_list = [to_numpy_array(pixel_values) for pixel_values in pixel_values_list]
encoded_inputs = self.pad(pixel_values_list, return_tensors=return_tensors)
if segmentation_maps is not None:
mask_labels = []
class_labels = []
pad_size = get_max_height_width(pixel_values_list)
# Convert to list of binary masks and labels
for idx, segmentation_map in enumerate(segmentation_maps):
segmentation_map = to_numpy_array(segmentation_map)
if isinstance(instance_id_to_semantic_id, list):
instance_id = instance_id_to_semantic_id[idx]
else:
instance_id = instance_id_to_semantic_id
# Use instance2class_id mapping per image
masks, classes = self.convert_segmentation_map_to_binary_masks(
segmentation_map, instance_id, ignore_index=ignore_index, reduce_labels=reduce_labels
)
# We add an axis to make them compatible with the transformations library
# this will be removed in the future
masks = [mask[None, ...] for mask in masks]
masks = [
self._pad_image(image=mask, output_size=pad_size, constant_values=ignore_index) for mask in masks
]
masks = np.concatenate(masks, axis=0)
mask_labels.append(torch.from_numpy(masks))
class_labels.append(torch.from_numpy(classes))
# we cannot batch them since they don't share a common class size
encoded_inputs["mask_labels"] = mask_labels
encoded_inputs["class_labels"] = class_labels
return encoded_inputs
def post_process_semantic_segmentation(
self, outputs, target_sizes: Optional[List[Tuple[int, int]]] = None
) -> "torch.Tensor":
"""
Converts the output of [`Mask2FormerForUniversalSegmentation`] into semantic segmentation maps. Only supports
PyTorch.
Args:
outputs ([`Mask2FormerForUniversalSegmentation`]):
Raw outputs of the model.
target_sizes (`List[Tuple[int, int]]`, *optional*):
List of length (batch_size), where each list item (`Tuple[int, int]]`) corresponds to the requested
final size (height, width) of each prediction. If left to None, predictions will not be resized.
Returns:
`List[torch.Tensor]`:
A list of length `batch_size`, where each item is a semantic segmentation map of shape (height, width)
corresponding to the target_sizes entry (if `target_sizes` is specified). Each entry of each
`torch.Tensor` correspond to a semantic class id.
"""
class_queries_logits = outputs.class_queries_logits # [batch_size, num_queries, num_classes+1]
masks_queries_logits = outputs.masks_queries_logits # [batch_size, num_queries, height, width]
# Scale back to preprocessed image size - (384, 384) for all models
masks_queries_logits = torch.nn.functional.interpolate(
masks_queries_logits, size=(384, 384), mode="bilinear", align_corners=False
)
# Remove the null class `[..., :-1]`
masks_classes = class_queries_logits.softmax(dim=-1)[..., :-1]
masks_probs = masks_queries_logits.sigmoid() # [batch_size, num_queries, height, width]
# Semantic segmentation logits of shape (batch_size, num_classes, height, width)
segmentation = torch.einsum("bqc, bqhw -> bchw", masks_classes, masks_probs)
batch_size = class_queries_logits.shape[0]
# Resize logits and compute semantic segmentation maps
if target_sizes is not None:
if batch_size != len(target_sizes):
raise ValueError(
"Make sure that you pass in as many target sizes as the batch dimension of the logits"
)
semantic_segmentation = []
for idx in range(batch_size):
resized_logits = torch.nn.functional.interpolate(
segmentation[idx].unsqueeze(dim=0), size=target_sizes[idx], mode="bilinear", align_corners=False
)
semantic_map = resized_logits[0].argmax(dim=0)
semantic_segmentation.append(semantic_map)
else:
semantic_segmentation = segmentation.argmax(dim=1)
semantic_segmentation = [semantic_segmentation[i] for i in range(semantic_segmentation.shape[0])]
return semantic_segmentation
def post_process_instance_segmentation(
self,
outputs,
threshold: float = 0.5,
mask_threshold: float = 0.5,
overlap_mask_area_threshold: float = 0.8,
target_sizes: Optional[List[Tuple[int, int]]] = None,
return_coco_annotation: Optional[bool] = False,
return_binary_maps: Optional[bool] = False,
) -> List[Dict]:
"""
Converts the output of [`Mask2FormerForUniversalSegmentationOutput`] into instance segmentation predictions.
Only supports PyTorch.
Args:
outputs ([`Mask2FormerForUniversalSegmentation`]):
Raw outputs of the model.
threshold (`float`, *optional*, defaults to 0.5):
The probability score threshold to keep predicted instance masks.
mask_threshold (`float`, *optional*, defaults to 0.5):
Threshold to use when turning the predicted masks into binary values.
overlap_mask_area_threshold (`float`, *optional*, defaults to 0.8):
The overlap mask area threshold to merge or discard small disconnected parts within each binary
instance mask.
target_sizes (`List[Tuple]`, *optional*):
List of length (batch_size), where each list item (`Tuple[int, int]]`) corresponds to the requested
final size (height, width) of each prediction. If left to None, predictions will not be resized.
return_coco_annotation (`bool`, *optional*, defaults to `False`):
If set to `True`, segmentation maps are returned in COCO run-length encoding (RLE) format.
return_binary_maps (`bool`, *optional*, defaults to `False`):
If set to `True`, segmentation maps are returned as a concatenated tensor of binary segmentation maps
(one per detected instance).
Returns:
`List[Dict]`: A list of dictionaries, one per image, each dictionary containing two keys:
- **segmentation** -- A tensor of shape `(height, width)` where each pixel represents a `segment_id` or
`List[List]` run-length encoding (RLE) of the segmentation map if return_coco_annotation is set to
`True`. Set to `None` if no mask if found above `threshold`.
- **segments_info** -- A dictionary that contains additional information on each segment.
- **id** -- An integer representing the `segment_id`.
- **label_id** -- An integer representing the label / semantic class id corresponding to `segment_id`.
- **score** -- Prediction score of segment with `segment_id`.
"""
if return_coco_annotation and return_binary_maps:
raise ValueError("return_coco_annotation and return_binary_maps can not be both set to True.")
# [batch_size, num_queries, num_classes+1]
class_queries_logits = outputs.class_queries_logits
# [batch_size, num_queries, height, width]
masks_queries_logits = outputs.masks_queries_logits
# Scale back to preprocessed image size - (384, 384) for all models
masks_queries_logits = torch.nn.functional.interpolate(
masks_queries_logits, size=(384, 384), mode="bilinear", align_corners=False
)
device = masks_queries_logits.device
num_classes = class_queries_logits.shape[-1] - 1
num_queries = class_queries_logits.shape[-2]
# Loop over items in batch size
results: List[Dict[str, TensorType]] = []
for i in range(class_queries_logits.shape[0]):
mask_pred = masks_queries_logits[i]
mask_cls = class_queries_logits[i]
scores = torch.nn.functional.softmax(mask_cls, dim=-1)[:, :-1]
labels = torch.arange(num_classes, device=device).unsqueeze(0).repeat(num_queries, 1).flatten(0, 1)
scores_per_image, topk_indices = scores.flatten(0, 1).topk(num_queries, sorted=False)
labels_per_image = labels[topk_indices]
topk_indices = torch.div(topk_indices, num_classes, rounding_mode="floor")
mask_pred = mask_pred[topk_indices]
pred_masks = (mask_pred > 0).float()
# Calculate average mask prob
mask_scores_per_image = (mask_pred.sigmoid().flatten(1) * pred_masks.flatten(1)).sum(1) / (
pred_masks.flatten(1).sum(1) + 1e-6
)
pred_scores = scores_per_image * mask_scores_per_image
pred_classes = labels_per_image
segmentation = torch.zeros((384, 384)) - 1
if target_sizes is not None:
segmentation = torch.zeros(target_sizes[i]) - 1
pred_masks = torch.nn.functional.interpolate(
pred_masks.unsqueeze(0), size=target_sizes[i], mode="nearest"
)[0]
instance_maps, segments = [], []
current_segment_id = 0
for j in range(num_queries):
score = pred_scores[j].item()
if not torch.all(pred_masks[j] == 0) and score >= threshold:
segmentation[pred_masks[j] == 1] = current_segment_id
segments.append(
{
"id": current_segment_id,
"label_id": pred_classes[j].item(),
"was_fused": False,
"score": round(score, 6),
}
)
current_segment_id += 1
instance_maps.append(pred_masks[j])
# Return segmentation map in run-length encoding (RLE) format
if return_coco_annotation:
segmentation = convert_segmentation_to_rle(segmentation)
# Return a concatenated tensor of binary instance maps
if return_binary_maps and len(instance_maps) != 0:
segmentation = torch.stack(instance_maps, dim=0)
results.append({"segmentation": segmentation, "segments_info": segments})
return results
def post_process_panoptic_segmentation(
self,
outputs,
threshold: float = 0.5,
mask_threshold: float = 0.5,
overlap_mask_area_threshold: float = 0.8,
label_ids_to_fuse: Optional[Set[int]] = None,
target_sizes: Optional[List[Tuple[int, int]]] = None,
) -> List[Dict]:
"""
Converts the output of [`Mask2FormerForUniversalSegmentationOutput`] into image panoptic segmentation
predictions. Only supports PyTorch.
Args:
outputs ([`Mask2FormerForUniversalSegmentationOutput`]):
The outputs from [`Mask2FormerForUniversalSegmentation`].
threshold (`float`, *optional*, defaults to 0.5):
The probability score threshold to keep predicted instance masks.
mask_threshold (`float`, *optional*, defaults to 0.5):
Threshold to use when turning the predicted masks into binary values.
overlap_mask_area_threshold (`float`, *optional*, defaults to 0.8):
The overlap mask area threshold to merge or discard small disconnected parts within each binary
instance mask.
label_ids_to_fuse (`Set[int]`, *optional*):
The labels in this state will have all their instances be fused together. For instance we could say
there can only be one sky in an image, but several persons, so the label ID for sky would be in that
set, but not the one for person.
target_sizes (`List[Tuple]`, *optional*):
List of length (batch_size), where each list item (`Tuple[int, int]]`) corresponds to the requested
final size (height, width) of each prediction in batch. If left to None, predictions will not be
resized.
Returns:
`List[Dict]`: A list of dictionaries, one per image, each dictionary containing two keys:
- **segmentation** -- a tensor of shape `(height, width)` where each pixel represents a `segment_id`, set
to `None` if no mask if found above `threshold`. If `target_sizes` is specified, segmentation is resized
to the corresponding `target_sizes` entry.
- **segments_info** -- A dictionary that contains additional information on each segment.
- **id** -- an integer representing the `segment_id`.
- **label_id** -- An integer representing the label / semantic class id corresponding to `segment_id`.
- **was_fused** -- a boolean, `True` if `label_id` was in `label_ids_to_fuse`, `False` otherwise.
Multiple instances of the same class / label were fused and assigned a single `segment_id`.
- **score** -- Prediction score of segment with `segment_id`.
"""
if label_ids_to_fuse is None:
logger.warning("`label_ids_to_fuse` unset. No instance will be fused.")
label_ids_to_fuse = set()
class_queries_logits = outputs.class_queries_logits # [batch_size, num_queries, num_classes+1]
masks_queries_logits = outputs.masks_queries_logits # [batch_size, num_queries, height, width]
# Scale back to preprocessed image size - (384, 384) for all models
masks_queries_logits = torch.nn.functional.interpolate(
masks_queries_logits, size=(384, 384), mode="bilinear", align_corners=False
)
batch_size = class_queries_logits.shape[0]
num_labels = class_queries_logits.shape[-1] - 1
mask_probs = masks_queries_logits.sigmoid() # [batch_size, num_queries, height, width]
# Predicted label and score of each query (batch_size, num_queries)
pred_scores, pred_labels = nn.functional.softmax(class_queries_logits, dim=-1).max(-1)
# Loop over items in batch size
results: List[Dict[str, TensorType]] = []
for i in range(batch_size):
mask_probs_item, pred_scores_item, pred_labels_item = remove_low_and_no_objects(
mask_probs[i], pred_scores[i], pred_labels[i], threshold, num_labels
)
# No mask found
if mask_probs_item.shape[0] <= 0:
height, width = target_sizes[i] if target_sizes is not None else mask_probs_item.shape[1:]
segmentation = torch.zeros((height, width)) - 1
results.append({"segmentation": segmentation, "segments_info": []})
continue
# Get segmentation map and segment information of batch item
target_size = target_sizes[i] if target_sizes is not None else None
segmentation, segments = compute_segments(
mask_probs=mask_probs_item,
pred_scores=pred_scores_item,
pred_labels=pred_labels_item,
mask_threshold=mask_threshold,
overlap_mask_area_threshold=overlap_mask_area_threshold,
label_ids_to_fuse=label_ids_to_fuse,
target_size=target_size,
)
results.append({"segmentation": segmentation, "segments_info": segments})
return results
| 50,612 | 43.989333 | 119 | py |
transformers | transformers-main/src/transformers/models/bart/modeling_flax_bart.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The Google Flax Team Authors And The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Flax Bart model."""
import math
import random
from functools import partial
from typing import Callable, Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
FlaxSeq2SeqQuestionAnsweringModelOutput,
FlaxSeq2SeqSequenceClassifierOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_bart import BartConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/bart-base"
_CONFIG_FOR_DOC = "BartConfig"
BART_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`BartConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
BART_INPUTS_DOCSTRING = r"""
Args:
input_ids (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
For translation and summarization training, `decoder_input_ids` should be provided. If no
`decoder_input_ids` is provided, the model will create this tensor by shifting the `input_ids` to the right
for denoising pre-training following the paper.
decoder_attention_mask (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should modify to your needs. See diagram 1 in [the
paper](https://arxiv.org/abs/1910.13461) for more information on the default strategy.
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
decoder_position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BART_ENCODE_INPUTS_DOCSTRING = r"""
Args:
input_ids (`jnp.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BART_DECODE_INPUTS_DOCSTRING = r"""
Args:
decoder_input_ids (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
For translation and summarization training, `decoder_input_ids` should be provided. If no
`decoder_input_ids` is provided, the model will create this tensor by shifting the `input_ids` to the right
for denoising pre-training following the paper.
encoder_outputs (`tuple(tuple(jnp.ndarray)`):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
encoder_attention_mask (`jnp.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_attention_mask (`jnp.ndarray` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should modify to your needs. See diagram 1 in [the
paper](https://arxiv.org/abs/1910.13461) for more information on the default strategy.
decoder_position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
past_key_values (`Dict[str, np.ndarray]`, *optional*, returned by `init_cache` or when passing previous `past_key_values`):
Dictionary of pre-computed hidden-states (key and values in the attention blocks) that can be used for fast
auto-regressive decoding. Pre-computed key and value hidden-states are of shape *[batch_size, max_length]*.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
def shift_tokens_right(input_ids: jnp.array, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = jnp.zeros_like(input_ids)
shifted_input_ids = shifted_input_ids.at[:, 1:].set(input_ids[:, :-1])
shifted_input_ids = shifted_input_ids.at[:, 0].set(decoder_start_token_id)
shifted_input_ids = jnp.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids
class FlaxBartAttention(nn.Module):
config: BartConfig
embed_dim: int
num_heads: int
dropout: float = 0.0
causal: bool = False
bias: bool = True
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self) -> None:
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {self.num_heads})."
)
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=self.bias,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.dropout_layer = nn.Dropout(rate=self.dropout)
if self.causal:
self.causal_mask = make_causal_mask(
jnp.ones((1, self.config.max_position_embeddings), dtype="bool"), dtype="bool"
)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.num_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.embed_dim,))
@nn.compact
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states: jnp.ndarray,
key_value_states: Optional[jnp.ndarray] = None,
attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
batch_size = hidden_states.shape[0]
# get query proj
query_states = self.q_proj(hidden_states)
# get key, value proj
if is_cross_attention:
# cross_attentions
key_states = self.k_proj(key_value_states)
value_states = self.v_proj(key_value_states)
else:
# self_attention
key_states = self.k_proj(hidden_states)
value_states = self.v_proj(hidden_states)
query_states = self._split_heads(query_states)
key_states = self._split_heads(key_states)
value_states = self._split_heads(value_states)
# handle cache prepare causal attention mask
if self.causal:
query_length, key_length = query_states.shape[1], key_states.shape[1]
if self.has_variable("cache", "cached_key"):
mask_shift = self.variables["cache"]["cache_index"]
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_mask = lax.dynamic_slice(
self.causal_mask, (0, 0, mask_shift, 0), (1, 1, query_length, max_decoder_length)
)
else:
causal_mask = self.causal_mask[:, :, :query_length, :key_length]
causal_mask = jnp.broadcast_to(causal_mask, (batch_size,) + causal_mask.shape[1:])
# combine masks if needed
if attention_mask is not None and self.causal:
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_mask.shape)
attention_mask = combine_masks(attention_mask, causal_mask)
elif self.causal:
attention_mask = causal_mask
elif attention_mask is not None:
attention_mask = jnp.expand_dims(attention_mask, axis=(-3, -2))
# During fast autoregressive decoding, we feed one position at a time,
# and cache the keys and values step by step.
if self.causal and (self.has_variable("cache", "cached_key") or init_cache):
key_states, value_states, attention_mask = self._concatenate_to_cache(
key_states, value_states, query_states, attention_mask
)
# Convert the boolean attention mask to an attention bias.
if attention_mask is not None:
# attention mask in the form of attention bias
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, jnp.finfo(self.dtype).min).astype(self.dtype),
)
else:
attention_bias = None
dropout_rng = None
if not deterministic and self.dropout > 0.0:
dropout_rng = self.make_rng("dropout")
attn_weights = dot_product_attention_weights(
query_states,
key_states,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.dropout,
broadcast_dropout=True,
deterministic=deterministic,
dtype=self.dtype,
precision=None,
)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value_states)
attn_output = self._merge_heads(attn_output)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights
class FlaxBartEncoderLayer(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32
def setup(self) -> None:
self.embed_dim = self.config.d_model
self.self_attn = FlaxBartAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.encoder_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.self_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout_layer = nn.Dropout(rate=self.config.activation_dropout)
self.fc1 = nn.Dense(
self.config.encoder_ffn_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.fc2 = nn.Dense(
self.embed_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.final_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: jnp.ndarray,
output_attentions: bool = True,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
residual = hidden_states
hidden_states, attn_weights = self.self_attn(hidden_states=hidden_states, attention_mask=attention_mask)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class FlaxBartEncoderLayerCollection(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxBartEncoderLayer(self.config, name=str(i), dtype=self.dtype) for i in range(self.config.encoder_layers)
]
self.layerdrop = self.config.encoder_layerdrop
def __call__(
self,
hidden_states,
attention_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for encoder_layer in self.layers:
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if not deterministic and (dropout_probability < self.layerdrop): # skip the layer
layer_outputs = (None, None)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
output_attentions,
deterministic,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = (hidden_states, all_hidden_states, all_attentions)
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
class FlaxBartDecoderLayer(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32
def setup(self) -> None:
self.embed_dim = self.config.d_model
self.self_attn = FlaxBartAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.decoder_attention_heads,
dropout=self.config.attention_dropout,
causal=True,
dtype=self.dtype,
)
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
self.activation_fn = ACT2FN[self.config.activation_function]
self.activation_dropout_layer = nn.Dropout(rate=self.config.activation_dropout)
self.self_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.encoder_attn = FlaxBartAttention(
config=self.config,
embed_dim=self.embed_dim,
num_heads=self.config.decoder_attention_heads,
dropout=self.config.attention_dropout,
dtype=self.dtype,
)
self.encoder_attn_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
self.fc1 = nn.Dense(
self.config.decoder_ffn_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.fc2 = nn.Dense(
self.embed_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.final_layer_norm = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
hidden_states: jnp.ndarray,
attention_mask: jnp.ndarray,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = True,
deterministic: bool = True,
) -> Tuple[jnp.ndarray]:
residual = hidden_states
# Self Attention
hidden_states, self_attn_weights = self.self_attn(
hidden_states=hidden_states, attention_mask=attention_mask, init_cache=init_cache
)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
hidden_states, cross_attn_weights = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
return outputs
class FlaxBartDecoderLayerCollection(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxBartDecoderLayer(self.config, name=str(i), dtype=self.dtype) for i in range(self.config.decoder_layers)
]
self.layerdrop = self.config.decoder_layerdrop
def __call__(
self,
hidden_states,
attention_mask,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
for decoder_layer in self.layers:
if output_hidden_states:
all_hidden_states += (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if not deterministic and (dropout_probability < self.layerdrop):
layer_outputs = (None, None, None)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
output_attentions=output_attentions,
deterministic=deterministic,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = [hidden_states, all_hidden_states, all_self_attns, all_cross_attentions]
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
class FlaxBartClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
config: BartConfig
inner_dim: int
num_classes: int
pooler_dropout: float
dtype: jnp.dtype = jnp.float32
def setup(self):
self.dense = nn.Dense(
self.inner_dim, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
self.dropout = nn.Dropout(rate=self.pooler_dropout)
self.out_proj = nn.Dense(
self.num_classes,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
def __call__(self, hidden_states: jnp.ndarray, deterministic: bool):
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
hidden_states = self.dense(hidden_states)
hidden_states = jnp.tanh(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
hidden_states = self.out_proj(hidden_states)
return hidden_states
class FlaxBartEncoder(nn.Module):
config: BartConfig
embed_tokens: nn.Embed
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
embed_dim = self.config.d_model
self.padding_idx = self.config.pad_token_id
self.max_source_positions = self.config.max_position_embeddings
self.embed_scale = math.sqrt(embed_dim) if self.config.scale_embedding else 1.0
# Bart is set up so that if padding_idx is specified then offset the embedding ids by 2
# and adjust num_embeddings appropriately. Other models don't have this hack
self.offset = 2
self.embed_positions = nn.Embed(
self.config.max_position_embeddings + self.offset,
embed_dim,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
dtype=self.dtype,
)
self.layers = FlaxBartEncoderLayerCollection(self.config, self.dtype)
self.layernorm_embedding = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
input_shape = input_ids.shape
input_ids = input_ids.reshape(-1, input_shape[-1])
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(position_ids + self.offset)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return outputs
return FlaxBaseModelOutput(
last_hidden_state=outputs.last_hidden_state,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class FlaxBartDecoder(nn.Module):
config: BartConfig
embed_tokens: nn.Embed
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.config.dropout)
embed_dim = self.config.d_model
self.padding_idx = self.config.pad_token_id
self.max_target_positions = self.config.max_position_embeddings
self.embed_scale = math.sqrt(self.config.d_model) if self.config.scale_embedding else 1.0
# Bart is set up so that if padding_idx is specified then offset the embedding ids by 2
# and adjust num_embeddings appropriately. Other models don't have this hack
self.offset = 2
self.embed_positions = nn.Embed(
self.config.max_position_embeddings + self.offset,
embed_dim,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
dtype=self.dtype,
)
self.layers = FlaxBartDecoderLayerCollection(self.config, self.dtype)
self.layernorm_embedding = nn.LayerNorm(dtype=self.dtype, epsilon=1e-05)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
input_shape = input_ids.shape
input_ids = input_ids.reshape(-1, input_shape[-1])
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
# embed positions
positions = self.embed_positions(position_ids + self.offset)
hidden_states = inputs_embeds + positions
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = self.dropout_layer(hidden_states, deterministic=deterministic)
outputs = self.layers(
hidden_states,
attention_mask,
encoder_hidden_states,
encoder_attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return outputs
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=outputs.last_hidden_state,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
class FlaxBartModule(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.shared = nn.Embed(
self.config.vocab_size,
self.config.d_model,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
dtype=self.dtype,
)
self.encoder = FlaxBartEncoder(self.config, dtype=self.dtype, embed_tokens=self.shared)
self.decoder = FlaxBartDecoder(self.config, dtype=self.dtype, embed_tokens=self.shared)
def _get_encoder_module(self):
return self.encoder
def _get_decoder_module(self):
return self.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return FlaxSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
class FlaxBartPreTrainedModel(FlaxPreTrainedModel):
config_class = BartConfig
base_model_prefix: str = "model"
module_class: nn.Module = None
def __init__(
self,
config: BartConfig,
input_shape: Tuple[int] = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
# make sure initialization pass will work for FlaxBartForSequenceClassificationModule
input_ids = input_ids.at[(..., -1)].set(self.config.eos_token_id)
attention_mask = jnp.ones_like(input_ids)
decoder_input_ids = input_ids
decoder_attention_mask = jnp.ones_like(input_ids)
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
decoder_position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(
rngs,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
)["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def init_cache(self, batch_size, max_length, encoder_outputs):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
encoder_outputs (`Union[FlaxBaseModelOutput, tuple(tuple(jnp.ndarray)]`):
`encoder_outputs` consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*:
`attentions`). `last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*)
is a sequence of hidden-states at the output of the last layer of the encoder. Used in the
cross-attention of the decoder.
"""
# init input variables to retrieve cache
decoder_input_ids = jnp.ones((batch_size, max_length), dtype="i4")
decoder_attention_mask = jnp.ones_like(decoder_input_ids)
decoder_position_ids = jnp.broadcast_to(
jnp.arange(jnp.atleast_2d(decoder_input_ids).shape[-1]), decoder_input_ids.shape
)
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
return decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
init_variables = self.module.init(
jax.random.PRNGKey(0),
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
init_cache=True,
method=_decoder_forward, # we only need to call the decoder to init the cache
)
return unfreeze(init_variables["cache"])
@add_start_docstrings(BART_ENCODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxBaseModelOutput, config_class=BartConfig)
def encode(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, FlaxBartForConditionalGeneration
>>> model = FlaxBartForConditionalGeneration.from_pretrained("facebook/bart-large-cnn")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large-cnn")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="jax")
>>> encoder_outputs = model.encode(**inputs)
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _encoder_forward(module, input_ids, attention_mask, position_ids, **kwargs):
encode_module = module._get_encoder_module()
return encode_module(input_ids, attention_mask, position_ids, **kwargs)
return self.module.apply(
{"params": params or self.params},
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
method=_encoder_forward,
)
@add_start_docstrings(BART_DECODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxBaseModelOutputWithPastAndCrossAttentions, config_class=BartConfig)
def decode(
self,
decoder_input_ids,
encoder_outputs,
encoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
past_key_values: dict = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoTokenizer, FlaxBartForConditionalGeneration
>>> model = FlaxBartForConditionalGeneration.from_pretrained("facebook/bart-large-cnn")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large-cnn")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="jax")
>>> encoder_outputs = model.encode(**inputs)
>>> decoder_start_token_id = model.config.decoder_start_token_id
>>> decoder_input_ids = jnp.ones((inputs.input_ids.shape[0], 1), dtype="i4") * decoder_start_token_id
>>> outputs = model.decode(decoder_input_ids, encoder_outputs)
>>> last_decoder_hidden_states = outputs.last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
encoder_hidden_states = encoder_outputs[0]
if encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
batch_size, sequence_length = decoder_input_ids.shape
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones((batch_size, sequence_length))
if decoder_position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `decoder_position_ids` when passing `past_key_values`.")
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be
# passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that
# it can be changed by FlaxBartAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
return decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
outputs = self.module.apply(
inputs,
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=jnp.array(encoder_attention_mask, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
mutable=mutable,
method=_decoder_forward,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past = outputs
outputs["past_key_values"] = unfreeze(past["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past = outputs
outputs = outputs[:1] + (unfreeze(past["cache"]),) + outputs[1:]
return outputs
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
def __call__(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
decoder_input_ids: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
# prepare encoder inputs
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# prepare decoder inputs
if decoder_input_ids is None:
decoder_input_ids = shift_tokens_right(
input_ids, self.config.pad_token_id, decoder_start_token_id=self.config.decoder_start_token_id
)
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones_like(decoder_input_ids)
if decoder_position_ids is None:
batch_size, sequence_length = decoder_input_ids.shape
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {"dropout": dropout_rng} if dropout_rng is not None else {}
return self.module.apply(
{"params": params or self.params},
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
)
@add_start_docstrings(
"The bare Bart Model transformer outputting raw hidden-states without any specific head on top.",
BART_START_DOCSTRING,
)
class FlaxBartModel(FlaxBartPreTrainedModel):
config: BartConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
module_class = FlaxBartModule
append_call_sample_docstring(FlaxBartModel, _CHECKPOINT_FOR_DOC, FlaxSeq2SeqModelOutput, _CONFIG_FOR_DOC)
class FlaxBartForConditionalGenerationModule(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32
bias_init: Callable[..., jnp.ndarray] = jax.nn.initializers.zeros
def setup(self):
self.model = FlaxBartModule(config=self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.model.shared.num_embeddings,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.final_logits_bias = self.param("final_logits_bias", self.bias_init, (1, self.model.shared.num_embeddings))
def _get_encoder_module(self):
return self.model.encoder
def _get_decoder_module(self):
return self.model.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
position_ids=position_ids,
decoder_position_ids=decoder_position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = self.model.variables["params"]["shared"]["embedding"]
lm_logits = self.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = self.lm_head(hidden_states)
lm_logits += jax.lax.stop_gradient(self.final_logits_bias.astype(self.dtype))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return output
return FlaxSeq2SeqLMOutput(
logits=lm_logits,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"The BART Model with a language modeling head. Can be used for summarization.", BART_START_DOCSTRING
)
class FlaxBartForConditionalGeneration(FlaxBartPreTrainedModel):
module_class = FlaxBartForConditionalGenerationModule
dtype: jnp.dtype = jnp.float32
@add_start_docstrings(BART_DECODE_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=FlaxCausalLMOutputWithCrossAttentions, config_class=BartConfig)
def decode(
self,
decoder_input_ids,
encoder_outputs,
encoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_attention_mask: Optional[jnp.ndarray] = None,
decoder_position_ids: Optional[jnp.ndarray] = None,
past_key_values: dict = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
dropout_rng: PRNGKey = None,
):
r"""
Returns:
Example:
```python
>>> import jax.numpy as jnp
>>> from transformers import AutoTokenizer, FlaxBartForConditionalGeneration
>>> model = FlaxBartForConditionalGeneration.from_pretrained("facebook/bart-large-cnn")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large-cnn")
>>> text = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer(text, max_length=1024, return_tensors="jax")
>>> encoder_outputs = model.encode(**inputs)
>>> decoder_start_token_id = model.config.decoder_start_token_id
>>> decoder_input_ids = jnp.ones((inputs.input_ids.shape[0], 1), dtype="i4") * decoder_start_token_id
>>> outputs = model.decode(decoder_input_ids, encoder_outputs)
>>> logits = outputs.logits
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
encoder_hidden_states = encoder_outputs[0]
if encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
batch_size, sequence_length = decoder_input_ids.shape
if decoder_attention_mask is None:
decoder_attention_mask = jnp.ones((batch_size, sequence_length))
if decoder_position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `decoder_position_ids` when passing `past_key_values`.")
decoder_position_ids = jnp.broadcast_to(
jnp.arange(sequence_length)[None, :], (batch_size, sequence_length)
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be
# passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that
# it can be changed by FlaxBartAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
def _decoder_forward(module, decoder_input_ids, decoder_attention_mask, decoder_position_ids, **kwargs):
decoder_module = module._get_decoder_module()
outputs = decoder_module(
decoder_input_ids,
decoder_attention_mask,
decoder_position_ids,
**kwargs,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = module.model.variables["params"]["shared"]["embedding"]
lm_logits = module.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = module.lm_head(hidden_states)
lm_logits += module.final_logits_bias.astype(self.dtype)
return lm_logits, outputs
outputs = self.module.apply(
inputs,
decoder_input_ids=jnp.array(decoder_input_ids, dtype="i4"),
decoder_attention_mask=jnp.array(decoder_attention_mask, dtype="i4"),
decoder_position_ids=jnp.array(decoder_position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=jnp.array(encoder_attention_mask, dtype="i4"),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
mutable=mutable,
method=_decoder_forward,
)
if past_key_values is None:
lm_logits, decoder_outputs = outputs
else:
(lm_logits, decoder_outputs), past = outputs
if return_dict:
outputs = FlaxCausalLMOutputWithCrossAttentions(
logits=lm_logits,
hidden_states=decoder_outputs.hidden_states,
attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
)
else:
outputs = (lm_logits,) + decoder_outputs[1:]
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs["past_key_values"] = unfreeze(past["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs = outputs[:1] + (unfreeze(past["cache"]),) + outputs[1:]
return outputs
def prepare_inputs_for_generation(
self,
decoder_input_ids,
max_length,
attention_mask: Optional[jnp.DeviceArray] = None,
decoder_attention_mask: Optional[jnp.DeviceArray] = None,
encoder_outputs=None,
**kwargs,
):
# initializing the cache
batch_size, seq_length = decoder_input_ids.shape
past_key_values = self.init_cache(batch_size, max_length, encoder_outputs)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since the decoder uses a causal mask, those positions are masked anyways.
# Thus we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if decoder_attention_mask is not None:
position_ids = decoder_attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, decoder_attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"encoder_outputs": encoder_outputs,
"encoder_attention_mask": attention_mask,
"decoder_attention_mask": extended_attention_mask,
"decoder_position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["decoder_position_ids"] = model_kwargs["decoder_position_ids"][:, -1:] + 1
return model_kwargs
FLAX_BART_CONDITIONAL_GENERATION_DOCSTRING = """
Returns:
Summarization example:
```python
>>> from transformers import AutoTokenizer, FlaxBartForConditionalGeneration
>>> model = FlaxBartForConditionalGeneration.from_pretrained("facebook/bart-large-cnn")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large-cnn")
>>> ARTICLE_TO_SUMMARIZE = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer([ARTICLE_TO_SUMMARIZE], max_length=1024, return_tensors="np")
>>> # Generate Summary
>>> summary_ids = model.generate(inputs["input_ids"]).sequences
>>> print(tokenizer.batch_decode(summary_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False))
```
Mask filling example:
```python
>>> import jax
>>> from transformers import AutoTokenizer, FlaxBartForConditionalGeneration
>>> model = FlaxBartForConditionalGeneration.from_pretrained("facebook/bart-large")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large")
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> input_ids = tokenizer([TXT], return_tensors="jax")["input_ids"]
>>> logits = model(input_ids).logits
>>> masked_index = (input_ids[0] == tokenizer.mask_token_id).nonzero()[0].item()
>>> probs = jax.nn.softmax(logits[0, masked_index], axis=0)
>>> values, predictions = jax.lax.top_k(probs, k=1)
>>> tokenizer.decode(predictions).split()
```
"""
overwrite_call_docstring(
FlaxBartForConditionalGeneration, BART_INPUTS_DOCSTRING + FLAX_BART_CONDITIONAL_GENERATION_DOCSTRING
)
append_replace_return_docstrings(
FlaxBartForConditionalGeneration, output_type=FlaxSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC
)
class FlaxBartForSequenceClassificationModule(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32
num_labels: Optional[int] = None
def setup(self):
self.model = FlaxBartModule(config=self.config, dtype=self.dtype)
self.classification_head = FlaxBartClassificationHead(
config=self.config,
inner_dim=self.config.d_model,
num_classes=self.num_labels if self.num_labels is not None else self.config.num_labels,
pooler_dropout=self.config.classifier_dropout,
)
def _get_encoder_module(self):
return self.model.encoder
def _get_decoder_module(self):
return self.model.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
position_ids=position_ids,
decoder_position_ids=decoder_position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
hidden_states = outputs[0] # last hidden state
eos_mask = jnp.where(input_ids == self.config.eos_token_id, 1, 0)
# The first condition is necessary to overcome jax._src.errors.ConcretizationTypeError during JIT compilation
if type(eos_mask) != jax.interpreters.partial_eval.DynamicJaxprTracer:
if len(jnp.unique(eos_mask.sum(1))) > 1:
raise ValueError("All examples must have the same number of <eos> tokens.")
if any(eos_mask.sum(1) == 0):
raise ValueError("There are missing <eos> tokens in input_ids")
# Ensure to keep 1 only for the last <eos> token for each example
eos_mask_noised = eos_mask + jnp.arange(eos_mask.shape[1]) * 1e-6
eos_mask = jnp.where(eos_mask_noised == eos_mask_noised.max(1).reshape(-1, 1), 1, 0)
sentence_representation = jnp.einsum("ijk, ij -> ijk", hidden_states, eos_mask).sum(1)
logits = self.classification_head(sentence_representation, deterministic=deterministic)
if not return_dict:
output = (logits,) + outputs[1:]
return output
return FlaxSeq2SeqSequenceClassifierOutput(
logits=logits,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"""
Bart model with a sequence classification/head on top (a linear layer on top of the pooled output) e.g. for GLUE
tasks.
""",
BART_START_DOCSTRING,
)
class FlaxBartForSequenceClassification(FlaxBartPreTrainedModel):
module_class = FlaxBartForSequenceClassificationModule
dtype = jnp.float32
append_call_sample_docstring(
FlaxBartForSequenceClassification,
_CHECKPOINT_FOR_DOC,
FlaxSeq2SeqSequenceClassifierOutput,
_CONFIG_FOR_DOC,
)
class FlaxBartForQuestionAnsweringModule(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32
num_labels = 2
def setup(self):
self.model = FlaxBartModule(config=self.config, dtype=self.dtype)
self.qa_outputs = nn.Dense(
self.num_labels, dtype=self.dtype, kernel_init=jax.nn.initializers.normal(self.config.init_std)
)
def _get_encoder_module(self):
return self.model.encoder
def _get_decoder_module(self):
return self.model.decoder
def __call__(
self,
input_ids,
attention_mask,
decoder_input_ids,
decoder_attention_mask,
position_ids,
decoder_position_ids,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
position_ids=position_ids,
decoder_position_ids=decoder_position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=deterministic,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = jnp.split(logits, logits.shape[-1], axis=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
if not return_dict:
output = (start_logits, end_logits) + outputs[1:]
return output
return FlaxSeq2SeqQuestionAnsweringModelOutput(
start_logits=start_logits,
end_logits=end_logits,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"""
BART Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layer on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
BART_START_DOCSTRING,
)
class FlaxBartForQuestionAnswering(FlaxBartPreTrainedModel):
module_class = FlaxBartForQuestionAnsweringModule
dtype = jnp.float32
append_call_sample_docstring(
FlaxBartForQuestionAnswering,
_CHECKPOINT_FOR_DOC,
FlaxSeq2SeqQuestionAnsweringModelOutput,
_CONFIG_FOR_DOC,
)
class FlaxBartDecoderPreTrainedModel(FlaxPreTrainedModel):
config_class = BartConfig
base_model_prefix: str = "model"
module_class: nn.Module = None
def __init__(
self,
config: BartConfig,
input_shape: Tuple[int] = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
config.is_decoder = True
config.is_encoder_decoder = False
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_ids)
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
encoder_hidden_states = jnp.zeros(input_shape + (self.config.d_model,))
encoder_attention_mask = attention_mask
module_init_outputs = self.module.init(
rngs,
input_ids,
attention_mask,
position_ids,
encoder_hidden_states,
encoder_attention_mask,
return_dict=False,
)
return module_init_outputs["params"]
def init_cache(self, batch_size, max_length):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
"""
# init input variables to retrieve cache
input_ids = jnp.ones((batch_size, max_length), dtype="i4")
attention_mask = jnp.ones_like(input_ids, dtype="i4")
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
init_variables = self.module.init(
jax.random.PRNGKey(0), input_ids, attention_mask, position_ids, return_dict=False, init_cache=True
)
return unfreeze(init_variables["cache"])
@add_start_docstrings_to_model_forward(BART_DECODE_INPUTS_DOCSTRING)
def __call__(
self,
input_ids: jnp.ndarray,
attention_mask: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
train: bool = False,
params: dict = None,
past_key_values: dict = None,
dropout_rng: PRNGKey = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
if encoder_hidden_states is not None and encoder_attention_mask is None:
batch_size, sequence_length = encoder_hidden_states.shape[:2]
encoder_attention_mask = jnp.ones((batch_size, sequence_length))
# prepare decoder inputs
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if position_ids is None:
batch_size, sequence_length = input_ids.shape
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {"dropout": dropout_rng} if dropout_rng is not None else {}
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be passed
# down to ensure cache is used. It has to be made sure that cache is marked as mutable so that it can be
# changed by FlaxBartAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
outputs = self.module.apply(
inputs,
input_ids=jnp.array(input_ids, dtype="i4"),
attention_mask=jnp.array(attention_mask, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
deterministic=not train,
rngs=rngs,
mutable=mutable,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past_key_values = outputs
outputs["past_key_values"] = unfreeze(past_key_values["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past_key_values = outputs
outputs = outputs[:1] + (unfreeze(past_key_values["cache"]),) + outputs[1:]
return outputs
class FlaxBartDecoderWrapper(nn.Module):
"""
This wrapper class is a helper class to correctly load pretrained checkpoints when the causal language model is
used in combination with the [`EncoderDecoderModel`] framework.
"""
config: BartConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
embed_dim = self.config.d_model
embed_tokens = nn.Embed(
self.config.vocab_size,
embed_dim,
embedding_init=jax.nn.initializers.normal(self.config.init_std),
dtype=self.dtype,
)
self.decoder = FlaxBartDecoder(config=self.config, embed_tokens=embed_tokens, dtype=self.dtype)
def __call__(self, *args, **kwargs):
return self.decoder(*args, **kwargs)
class FlaxBartForCausalLMModule(nn.Module):
config: BartConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.model = FlaxBartDecoderWrapper(config=self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.config.vocab_size,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
deterministic: bool = True,
):
outputs = self.model(
input_ids,
attention_mask,
position_ids,
encoder_hidden_states,
encoder_attention_mask,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = self.model.variables["params"]["decoder"]["embed_tokens"]["embedding"]
lm_logits = self.lm_head.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
lm_logits = self.lm_head(hidden_states)
if not return_dict:
return (lm_logits,) + outputs[1:]
return FlaxCausalLMOutputWithCrossAttentions(
logits=lm_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Bart Decoder Model with a language modeling head on top (linear layer with weights tied to the input embeddings)
e.g for autoregressive tasks.
""",
BART_START_DOCSTRING,
)
class FlaxBartForCausalLM(FlaxBartDecoderPreTrainedModel):
module_class = FlaxBartForCausalLMModule
def prepare_inputs_for_generation(self, input_ids, max_length, attention_mask: Optional[jnp.DeviceArray] = None):
# initializing the cache
batch_size, seq_length = input_ids.shape
past_key_values = self.init_cache(batch_size, max_length)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since the decoder uses a causal mask, those positions are masked anyway.
# Thus, we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if attention_mask is not None:
position_ids = attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"attention_mask": extended_attention_mask,
"position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["position_ids"] = model_kwargs["position_ids"][:, -1:] + 1
return model_kwargs
append_call_sample_docstring(
FlaxBartForCausalLM,
_CHECKPOINT_FOR_DOC,
FlaxCausalLMOutputWithCrossAttentions,
_CONFIG_FOR_DOC,
)
| 82,723 | 40.44489 | 206 | py |
transformers | transformers-main/src/transformers/models/bart/modeling_tf_bart.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 Bart model."""
from __future__ import annotations
import random
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
TFSeq2SeqSequenceClassifierOutput,
)
# Public API
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_bart import BartConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/bart-large"
_CONFIG_FOR_DOC = "BartConfig"
LARGE_NEGATIVE = -1e8
def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int, decoder_start_token_id: int):
pad_token_id = tf.cast(pad_token_id, input_ids.dtype)
decoder_start_token_id = tf.cast(decoder_start_token_id, input_ids.dtype)
start_tokens = tf.fill(
(shape_list(input_ids)[0], 1), tf.convert_to_tensor(decoder_start_token_id, input_ids.dtype)
)
shifted_input_ids = tf.concat([start_tokens, input_ids[:, :-1]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100,
tf.fill(shape_list(shifted_input_ids), tf.convert_to_tensor(pad_token_id, input_ids.dtype)),
shifted_input_ids,
)
# "Verify that `labels` has only positive values and -100"
assert_gte0 = tf.debugging.assert_greater_equal(shifted_input_ids, tf.constant(0, dtype=input_ids.dtype))
# Make sure the assertion op is called by wrapping the result in an identity no-op
with tf.control_dependencies([assert_gte0]):
shifted_input_ids = tf.identity(shifted_input_ids)
return shifted_input_ids
def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz = input_ids_shape[0]
tgt_len = input_ids_shape[1]
mask = tf.ones((tgt_len, tgt_len)) * LARGE_NEGATIVE
mask_cond = tf.range(shape_list(mask)[-1])
mask = tf.where(mask_cond < tf.reshape(mask_cond + 1, (shape_list(mask)[-1], 1)), 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length)), mask], axis=-1)
return tf.tile(mask[None, None, :, :], (bsz, 1, 1, 1))
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE
class TFBartLearnedPositionalEmbedding(tf.keras.layers.Embedding):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int, **kwargs):
# Bart is set up so that if padding_idx is specified then offset the embedding ids by 2
# and adjust num_embeddings appropriately. Other models don't have this hack
self.offset = 2
super().__init__(num_embeddings + self.offset, embedding_dim, **kwargs)
def call(
self,
input_shape: Optional[tf.TensorShape] = None,
past_key_values_length: int = 0,
position_ids: tf.Tensor | None = None,
):
"""Input is expected to be of size [bsz x seqlen]."""
if position_ids is None:
seq_len = input_shape[1]
position_ids = tf.range(seq_len, delta=1, name="range")
position_ids += past_key_values_length
offset_dtype = position_ids.dtype if isinstance(position_ids, tf.Tensor) else tf.int32
return super().call(position_ids + tf.constant(self.offset, dtype=offset_dtype))
class TFBartAttention(tf.keras.layers.Layer):
"""Multi-headed attention from "Attention Is All You Need"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = tf.keras.layers.Dropout(dropout)
self.head_dim = embed_dim // num_heads
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="k_proj")
self.q_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="q_proj")
self.v_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="v_proj")
self.out_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="out_proj")
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
return tf.transpose(tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim)), (0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
key_value_states: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
attention_mask: tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor, tf.Tensor | None]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = shape_list(hidden_states)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = tf.reshape(self._shape(query_states, tgt_len, bsz), proj_shape)
key_states = tf.reshape(key_states, proj_shape)
value_states = tf.reshape(value_states, proj_shape)
src_len = shape_list(key_states)[1]
attn_weights = tf.matmul(query_states, key_states, transpose_b=True)
tf.debugging.assert_equal(
shape_list(attn_weights),
[bsz * self.num_heads, tgt_len, src_len],
message=(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {shape_list(attn_weights)}"
),
)
if attention_mask is not None:
tf.debugging.assert_equal(
shape_list(attention_mask),
[bsz, 1, tgt_len, src_len],
message=(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is"
f" {shape_list(attention_mask)}"
),
)
attention_mask = tf.cast(attention_mask, dtype=attn_weights.dtype)
attn_weights = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len)) + attention_mask
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_weights = stable_softmax(attn_weights, axis=-1)
if layer_head_mask is not None:
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=(
f"Head mask for a single layer should be of size {(self.num_heads)}, but is"
f" {shape_list(layer_head_mask)}"
),
)
attn_weights = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
attn_weights, (bsz, self.num_heads, tgt_len, src_len)
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_probs = self.dropout(attn_weights, training=training)
attn_output = tf.matmul(attn_probs, value_states)
tf.debugging.assert_equal(
shape_list(attn_output),
[bsz * self.num_heads, tgt_len, self.head_dim],
message=(
f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is"
f" {shape_list(attn_output)}"
),
)
attn_output = tf.transpose(
tf.reshape(attn_output, (bsz, self.num_heads, tgt_len, self.head_dim)), (0, 2, 1, 3)
)
attn_output = tf.reshape(attn_output, (bsz, tgt_len, embed_dim))
attn_output = self.out_proj(attn_output)
attn_weights: tf.Tensor = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len))
return attn_output, attn_weights, past_key_value
class TFBartEncoderLayer(tf.keras.layers.Layer):
def __init__(self, config: BartConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFBartAttention(
self.embed_dim, config.encoder_attention_heads, dropout=config.attention_dropout, name="self_attn"
)
self.self_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.fc1 = tf.keras.layers.Dense(config.encoder_ffn_dim, name="fc1")
self.fc2 = tf.keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: np.ndarray | tf.Tensor | None,
layer_head_mask: tf.Tensor | None,
training: Optional[bool] = False,
) -> tf.Tensor:
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`tf.Tensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`tf.Tensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`
"""
residual = hidden_states
hidden_states, self_attn_weights, _ = self.self_attn(
hidden_states=hidden_states, attention_mask=attention_mask, layer_head_mask=layer_head_mask
)
tf.debugging.assert_equal(
shape_list(hidden_states),
shape_list(residual),
message=f"Self attn modified the shape of query {shape_list(residual)} to {shape_list(hidden_states)}",
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
return hidden_states, self_attn_weights
class TFBartDecoderLayer(tf.keras.layers.Layer):
def __init__(self, config: BartConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFBartAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
name="self_attn",
is_decoder=True,
)
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.self_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.encoder_attn = TFBartAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
name="encoder_attn",
is_decoder=True,
)
self.encoder_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="encoder_attn_layer_norm")
self.fc1 = tf.keras.layers.Dense(config.decoder_ffn_dim, name="fc1")
self.fc2 = tf.keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
layer_head_mask: tf.Tensor | None = None,
cross_attn_layer_head_mask: tf.Tensor | None = None,
past_key_value: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor, tf.Tensor, Tuple[Tuple[tf.Tensor]]]:
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`tf.Tensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
encoder_hidden_states (`tf.Tensor`):
cross attention input to the layer of shape `(batch, seq_len, embed_dim)`
encoder_attention_mask (`tf.Tensor`): encoder attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`tf.Tensor`): mask for attention heads in a given layer of size
`(decoder_attention_heads,)`
cross_attn_layer_head_mask (`tf.Tensor`): mask for heads of the cross-attention module.
`(decoder_attention_heads,)`
past_key_value (`Tuple(tf.Tensor)`): cached past key and value projection states
"""
residual = hidden_states
# Self Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
return (
hidden_states,
self_attn_weights,
cross_attn_weights,
present_key_value,
)
class TFBartClassificationHead(tf.keras.layers.Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, inner_dim: int, num_classes: int, pooler_dropout: float, name: str, **kwargs):
super().__init__(name=name, **kwargs)
self.dense = tf.keras.layers.Dense(inner_dim, name="dense")
self.dropout = tf.keras.layers.Dropout(pooler_dropout)
self.out_proj = tf.keras.layers.Dense(num_classes, name="out_proj")
def call(self, inputs):
hidden_states = self.dropout(inputs)
hidden_states = self.dense(hidden_states)
hidden_states = tf.keras.activations.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
class TFBartPretrainedModel(TFPreTrainedModel):
config_class = BartConfig
base_model_prefix = "model"
@property
def dummy_inputs(self):
dummy_inputs = super().dummy_inputs
# Dummy inputs should not contain the default val of 1
# as this is the padding token and some assertions check it
dummy_inputs["input_ids"] = dummy_inputs["input_ids"] * 2
if "decoder_input_ids" in dummy_inputs:
dummy_inputs["decoder_input_ids"] = dummy_inputs["decoder_input_ids"] * 2
return dummy_inputs
BART_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Args:
config ([`BartConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
BART_GENERATION_EXAMPLE = r"""
Summarization example:
```python
>>> from transformers import AutoTokenizer, TFBartForConditionalGeneration
>>> model = TFBartForConditionalGeneration.from_pretrained("facebook/bart-large")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large")
>>> ARTICLE_TO_SUMMARIZE = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer([ARTICLE_TO_SUMMARIZE], max_length=1024, return_tensors="tf")
>>> # Generate Summary
>>> summary_ids = model.generate(inputs["input_ids"], num_beams=4, max_length=5)
>>> print(tokenizer.batch_decode(summary_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False))
```
Mask filling example:
```python
>>> from transformers import AutoTokenizer, TFBartForConditionalGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large")
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> model = TFBartForConditionalGeneration.from_pretrained("facebook/bart-large")
>>> input_ids = tokenizer([TXT], return_tensors="tf")["input_ids"]
>>> logits = model(input_ids).logits
>>> probs = tf.nn.softmax(logits[0])
>>> # probs[5] is associated with the mask token
```
"""
BART_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
Bart uses the `eos_token_id` as the starting token for `decoder_input_ids` generation. If `past_key_values`
is used, optionally only the last `decoder_input_ids` have to be input (see `past_key_values`).
For translation and summarization training, `decoder_input_ids` should be provided. If no
`decoder_input_ids` is provided, the model will create this tensor by shifting the `input_ids` to the right
for denoising pre-training following the paper.
decoder_attention_mask (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
will be made by default and ignore pad tokens. It is not recommended to set this for most use cases.
decoder_position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
head_mask (`tf.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tf.FloatTensor`, *optional*):
hidden states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
of shape `(batch_size, sequence_length, hidden_size)` is a sequence of
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@keras_serializable
class TFBartEncoder(tf.keras.layers.Layer):
config_class = BartConfig
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
[`TFBartEncoderLayer`].
Args:
config: BartConfig
"""
def __init__(self, config: BartConfig, embed_tokens: Optional[tf.keras.layers.Embedding] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.layerdrop = config.encoder_layerdrop
self.padding_idx = config.pad_token_id
self.max_source_positions = config.max_position_embeddings
self.embed_scale = tf.math.sqrt(float(config.d_model)) if config.scale_embedding else 1.0
self.embed_tokens = embed_tokens
self.embed_positions = TFBartLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
name="embed_positions",
)
self.layers = [TFBartEncoderLayer(config, name=f"layers.{i}") for i in range(config.encoder_layers)]
self.layernorm_embedding = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_embedding")
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`tf.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, `optional):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs_embeds is None:
# if `self.embed_tokens.load_weight_prefix` is set, runs the embedding operation with the correct name
# scope, so that its weights are registered with the desired name for loading/storing. When `tf.name_scope`
# is used with a name ending in `/`, that name replaces the current name scope.
# (embeddings with tf.name_scope: self.embed_tokens.load_weight_prefix/self.embed_tokens.name/embeddings:0)
context = []
if hasattr(self.embed_tokens, "load_weight_prefix"):
context.append(tf.name_scope(self.embed_tokens.load_weight_prefix + "/"))
with ContextManagers(context):
check_embeddings_within_bounds(input_ids, self.embed_tokens.input_dim)
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(input_shape)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
# check attention mask and invert
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _expand_mask(attention_mask)
else:
attention_mask = None
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
tf.debugging.assert_equal(
shape_list(head_mask)[0],
len(self.layers),
message=(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {shape_list(head_mask)[0]}."
),
)
# encoder layers
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop): # skip the layer
continue
hidden_states, attn = encoder_layer(
hidden_states,
attention_mask,
head_mask[idx] if head_mask is not None else None,
)
if output_attentions:
all_attentions += (attn,)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
@keras_serializable
class TFBartDecoder(tf.keras.layers.Layer):
config_class = BartConfig
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`TFBartDecoderLayer`]
Args:
config: BartConfig
embed_tokens: output embedding
"""
def __init__(self, config: BartConfig, embed_tokens: Optional[tf.keras.layers.Embedding] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.padding_idx = config.pad_token_id
self.embed_tokens = embed_tokens
self.layerdrop = config.decoder_layerdrop
self.embed_positions = TFBartLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
name="embed_positions",
)
self.embed_scale = tf.math.sqrt(float(config.d_model)) if config.scale_embedding else 1.0
self.layers = [TFBartDecoderLayer(config, name=f"layers.{i}") for i in range(config.decoder_layers)]
self.layernorm_embedding = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_embedding")
self.dropout = tf.keras.layers.Dropout(config.dropout)
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
cross_attn_head_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithPastAndCrossAttentions, Tuple[tf.Tensor]]:
r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each decoder input sequence tokens in the position embeddings. Selected in the
range `[0, config.max_position_embeddings - 1]`.
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`tf.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers` with each tuple having 2 tuples each of which has 2 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden-states of the attention blocks. Can be used to speed up
decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`. inputs_embeds (`tf.Tensor` of shape
`(batch_size, sequence_length, hidden_size)`, *optional*): Optionally, instead of passing `input_ids`
you can choose to directly pass an embedded representation. This is useful if you want more control
over how to convert `input_ids` indices into associated vectors than the model's internal embedding
lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
past_key_values_length = shape_list(past_key_values[0][0])[2] if past_key_values is not None else 0
# embed positions
if position_ids is None:
positions = self.embed_positions(input_shape, past_key_values_length)
else:
positions = self.embed_positions(input_shape, position_ids=position_ids)
if inputs_embeds is None:
# if `self.embed_tokens.load_weight_prefix` is set, runs the embedding operation with the correct name
# scope, so that its weights are registered with the desired name for loading/storing. When `tf.name_scope`
# is used with a name ending in `/`, that name replaces the current name scope.
# (embeddings with tf.name_scope: self.embed_tokens.load_weight_prefix/self.embed_tokens.name/embeddings:0)
context = []
if hasattr(self.embed_tokens, "load_weight_prefix"):
context.append(tf.name_scope(self.embed_tokens.load_weight_prefix + "/"))
with ContextManagers(context):
check_embeddings_within_bounds(input_ids, self.embed_tokens.input_dim)
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
hidden_states = inputs_embeds
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
if input_shape[-1] > 1:
combined_attention_mask = _make_causal_mask(input_shape, past_key_values_length=past_key_values_length)
else:
combined_attention_mask = _expand_mask(
tf.ones((input_shape[0], input_shape[1] + past_key_values_length)), tgt_len=input_shape[-1]
)
if attention_mask is not None:
combined_attention_mask = combined_attention_mask + _expand_mask(attention_mask, tgt_len=input_shape[-1])
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _expand_mask(encoder_attention_mask, tgt_len=input_shape[-1])
hidden_states = self.layernorm_embedding(hidden_states + positions)
hidden_states = self.dropout(hidden_states, training=training)
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attns = () if (output_attentions and encoder_hidden_states is not None) else None
present_key_values = () if use_cache else None
# check if head_mask and cross_attn_head_mask have a correct number of layers specified if desired
for attn_mask_name, attn_mask in [("head_mask", head_mask), ("cross_attn_head_mask", cross_attn_head_mask)]:
if attn_mask is not None:
tf.debugging.assert_equal(
shape_list(attn_mask)[0],
len(self.layers),
message=(
f"The {attn_mask_name} should be specified for {len(self.layers)} layers, but it is for"
f" {shape_list(attn_mask)[0]}."
),
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop):
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
hidden_states, layer_self_attn, layer_cross_attn, present_key_value = decoder_layer(
hidden_states,
attention_mask=combined_attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=head_mask[idx] if head_mask is not None else None,
cross_attn_layer_head_mask=cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None,
past_key_value=past_key_value,
)
if use_cache:
present_key_values += (present_key_value,)
if output_attentions:
all_self_attns += (layer_self_attn,)
if encoder_hidden_states is not None:
all_cross_attns += (layer_cross_attn,)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if not return_dict:
return hidden_states, present_key_values, all_hidden_states, all_self_attns, all_cross_attns
else:
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=present_key_values,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attns,
)
@keras_serializable
class TFBartMainLayer(tf.keras.layers.Layer):
config_class = BartConfig
def __init__(self, config: BartConfig, load_weight_prefix=None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.shared = tf.keras.layers.Embedding(
input_dim=config.vocab_size,
output_dim=config.d_model,
embeddings_initializer=tf.keras.initializers.TruncatedNormal(stddev=self.config.init_std),
name="model.shared",
)
# Additional attribute to specify the expected name scope of the layer (for loading/storing weights)
self.shared.load_weight_prefix = "model.shared" if load_weight_prefix is None else load_weight_prefix
self.encoder = TFBartEncoder(config, self.shared, name="encoder")
self.decoder = TFBartDecoder(config, self.shared, name="decoder")
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, new_embeddings):
self.shared = new_embeddings
self.encoder.embed_tokens = self.shared
self.decoder.embed_tokens = self.shared
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
decoder_head_mask: np.ndarray | tf.Tensor | None = None,
cross_attn_head_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
decoder_inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
**kwargs,
) -> Union[TFSeq2SeqModelOutput, Tuple[tf.Tensor]]:
# different to other models, Bart automatically creates decoder_input_ids from
# input_ids if no decoder_input_ids are provided
if decoder_input_ids is None and decoder_inputs_embeds is None:
if input_ids is None:
raise ValueError(
"If no `decoder_input_ids` or `decoder_inputs_embeds` are "
"passed, `input_ids` cannot be `None`. Please pass either "
"`input_ids` or `decoder_input_ids` or `decoder_inputs_embeds`."
)
decoder_input_ids = shift_tokens_right(
input_ids, self.config.pad_token_id, self.config.decoder_start_token_id
)
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a TFBaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, TFBaseModelOutput):
encoder_outputs = TFBaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# If the user passed a TFBaseModelOutput for encoder_outputs, we wrap it in a tuple when return_dict=False
elif not return_dict and not isinstance(encoder_outputs, tuple):
encoder_outputs = encoder_outputs.to_tuple()
decoder_outputs = self.decoder(
decoder_input_ids,
attention_mask=decoder_attention_mask,
position_ids=decoder_position_ids,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return TFSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"The bare BART Model outputting raw hidden-states without any specific head on top.",
BART_START_DOCSTRING,
)
class TFBartModel(TFBartPretrainedModel):
_requires_load_weight_prefix = True
def __init__(self, config: BartConfig, load_weight_prefix=None, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBartMainLayer(config, load_weight_prefix=load_weight_prefix, name="model")
def get_encoder(self):
return self.model.encoder
def get_decoder(self):
return self.model.decoder
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSeq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
)
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
decoder_head_mask: np.ndarray | tf.Tensor | None = None,
cross_attn_head_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
decoder_inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
**kwargs,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqModelOutput(
last_hidden_state=output.last_hidden_state,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
class BiasLayer(tf.keras.layers.Layer):
"""
Bias as a layer. It is used for serialization purposes: `tf.keras.Model.save_weights` stores on a per-layer basis,
so all weights have to be registered in a layer.
"""
def __init__(self, shape, initializer, trainable, name, **kwargs):
super().__init__(name=name, **kwargs)
# Note: the name of this variable will NOT be scoped when serialized, i.e. it will not be in the format of
# "outer_layer/inner_layer/.../name:0". Instead, it will be "name:0". For further details, see:
# https://github.com/huggingface/transformers/pull/18833#issuecomment-1233090214
self.bias = self.add_weight(name=name, shape=shape, initializer=initializer, trainable=trainable)
def call(self, x):
return x + self.bias
@add_start_docstrings(
"The BART Model with a language modeling head. Can be used for summarization.",
BART_START_DOCSTRING,
)
class TFBartForConditionalGeneration(TFBartPretrainedModel, TFCausalLanguageModelingLoss):
_keys_to_ignore_on_load_missing = [r"final_logits_bias"]
_requires_load_weight_prefix = True
def __init__(self, config, load_weight_prefix=None, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBartMainLayer(config, load_weight_prefix=load_weight_prefix, name="model")
self.use_cache = config.use_cache
# final_bias_logits is registered as a buffer in pytorch, so not trainable for the sake of consistency.
self.bias_layer = BiasLayer(
name="final_logits_bias", shape=[1, config.vocab_size], initializer="zeros", trainable=False
)
def get_decoder(self):
return self.model.decoder
def get_encoder(self):
return self.model.encoder
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
def get_bias(self):
return {"final_logits_bias": self.bias_layer.bias}
def set_bias(self, value):
# Replaces the existing layers containing bias for correct (de)serialization.
vocab_size = value["final_logits_bias"].shape[-1]
self.bias_layer = BiasLayer(
name="final_logits_bias", shape=[1, vocab_size], initializer="zeros", trainable=False
)
self.bias_layer.bias.assign(value["final_logits_bias"])
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(BART_GENERATION_EXAMPLE)
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
decoder_head_mask: np.ndarray | tf.Tensor | None = None,
cross_attn_head_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: Optional[TFBaseModelOutput] = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
decoder_inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFSeq2SeqLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
"""
if labels is not None:
labels = tf.where(
labels == self.config.pad_token_id,
tf.cast(tf.fill(shape_list(labels), -100), labels.dtype),
labels,
)
use_cache = False
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
labels, self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.model(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
encoder_outputs=encoder_outputs,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
lm_logits = tf.matmul(outputs[0], self.model.shared.weights, transpose_b=True)
lm_logits = self.bias_layer(lm_logits)
masked_lm_loss = None if labels is None else self.hf_compute_loss(labels, lm_logits)
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFSeq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values, # index 1 of d outputs
decoder_hidden_states=outputs.decoder_hidden_states, # index 2 of d outputs
decoder_attentions=outputs.decoder_attentions, # index 3 of d outputs
cross_attentions=outputs.cross_attentions, # index 4 of d outputs
encoder_last_hidden_state=outputs.encoder_last_hidden_state, # index 0 of encoder outputs
encoder_hidden_states=outputs.encoder_hidden_states, # 1 of e out
encoder_attentions=outputs.encoder_attentions, # 2 of e out
)
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqLMOutput(
logits=output.logits,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
decoder_input_ids = decoder_input_ids[:, -1:]
if decoder_attention_mask is not None: # xla
decoder_position_ids = tf.math.cumsum(decoder_attention_mask, axis=-1, exclusive=True)[:, -1:]
elif past_key_values is not None: # no xla + past_key_values
decoder_position_ids = past_key_values[0][0].shape[2]
else: # no xla + no past_key_values
decoder_position_ids = tf.range(decoder_input_ids.shape[1])
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"decoder_attention_mask": decoder_attention_mask,
"decoder_position_ids": decoder_position_ids,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
def prepare_decoder_input_ids_from_labels(self, labels: tf.Tensor):
return shift_tokens_right(labels, self.config.pad_token_id, self.config.decoder_start_token_id)
@add_start_docstrings(
"""
Bart model with a sequence classification/head on top (a linear layer on top of the pooled output) e.g. for GLUE
tasks.
""",
BART_START_DOCSTRING,
)
class TFBartForSequenceClassification(TFBartPretrainedModel, TFSequenceClassificationLoss):
def __init__(self, config: BartConfig, load_weight_prefix=None, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBartMainLayer(config, load_weight_prefix=load_weight_prefix, name="model")
self.classification_head = TFBartClassificationHead(
config.d_model, config.num_labels, config.classifier_dropout, name="classification_head"
)
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFSeq2SeqSequenceClassifierOutput, config_class=_CONFIG_FOR_DOC)
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
decoder_head_mask: np.ndarray | tf.Tensor | None = None,
cross_attn_head_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: Optional[TFBaseModelOutput] = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
decoder_inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFSeq2SeqSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
if input_ids is None and inputs_embeds is not None:
raise NotImplementedError(
f"Passing input embeddings is currently not supported for {self.__class__.__name__}"
)
outputs = self.model(
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
decoder_position_ids=decoder_position_ids,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
last_hidden_state = outputs[0]
eos_mask = tf.equal(input_ids, self.config.eos_token_id)
# out the rows with False where present. Then verify all the final
# entries are True
self_masked = tf.reshape(tf.boolean_mask(eos_mask, eos_mask), (tf.shape(input_ids)[0], -1))
tf.Assert(tf.reduce_all(self_masked[:, -1]), ["All examples must have the same number of <eos> tokens."])
masked = tf.reshape(
tf.boolean_mask(last_hidden_state, eos_mask),
(tf.shape(input_ids)[0], tf.shape(self_masked)[1], tf.shape(last_hidden_state)[-1]),
)
sentence_representation = masked[:, -1, :]
logits = self.classification_head(sentence_representation)
loss = None if labels is None else self.hf_compute_loss(labels=labels, logits=logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSeq2SeqSequenceClassifierOutput(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
def serving_output(self, output):
logits = tf.convert_to_tensor(output.logits)
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
cross_attns = tf.convert_to_tensor(output.cross_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqSequenceClassifierOutput(
logits=logits,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
cross_attentions=cross_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
| 74,717 | 46.773657 | 221 | py |
transformers | transformers-main/src/transformers/models/bart/convert_bart_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert BART checkpoint."""
import argparse
import os
from pathlib import Path
import fairseq
import torch
from packaging import version
from torch import nn
from transformers import (
BartConfig,
BartForConditionalGeneration,
BartForSequenceClassification,
BartModel,
BartTokenizer,
)
from transformers.utils import logging
FAIRSEQ_MODELS = ["bart.large", "bart.large.mnli", "bart.large.cnn", "bart_xsum/model.pt"]
extra_arch = {"bart.large": BartModel, "bart.large.mnli": BartForSequenceClassification}
if version.parse(fairseq.__version__) < version.parse("0.9.0"):
raise Exception("requires fairseq >= 0.9.0")
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SAMPLE_TEXT = " Hello world! cécé herlolip"
mnli_rename_keys = [
("model.classification_heads.mnli.dense.weight", "classification_head.dense.weight"),
("model.classification_heads.mnli.dense.bias", "classification_head.dense.bias"),
("model.classification_heads.mnli.out_proj.weight", "classification_head.out_proj.weight"),
("model.classification_heads.mnli.out_proj.bias", "classification_head.out_proj.bias"),
]
def remove_ignore_keys_(state_dict):
ignore_keys = [
"encoder.version",
"decoder.version",
"model.encoder.version",
"model.decoder.version",
"_float_tensor",
]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def load_xsum_checkpoint(checkpoint_path):
"""Checkpoint path should end in model.pt"""
sd = torch.load(checkpoint_path, map_location="cpu")
hub_interface = torch.hub.load("pytorch/fairseq", "bart.large.cnn").eval()
hub_interface.model.load_state_dict(sd["model"])
return hub_interface
def make_linear_from_emb(emb):
vocab_size, emb_size = emb.weight.shape
lin_layer = nn.Linear(vocab_size, emb_size, bias=False)
lin_layer.weight.data = emb.weight.data
return lin_layer
@torch.no_grad()
def convert_bart_checkpoint(checkpoint_path, pytorch_dump_folder_path, hf_checkpoint_name=None):
"""
Copy/paste/tweak model's weights to our BERT structure.
"""
if not os.path.exists(checkpoint_path):
bart = torch.hub.load("pytorch/fairseq", checkpoint_path).eval()
else:
bart = load_xsum_checkpoint(checkpoint_path)
bart.model.upgrade_state_dict(bart.model.state_dict())
if hf_checkpoint_name is None:
hf_checkpoint_name = checkpoint_path.replace(".", "-")
config = BartConfig.from_pretrained(hf_checkpoint_name)
tokens = bart.encode(SAMPLE_TEXT).unsqueeze(0)
tokens2 = BartTokenizer.from_pretrained(hf_checkpoint_name).encode(SAMPLE_TEXT, return_tensors="pt").unsqueeze(0)
if not torch.eq(tokens, tokens2).all():
raise ValueError(
f"converted tokenizer and pretrained tokenizer returned different output: {tokens} != {tokens2}"
)
if checkpoint_path == "bart.large.mnli":
state_dict = bart.state_dict()
remove_ignore_keys_(state_dict)
state_dict["model.shared.weight"] = state_dict["model.decoder.embed_tokens.weight"]
for src, dest in mnli_rename_keys:
rename_key(state_dict, src, dest)
model = BartForSequenceClassification(config).eval()
model.load_state_dict(state_dict)
fairseq_output = bart.predict("mnli", tokens, return_logits=True)
new_model_outputs = model(tokens)[0] # logits
else: # no classification heads to worry about
state_dict = bart.model.state_dict()
remove_ignore_keys_(state_dict)
state_dict["shared.weight"] = state_dict["decoder.embed_tokens.weight"]
fairseq_output = bart.extract_features(tokens)
if hf_checkpoint_name == "facebook/bart-large":
model = BartModel(config).eval()
model.load_state_dict(state_dict)
new_model_outputs = model(tokens).model[0]
else:
model = BartForConditionalGeneration(config).eval() # an existing summarization ckpt
model.model.load_state_dict(state_dict)
if hasattr(model, "lm_head"):
model.lm_head = make_linear_from_emb(model.model.shared)
new_model_outputs = model.model(tokens)[0]
# Check results
if fairseq_output.shape != new_model_outputs.shape:
raise ValueError(
f"`fairseq_output` shape and `new_model_output` shape are different: {fairseq_output.shape=}, {new_model_outputs.shape}"
)
if (fairseq_output != new_model_outputs).any().item():
raise ValueError("Some values in `fairseq_output` are different from `new_model_outputs`")
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
model.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"fairseq_path", type=str, help="bart.large, bart.large.cnn or a path to a model.pt on local filesystem."
)
parser.add_argument("pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument(
"--hf_config", default=None, type=str, help="Which huggingface architecture to use: bart-large-xsum"
)
args = parser.parse_args()
convert_bart_checkpoint(args.fairseq_path, args.pytorch_dump_folder_path, hf_checkpoint_name=args.hf_config)
| 6,053 | 37.316456 | 132 | py |
transformers | transformers-main/src/transformers/models/bart/configuration_bart.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" BART model configuration"""
import warnings
from collections import OrderedDict
from typing import Any, Mapping, Optional
from ... import PreTrainedTokenizer
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig, OnnxConfigWithPast, OnnxSeq2SeqConfigWithPast
from ...onnx.utils import compute_effective_axis_dimension
from ...utils import TensorType, is_torch_available, logging
logger = logging.get_logger(__name__)
BART_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/bart-large": "https://huggingface.co/facebook/bart-large/resolve/main/config.json",
# See all BART models at https://huggingface.co/models?filter=bart
}
class BartConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`BartModel`]. It is used to instantiate a BART
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the BART
[facebook/bart-large](https://huggingface.co/facebook/bart-large) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50265):
Vocabulary size of the BART model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`BartModel`] or [`TFBartModel`].
d_model (`int`, *optional*, defaults to 1024):
Dimensionality of the layers and the pooler layer.
encoder_layers (`int`, *optional*, defaults to 12):
Number of encoder layers.
decoder_layers (`int`, *optional*, defaults to 12):
Number of decoder layers.
encoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
decoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer decoder.
decoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
encoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
activation_function (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
activation_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for activations inside the fully connected layer.
classifier_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for classifier.
max_position_embeddings (`int`, *optional*, defaults to 1024):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
encoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the encoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
decoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the decoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
scale_embedding (`bool`, *optional*, defaults to `False`):
Scale embeddings by diving by sqrt(d_model).
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
num_labels (`int`, *optional*, defaults to 3):
The number of labels to use in [`BartForSequenceClassification`].
forced_eos_token_id (`int`, *optional*, defaults to 2):
The id of the token to force as the last generated token when `max_length` is reached. Usually set to
`eos_token_id`.
Example:
```python
>>> from transformers import BartConfig, BartModel
>>> # Initializing a BART facebook/bart-large style configuration
>>> configuration = BartConfig()
>>> # Initializing a model (with random weights) from the facebook/bart-large style configuration
>>> model = BartModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "bart"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {"num_attention_heads": "encoder_attention_heads", "hidden_size": "d_model"}
def __init__(
self,
vocab_size=50265,
max_position_embeddings=1024,
encoder_layers=12,
encoder_ffn_dim=4096,
encoder_attention_heads=16,
decoder_layers=12,
decoder_ffn_dim=4096,
decoder_attention_heads=16,
encoder_layerdrop=0.0,
decoder_layerdrop=0.0,
activation_function="gelu",
d_model=1024,
dropout=0.1,
attention_dropout=0.0,
activation_dropout=0.0,
init_std=0.02,
classifier_dropout=0.0,
scale_embedding=False,
use_cache=True,
num_labels=3,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
is_encoder_decoder=True,
decoder_start_token_id=2,
forced_eos_token_id=2,
**kwargs,
):
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.d_model = d_model
self.encoder_ffn_dim = encoder_ffn_dim
self.encoder_layers = encoder_layers
self.encoder_attention_heads = encoder_attention_heads
self.decoder_ffn_dim = decoder_ffn_dim
self.decoder_layers = decoder_layers
self.decoder_attention_heads = decoder_attention_heads
self.dropout = dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.activation_function = activation_function
self.init_std = init_std
self.encoder_layerdrop = encoder_layerdrop
self.decoder_layerdrop = decoder_layerdrop
self.classifier_dropout = classifier_dropout
self.use_cache = use_cache
self.num_hidden_layers = encoder_layers
self.scale_embedding = scale_embedding # scale factor will be sqrt(d_model) if True
super().__init__(
num_labels=num_labels,
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
is_encoder_decoder=is_encoder_decoder,
decoder_start_token_id=decoder_start_token_id,
forced_eos_token_id=forced_eos_token_id,
**kwargs,
)
# ensure backward compatibility for BART CNN models
if self.forced_bos_token_id is None and kwargs.get("force_bos_token_to_be_generated", False):
self.forced_bos_token_id = self.bos_token_id
warnings.warn(
f"Please make sure the config includes `forced_bos_token_id={self.bos_token_id}` in future versions. "
"The config can simply be saved and uploaded again to be fixed."
)
class BartOnnxConfig(OnnxSeq2SeqConfigWithPast):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task in ["default", "seq2seq-lm"]:
common_inputs = OrderedDict(
[
("input_ids", {0: "batch", 1: "encoder_sequence"}),
("attention_mask", {0: "batch", 1: "encoder_sequence"}),
]
)
if self.use_past:
common_inputs["decoder_input_ids"] = {0: "batch"}
common_inputs["decoder_attention_mask"] = {0: "batch", 1: "past_decoder_sequence + sequence"}
else:
common_inputs["decoder_input_ids"] = {0: "batch", 1: "decoder_sequence"}
common_inputs["decoder_attention_mask"] = {0: "batch", 1: "decoder_sequence"}
if self.use_past:
self.fill_with_past_key_values_(common_inputs, direction="inputs")
elif self.task == "causal-lm":
# TODO: figure this case out.
common_inputs = OrderedDict(
[
("input_ids", {0: "batch", 1: "encoder_sequence"}),
("attention_mask", {0: "batch", 1: "encoder_sequence"}),
]
)
if self.use_past:
num_encoder_layers, _ = self.num_layers
for i in range(num_encoder_layers):
common_inputs[f"past_key_values.{i}.key"] = {0: "batch", 2: "past_sequence + sequence"}
common_inputs[f"past_key_values.{i}.value"] = {0: "batch", 2: "past_sequence + sequence"}
else:
common_inputs = OrderedDict(
[
("input_ids", {0: "batch", 1: "encoder_sequence"}),
("attention_mask", {0: "batch", 1: "encoder_sequence"}),
("decoder_input_ids", {0: "batch", 1: "decoder_sequence"}),
("decoder_attention_mask", {0: "batch", 1: "decoder_sequence"}),
]
)
return common_inputs
@property
def outputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task in ["default", "seq2seq-lm"]:
common_outputs = super().outputs
else:
common_outputs = super(OnnxConfigWithPast, self).outputs
if self.use_past:
num_encoder_layers, _ = self.num_layers
for i in range(num_encoder_layers):
common_outputs[f"present.{i}.key"] = {0: "batch", 2: "past_sequence + sequence"}
common_outputs[f"present.{i}.value"] = {0: "batch", 2: "past_sequence + sequence"}
return common_outputs
def _generate_dummy_inputs_for_default_and_seq2seq_lm(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
encoder_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size, seq_length, is_pair, framework
)
# Generate decoder inputs
decoder_seq_length = seq_length if not self.use_past else 1
decoder_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size, decoder_seq_length, is_pair, framework
)
decoder_inputs = {f"decoder_{name}": tensor for name, tensor in decoder_inputs.items()}
common_inputs = dict(**encoder_inputs, **decoder_inputs)
if self.use_past:
if not is_torch_available():
raise ValueError("Cannot generate dummy past_keys inputs without PyTorch installed.")
else:
import torch
batch, encoder_seq_length = common_inputs["input_ids"].shape
decoder_seq_length = common_inputs["decoder_input_ids"].shape[1]
num_encoder_attention_heads, num_decoder_attention_heads = self.num_attention_heads
encoder_shape = (
batch,
num_encoder_attention_heads,
encoder_seq_length,
self._config.hidden_size // num_encoder_attention_heads,
)
decoder_past_length = decoder_seq_length + 3
decoder_shape = (
batch,
num_decoder_attention_heads,
decoder_past_length,
self._config.hidden_size // num_decoder_attention_heads,
)
common_inputs["decoder_attention_mask"] = torch.cat(
[common_inputs["decoder_attention_mask"], torch.ones(batch, decoder_past_length)], dim=1
)
common_inputs["past_key_values"] = []
# If the number of encoder and decoder layers are present in the model configuration, both are considered
num_encoder_layers, num_decoder_layers = self.num_layers
min_num_layers = min(num_encoder_layers, num_decoder_layers)
max_num_layers = max(num_encoder_layers, num_decoder_layers) - min_num_layers
remaining_side_name = "encoder" if num_encoder_layers > num_decoder_layers else "decoder"
for _ in range(min_num_layers):
common_inputs["past_key_values"].append(
(
torch.zeros(decoder_shape),
torch.zeros(decoder_shape),
torch.zeros(encoder_shape),
torch.zeros(encoder_shape),
)
)
# TODO: test this.
shape = encoder_shape if remaining_side_name == "encoder" else decoder_shape
for _ in range(min_num_layers, max_num_layers):
common_inputs["past_key_values"].append((torch.zeros(shape), torch.zeros(shape)))
return common_inputs
def _generate_dummy_inputs_for_causal_lm(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
common_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size, seq_length, is_pair, framework
)
if self.use_past:
if not is_torch_available():
raise ValueError("Cannot generate dummy past_keys inputs without PyTorch installed.")
else:
import torch
batch, seqlen = common_inputs["input_ids"].shape
# Not using the same length for past_key_values
past_key_values_length = seqlen + 2
num_encoder_layers, _ = self.num_layers
num_encoder_attention_heads, _ = self.num_attention_heads
past_shape = (
batch,
num_encoder_attention_heads,
past_key_values_length,
self._config.hidden_size // num_encoder_attention_heads,
)
mask_dtype = common_inputs["attention_mask"].dtype
common_inputs["attention_mask"] = torch.cat(
[common_inputs["attention_mask"], torch.ones(batch, past_key_values_length, dtype=mask_dtype)], dim=1
)
common_inputs["past_key_values"] = [
(torch.zeros(past_shape), torch.zeros(past_shape)) for _ in range(num_encoder_layers)
]
return common_inputs
def _generate_dummy_inputs_for_sequence_classification_and_question_answering(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
# Copied from OnnxConfig.generate_dummy_inputs
# Did not use super(OnnxConfigWithPast, self).generate_dummy_inputs for code clarity.
# If dynamic axis (-1) we forward with a fixed dimension of 2 samples to avoid optimizations made by ONNX
batch_size = compute_effective_axis_dimension(
batch_size, fixed_dimension=OnnxConfig.default_fixed_batch, num_token_to_add=0
)
# If dynamic axis (-1) we forward with a fixed dimension of 8 tokens to avoid optimizations made by ONNX
token_to_add = tokenizer.num_special_tokens_to_add(is_pair)
seq_length = compute_effective_axis_dimension(
seq_length, fixed_dimension=OnnxConfig.default_fixed_sequence, num_token_to_add=token_to_add
)
# Generate dummy inputs according to compute batch and sequence
dummy_input = [" ".join([tokenizer.unk_token]) * seq_length] * batch_size
common_inputs = dict(tokenizer(dummy_input, return_tensors=framework))
return common_inputs
def generate_dummy_inputs(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
if self.task in ["default", "seq2seq-lm"]:
common_inputs = self._generate_dummy_inputs_for_default_and_seq2seq_lm(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
elif self.task == "causal-lm":
common_inputs = self._generate_dummy_inputs_for_causal_lm(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
else:
common_inputs = self._generate_dummy_inputs_for_sequence_classification_and_question_answering(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
return common_inputs
def _flatten_past_key_values_(self, flattened_output, name, idx, t):
if self.task in ["default", "seq2seq-lm"]:
flattened_output = super()._flatten_past_key_values_(flattened_output, name, idx, t)
else:
flattened_output = super(OnnxSeq2SeqConfigWithPast, self)._flatten_past_key_values_(
flattened_output, name, idx, t
)
| 18,993 | 45.783251 | 119 | py |
transformers | transformers-main/src/transformers/models/bart/modeling_bart.py | # coding=utf-8
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch BART model."""
import copy
import math
import warnings
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
Seq2SeqQuestionAnsweringModelOutput,
Seq2SeqSequenceClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_bart import BartConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/bart-base"
_CONFIG_FOR_DOC = "BartConfig"
# Base model docstring
_EXPECTED_OUTPUT_SHAPE = [1, 8, 768]
# SequenceClassification docstring
_CHECKPOINT_FOR_SEQUENCE_CLASSIFICATION = "valhalla/bart-large-sst2"
_SEQ_CLASS_EXPECTED_LOSS = 0.0
_SEQ_CLASS_EXPECTED_OUTPUT = "'POSITIVE'"
# QuestionAsnwering docstring
_CHECKPOINT_FOR_QA = "valhalla/bart-large-finetuned-squadv1"
_QA_EXPECTED_LOSS = 0.59
_QA_EXPECTED_OUTPUT = "' nice puppet'"
BART_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/bart-large",
# see all BART models at https://huggingface.co/models?filter=bart
]
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int):
"""
Shift input ids one token to the right.
"""
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
shifted_input_ids[:, 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids
def _make_causal_mask(
input_ids_shape: torch.Size, dtype: torch.dtype, device: torch.device, past_key_values_length: int = 0
):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz, tgt_len = input_ids_shape
mask = torch.full((tgt_len, tgt_len), torch.finfo(dtype).min, device=device)
mask_cond = torch.arange(mask.size(-1), device=device)
mask.masked_fill_(mask_cond < (mask_cond + 1).view(mask.size(-1), 1), 0)
mask = mask.to(dtype)
if past_key_values_length > 0:
mask = torch.cat([torch.zeros(tgt_len, past_key_values_length, dtype=dtype, device=device), mask], dim=-1)
return mask[None, None, :, :].expand(bsz, 1, tgt_len, tgt_len + past_key_values_length)
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(dtype).min)
class BartLearnedPositionalEmbedding(nn.Embedding):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int):
# Bart is set up so that if padding_idx is specified then offset the embedding ids by 2
# and adjust num_embeddings appropriately. Other models don't have this hack
self.offset = 2
super().__init__(num_embeddings + self.offset, embedding_dim)
def forward(self, input_ids: torch.Tensor, past_key_values_length: int = 0):
"""`input_ids' shape is expected to be [bsz x seqlen]."""
bsz, seq_len = input_ids.shape[:2]
positions = torch.arange(
past_key_values_length, past_key_values_length + seq_len, dtype=torch.long, device=self.weight.device
).expand(bsz, -1)
return super().forward(positions + self.offset)
class BartAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, _ = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, tgt_len, bsz).view(*proj_shape)
key_states = key_states.reshape(*proj_shape)
value_states = value_states.reshape(*proj_shape)
src_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (bsz * self.num_heads, tgt_len, src_len):
raise ValueError(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, tgt_len, src_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attention_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if layer_head_mask is not None:
if layer_head_mask.size() != (self.num_heads,):
raise ValueError(
f"Head mask for a single layer should be of size {(self.num_heads,)}, but is"
f" {layer_head_mask.size()}"
)
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to be reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, src_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (bsz * self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz * self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(bsz, self.num_heads, tgt_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
# Use the `embed_dim` from the config (stored in the class) rather than `hidden_state` because `attn_output` can be
# partitioned across GPUs when using tensor-parallelism.
attn_output = attn_output.reshape(bsz, tgt_len, self.embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped, past_key_value
class BartEncoderLayer(nn.Module):
def __init__(self, config: BartConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = BartAttention(
embed_dim=self.embed_dim,
num_heads=config.encoder_attention_heads,
dropout=config.attention_dropout,
)
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_ffn_dim)
self.fc2 = nn.Linear(config.encoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.FloatTensor,
attention_mask: torch.FloatTensor,
layer_head_mask: torch.FloatTensor,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.FloatTensor, Optional[torch.FloatTensor]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
hidden_states, attn_weights, _ = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
if hidden_states.dtype == torch.float16 and (
torch.isinf(hidden_states).any() or torch.isnan(hidden_states).any()
):
clamp_value = torch.finfo(hidden_states.dtype).max - 1000
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class BartDecoderLayer(nn.Module):
def __init__(self, config: BartConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = BartAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.encoder_attn = BartAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
)
self.encoder_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, config.decoder_ffn_dim)
self.fc2 = nn.Linear(config.decoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
cross_attn_layer_head_mask: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = True,
) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
encoder_hidden_states (`torch.FloatTensor`):
cross attention input to the layer of shape `(batch, seq_len, embed_dim)`
encoder_attention_mask (`torch.FloatTensor`): encoder attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`.
cross_attn_layer_head_mask (`torch.FloatTensor`): mask for cross-attention heads in a given layer of
size `(decoder_attention_heads,)`.
past_key_value (`Tuple(torch.FloatTensor)`): cached past key and value projection states
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
# Self Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
if use_cache:
outputs += (present_key_value,)
return outputs
class BartClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(
self,
input_dim: int,
inner_dim: int,
num_classes: int,
pooler_dropout: float,
):
super().__init__()
self.dense = nn.Linear(input_dim, inner_dim)
self.dropout = nn.Dropout(p=pooler_dropout)
self.out_proj = nn.Linear(inner_dim, num_classes)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
class BartPretrainedModel(PreTrainedModel):
config_class = BartConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
_keys_to_ignore_on_load_unexpected = ["encoder.version", "decoder.version"]
_no_split_modules = [r"BartEncoderLayer", r"BartDecoderLayer"]
_skip_keys_device_placement = "past_key_values"
def _init_weights(self, module):
std = self.config.init_std
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, (BartDecoder, BartEncoder)):
module.gradient_checkpointing = value
@property
def dummy_inputs(self):
pad_token = self.config.pad_token_id
input_ids = torch.tensor([[0, 6, 10, 4, 2], [0, 8, 12, 2, pad_token]], device=self.device)
dummy_inputs = {
"attention_mask": input_ids.ne(pad_token),
"input_ids": input_ids,
}
return dummy_inputs
class PretrainedBartModel(BartPretrainedModel):
def __init_subclass__(self):
warnings.warn(
"The class `PretrainedBartModel` has been depreciated, please use `BartPretrainedModel` instead.",
FutureWarning,
)
BART_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`BartConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
BART_GENERATION_EXAMPLE = r"""
Summarization example:
```python
>>> from transformers import AutoTokenizer, BartForConditionalGeneration
>>> model = BartForConditionalGeneration.from_pretrained("facebook/bart-large-cnn")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large-cnn")
>>> ARTICLE_TO_SUMMARIZE = (
... "PG&E stated it scheduled the blackouts in response to forecasts for high winds "
... "amid dry conditions. The aim is to reduce the risk of wildfires. Nearly 800 thousand customers were "
... "scheduled to be affected by the shutoffs which were expected to last through at least midday tomorrow."
... )
>>> inputs = tokenizer([ARTICLE_TO_SUMMARIZE], max_length=1024, return_tensors="pt")
>>> # Generate Summary
>>> summary_ids = model.generate(inputs["input_ids"], num_beams=2, min_length=0, max_length=20)
>>> tokenizer.batch_decode(summary_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
'PG&E scheduled the blackouts in response to forecasts for high winds amid dry conditions'
```
Mask filling example:
```python
>>> from transformers import AutoTokenizer, BartForConditionalGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-base")
>>> model = BartForConditionalGeneration.from_pretrained("facebook/bart-base")
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> input_ids = tokenizer([TXT], return_tensors="pt")["input_ids"]
>>> logits = model(input_ids).logits
>>> masked_index = (input_ids[0] == tokenizer.mask_token_id).nonzero().item()
>>> probs = logits[0, masked_index].softmax(dim=0)
>>> values, predictions = probs.topk(5)
>>> tokenizer.decode(predictions).split()
['not', 'good', 'healthy', 'great', 'very']
```
"""
BART_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
Bart uses the `eos_token_id` as the starting token for `decoder_input_ids` generation. If `past_key_values`
is used, optionally only the last `decoder_input_ids` have to be input (see `past_key_values`).
For translation and summarization training, `decoder_input_ids` should be provided. If no
`decoder_input_ids` is provided, the model will create this tensor by shifting the `input_ids` to the right
for denoising pre-training following the paper.
decoder_attention_mask (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
If you want to change padding behavior, you should read [`modeling_bart._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`. inputs_embeds (`torch.FloatTensor` of shape
`(batch_size, sequence_length, hidden_size)`, *optional*): Optionally, instead of passing `input_ids` you
can choose to directly pass an embedded representation. This is useful if you want more control over how to
convert `input_ids` indices into associated vectors than the model's internal embedding lookup matrix.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, target_sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `decoder_input_ids` you can choose to directly pass an embedded
representation. If `past_key_values` is used, optionally only the last `decoder_inputs_embeds` have to be
input (see `past_key_values`). This is useful if you want more control over how to convert
`decoder_input_ids` indices into associated vectors than the model's internal embedding lookup matrix.
If `decoder_input_ids` and `decoder_inputs_embeds` are both unset, `decoder_inputs_embeds` takes the value
of `inputs_embeds`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class BartEncoder(BartPretrainedModel):
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
[`BartEncoderLayer`].
Args:
config: BartConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: BartConfig, embed_tokens: Optional[nn.Embedding] = None):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.encoder_layerdrop
embed_dim = config.d_model
self.padding_idx = config.pad_token_id
self.max_source_positions = config.max_position_embeddings
self.embed_scale = math.sqrt(embed_dim) if config.scale_embedding else 1.0
self.embed_tokens = nn.Embedding(config.vocab_size, embed_dim, self.padding_idx)
if embed_tokens is not None:
self.embed_tokens.weight = embed_tokens.weight
self.embed_positions = BartLearnedPositionalEmbedding(
config.max_position_embeddings,
embed_dim,
)
self.layers = nn.ModuleList([BartEncoderLayer(config) for _ in range(config.encoder_layers)])
self.layernorm_embedding = nn.LayerNorm(embed_dim)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input = input_ids
input_ids = input_ids.view(-1, input_ids.shape[-1])
elif inputs_embeds is not None:
input = inputs_embeds[:, :, -1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(input)
embed_pos = embed_pos.to(inputs_embeds.device)
hidden_states = inputs_embeds + embed_pos
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
# expand attention_mask
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _expand_mask(attention_mask, inputs_embeds.dtype)
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
if head_mask.size()[0] != (len(self.layers)):
raise ValueError(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
to_drop = False
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop: # skip the layer
to_drop = True
if to_drop:
layer_outputs = (None, None)
else:
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(encoder_layer),
hidden_states,
attention_mask,
(head_mask[idx] if head_mask is not None else None),
)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
class BartDecoder(BartPretrainedModel):
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`BartDecoderLayer`]
Args:
config: BartConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: BartConfig, embed_tokens: Optional[nn.Embedding] = None):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.decoder_layerdrop
self.padding_idx = config.pad_token_id
self.max_target_positions = config.max_position_embeddings
self.embed_scale = math.sqrt(config.d_model) if config.scale_embedding else 1.0
self.embed_tokens = nn.Embedding(config.vocab_size, config.d_model, self.padding_idx)
if embed_tokens is not None:
self.embed_tokens.weight = embed_tokens.weight
self.embed_positions = BartLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
)
self.layers = nn.ModuleList([BartDecoderLayer(config) for _ in range(config.decoder_layers)])
self.layernorm_embedding = nn.LayerNorm(config.d_model)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embed_tokens
def set_input_embeddings(self, value):
self.embed_tokens = value
def _prepare_decoder_attention_mask(self, attention_mask, input_shape, inputs_embeds, past_key_values_length):
# create causal mask
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
combined_attention_mask = None
if input_shape[-1] > 1:
combined_attention_mask = _make_causal_mask(
input_shape,
inputs_embeds.dtype,
device=inputs_embeds.device,
past_key_values_length=past_key_values_length,
)
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
expanded_attn_mask = _expand_mask(attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1]).to(
inputs_embeds.device
)
combined_attention_mask = (
expanded_attn_mask if combined_attention_mask is None else expanded_attn_mask + combined_attention_mask
)
return combined_attention_mask
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPastAndCrossAttentions]:
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`torch.LongTensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder to avoid performing
cross-attention on hidden heads. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of
shape `(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`. inputs_embeds (`torch.FloatTensor` of
shape `(batch_size, sequence_length, hidden_size)`, *optional*): Optionally, instead of passing
`input_ids` you can choose to directly pass an embedded representation. This is useful if you want more
control over how to convert `input_ids` indices into associated vectors than the model's internal
embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# retrieve input_ids and inputs_embeds
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
input = input_ids
input_shape = input.shape
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
input = inputs_embeds[:, :, -1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if inputs_embeds is None:
inputs_embeds = self.embed_tokens(input) * self.embed_scale
attention_mask = self._prepare_decoder_attention_mask(
attention_mask, input_shape, inputs_embeds, past_key_values_length
)
# expand encoder attention mask
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _expand_mask(encoder_attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1])
# embed positions
positions = self.embed_positions(input, past_key_values_length)
positions = positions.to(inputs_embeds.device)
hidden_states = inputs_embeds + positions
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
next_decoder_cache = () if use_cache else None
# check if head_mask/cross_attn_head_mask has a correct number of layers specified if desired
for attn_mask, mask_name in zip([head_mask, cross_attn_head_mask], ["head_mask", "cross_attn_head_mask"]):
if attn_mask is not None:
if attn_mask.size()[0] != (len(self.layers)):
raise ValueError(
f"The `{mask_name}` should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
# None for past_key_value
return module(*inputs, output_attentions, use_cache)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(decoder_layer),
hidden_states,
attention_mask,
encoder_hidden_states,
encoder_attention_mask,
head_mask[idx] if head_mask is not None else None,
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None,
None,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
cross_attn_layer_head_mask=(
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None
),
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[3 if output_attentions else 1],)
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if not return_dict:
return tuple(
v
for v in [hidden_states, next_cache, all_hidden_states, all_self_attns, all_cross_attentions]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
@add_start_docstrings(
"The bare BART Model outputting raw hidden-states without any specific head on top.",
BART_START_DOCSTRING,
)
class BartModel(BartPretrainedModel):
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]
def __init__(self, config: BartConfig):
super().__init__(config)
padding_idx, vocab_size = config.pad_token_id, config.vocab_size
self.shared = nn.Embedding(vocab_size, config.d_model, padding_idx)
self.encoder = BartEncoder(config, self.shared)
self.decoder = BartDecoder(config, self.shared)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, value):
self.shared = value
self.encoder.embed_tokens = self.shared
self.decoder.embed_tokens = self.shared
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=Seq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Seq2SeqModelOutput]:
# different to other models, Bart automatically creates decoder_input_ids from
# input_ids if no decoder_input_ids are provided
if decoder_input_ids is None and decoder_inputs_embeds is None:
if input_ids is None:
raise ValueError(
"If no `decoder_input_ids` or `decoder_inputs_embeds` are "
"passed, `input_ids` cannot be `None`. Please pass either "
"`input_ids` or `decoder_input_ids` or `decoder_inputs_embeds`."
)
decoder_input_ids = shift_tokens_right(
input_ids, self.config.pad_token_id, self.config.decoder_start_token_id
)
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a BaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# decoder outputs consists of (dec_features, past_key_value, dec_hidden, dec_attn)
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=attention_mask,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return Seq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"The BART Model with a language modeling head. Can be used for summarization.", BART_START_DOCSTRING
)
class BartForConditionalGeneration(BartPretrainedModel):
base_model_prefix = "model"
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight", "lm_head.weight"]
_keys_to_ignore_on_load_missing = ["final_logits_bias"]
def __init__(self, config: BartConfig):
super().__init__(config)
self.model = BartModel(config)
self.register_buffer("final_logits_bias", torch.zeros((1, self.model.shared.num_embeddings)))
self.lm_head = nn.Linear(config.d_model, self.model.shared.num_embeddings, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_encoder(self):
return self.model.get_encoder()
def get_decoder(self):
return self.model.get_decoder()
def resize_token_embeddings(self, new_num_tokens: int) -> nn.Embedding:
new_embeddings = super().resize_token_embeddings(new_num_tokens)
self._resize_final_logits_bias(new_num_tokens)
return new_embeddings
def _resize_final_logits_bias(self, new_num_tokens: int) -> None:
old_num_tokens = self.final_logits_bias.shape[-1]
if new_num_tokens <= old_num_tokens:
new_bias = self.final_logits_bias[:, :new_num_tokens]
else:
extra_bias = torch.zeros((1, new_num_tokens - old_num_tokens), device=self.final_logits_bias.device)
new_bias = torch.cat([self.final_logits_bias, extra_bias], dim=1)
self.register_buffer("final_logits_bias", new_bias)
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(BART_GENERATION_EXAMPLE)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Seq2SeqLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
if use_cache:
logger.warning("The `use_cache` argument is changed to `False` since `labels` is provided.")
use_cache = False
if decoder_input_ids is None and decoder_inputs_embeds is None:
decoder_input_ids = shift_tokens_right(
labels, self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.model(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
encoder_outputs=encoder_outputs,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
lm_logits = self.lm_head(outputs[0])
lm_logits = lm_logits + self.final_logits_bias.to(lm_logits.device)
masked_lm_loss = None
if labels is not None:
labels = labels.to(lm_logits.device)
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(lm_logits.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return Seq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
decoder_input_ids = decoder_input_ids[:, -1:]
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"decoder_attention_mask": decoder_attention_mask,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
def prepare_decoder_input_ids_from_labels(self, labels: torch.Tensor):
return shift_tokens_right(labels, self.config.pad_token_id, self.config.decoder_start_token_id)
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
# cached cross_attention states don't have to be reordered -> they are always the same
reordered_past += (
tuple(past_state.index_select(0, beam_idx) for past_state in layer_past[:2]) + layer_past[2:],
)
return reordered_past
@add_start_docstrings(
"""
Bart model with a sequence classification/head on top (a linear layer on top of the pooled output) e.g. for GLUE
tasks.
""",
BART_START_DOCSTRING,
)
class BartForSequenceClassification(BartPretrainedModel):
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]
def __init__(self, config: BartConfig, **kwargs):
super().__init__(config, **kwargs)
self.model = BartModel(config)
self.classification_head = BartClassificationHead(
config.d_model,
config.d_model,
config.num_labels,
config.classifier_dropout,
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_SEQUENCE_CLASSIFICATION,
output_type=Seq2SeqSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_SEQ_CLASS_EXPECTED_OUTPUT,
expected_loss=_SEQ_CLASS_EXPECTED_LOSS,
)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Seq2SeqSequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
if input_ids is None and inputs_embeds is not None:
raise NotImplementedError(
f"Passing input embeddings is currently not supported for {self.__class__.__name__}"
)
outputs = self.model(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0] # last hidden state
eos_mask = input_ids.eq(self.config.eos_token_id).to(hidden_states.device)
if len(torch.unique_consecutive(eos_mask.sum(1))) > 1:
raise ValueError("All examples must have the same number of <eos> tokens.")
sentence_representation = hidden_states[eos_mask, :].view(hidden_states.size(0), -1, hidden_states.size(-1))[
:, -1, :
]
logits = self.classification_head(sentence_representation)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.config.num_labels == 1:
self.config.problem_type = "regression"
elif self.config.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.config.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return Seq2SeqSequenceClassifierOutput(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"""
BART Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layer on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
BART_START_DOCSTRING,
)
class BartForQuestionAnswering(BartPretrainedModel):
_tied_weights_keys = ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]
def __init__(self, config):
super().__init__(config)
config.num_labels = 2
self.num_labels = config.num_labels
self.model = BartModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_QA,
output_type=Seq2SeqQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
expected_loss=_QA_EXPECTED_LOSS,
expected_output=_QA_EXPECTED_OUTPUT,
)
def forward(
self,
input_ids: torch.Tensor = None,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, Seq2SeqQuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (*sequence_length*). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (*sequence_length*). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if start_positions is not None and end_positions is not None:
use_cache = False
outputs = self.model(
input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (
start_logits,
end_logits,
) + outputs[1:]
return ((total_loss,) + output) if total_loss is not None else output
return Seq2SeqQuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
class BartDecoderWrapper(BartPretrainedModel):
"""
This wrapper class is a helper class to correctly load pretrained checkpoints when the causal language model is
used in combination with the [`EncoderDecoderModel`] framework.
"""
def __init__(self, config):
super().__init__(config)
self.decoder = BartDecoder(config)
def forward(self, *args, **kwargs):
return self.decoder(*args, **kwargs)
@add_start_docstrings(
"""
BART decoder with with a language modeling head on top (linear layer with weights tied to the input embeddings).
""",
BART_START_DOCSTRING,
)
class BartForCausalLM(BartPretrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
config = copy.deepcopy(config)
config.is_decoder = True
config.is_encoder_decoder = False
super().__init__(config)
self.model = BartDecoderWrapper(config)
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.model.decoder.embed_tokens
def set_input_embeddings(self, value):
self.model.decoder.embed_tokens = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def set_decoder(self, decoder):
self.model.decoder = decoder
def get_decoder(self):
return self.model.decoder
@replace_return_docstrings(output_type=CausalLMOutputWithCrossAttentions, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, CausalLMOutputWithCrossAttentions]:
r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
if the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used
in the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of
shape `(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`. The two additional
tensors are only required when the model is used as a decoder in a Sequence to Sequence model.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding
(see `past_key_values`).
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, BartForCausalLM
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/bart-base")
>>> model = BartForCausalLM.from_pretrained("facebook/bart-base", add_cross_attention=False)
>>> assert model.config.is_decoder, f"{model.__class__} has to be configured as a decoder."
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> expected_shape = [1, inputs.input_ids.shape[-1], model.config.vocab_size]
>>> list(logits.shape) == expected_shape
True
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.model.decoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
head_mask=head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = self.lm_head(outputs[0])
loss = None
if labels is not None:
labels = labels.to(logits.device)
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(
self, input_ids, past_key_values=None, attention_mask=None, use_cache=None, **kwargs
):
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_ids.shape)
if past_key_values:
input_ids = input_ids[:, -1:]
# first step, decoder_cached_states are empty
return {
"input_ids": input_ids, # encoder_outputs is defined. input_ids not needed
"attention_mask": attention_mask,
"past_key_values": past_key_values,
"use_cache": use_cache,
}
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (tuple(past_state.index_select(0, beam_idx) for past_state in layer_past),)
return reordered_past
| 90,105 | 45.374678 | 150 | py |
transformers | transformers-main/src/transformers/models/bart/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_bart": ["BART_PRETRAINED_CONFIG_ARCHIVE_MAP", "BartConfig", "BartOnnxConfig"],
"tokenization_bart": ["BartTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_bart_fast"] = ["BartTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_bart"] = [
"BART_PRETRAINED_MODEL_ARCHIVE_LIST",
"BartForCausalLM",
"BartForConditionalGeneration",
"BartForQuestionAnswering",
"BartForSequenceClassification",
"BartModel",
"BartPretrainedModel",
"PretrainedBartModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_bart"] = [
"TFBartForConditionalGeneration",
"TFBartForSequenceClassification",
"TFBartModel",
"TFBartPretrainedModel",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_bart"] = [
"FlaxBartDecoderPreTrainedModel",
"FlaxBartForCausalLM",
"FlaxBartForConditionalGeneration",
"FlaxBartForQuestionAnswering",
"FlaxBartForSequenceClassification",
"FlaxBartModel",
"FlaxBartPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_bart import BART_PRETRAINED_CONFIG_ARCHIVE_MAP, BartConfig, BartOnnxConfig
from .tokenization_bart import BartTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_bart_fast import BartTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_bart import (
BART_PRETRAINED_MODEL_ARCHIVE_LIST,
BartForCausalLM,
BartForConditionalGeneration,
BartForQuestionAnswering,
BartForSequenceClassification,
BartModel,
BartPretrainedModel,
PretrainedBartModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_bart import (
TFBartForConditionalGeneration,
TFBartForSequenceClassification,
TFBartModel,
TFBartPretrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_bart import (
FlaxBartDecoderPreTrainedModel,
FlaxBartForCausalLM,
FlaxBartForConditionalGeneration,
FlaxBartForQuestionAnswering,
FlaxBartForSequenceClassification,
FlaxBartModel,
FlaxBartPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 4,333 | 28.482993 | 113 | py |
transformers | transformers-main/src/transformers/models/bart/tokenization_bart.py | # coding=utf-8
# Copyright 2020 The Facebook AI Research Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import json
import os
from functools import lru_cache
from typing import List, Optional, Tuple
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt"}
# See all BART models at https://huggingface.co/models?filter=bart
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"facebook/bart-base": "https://huggingface.co/facebook/bart-base/resolve/main/vocab.json",
"facebook/bart-large": "https://huggingface.co/facebook/bart-large/resolve/main/vocab.json",
"facebook/bart-large-mnli": "https://huggingface.co/facebook/bart-large-mnli/resolve/main/vocab.json",
"facebook/bart-large-cnn": "https://huggingface.co/facebook/bart-large-cnn/resolve/main/vocab.json",
"facebook/bart-large-xsum": "https://huggingface.co/facebook/bart-large-xsum/resolve/main/vocab.json",
"yjernite/bart_eli5": "https://huggingface.co/yjernite/bart_eli5/resolve/main/vocab.json",
},
"merges_file": {
"facebook/bart-base": "https://huggingface.co/facebook/bart-base/resolve/main/merges.txt",
"facebook/bart-large": "https://huggingface.co/facebook/bart-large/resolve/main/merges.txt",
"facebook/bart-large-mnli": "https://huggingface.co/facebook/bart-large-mnli/resolve/main/merges.txt",
"facebook/bart-large-cnn": "https://huggingface.co/facebook/bart-large-cnn/resolve/main/merges.txt",
"facebook/bart-large-xsum": "https://huggingface.co/facebook/bart-large-xsum/resolve/main/merges.txt",
"yjernite/bart_eli5": "https://huggingface.co/yjernite/bart_eli5/resolve/main/merges.txt",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"facebook/bart-base": 1024,
"facebook/bart-large": 1024,
"facebook/bart-large-mnli": 1024,
"facebook/bart-large-cnn": 1024,
"facebook/bart-large-xsum": 1024,
"yjernite/bart_eli5": 1024,
}
@lru_cache()
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on.
The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs))
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
class BartTokenizer(PreTrainedTokenizer):
"""
Constructs a BART tokenizer, which is smilar to the ROBERTa tokenizer, using byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import BartTokenizer
>>> tokenizer = BartTokenizer.from_pretrained("facebook/bart-base")
>>> tokenizer("Hello world")["input_ids"]
[0, 31414, 232, 2]
>>> tokenizer(" Hello world")["input_ids"]
[0, 20920, 232, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer will add a space before each word (even the first one).
</Tip>
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (BART tokenizer detect beginning of words by the preceding space).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
merges_file,
errors="replace",
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
add_prefix_space=False,
**kwargs,
):
bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
sep_token = AddedToken(sep_token, lstrip=False, rstrip=False) if isinstance(sep_token, str) else sep_token
cls_token = AddedToken(cls_token, lstrip=False, rstrip=False) if isinstance(cls_token, str) else cls_token
unk_token = AddedToken(unk_token, lstrip=False, rstrip=False) if isinstance(unk_token, str) else unk_token
pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
super().__init__(
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
**kwargs,
)
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
self.errors = errors # how to handle errors in decoding
self.byte_encoder = bytes_to_unicode()
self.byte_decoder = {v: k for k, v in self.byte_encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
bpe_merges = merges_handle.read().split("\n")[1:-1]
bpe_merges = [tuple(merge.split()) for merge in bpe_merges]
self.bpe_ranks = dict(zip(bpe_merges, range(len(bpe_merges))))
self.cache = {}
self.add_prefix_space = add_prefix_space
# Should have added re.IGNORECASE so BPE merges can happen for capitalized versions of contractions
self.pat = re.compile(r"""'s|'t|'re|'ve|'m|'ll|'d| ?\p{L}+| ?\p{N}+| ?[^\s\p{L}\p{N}]+|\s+(?!\S)|\s+""")
@property
def vocab_size(self):
return len(self.encoder)
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def bpe(self, token):
if token in self.cache:
return self.cache[token]
word = tuple(token)
pairs = get_pairs(word)
if not pairs:
return token
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
self.cache[token] = word
return word
def _tokenize(self, text):
"""Tokenize a string."""
bpe_tokens = []
for token in re.findall(self.pat, text):
token = "".join(
self.byte_encoder[b] for b in token.encode("utf-8")
) # Maps all our bytes to unicode strings, avoiding control tokens of the BPE (spaces in our case)
bpe_tokens.extend(bpe_token for bpe_token in self.bpe(token).split(" "))
return bpe_tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
text = "".join(tokens)
text = bytearray([self.byte_decoder[c] for c in text]).decode("utf-8", errors=self.errors)
return text
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A BART sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s></s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. BART does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
def prepare_for_tokenization(self, text, is_split_into_words=False, **kwargs):
add_prefix_space = kwargs.pop("add_prefix_space", self.add_prefix_space)
if (is_split_into_words or add_prefix_space) and (len(text) > 0 and not text[0].isspace()):
text = " " + text
return (text, kwargs)
| 17,977 | 41.804762 | 119 | py |
transformers | transformers-main/src/transformers/models/bart/tokenization_bart_fast.py | # coding=utf-8
# Copyright 2020 The Facebook AI Research Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import json
from typing import List, Optional, Tuple
from tokenizers import pre_tokenizers, processors
from ...tokenization_utils_base import AddedToken, BatchEncoding
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_bart import BartTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
# See all BART models at https://huggingface.co/models?filter=bart
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"facebook/bart-base": "https://huggingface.co/facebook/bart-base/resolve/main/vocab.json",
"facebook/bart-large": "https://huggingface.co/facebook/bart-large/resolve/main/vocab.json",
"facebook/bart-large-mnli": "https://huggingface.co/facebook/bart-large-mnli/resolve/main/vocab.json",
"facebook/bart-large-cnn": "https://huggingface.co/facebook/bart-large-cnn/resolve/main/vocab.json",
"facebook/bart-large-xsum": "https://huggingface.co/facebook/bart-large-xsum/resolve/main/vocab.json",
"yjernite/bart_eli5": "https://huggingface.co/yjernite/bart_eli5/resolve/main/vocab.json",
},
"merges_file": {
"facebook/bart-base": "https://huggingface.co/facebook/bart-base/resolve/main/merges.txt",
"facebook/bart-large": "https://huggingface.co/facebook/bart-large/resolve/main/merges.txt",
"facebook/bart-large-mnli": "https://huggingface.co/facebook/bart-large-mnli/resolve/main/merges.txt",
"facebook/bart-large-cnn": "https://huggingface.co/facebook/bart-large-cnn/resolve/main/merges.txt",
"facebook/bart-large-xsum": "https://huggingface.co/facebook/bart-large-xsum/resolve/main/merges.txt",
"yjernite/bart_eli5": "https://huggingface.co/yjernite/bart_eli5/resolve/main/merges.txt",
},
"tokenizer_file": {
"facebook/bart-base": "https://huggingface.co/facebook/bart-base/resolve/main/tokenizer.json",
"facebook/bart-large": "https://huggingface.co/facebook/bart-large/resolve/main/tokenizer.json",
"facebook/bart-large-mnli": "https://huggingface.co/facebook/bart-large-mnli/resolve/main/tokenizer.json",
"facebook/bart-large-cnn": "https://huggingface.co/facebook/bart-large-cnn/resolve/main/tokenizer.json",
"facebook/bart-large-xsum": "https://huggingface.co/facebook/bart-large-xsum/resolve/main/tokenizer.json",
"yjernite/bart_eli5": "https://huggingface.co/yjernite/bart_eli5/resolve/main/tokenizer.json",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"facebook/bart-base": 1024,
"facebook/bart-large": 1024,
"facebook/bart-large-mnli": 1024,
"facebook/bart-large-cnn": 1024,
"facebook/bart-large-xsum": 1024,
"yjernite/bart_eli5": 1024,
}
class BartTokenizerFast(PreTrainedTokenizerFast):
r"""
Construct a "fast" BART tokenizer (backed by HuggingFace's *tokenizers* library), derived from the GPT-2 tokenizer,
using byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import BartTokenizerFast
>>> tokenizer = BartTokenizerFast.from_pretrained("facebook/bart-base")
>>> tokenizer("Hello world")["input_ids"]
[0, 31414, 232, 2]
>>> tokenizer(" Hello world")["input_ids"]
[0, 20920, 232, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer needs to be instantiated with `add_prefix_space=True`.
</Tip>
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the end of sequence.
The token used is the `sep_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (BART tokenizer detect beginning of words by the preceding space).
trim_offsets (`bool`, *optional*, defaults to `True`):
Whether the post processing step should trim offsets to avoid including whitespaces.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = BartTokenizer
def __init__(
self,
vocab_file=None,
merges_file=None,
tokenizer_file=None,
errors="replace",
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
add_prefix_space=False,
trim_offsets=True,
**kwargs,
):
super().__init__(
vocab_file,
merges_file,
tokenizer_file=tokenizer_file,
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
sep_token=sep_token,
cls_token=cls_token,
unk_token=unk_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
trim_offsets=trim_offsets,
**kwargs,
)
pre_tok_state = json.loads(self.backend_tokenizer.pre_tokenizer.__getstate__())
if pre_tok_state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
pre_tok_class = getattr(pre_tokenizers, pre_tok_state.pop("type"))
pre_tok_state["add_prefix_space"] = add_prefix_space
self.backend_tokenizer.pre_tokenizer = pre_tok_class(**pre_tok_state)
self.add_prefix_space = add_prefix_space
# the pre_tokenizer is already updated in the GPT2TokenizerFast `__init__`
tokenizer_component = "post_processor"
tokenizer_component_instance = getattr(self.backend_tokenizer, tokenizer_component, None)
if tokenizer_component_instance:
state = json.loads(tokenizer_component_instance.__getstate__())
# The lists 'sep' and 'cls' must be cased in tuples for the object `post_processor_class`
if "sep" in state:
state["sep"] = tuple(state["sep"])
if "cls" in state:
state["cls"] = tuple(state["cls"])
changes_to_apply = False
if state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
state["add_prefix_space"] = add_prefix_space
changes_to_apply = True
if state.get("trim_offsets", trim_offsets) != trim_offsets:
state["trim_offsets"] = trim_offsets
changes_to_apply = True
if changes_to_apply:
component_class = getattr(processors, state.pop("type"))
new_value = component_class(**state)
setattr(self.backend_tokenizer, tokenizer_component, new_value)
@property
def mask_token(self) -> str:
"""
`str`: Mask token, to use when training a model with masked-language modeling. Log an error if used while not
having been set.
BART tokenizer has a special mask token to be usable in the fill-mask pipeline. The mask token will greedily
comprise the space before the *<mask>*.
"""
if self._mask_token is None:
if self.verbose:
logger.error("Using mask_token, but it is not set yet.")
return None
return str(self._mask_token)
@mask_token.setter
def mask_token(self, value):
"""
Overriding the default behavior of the mask token to have it eat the space before it.
This is needed to preserve backward compatibility with all the previously used models based on Bart.
"""
# Mask token behave like a normal word, i.e. include the space before it
# So we set lstrip to True
value = AddedToken(value, lstrip=True, rstrip=False) if isinstance(value, str) else value
self._mask_token = value
def _batch_encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
if is_split_into_words and not self.add_prefix_space:
raise ValueError(
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._batch_encode_plus(*args, **kwargs)
def _encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
if is_split_into_words and not self.add_prefix_space:
raise ValueError(
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._encode_plus(*args, **kwargs)
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
def build_inputs_with_special_tokens(self, token_ids_0, token_ids_1=None):
output = [self.bos_token_id] + token_ids_0 + [self.eos_token_id]
if token_ids_1 is None:
return output
return output + [self.eos_token_id] + token_ids_1 + [self.eos_token_id]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. BART does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
| 13,812 | 43.993485 | 119 | py |
transformers | transformers-main/src/transformers/models/deit/configuration_deit.py | # coding=utf-8
# Copyright 2021 Facebook AI Research (FAIR) and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" DeiT model configuration"""
from collections import OrderedDict
from typing import Mapping
from packaging import version
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
DEIT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/deit-base-distilled-patch16-224": (
"https://huggingface.co/facebook/deit-base-patch16-224/resolve/main/config.json"
),
# See all DeiT models at https://huggingface.co/models?filter=deit
}
class DeiTConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`DeiTModel`]. It is used to instantiate an DeiT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the DeiT
[facebook/deit-base-distilled-patch16-224](https://huggingface.co/facebook/deit-base-distilled-patch16-224)
architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probabilitiy for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to `224`):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to `16`):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to `3`):
The number of input channels.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
encoder_stride (`int`, `optional`, defaults to 16):
Factor to increase the spatial resolution by in the decoder head for masked image modeling.
Example:
```python
>>> from transformers import DeiTConfig, DeiTModel
>>> # Initializing a DeiT deit-base-distilled-patch16-224 style configuration
>>> configuration = DeiTConfig()
>>> # Initializing a model (with random weights) from the deit-base-distilled-patch16-224 style configuration
>>> model = DeiTModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "deit"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-12,
image_size=224,
patch_size=16,
num_channels=3,
qkv_bias=True,
encoder_stride=16,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.qkv_bias = qkv_bias
self.encoder_stride = encoder_stride
class DeiTOnnxConfig(OnnxConfig):
torch_onnx_minimum_version = version.parse("1.11")
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
return OrderedDict(
[
("pixel_values", {0: "batch", 1: "num_channels", 2: "height", 3: "width"}),
]
)
@property
def atol_for_validation(self) -> float:
return 1e-4
| 5,961 | 39.835616 | 119 | py |
transformers | transformers-main/src/transformers/models/deit/modeling_tf_deit.py | # coding=utf-8
# Copyright 2022 Facebook AI Research (FAIR) and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TensorFlow DeiT model."""
from __future__ import annotations
import collections.abc
import math
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPooling,
TFImageClassifierOutput,
TFMaskedImageModelingOutput,
)
from ...modeling_tf_utils import (
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_deit import DeiTConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "DeiTConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/deit-base-distilled-patch16-224"
_EXPECTED_OUTPUT_SHAPE = [1, 198, 768]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "facebook/deit-base-distilled-patch16-224"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
TF_DEIT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/deit-base-distilled-patch16-224",
# See all DeiT models at https://huggingface.co/models?filter=deit
]
@dataclass
class TFDeiTForImageClassificationWithTeacherOutput(ModelOutput):
"""
Output type of [`DeiTForImageClassificationWithTeacher`].
Args:
logits (`tf.Tensor` of shape `(batch_size, config.num_labels)`):
Prediction scores as the average of the cls_logits and distillation logits.
cls_logits (`tf.Tensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the classification head (i.e. the linear layer on top of the final hidden state of the
class token).
distillation_logits (`tf.Tensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the distillation head (i.e. the linear layer on top of the final hidden state of the
distillation token).
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer plus
the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
logits: tf.Tensor = None
cls_logits: tf.Tensor = None
distillation_logits: tf.Tensor = None
hidden_states: Tuple[tf.Tensor] | None = None
attentions: Tuple[tf.Tensor] | None = None
class TFDeiTEmbeddings(tf.keras.layers.Layer):
"""
Construct the CLS token, distillation token, position and patch embeddings. Optionally, also the mask token.
"""
def __init__(self, config: DeiTConfig, use_mask_token: bool = False, **kwargs) -> None:
super().__init__(**kwargs)
self.config = config
self.use_mask_token = use_mask_token
self.patch_embeddings = TFDeiTPatchEmbeddings(config=config, name="patch_embeddings")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob, name="dropout")
def build(self, input_shape: tf.TensorShape):
self.cls_token = self.add_weight(
shape=(1, 1, self.config.hidden_size),
initializer=tf.keras.initializers.zeros(),
trainable=True,
name="cls_token",
)
self.distillation_token = self.add_weight(
shape=(1, 1, self.config.hidden_size),
initializer=tf.keras.initializers.zeros(),
trainable=True,
name="distillation_token",
)
self.mask_token = None
if self.use_mask_token:
self.mask_token = self.add_weight(
shape=(1, 1, self.config.hidden_size),
initializer=tf.keras.initializers.zeros(),
trainable=True,
name="mask_token",
)
num_patches = self.patch_embeddings.num_patches
self.position_embeddings = self.add_weight(
shape=(1, num_patches + 2, self.config.hidden_size),
initializer=tf.keras.initializers.zeros(),
trainable=True,
name="position_embeddings",
)
super().build(input_shape)
def call(
self, pixel_values: tf.Tensor, bool_masked_pos: tf.Tensor | None = None, training: bool = False
) -> tf.Tensor:
embeddings = self.patch_embeddings(pixel_values)
batch_size, seq_length, _ = shape_list(embeddings)
if bool_masked_pos is not None:
mask_tokens = tf.tile(self.mask_token, [batch_size, seq_length, 1])
# replace the masked visual tokens by mask_tokens
mask = tf.expand_dims(bool_masked_pos, axis=-1)
mask = tf.cast(mask, dtype=mask_tokens.dtype)
embeddings = embeddings * (1.0 - mask) + mask_tokens * mask
cls_tokens = tf.repeat(self.cls_token, repeats=batch_size, axis=0)
distillation_tokens = tf.repeat(self.distillation_token, repeats=batch_size, axis=0)
embeddings = tf.concat((cls_tokens, distillation_tokens, embeddings), axis=1)
embeddings = embeddings + self.position_embeddings
embeddings = self.dropout(embeddings, training=training)
return embeddings
class TFDeiTPatchEmbeddings(tf.keras.layers.Layer):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config: DeiTConfig, **kwargs) -> None:
super().__init__(**kwargs)
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = tf.keras.layers.Conv2D(
hidden_size, kernel_size=patch_size, strides=patch_size, name="projection"
)
def call(self, pixel_values: tf.Tensor) -> tf.Tensor:
batch_size, height, width, num_channels = shape_list(pixel_values)
if tf.executing_eagerly() and num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if tf.executing_eagerly() and (height != self.image_size[0] or width != self.image_size[1]):
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
x = self.projection(pixel_values)
batch_size, height, width, num_channels = shape_list(x)
x = tf.reshape(x, (batch_size, height * width, num_channels))
return x
# Copied from transformers.models.vit.modeling_tf_vit.TFViTSelfAttention with ViT->DeiT
class TFDeiTSelfAttention(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number "
f"of attention heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.sqrt_att_head_size = math.sqrt(self.attention_head_size)
self.query = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = tf.keras.layers.Dropout(rate=config.attention_probs_dropout_prob)
def transpose_for_scores(self, tensor: tf.Tensor, batch_size: int) -> tf.Tensor:
# Reshape from [batch_size, seq_length, all_head_size] to [batch_size, seq_length, num_attention_heads, attention_head_size]
tensor = tf.reshape(tensor=tensor, shape=(batch_size, -1, self.num_attention_heads, self.attention_head_size))
# Transpose the tensor from [batch_size, seq_length, num_attention_heads, attention_head_size] to [batch_size, num_attention_heads, seq_length, attention_head_size]
return tf.transpose(tensor, perm=[0, 2, 1, 3])
def call(
self,
hidden_states: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
batch_size = shape_list(hidden_states)[0]
mixed_query_layer = self.query(inputs=hidden_states)
mixed_key_layer = self.key(inputs=hidden_states)
mixed_value_layer = self.value(inputs=hidden_states)
query_layer = self.transpose_for_scores(mixed_query_layer, batch_size)
key_layer = self.transpose_for_scores(mixed_key_layer, batch_size)
value_layer = self.transpose_for_scores(mixed_value_layer, batch_size)
# Take the dot product between "query" and "key" to get the raw attention scores.
# (batch size, num_heads, seq_len_q, seq_len_k)
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
dk = tf.cast(self.sqrt_att_head_size, dtype=attention_scores.dtype)
attention_scores = tf.divide(attention_scores, dk)
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(logits=attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(inputs=attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = tf.multiply(attention_probs, head_mask)
attention_output = tf.matmul(attention_probs, value_layer)
attention_output = tf.transpose(attention_output, perm=[0, 2, 1, 3])
# (batch_size, seq_len_q, all_head_size)
attention_output = tf.reshape(tensor=attention_output, shape=(batch_size, -1, self.all_head_size))
outputs = (attention_output, attention_probs) if output_attentions else (attention_output,)
return outputs
# Copied from transformers.models.vit.modeling_tf_vit.TFViTSelfOutput with ViT->DeiT
class TFDeiTSelfOutput(tf.keras.layers.Layer):
"""
The residual connection is defined in TFDeiTLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
return hidden_states
# Copied from transformers.models.vit.modeling_tf_vit.TFViTAttention with ViT->DeiT
class TFDeiTAttention(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.self_attention = TFDeiTSelfAttention(config, name="attention")
self.dense_output = TFDeiTSelfOutput(config, name="output")
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
input_tensor: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
self_outputs = self.self_attention(
hidden_states=input_tensor, head_mask=head_mask, output_attentions=output_attentions, training=training
)
attention_output = self.dense_output(
hidden_states=self_outputs[0], input_tensor=input_tensor, training=training
)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_tf_vit.TFViTIntermediate with ViT->DeiT
class TFDeiTIntermediate(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_tf_vit.TFViTOutput with ViT->DeiT
class TFDeiTOutput(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = hidden_states + input_tensor
return hidden_states
class TFDeiTLayer(tf.keras.layers.Layer):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.attention = TFDeiTAttention(config, name="attention")
self.intermediate = TFDeiTIntermediate(config, name="intermediate")
self.deit_output = TFDeiTOutput(config, name="output")
self.layernorm_before = tf.keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="layernorm_before"
)
self.layernorm_after = tf.keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="layernorm_after"
)
def call(
self,
hidden_states: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
attention_outputs = self.attention(
# in DeiT, layernorm is applied before self-attention
input_tensor=self.layernorm_before(inputs=hidden_states, training=training),
head_mask=head_mask,
output_attentions=output_attentions,
training=training,
)
attention_output = attention_outputs[0]
# first residual connection
hidden_states = attention_output + hidden_states
# in DeiT, layernorm is also applied after self-attention
layer_output = self.layernorm_after(inputs=hidden_states, training=training)
intermediate_output = self.intermediate(hidden_states=layer_output, training=training)
# second residual connection is done here
layer_output = self.deit_output(
hidden_states=intermediate_output, input_tensor=hidden_states, training=training
)
outputs = (layer_output,) + attention_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_tf_vit.TFViTEncoder with ViT->DeiT
class TFDeiTEncoder(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.layer = [TFDeiTLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
def call(
self,
hidden_states: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
output_hidden_states: bool,
return_dict: bool,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states=hidden_states,
head_mask=head_mask[i],
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
@keras_serializable
class TFDeiTMainLayer(tf.keras.layers.Layer):
config_class = DeiTConfig
def __init__(
self, config: DeiTConfig, add_pooling_layer: bool = True, use_mask_token: bool = False, **kwargs
) -> None:
super().__init__(**kwargs)
self.config = config
self.embeddings = TFDeiTEmbeddings(config, use_mask_token=use_mask_token, name="embeddings")
self.encoder = TFDeiTEncoder(config, name="encoder")
self.layernorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layernorm")
self.pooler = TFDeiTPooler(config, name="pooler") if add_pooling_layer else None
def get_input_embeddings(self) -> TFDeiTPatchEmbeddings:
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
def get_head_mask(self, head_mask):
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
return head_mask
@unpack_inputs
def call(
self,
pixel_values: tf.Tensor | None = None,
bool_masked_pos: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPooling, Tuple[tf.Tensor, ...]]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# TF 2.0 image layers can't use NCHW format when running on CPU.
# (batch_size, num_channels, height, width) -> (batch_size, height, width, num_channels)
pixel_values = tf.transpose(pixel_values, (0, 2, 3, 1))
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask)
embedding_output = self.embeddings(pixel_values, bool_masked_pos=bool_masked_pos, training=training)
encoder_outputs = self.encoder(
embedding_output,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output, training=training)
pooled_output = self.pooler(sequence_output, training=training) if self.pooler is not None else None
if not return_dict:
head_outputs = (sequence_output, pooled_output) if pooled_output is not None else (sequence_output,)
return head_outputs + encoder_outputs[1:]
return TFBaseModelOutputWithPooling(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
# Copied from transformers.models.vit.modeling_tf_vit.TFViTPreTrainedModel with ViT->DeiT all-casing
class TFDeiTPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DeiTConfig
base_model_prefix = "deit"
main_input_name = "pixel_values"
DEIT_START_DOCSTRING = r"""
This model is a TensorFlow
[tf.keras.layers.Layer](https://www.tensorflow.org/api_docs/python/tf/keras/layers/Layer). Use it as a regular
TensorFlow Module and refer to the TensorFlow documentation for all matter related to general usage and behavior.
Parameters:
config ([`DeiTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DEIT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`DeiTImageProcessor.__call__`] for details.
head_mask (`tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare DeiT Model transformer outputting raw hidden-states without any specific head on top.",
DEIT_START_DOCSTRING,
)
class TFDeiTModel(TFDeiTPreTrainedModel):
def __init__(
self, config: DeiTConfig, add_pooling_layer: bool = True, use_mask_token: bool = False, **kwargs
) -> None:
super().__init__(config, **kwargs)
self.deit = TFDeiTMainLayer(
config, add_pooling_layer=add_pooling_layer, use_mask_token=use_mask_token, name="deit"
)
@unpack_inputs
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPooling,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def call(
self,
pixel_values: tf.Tensor | None = None,
bool_masked_pos: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[Tuple, TFBaseModelOutputWithPooling]:
outputs = self.deit(
pixel_values=pixel_values,
bool_masked_pos=bool_masked_pos,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
# Copied from transformers.models.vit.modeling_tf_vit.TFViTPooler with ViT->DeiT
class TFDeiTPooler(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
class TFDeitPixelShuffle(tf.keras.layers.Layer):
"""TF layer implementation of torch.nn.PixelShuffle"""
def __init__(self, upscale_factor: int, **kwargs) -> None:
super().__init__(**kwargs)
if not isinstance(upscale_factor, int) or upscale_factor < 2:
raise ValueError(f"upscale_factor must be an integer value >= 2 got {upscale_factor}")
self.upscale_factor = upscale_factor
def call(self, x: tf.Tensor) -> tf.Tensor:
hidden_states = x
batch_size, _, _, num_input_channels = shape_list(hidden_states)
block_size_squared = self.upscale_factor**2
output_depth = int(num_input_channels / block_size_squared)
# When the number of output channels >= 2, PyTorch's PixelShuffle and
# TF's depth_to_space differ in their output as the order of channels selected for combining
# is a permutation of the other c.f.
# https://stackoverflow.com/questions/68272502/tf-depth-to-space-not-same-as-torchs-pixelshuffle-when-output-channels-1
permutation = tf.constant(
[[i + j * block_size_squared for i in range(block_size_squared) for j in range(output_depth)]]
)
hidden_states = tf.gather(params=hidden_states, indices=tf.tile(permutation, [batch_size, 1]), batch_dims=-1)
hidden_states = tf.nn.depth_to_space(hidden_states, block_size=self.upscale_factor, data_format="NHWC")
return hidden_states
class TFDeitDecoder(tf.keras.layers.Layer):
def __init__(self, config: DeiTConfig, **kwargs) -> None:
super().__init__(**kwargs)
self.conv2d = tf.keras.layers.Conv2D(
filters=config.encoder_stride**2 * config.num_channels, kernel_size=1, name="0"
)
self.pixel_shuffle = TFDeitPixelShuffle(config.encoder_stride, name="1")
def call(self, inputs: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = inputs
hidden_states = self.conv2d(hidden_states)
hidden_states = self.pixel_shuffle(hidden_states)
return hidden_states
@add_start_docstrings(
"DeiT Model with a decoder on top for masked image modeling, as proposed in"
" [SimMIM](https://arxiv.org/abs/2111.09886).",
DEIT_START_DOCSTRING,
)
class TFDeiTForMaskedImageModeling(TFDeiTPreTrainedModel):
def __init__(self, config: DeiTConfig) -> None:
super().__init__(config)
self.deit = TFDeiTMainLayer(config, add_pooling_layer=False, use_mask_token=True, name="deit")
self.decoder = TFDeitDecoder(config, name="decoder")
@unpack_inputs
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFMaskedImageModelingOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
pixel_values: tf.Tensor | None = None,
bool_masked_pos: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[tuple, TFMaskedImageModelingOutput]:
r"""
bool_masked_pos (`tf.Tensor` of type bool and shape `(batch_size, num_patches)`):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, TFDeiTForMaskedImageModeling
>>> import tensorflow as tf
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> model = TFDeiTForMaskedImageModeling.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> num_patches = (model.config.image_size // model.config.patch_size) ** 2
>>> pixel_values = image_processor(images=image, return_tensors="tf").pixel_values
>>> # create random boolean mask of shape (batch_size, num_patches)
>>> bool_masked_pos = tf.cast(tf.random.uniform((1, num_patches), minval=0, maxval=2, dtype=tf.int32), tf.bool)
>>> outputs = model(pixel_values, bool_masked_pos=bool_masked_pos)
>>> loss, reconstructed_pixel_values = outputs.loss, outputs.reconstruction
>>> list(reconstructed_pixel_values.shape)
[1, 3, 224, 224]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deit(
pixel_values,
bool_masked_pos=bool_masked_pos,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
# Reshape to (batch_size, num_channels, height, width)
sequence_output = sequence_output[:, 1:-1]
batch_size, sequence_length, num_channels = shape_list(sequence_output)
height = width = int(sequence_length**0.5)
sequence_output = tf.reshape(sequence_output, (batch_size, height, width, num_channels))
# Reconstruct pixel values
reconstructed_pixel_values = self.decoder(sequence_output, training=training)
# TF 2.0 image layers can't use NCHW format when running on CPU, so intermediate layers use NHWC,
# including the The decoder. We transpose to compute the loss against the pixel values
# (batch_size, height, width, num_channels) -> (batch_size, num_channels, height, width)
reconstructed_pixel_values = tf.transpose(reconstructed_pixel_values, (0, 3, 1, 2))
masked_im_loss = None
if bool_masked_pos is not None:
size = self.config.image_size // self.config.patch_size
bool_masked_pos = tf.reshape(bool_masked_pos, (-1, size, size))
mask = tf.repeat(bool_masked_pos, self.config.patch_size, 1)
mask = tf.repeat(mask, self.config.patch_size, 2)
mask = tf.expand_dims(mask, 1)
mask = tf.cast(mask, tf.float32)
reconstruction_loss = tf.keras.losses.mean_absolute_error(
# Swap axes as metric calculation reduces over the final dimension
tf.transpose(pixel_values, (1, 2, 3, 0)),
tf.transpose(reconstructed_pixel_values, (1, 2, 3, 0)),
)
reconstruction_loss = tf.expand_dims(reconstruction_loss, 0)
total_loss = tf.reduce_sum(reconstruction_loss * mask)
num_masked_pixels = (tf.reduce_sum(mask) + 1e-5) * self.config.num_channels
masked_im_loss = total_loss / num_masked_pixels
masked_im_loss = tf.reshape(masked_im_loss, (1,))
if not return_dict:
output = (reconstructed_pixel_values,) + outputs[1:]
return ((masked_im_loss,) + output) if masked_im_loss is not None else output
return TFMaskedImageModelingOutput(
loss=masked_im_loss,
reconstruction=reconstructed_pixel_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DeiT Model transformer with an image classification head on top (a linear layer on top of the final hidden state of
the [CLS] token) e.g. for ImageNet.
""",
DEIT_START_DOCSTRING,
)
class TFDeiTForImageClassification(TFDeiTPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config: DeiTConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.deit = TFDeiTMainLayer(config, add_pooling_layer=False, name="deit")
# Classifier head
self.classifier = (
tf.keras.layers.Dense(config.num_labels, name="classifier")
if config.num_labels > 0
else tf.keras.layers.Activation("linear", name="classifier")
)
@unpack_inputs
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFImageClassifierOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
pixel_values: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
labels: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[tf.Tensor, TFImageClassifierOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, TFDeiTForImageClassification
>>> import tensorflow as tf
>>> from PIL import Image
>>> import requests
>>> tf.keras.utils.set_random_seed(3) # doctest: +IGNORE_RESULT
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> # note: we are loading a TFDeiTForImageClassificationWithTeacher from the hub here,
>>> # so the head will be randomly initialized, hence the predictions will be random
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> model = TFDeiTForImageClassification.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> inputs = image_processor(images=image, return_tensors="tf")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = tf.math.argmax(logits, axis=-1)[0]
>>> print("Predicted class:", model.config.id2label[int(predicted_class_idx)])
Predicted class: little blue heron, Egretta caerulea
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deit(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output[:, 0, :])
# we don't use the distillation token
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFImageClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DeiT Model transformer with image classification heads on top (a linear layer on top of the final hidden state of
the [CLS] token and a linear layer on top of the final hidden state of the distillation token) e.g. for ImageNet.
.. warning::
This model supports inference-only. Fine-tuning with distillation (i.e. with a teacher) is not yet
supported.
""",
DEIT_START_DOCSTRING,
)
class TFDeiTForImageClassificationWithTeacher(TFDeiTPreTrainedModel):
def __init__(self, config: DeiTConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.deit = TFDeiTMainLayer(config, add_pooling_layer=False, name="deit")
# Classifier heads
self.cls_classifier = (
tf.keras.layers.Dense(config.num_labels, name="cls_classifier")
if config.num_labels > 0
else tf.keras.layers.Activation("linear", name="cls_classifier")
)
self.distillation_classifier = (
tf.keras.layers.Dense(config.num_labels, name="distillation_classifier")
if config.num_labels > 0
else tf.keras.layers.Activation("linear", name="distillation_classifier")
)
@unpack_inputs
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=TFDeiTForImageClassificationWithTeacherOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def call(
self,
pixel_values: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[tuple, TFDeiTForImageClassificationWithTeacherOutput]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deit(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
cls_logits = self.cls_classifier(sequence_output[:, 0, :])
distillation_logits = self.distillation_classifier(sequence_output[:, 1, :])
# during inference, return the average of both classifier predictions
logits = (cls_logits + distillation_logits) / 2
if not return_dict:
output = (logits, cls_logits, distillation_logits) + outputs[1:]
return output
return TFDeiTForImageClassificationWithTeacherOutput(
logits=logits,
cls_logits=cls_logits,
distillation_logits=distillation_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 42,421 | 41.37962 | 172 | py |
transformers | transformers-main/src/transformers/models/deit/convert_deit_timm_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert DeiT distilled checkpoints from the timm library."""
import argparse
import json
from pathlib import Path
import requests
import timm
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import DeiTConfig, DeiTForImageClassificationWithTeacher, DeiTImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
# here we list all keys to be renamed (original name on the left, our name on the right)
def create_rename_keys(config, base_model=False):
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"blocks.{i}.norm1.weight", f"deit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"blocks.{i}.norm1.bias", f"deit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append((f"blocks.{i}.attn.proj.weight", f"deit.encoder.layer.{i}.attention.output.dense.weight"))
rename_keys.append((f"blocks.{i}.attn.proj.bias", f"deit.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"blocks.{i}.norm2.weight", f"deit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"blocks.{i}.norm2.bias", f"deit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc1.weight", f"deit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc1.bias", f"deit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc2.weight", f"deit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc2.bias", f"deit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
("cls_token", "deit.embeddings.cls_token"),
("dist_token", "deit.embeddings.distillation_token"),
("patch_embed.proj.weight", "deit.embeddings.patch_embeddings.projection.weight"),
("patch_embed.proj.bias", "deit.embeddings.patch_embeddings.projection.bias"),
("pos_embed", "deit.embeddings.position_embeddings"),
]
)
if base_model:
# layernorm + pooler
rename_keys.extend(
[
("norm.weight", "layernorm.weight"),
("norm.bias", "layernorm.bias"),
("pre_logits.fc.weight", "pooler.dense.weight"),
("pre_logits.fc.bias", "pooler.dense.bias"),
]
)
# if just the base model, we should remove "deit" from all keys that start with "deit"
rename_keys = [(pair[0], pair[1][4:]) if pair[1].startswith("deit") else pair for pair in rename_keys]
else:
# layernorm + classification heads
rename_keys.extend(
[
("norm.weight", "deit.layernorm.weight"),
("norm.bias", "deit.layernorm.bias"),
("head.weight", "cls_classifier.weight"),
("head.bias", "cls_classifier.bias"),
("head_dist.weight", "distillation_classifier.weight"),
("head_dist.bias", "distillation_classifier.bias"),
]
)
return rename_keys
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config, base_model=False):
for i in range(config.num_hidden_layers):
if base_model:
prefix = ""
else:
prefix = "deit."
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"blocks.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
@torch.no_grad()
def convert_deit_checkpoint(deit_name, pytorch_dump_folder_path):
"""
Copy/paste/tweak model's weights to our DeiT structure.
"""
# define default DeiT configuration
config = DeiTConfig()
# all deit models have fine-tuned heads
base_model = False
# dataset (fine-tuned on ImageNet 2012), patch_size and image_size
config.num_labels = 1000
repo_id = "huggingface/label-files"
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
config.patch_size = int(deit_name[-6:-4])
config.image_size = int(deit_name[-3:])
# size of the architecture
if deit_name[9:].startswith("tiny"):
config.hidden_size = 192
config.intermediate_size = 768
config.num_hidden_layers = 12
config.num_attention_heads = 3
elif deit_name[9:].startswith("small"):
config.hidden_size = 384
config.intermediate_size = 1536
config.num_hidden_layers = 12
config.num_attention_heads = 6
if deit_name[9:].startswith("base"):
pass
elif deit_name[4:].startswith("large"):
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
# load original model from timm
timm_model = timm.create_model(deit_name, pretrained=True)
timm_model.eval()
# load state_dict of original model, remove and rename some keys
state_dict = timm_model.state_dict()
rename_keys = create_rename_keys(config, base_model)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, base_model)
# load HuggingFace model
model = DeiTForImageClassificationWithTeacher(config).eval()
model.load_state_dict(state_dict)
# Check outputs on an image, prepared by DeiTImageProcessor
size = int(
(256 / 224) * config.image_size
) # to maintain same ratio w.r.t. 224 images, see https://github.com/facebookresearch/deit/blob/ab5715372db8c6cad5740714b2216d55aeae052e/datasets.py#L103
image_processor = DeiTImageProcessor(size=size, crop_size=config.image_size)
encoding = image_processor(images=prepare_img(), return_tensors="pt")
pixel_values = encoding["pixel_values"]
outputs = model(pixel_values)
timm_logits = timm_model(pixel_values)
assert timm_logits.shape == outputs.logits.shape
assert torch.allclose(timm_logits, outputs.logits, atol=1e-3)
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model {deit_name} to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving image processor to {pytorch_dump_folder_path}")
image_processor.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--deit_name",
default="vit_deit_base_distilled_patch16_224",
type=str,
help="Name of the DeiT timm model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model directory."
)
args = parser.parse_args()
convert_deit_checkpoint(args.deit_name, args.pytorch_dump_folder_path)
| 9,217 | 40.9 | 158 | py |
transformers | transformers-main/src/transformers/models/deit/modeling_deit.py | # coding=utf-8
# Copyright 2021 Facebook AI Research (FAIR), Ross Wightman, The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch DeiT model."""
import collections.abc
import math
from dataclasses import dataclass
from typing import Optional, Set, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPooling,
ImageClassifierOutput,
MaskedImageModelingOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_deit import DeiTConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "DeiTConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "facebook/deit-base-distilled-patch16-224"
_EXPECTED_OUTPUT_SHAPE = [1, 198, 768]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "facebook/deit-base-distilled-patch16-224"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
DEIT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/deit-base-distilled-patch16-224",
# See all DeiT models at https://huggingface.co/models?filter=deit
]
class DeiTEmbeddings(nn.Module):
"""
Construct the CLS token, distillation token, position and patch embeddings. Optionally, also the mask token.
"""
def __init__(self, config: DeiTConfig, use_mask_token: bool = False) -> None:
super().__init__()
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.distillation_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.mask_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size)) if use_mask_token else None
self.patch_embeddings = DeiTPatchEmbeddings(config)
num_patches = self.patch_embeddings.num_patches
self.position_embeddings = nn.Parameter(torch.zeros(1, num_patches + 2, config.hidden_size))
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, pixel_values: torch.Tensor, bool_masked_pos: Optional[torch.BoolTensor] = None) -> torch.Tensor:
embeddings = self.patch_embeddings(pixel_values)
batch_size, seq_length, _ = embeddings.size()
if bool_masked_pos is not None:
mask_tokens = self.mask_token.expand(batch_size, seq_length, -1)
# replace the masked visual tokens by mask_tokens
mask = bool_masked_pos.unsqueeze(-1).type_as(mask_tokens)
embeddings = embeddings * (1.0 - mask) + mask_tokens * mask
cls_tokens = self.cls_token.expand(batch_size, -1, -1)
distillation_tokens = self.distillation_token.expand(batch_size, -1, -1)
embeddings = torch.cat((cls_tokens, distillation_tokens, embeddings), dim=1)
embeddings = embeddings + self.position_embeddings
embeddings = self.dropout(embeddings)
return embeddings
class DeiTPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
x = self.projection(pixel_values).flatten(2).transpose(1, 2)
return x
# Copied from transformers.models.vit.modeling_vit.ViTSelfAttention with ViT->DeiT
class DeiTSelfAttention(nn.Module):
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size,} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}."
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.key = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.value = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self, hidden_states, head_mask: Optional[torch.Tensor] = None, output_attentions: bool = False
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTSelfOutput with ViT->DeiT
class DeiTSelfOutput(nn.Module):
"""
The residual connection is defined in DeiTLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTAttention with ViT->DeiT
class DeiTAttention(nn.Module):
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
self.attention = DeiTSelfAttention(config)
self.output = DeiTSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads: Set[int]) -> None:
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.attention.num_attention_heads, self.attention.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(heads)
self.attention.all_head_size = self.attention.attention_head_size * self.attention.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_outputs = self.attention(hidden_states, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTIntermediate with ViT->DeiT
class DeiTIntermediate(nn.Module):
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTOutput with ViT->DeiT
class DeiTOutput(nn.Module):
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTLayer with ViT->DeiT
class DeiTLayer(nn.Module):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = DeiTAttention(config)
self.intermediate = DeiTIntermediate(config)
self.output = DeiTOutput(config)
self.layernorm_before = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.layernorm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_attention_outputs = self.attention(
self.layernorm_before(hidden_states), # in DeiT, layernorm is applied before self-attention
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
# first residual connection
hidden_states = attention_output + hidden_states
# in DeiT, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_states)
outputs = (layer_output,) + outputs
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTEncoder with ViT->DeiT
class DeiTEncoder(nn.Module):
def __init__(self, config: DeiTConfig) -> None:
super().__init__()
self.config = config
self.layer = nn.ModuleList([DeiTLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, BaseModelOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
layer_head_mask,
)
else:
layer_outputs = layer_module(hidden_states, layer_head_mask, output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class DeiTPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DeiTConfig
base_model_prefix = "deit"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
_no_split_modules = []
def _init_weights(self, module: Union[nn.Linear, nn.Conv2d, nn.LayerNorm]) -> None:
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Upcast the input in `fp32` and cast it back to desired `dtype` to avoid
# `trunc_normal_cpu` not implemented in `half` issues
module.weight.data = nn.init.trunc_normal_(
module.weight.data.to(torch.float32), mean=0.0, std=self.config.initializer_range
).to(module.weight.dtype)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module: DeiTEncoder, value: bool = False) -> None:
if isinstance(module, DeiTEncoder):
module.gradient_checkpointing = value
DEIT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`DeiTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DEIT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`DeiTImageProcessor.__call__`] for details.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare DeiT Model transformer outputting raw hidden-states without any specific head on top.",
DEIT_START_DOCSTRING,
)
class DeiTModel(DeiTPreTrainedModel):
def __init__(self, config: DeiTConfig, add_pooling_layer: bool = True, use_mask_token: bool = False) -> None:
super().__init__(config)
self.config = config
self.embeddings = DeiTEmbeddings(config, use_mask_token=use_mask_token)
self.encoder = DeiTEncoder(config)
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.pooler = DeiTPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> DeiTPatchEmbeddings:
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPooling,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
bool_masked_pos: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPooling]:
r"""
bool_masked_pos (`torch.BoolTensor` of shape `(batch_size, num_patches)`, *optional*):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
# TODO: maybe have a cleaner way to cast the input (from `ImageProcessor` side?)
expected_dtype = self.embeddings.patch_embeddings.projection.weight.dtype
if pixel_values.dtype != expected_dtype:
pixel_values = pixel_values.to(expected_dtype)
embedding_output = self.embeddings(pixel_values, bool_masked_pos=bool_masked_pos)
encoder_outputs = self.encoder(
embedding_output,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output)
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
head_outputs = (sequence_output, pooled_output) if pooled_output is not None else (sequence_output,)
return head_outputs + encoder_outputs[1:]
return BaseModelOutputWithPooling(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
# Copied from transformers.models.vit.modeling_vit.ViTPooler with ViT->DeiT
class DeiTPooler(nn.Module):
def __init__(self, config: DeiTConfig):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
@add_start_docstrings(
"""DeiT Model with a decoder on top for masked image modeling, as proposed in [SimMIM](https://arxiv.org/abs/2111.09886).
<Tip>
Note that we provide a script to pre-train this model on custom data in our [examples
directory](https://github.com/huggingface/transformers/tree/main/examples/pytorch/image-pretraining).
</Tip>
""",
DEIT_START_DOCSTRING,
)
class DeiTForMaskedImageModeling(DeiTPreTrainedModel):
def __init__(self, config: DeiTConfig) -> None:
super().__init__(config)
self.deit = DeiTModel(config, add_pooling_layer=False, use_mask_token=True)
self.decoder = nn.Sequential(
nn.Conv2d(
in_channels=config.hidden_size,
out_channels=config.encoder_stride**2 * config.num_channels,
kernel_size=1,
),
nn.PixelShuffle(config.encoder_stride),
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=MaskedImageModelingOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
bool_masked_pos: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, MaskedImageModelingOutput]:
r"""
bool_masked_pos (`torch.BoolTensor` of shape `(batch_size, num_patches)`):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, DeiTForMaskedImageModeling
>>> import torch
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> model = DeiTForMaskedImageModeling.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> num_patches = (model.config.image_size // model.config.patch_size) ** 2
>>> pixel_values = image_processor(images=image, return_tensors="pt").pixel_values
>>> # create random boolean mask of shape (batch_size, num_patches)
>>> bool_masked_pos = torch.randint(low=0, high=2, size=(1, num_patches)).bool()
>>> outputs = model(pixel_values, bool_masked_pos=bool_masked_pos)
>>> loss, reconstructed_pixel_values = outputs.loss, outputs.reconstruction
>>> list(reconstructed_pixel_values.shape)
[1, 3, 224, 224]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deit(
pixel_values,
bool_masked_pos=bool_masked_pos,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
# Reshape to (batch_size, num_channels, height, width)
sequence_output = sequence_output[:, 1:-1]
batch_size, sequence_length, num_channels = sequence_output.shape
height = width = int(sequence_length**0.5)
sequence_output = sequence_output.permute(0, 2, 1).reshape(batch_size, num_channels, height, width)
# Reconstruct pixel values
reconstructed_pixel_values = self.decoder(sequence_output)
masked_im_loss = None
if bool_masked_pos is not None:
size = self.config.image_size // self.config.patch_size
bool_masked_pos = bool_masked_pos.reshape(-1, size, size)
mask = (
bool_masked_pos.repeat_interleave(self.config.patch_size, 1)
.repeat_interleave(self.config.patch_size, 2)
.unsqueeze(1)
.contiguous()
)
reconstruction_loss = nn.functional.l1_loss(pixel_values, reconstructed_pixel_values, reduction="none")
masked_im_loss = (reconstruction_loss * mask).sum() / (mask.sum() + 1e-5) / self.config.num_channels
if not return_dict:
output = (reconstructed_pixel_values,) + outputs[1:]
return ((masked_im_loss,) + output) if masked_im_loss is not None else output
return MaskedImageModelingOutput(
loss=masked_im_loss,
reconstruction=reconstructed_pixel_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DeiT Model transformer with an image classification head on top (a linear layer on top of the final hidden state of
the [CLS] token) e.g. for ImageNet.
""",
DEIT_START_DOCSTRING,
)
class DeiTForImageClassification(DeiTPreTrainedModel):
def __init__(self, config: DeiTConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.deit = DeiTModel(config, add_pooling_layer=False)
# Classifier head
self.classifier = nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ImageClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, ImageClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, DeiTForImageClassification
>>> import torch
>>> from PIL import Image
>>> import requests
>>> torch.manual_seed(3) # doctest: +IGNORE_RESULT
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> # note: we are loading a DeiTForImageClassificationWithTeacher from the hub here,
>>> # so the head will be randomly initialized, hence the predictions will be random
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> model = DeiTForImageClassification.from_pretrained("facebook/deit-base-distilled-patch16-224")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = logits.argmax(-1).item()
>>> print("Predicted class:", model.config.id2label[predicted_class_idx])
Predicted class: magpie
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deit(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output[:, 0, :])
# we don't use the distillation token
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@dataclass
class DeiTForImageClassificationWithTeacherOutput(ModelOutput):
"""
Output type of [`DeiTForImageClassificationWithTeacher`].
Args:
logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores as the average of the cls_logits and distillation logits.
cls_logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the classification head (i.e. the linear layer on top of the final hidden state of the
class token).
distillation_logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the distillation head (i.e. the linear layer on top of the final hidden state of the
distillation token).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
logits: torch.FloatTensor = None
cls_logits: torch.FloatTensor = None
distillation_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@add_start_docstrings(
"""
DeiT Model transformer with image classification heads on top (a linear layer on top of the final hidden state of
the [CLS] token and a linear layer on top of the final hidden state of the distillation token) e.g. for ImageNet.
.. warning::
This model supports inference-only. Fine-tuning with distillation (i.e. with a teacher) is not yet
supported.
""",
DEIT_START_DOCSTRING,
)
class DeiTForImageClassificationWithTeacher(DeiTPreTrainedModel):
def __init__(self, config: DeiTConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.deit = DeiTModel(config, add_pooling_layer=False)
# Classifier heads
self.cls_classifier = (
nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
)
self.distillation_classifier = (
nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DEIT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=DeiTForImageClassificationWithTeacherOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, DeiTForImageClassificationWithTeacherOutput]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deit(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
cls_logits = self.cls_classifier(sequence_output[:, 0, :])
distillation_logits = self.distillation_classifier(sequence_output[:, 1, :])
# during inference, return the average of both classifier predictions
logits = (cls_logits + distillation_logits) / 2
if not return_dict:
output = (logits, cls_logits, distillation_logits) + outputs[1:]
return output
return DeiTForImageClassificationWithTeacherOutput(
logits=logits,
cls_logits=cls_logits,
distillation_logits=distillation_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 38,581 | 41.632044 | 159 | py |
transformers | transformers-main/src/transformers/models/deit/feature_extraction_deit.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for DeiT."""
import warnings
from ...utils import logging
from .image_processing_deit import DeiTImageProcessor
logger = logging.get_logger(__name__)
class DeiTFeatureExtractor(DeiTImageProcessor):
def __init__(self, *args, **kwargs) -> None:
warnings.warn(
"The class DeiTFeatureExtractor is deprecated and will be removed in version 5 of Transformers. Please"
" use DeiTImageProcessor instead.",
FutureWarning,
)
super().__init__(*args, **kwargs)
| 1,172 | 33.5 | 115 | py |
transformers | transformers-main/src/transformers/models/deit/image_processing_deit.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for DeiT."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import center_crop, normalize, rescale, resize, to_channel_dimension_format
from ...image_utils import (
IMAGENET_STANDARD_MEAN,
IMAGENET_STANDARD_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
make_list_of_images,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, is_vision_available, logging
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
class DeiTImageProcessor(BaseImageProcessor):
r"""
Constructs a DeiT image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by
`do_resize` in `preprocess`.
size (`Dict[str, int]` *optional*, defaults to `{"height": 256, "width": 256}`):
Size of the image after `resize`. Can be overridden by `size` in `preprocess`.
resample (`PILImageResampling` filter, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use if resizing the image. Can be overridden by `resample` in `preprocess`.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image. If the input size is smaller than `crop_size` along any edge, the image
is padded with 0's and then center cropped. Can be overridden by `do_center_crop` in `preprocess`.
crop_size (`Dict[str, int]`, *optional*, defaults to `{"height": 224, "width": 224}`):
Desired output size when applying center-cropping. Can be overridden by `crop_size` in `preprocess`.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PIL.Image.BICUBIC,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
rescale_factor: Union[int, float] = 1 / 255,
do_rescale: bool = True,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"height": 256, "width": 256}
size = get_size_dict(size)
crop_size = crop_size if crop_size is not None else {"height": 224, "width": 224}
crop_size = get_size_dict(crop_size, param_name="crop_size")
self.do_resize = do_resize
self.size = size
self.resample = resample
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_STANDARD_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_STANDARD_STD
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PIL.Image.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to `(size["height"], size["width"])` using the specified resampling filter.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image.
resample (`PILImageResampling` filter, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The size dictionary must have keys 'height' and 'width'. Got {size.keys()}")
return resize(
image, size=(size["height"], size["width"]), resample=resample, data_format=data_format, **kwargs
)
def center_crop(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Center crop an image to `(crop_size["height"], crop_size["width"])`. If the input size is smaller than
`crop_size` along any edge, the image is padded with 0's and then center cropped.
Args:
image (`np.ndarray`):
Image to center crop.
size (`Dict[str, int]`):
Size of the output image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The size dictionary must have keys 'height' and 'width'. Got {size.keys()}")
return center_crop(image, size=(size["height"], size["width"]), data_format=data_format, **kwargs)
def rescale(
self,
image: np.ndarray,
scale: Union[int, float],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Rescale an image by a scale factor. image = image * scale.
Args:
image (`np.ndarray`):
Image to rescale.
scale (`int` or `float`):
Scale to apply to the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return rescale(image, scale=scale, data_format=data_format, **kwargs)
def normalize(
self,
image: np.ndarray,
mean: Union[float, List[float]],
std: Union[float, List[float]],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Normalize an image. image = (image - image_mean) / image_std.
Args:
image (`np.ndarray`):
Image to normalize.
image_mean (`float` or `List[float]`):
Image mean.
image_std (`float` or `List[float]`):
Image standard deviation.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return normalize(image, mean=mean, std=std, data_format=data_format, **kwargs)
def preprocess(
self,
images: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
resample=None,
do_center_crop: bool = None,
crop_size: Dict[str, int] = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after `resize`.
resample (`PILImageResampling`, *optional*, defaults to `self.resample`):
PILImageResampling filter to use if resizing the image Only has an effect if `do_resize` is set to
`True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the image after center crop. If one edge the image is smaller than `crop_size`, it will be
padded with zeros and then cropped
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- `None`: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
resample = resample if resample is not None else self.resample
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size = get_size_dict(size)
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size")
images = make_list_of_images(images)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if do_resize and size is None or resample is None:
raise ValueError("Size and resample must be specified if do_resize is True.")
if do_center_crop and crop_size is None:
raise ValueError("Crop size must be specified if do_center_crop is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
if do_normalize and (image_mean is None or image_std is None):
raise ValueError("Image mean and std must be specified if do_normalize is True.")
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if do_resize:
images = [self.resize(image=image, size=size, resample=resample) for image in images]
if do_center_crop:
images = [self.center_crop(image=image, size=crop_size) for image in images]
if do_rescale:
images = [self.rescale(image=image, scale=rescale_factor) for image in images]
if do_normalize:
images = [self.normalize(image=image, mean=image_mean, std=image_std) for image in images]
images = [to_channel_dimension_format(image, data_format) for image in images]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
| 14,866 | 46.196825 | 119 | py |
transformers | transformers-main/src/transformers/models/deit/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_torch_available,
is_vision_available,
)
_import_structure = {"configuration_deit": ["DEIT_PRETRAINED_CONFIG_ARCHIVE_MAP", "DeiTConfig", "DeiTOnnxConfig"]}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_deit"] = ["DeiTFeatureExtractor"]
_import_structure["image_processing_deit"] = ["DeiTImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_deit"] = [
"DEIT_PRETRAINED_MODEL_ARCHIVE_LIST",
"DeiTForImageClassification",
"DeiTForImageClassificationWithTeacher",
"DeiTForMaskedImageModeling",
"DeiTModel",
"DeiTPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_deit"] = [
"TF_DEIT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFDeiTForImageClassification",
"TFDeiTForImageClassificationWithTeacher",
"TFDeiTForMaskedImageModeling",
"TFDeiTModel",
"TFDeiTPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_deit import DEIT_PRETRAINED_CONFIG_ARCHIVE_MAP, DeiTConfig, DeiTOnnxConfig
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_deit import DeiTFeatureExtractor
from .image_processing_deit import DeiTImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_deit import (
DEIT_PRETRAINED_MODEL_ARCHIVE_LIST,
DeiTForImageClassification,
DeiTForImageClassificationWithTeacher,
DeiTForMaskedImageModeling,
DeiTModel,
DeiTPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_deit import (
TF_DEIT_PRETRAINED_MODEL_ARCHIVE_LIST,
TFDeiTForImageClassification,
TFDeiTForImageClassificationWithTeacher,
TFDeiTForMaskedImageModeling,
TFDeiTModel,
TFDeiTPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 3,486 | 29.587719 | 114 | py |
transformers | transformers-main/src/transformers/models/tvlt/image_processing_tvlt.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for TVLT."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
center_crop,
get_resize_output_image_size,
normalize,
rescale,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
IMAGENET_STANDARD_MEAN,
IMAGENET_STANDARD_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
is_valid_image,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, logging
logger = logging.get_logger(__name__)
def make_batched(videos) -> List[List[ImageInput]]:
if isinstance(videos, (list, tuple)) and isinstance(videos[0], (list, tuple)):
return videos
elif isinstance(videos, (list, tuple)) and is_valid_image(videos[0]):
videos_dim = np.array(videos[0]).ndim
if videos_dim == 3:
return [videos]
elif videos_dim == 4:
return videos
elif is_valid_image(videos):
videos_dim = np.array(videos).ndim
if videos_dim == 3:
return [[videos]]
elif videos_dim == 4:
return [videos]
elif videos_dim == 5:
return videos
raise ValueError(f"Could not make batched video from {videos}")
class TvltImageProcessor(BaseImageProcessor):
r"""
Constructs a TVLT image processor.
This processor can be used to prepare either videos or images for the model by converting images to 1-frame videos.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by the
`do_resize` parameter in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"shortest_edge": 224}`):
Size of the output image after resizing. The shortest edge of the image will be resized to
`size["shortest_edge"]` while maintaining the aspect ratio of the original image. Can be overriden by
`size` in the `preprocess` method.
patch_size (`List[int]` *optional*, defaults to [16,16]):
The patch size of image patch embedding.
num_frames (`int` *optional*, defaults to 8):
The maximum number of video frames.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BILINEAR`):
Resampling filter to use if resizing the image. Can be overridden by the `resample` parameter in the
`preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image to the specified `crop_size`. Can be overridden by the `do_center_crop`
parameter in the `preprocess` method.
crop_size (`Dict[str, int]`, *optional*, defaults to `{"height": 224, "width": 224}`):
Size of the image after applying the center crop. Can be overridden by the `crop_size` parameter in the
`preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to 1/255):
Defines the scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter
in the `preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = [
"pixel_values",
"pixel_mask",
"pixel_values_mixed",
"pixel_mask_mixed",
]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
patch_size: List[int] = [16, 16],
num_frames: int = 8,
resample: PILImageResampling = PILImageResampling.BILINEAR,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = IMAGENET_STANDARD_MEAN,
image_std: Optional[Union[float, List[float]]] = IMAGENET_STANDARD_STD,
init_mask_generator=False,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"shortest_edge": 224}
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else {"height": 224, "width": 224}
crop_size = get_size_dict(crop_size, param_name="crop_size")
self.do_resize = do_resize
self.size = size
self.patch_size = patch_size
self.num_frames = num_frames
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean
self.image_std = image_std
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BILINEAR,
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image. If `size` is of the form `{"height": h, "width": w}`, the output image will
have the size `(h, w)`. If `size` is of the form `{"shortest_edge": s}`, the output image will have its
shortest edge of length `s` while keeping the aspect ratio of the original image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BILINEAR`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size, default_to_square=False)
if "shortest_edge" in size:
output_size = get_resize_output_image_size(image, size["shortest_edge"], default_to_square=False)
elif "height" in size and "width" in size:
output_size = (size["height"], size["width"])
else:
raise ValueError(f"Size must have 'height' and 'width' or 'shortest_edge' as keys. Got {size.keys()}")
return resize(image, size=output_size, resample=resample, data_format=data_format, **kwargs)
def center_crop(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Center crop an image to `(size["height"], size["width"])`. If the input size is smaller than `size` along any
edge, the image is padded with 0's and then center cropped.
Args:
image (`np.ndarray`):
Image to center crop.
size (`Dict[str, int]`):
Size of the output image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"Size must have 'height' and 'width' as keys. Got {size.keys()}")
return center_crop(image, size=(size["height"], size["width"]), data_format=data_format, **kwargs)
def rescale(
self,
image: np.ndarray,
scale: Union[int, float],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Rescale an image by a scale factor. image = image * scale.
Args:
image (`np.ndarray`):
Image to rescale.
scale (`int` or `float`):
Scale to apply to the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return rescale(image, scale=scale, data_format=data_format, **kwargs)
# Copied from transformers.models.vit.image_processing_vit.ViTImageProcessor.normalize
def normalize(
self,
image: np.ndarray,
mean: Union[float, List[float]],
std: Union[float, List[float]],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Normalize an image. image = (image - image_mean) / image_std.
Args:
image (`np.ndarray`):
Image to normalize.
mean (`float` or `List[float]`):
Image mean to use for normalization.
std (`float` or `List[float]`):
Image standard deviation to use for normalization.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
Returns:
`np.ndarray`: The normalized image.
"""
return normalize(image, mean=mean, std=std, data_format=data_format, **kwargs)
def _preprocess_image(
self,
image: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: Dict[str, int] = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
data_format: Optional[ChannelDimension] = ChannelDimension.FIRST,
) -> np.ndarray:
"""Preprocesses a single image."""
if do_resize and size is None or resample is None:
raise ValueError("Size and resample must be specified if do_resize is True.")
if do_center_crop and crop_size is None:
raise ValueError("Crop size must be specified if do_center_crop is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
if do_normalize and (image_mean is None or image_std is None):
raise ValueError("Image mean and std must be specified if do_normalize is True.")
# All transformations expect numpy arrays.
image = to_numpy_array(image)
if do_resize:
image = self.resize(image=image, size=size, resample=resample)
if do_center_crop:
image = self.center_crop(image, size=crop_size)
if do_rescale:
image = self.rescale(image=image, scale=rescale_factor)
if do_normalize:
image = self.normalize(image=image, mean=image_mean, std=image_std)
image = to_channel_dimension_format(image, data_format)
return image
def preprocess(
self,
videos: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
patch_size: List[int] = None,
num_frames: int = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: Dict[str, int] = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
is_mixed: bool = False,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
**kwargs,
) -> BatchFeature:
"""
Preprocess an videos or image or batch of videos or images.
Args:
videos (`ImageInput`):
Images or videos to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after applying resize.
patch_size (`List[int]` *optional*, defaults to self.patch_size):
The patch size of image patch embedding.
num_frames (`int` *optional*, defaults to self.num_frames):
The maximum number of video frames.
resample (`PILImageResampling`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`, Only
has an effect if `do_resize` is set to `True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_centre_crop`):
Whether to centre crop the image.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the image after applying the centre crop.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation.
is_mixed (`bool`, *optional*):
If the input video has negative samples.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the inferred channel dimension format of the input image.
Returns:
[`BatchFeature`]: A [`BatchFeature`] with the following fields:
- **pixel_values** -- Pixel values to be fed to a model, of shape (batch_size, num_channels, height,
width).
- **pixel_mask** -- Pixel masks to be fed to a model, of shape (batch_size, num_pixel_patches).
- **pixel_values_mixed** -- Pixel values with both postive or negative to be fed to a model, of shape
(batch_size, num_channels, height, width).
- **pixel_mask_mixed** -- Pixel masks with both postive or negative to be fed to a model, of shape
(batch_size, num_pixel_patches).
"""
do_resize = do_resize if do_resize is not None else self.do_resize
resample = resample if resample is not None else self.resample
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size")
patch_size = patch_size if patch_size is not None else self.patch_size
num_frames = num_frames if patch_size is not None else self.num_frames
if not valid_images(videos):
raise ValueError(
"Invalid image or video type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
videos = make_batched(videos)
# Check number of frames is fewer than maximum frames
for video in videos:
if len(video) > self.num_frames:
raise ValueError(
f"number of frames must not be greater than the maximum frames of the model {self.num_frames}."
)
max_num_frames = max([len(video) for video in videos])
num_patches_per_image = (size["shortest_edge"] // patch_size[0]) ** 2
video_masks = np.array(
[
len(video) * num_patches_per_image * [1] + (max_num_frames - len(video)) * num_patches_per_image * [0]
for video in videos
]
)
videos = [
[
self._preprocess_image(
image=img,
do_resize=do_resize,
size=size,
resample=resample,
do_center_crop=do_center_crop,
crop_size=crop_size,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
data_format=data_format,
)
for img in video
]
for video in videos
]
# If videos contain both positive/negative, use mixed key for video-audio matching task
if is_mixed:
data = {"pixel_values_mixed": videos, "pixel_mask_mixed": video_masks}
else:
data = {"pixel_values": videos, "pixel_mask": video_masks}
return BatchFeature(data=data, tensor_type=return_tensors)
| 20,730 | 44.662996 | 119 | py |
transformers | transformers-main/src/transformers/models/tvlt/processing_tvlt.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for TVLT.
"""
from ...processing_utils import ProcessorMixin
class TvltProcessor(ProcessorMixin):
r"""
Constructs a TVLT processor which wraps a TVLT image processor and TVLT feature extractor into a single processor.
[`TvltProcessor`] offers all the functionalities of [`TvltImageProcessor`] and [`TvltFeatureExtractor`]. See the
docstring of [`~TvltProcessor.__call__`] for more information.
Args:
image_processor (`TvltImageProcessor`):
An instance of [`TvltImageProcessor`]. The image processor is a required input.
feature_extractor (`TvltFeatureExtractor`):
An instance of [`TvltFeatureExtractor`]. The feature extractor is a required input.
"""
attributes = ["image_processor", "feature_extractor"]
image_processor_class = "TvltImageProcessor"
feature_extractor_class = "TvltFeatureExtractor"
def __init__(self, image_processor, feature_extractor):
super().__init__(image_processor=image_processor, feature_extractor=feature_extractor)
self.image_processor = image_processor
self.feature_extractor = feature_extractor
def __call__(
self,
images=None,
audio=None,
images_mixed=None,
sampling_rate=None,
mask_audio=False,
mask_pixel=False,
*args,
**kwargs,
):
"""
Forwards the `images` argument to TvltImageProcessor's [`~TvltImageProcessor.preprocess`] and the `audio`
argument to TvltFeatureExtractor's [`~TvltFeatureExtractor.__call__`]. Please refer to the docstring of the
above two methods for more information.
"""
if images is None and audio is None:
raise ValueError("You need to specify either an `images` or `audio` input to process.")
images_mixed_dict = None
if images is not None:
images_dict = self.image_processor(images, mask_pixel=mask_pixel, *args, **kwargs)
if images_mixed is not None:
images_mixed_dict = self.image_processor(images_mixed, is_mixed=True, *args, **kwargs)
if audio is not None:
audio_dict = self.feature_extractor(
audio, *args, sampling_rate=sampling_rate, mask_audio=mask_audio, **kwargs
)
output_dict = {}
if audio is not None:
output_dict.update(audio_dict)
if images is not None:
output_dict.update(images_dict)
if images_mixed_dict is not None:
output_dict.update(images_mixed_dict)
return output_dict
@property
def model_input_names(self):
image_processor_input_names = self.image_processor.model_input_names
feature_extractor_input_names = self.feature_extractor.model_input_names
return list(dict.fromkeys(image_processor_input_names + feature_extractor_input_names))
| 3,505 | 38.393258 | 118 | py |
transformers | transformers-main/src/transformers/models/tvlt/modeling_tvlt.py | # coding=utf-8
# Copyright 2023 MURGe-Lab and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch TVLT model."""
import collections.abc
import math
from copy import deepcopy
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_tvlt import TvltConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "TvltConfig"
_CHECKPOINT_FOR_DOC = "ZinengTang/tvlt-base"
TVLT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"ZinengTang/tvlt-base",
# See all TVLT models at https://huggingface.co/ZinengTang/tvlt-base
]
@dataclass
class TvltModelOutput(ModelOutput):
"""
Class for TvltModel's outputs, with potential hidden states and attentions.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
last_pixel_hidden_state (`torch.FloatTensor` of shape `(batch_size, pixel_sequence_length, hidden_size)`):
Pixel sequence of hidden-states at the output of the last layer of the model.
last_audio_hidden_state (`torch.FloatTensor` of shape `(batch_size, audio_sequence_length, hidden_size)`):
Audio sequence of hidden-states at the output of the last layer of the model.
pixel_label_masks (`torch.FloatTensor` of shape `(batch_size, pixel_patch_length)`):
Tensor indicating which pixel patches are masked (1) and which are not (0).
audio_label_masks (`torch.FloatTensor` of shape `(batch_size, audio_patch_length)`):
Tensor indicating which audio patches are masked (1) and which are not (0).
pixel_ids_restore (`torch.LongTensor` of shape `(batch_size, pixel_patch_length)`):
Tensor containing the ids permutation of pixel masking.
audio_ids_restore (`torch.LongTensor` of shape `(batch_size, audio_patch_length)`):
Tensor containing the ids permutation of audio masking.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
last_hidden_state: torch.FloatTensor = None
last_pixel_hidden_state: torch.FloatTensor = None
last_audio_hidden_state: torch.FloatTensor = None
pixel_label_masks: torch.LongTensor = None
audio_label_masks: torch.LongTensor = None
pixel_ids_restore: torch.LongTensor = None
audio_ids_restore: torch.LongTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class TvltDecoderOutput(ModelOutput):
"""
Class for TvltDecoder's outputs, with potential hidden states and attentions.
Args:
logits (`torch.FloatTensor` of shape `(batch_size, patch_size ** 2 * num_channels)`):
Pixel reconstruction logits.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class TvltForPreTrainingOutput(ModelOutput):
"""
Class for TvltForPreTraining's outputs, with potential hidden states and attentions.
Args:
loss (`torch.FloatTensor` of shape `(1,)`):
Pixel reconstruction loss.
matching_logits (`torch.FloatTensor` of shape `(batch_size, 1)`):
Matching objective logits.
pixel_logits (`torch.FloatTensor` of shape
`(batch_size, pixel_patch_length, image_patch_size ** 3 * pixel_num_channels)`): Pixel reconstruction
logits.
audio_logits (`torch.FloatTensor` of shape
`(batch_size, audio_patch_length, image_patch_size[0] * image_patch_size[1])`): Audio reconstruction
logits.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
matching_logits: torch.FloatTensor = None
pixel_logits: torch.FloatTensor = None
audio_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
def generate_pixel_mask_noise(pixel_values, pixel_mask=None, mask_ratio=0.75):
"""Generate noise for audio masking."""
batch_size, seq_len = pixel_values.shape[:2]
noise = torch.rand((batch_size, seq_len), device=pixel_values.device) # noise in [0, 1]
len_keep = int(seq_len * (1 - mask_ratio))
return noise, len_keep
def generate_audio_mask_noise(audio_values, audio_mask=None, mask_ratio=0.75, mask_type="patch-level", freq_len=8):
"""Generate noise for audio masking."""
batch_size, seq_len = audio_values.shape[:2]
if mask_type == "frame-level":
num_time_patches = seq_len // freq_len
noise = (
torch.rand(batch_size, num_time_patches, device=audio_values.device)
.unsqueeze(-1)
.repeat(1, 1, freq_len)
.view(batch_size, seq_len)
) # noise in [0, 1]
elif mask_type == "patch-level":
noise = torch.rand(batch_size, seq_len, device=audio_values.device) # noise in [0, 1]
len_keep = int(seq_len * (1 - mask_ratio))
return noise, len_keep
def random_masking(sequence, noise, len_keep, attention_masks=None):
"""
Perform random masking by per-sample shuffling on frame-level. Per-sample shuffling is done by argsort random
noise. sequence: [batch_size, seq_len, hidden_dim], sequence
"""
batch_size, seq_len, hidden_dim = sequence.shape
# sort noise for each sample
ids_shuffle = torch.argsort(noise, dim=1) # ascend: small is keep, large is remove
ids_restore = torch.argsort(ids_shuffle, dim=1)
# keep the first subset
ids_keep = ids_shuffle[:, :len_keep]
sequence_masked = torch.gather(sequence, dim=1, index=ids_keep.unsqueeze(-1).repeat(1, 1, hidden_dim))
# generate the binary mask: 0 is keep, 1 is remove
label_masks = torch.ones([batch_size, seq_len], device=sequence.device)
label_masks[:, :len_keep] = 0
# unshuffle to get the binary mask
label_masks = torch.gather(label_masks, dim=1, index=ids_restore)
if attention_masks is not None:
label_masks *= attention_masks
attention_masks = torch.gather(attention_masks, dim=1, index=ids_keep)
return sequence_masked, attention_masks, label_masks, ids_restore
class TvltPixelEmbeddings(nn.Module):
"""Construct the patch and position embeddings."""
def __init__(self, config):
super().__init__()
self.patch_embeddings = TvltPixelPatchEmbeddings(config)
self.num_patches_per_image = self.patch_embeddings.num_patches_per_image
self.type_embed_v = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.temporal_embed = nn.Parameter(torch.zeros(1, config.num_frames, config.hidden_size))
self.pos_embed_v = nn.Parameter(torch.zeros(1, self.num_patches_per_image, config.hidden_size))
self.config = config
def forward(self, pixel_values, attention_masks=None):
# create patch embeddings
batch_size, num_frames, num_channels, height, width = pixel_values.shape
embeddings = self.patch_embeddings(pixel_values)
embeddings += self.pos_embed_v.repeat(1, num_frames, 1)
embeddings += torch.repeat_interleave(self.temporal_embed[:, :num_frames], self.num_patches_per_image, dim=1)
embeddings += self.type_embed_v
return embeddings, attention_masks
class TvltAudioEmbeddings(nn.Module):
"""Construct the patch and position embeddings."""
def __init__(self, config):
super().__init__()
self.patch_embeddings = TvltAudioPatchEmbeddings(config)
self.num_patches = self.patch_embeddings.num_patches
self.type_embed_a = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.num_freq_patches = config.frequency_length // config.audio_patch_size[1]
self.pos_embed_a = nn.Parameter(torch.zeros(1, self.num_patches // self.num_freq_patches, config.hidden_size))
self.freq_embed = nn.Parameter(torch.zeros(1, self.num_freq_patches, config.hidden_size))
self.num_freq_patches = config.frequency_length // config.audio_patch_size[1]
self.config = config
def forward(self, audio_values, attention_masks=None):
# create patch embeddings
embeddings = self.patch_embeddings(audio_values)
num_time_patches = embeddings.size(1) // self.num_freq_patches
embeddings += self.freq_embed.repeat(1, num_time_patches, 1)
embeddings += torch.repeat_interleave(self.pos_embed_a[:, :num_time_patches], self.num_freq_patches, dim=1)
embeddings += self.type_embed_a
return embeddings, attention_masks
class TvltPixelPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.image_patch_size
num_channels, hidden_size = config.num_image_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches_per_image = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches_per_image = num_patches_per_image
self.hidden_size = hidden_size
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
batch_size, num_frames, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
pixel_values = pixel_values.reshape(batch_size * num_frames, num_channels, height, width)
embeddings = self.projection(pixel_values).flatten(2).transpose(1, 2)
embeddings = embeddings.reshape(batch_size, num_frames * self.num_patches_per_image, self.hidden_size)
return embeddings
class TvltAudioPatchEmbeddings(nn.Module):
"""
This class turns `audio_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
spectrogram_length, frequency_length, patch_size = (
config.spectrogram_length,
config.frequency_length,
config.audio_patch_size,
)
num_channels, hidden_size = config.num_audio_channels, config.hidden_size
spectrogram_size = (spectrogram_length, frequency_length)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (spectrogram_size[1] // patch_size[1]) * (spectrogram_size[0] // patch_size[0])
patch_shape = (spectrogram_size[0] // patch_size[0], spectrogram_size[1] // patch_size[1])
self.spectrogram_size = spectrogram_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.patch_shape = patch_shape
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, audio_values: torch.Tensor) -> torch.Tensor:
batch_size, num_channels, height, width = audio_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if height > self.spectrogram_size[0] or width != self.spectrogram_size[1]:
raise ValueError(
f"Input audio size ({height}*{width}) doesn't match model"
f" ({self.spectrogram_size[0]}*{self.spectrogram_size[1]})."
)
embeddings = self.projection(audio_values).flatten(2).transpose(1, 2)
return embeddings
# Copied from transformers.models.vilt.modeling_vilt.ViltSelfAttention with Vilt->Tvlt
class TvltSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size,} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}."
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.key = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.value = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(self, hidden_states, attention_mask=None, head_mask=None, output_attentions=False):
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.Softmax(dim=-1)(attention_scores)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
# Copied from transformers.models.vilt.modeling_vilt.ViltSelfOutput with Vilt->Tvlt
class TvltSelfOutput(nn.Module):
"""
The residual connection is defined in TvltLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: TvltConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.vilt.modeling_vilt.ViltAttention with Vilt->Tvlt
class TvltAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = TvltSelfAttention(config)
self.output = TvltSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.attention.num_attention_heads, self.attention.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(heads)
self.attention.all_head_size = self.attention.attention_head_size * self.attention.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(self, hidden_states, attention_mask=None, head_mask=None, output_attentions=False):
self_outputs = self.attention(hidden_states, attention_mask, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vilt.modeling_vilt.ViltIntermediate with Vilt->Tvlt
class TvltIntermediate(nn.Module):
def __init__(self, config: TvltConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vilt.modeling_vilt.ViltOutput with Vilt->Tvlt
class TvltOutput(nn.Module):
def __init__(self, config: TvltConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
# Copied from transformers.models.vilt.modeling_vilt.ViltLayer with Vilt->Tvlt
class TvltLayer(nn.Module):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TvltAttention(config)
self.intermediate = TvltIntermediate(config)
self.output = TvltOutput(config)
self.layernorm_before = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.layernorm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states, attention_mask=None, head_mask=None, output_attentions=False):
self_attention_outputs = self.attention(
self.layernorm_before(hidden_states), # in ViLT, layernorm is applied before self-attention
attention_mask,
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
# first residual connection
hidden_states = attention_output + hidden_states.to(attention_output.device)
# in ViLT, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_states)
outputs = (layer_output,) + outputs
return outputs
# Copied from transformers.models.vilt.modeling_vilt.ViltEncoder with Vilt->Tvlt
class TvltEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([TvltLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
)
else:
layer_outputs = layer_module(hidden_states, attention_mask, layer_head_mask, output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class TvltPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = TvltConfig
base_model_prefix = "tvlt"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, TvltEncoder):
module.gradient_checkpointing = value
TVLT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`TvltConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
TVLT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_frames, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`TvltProcessor`]. See [`TvltProcessor.__call__`] for
details.
audio_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Audio values. Audio values can be obtained using [`TvltProcessor`]. See [`TvltProcessor.__call__`] for
details.
pixel_mask (`torch.FloatTensor` of shape `(batch_size, num_pixel_patches)`):
Pixel masks. Pixel masks can be obtained using [`TvltProcessor`]. See [`TvltProcessor.__call__`] for
details.
audio_mask (`torch.FloatTensor` of shape `(batch_size, num_audio_patches)`):
Audio masks. Audio masks can be obtained using [`TvltProcessor`]. See [`TvltProcessor.__call__`] for
details.
pixel_values_mixed (`torch.FloatTensor` of shape `(batch_size, num_frames, num_channels, height, width)`):
Pixel values that mix positive and negative samples in Tvlt vision-audio matching. Pixel values mixed can
be obtained using [`TvltProcessor`]. See [`TvltProcessor.__call__`] for details.
pixel_mask_mixed (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel masks of pixel_values_mixed. Pixel masks mixed can be obtained using [`TvltProcessor`]. See
[`TvltProcessor.__call__`] for details.
mask_pixel (`bool`, *optional*):
Whether to mask pixel for MAE tasks. Only set to True in TvltForPreTraining.
mask_audio (`bool`, *optional*):
Whether to mask audio for MAE tasks. Only set to True in TvltForPreTraining.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare TVLT Model transformer outputting raw hidden-states without any specific head on top.",
TVLT_START_DOCSTRING,
)
class TvltModel(TvltPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.pixel_embeddings = TvltPixelEmbeddings(config)
self.audio_embeddings = TvltAudioEmbeddings(config)
self.encoder = TvltEncoder(config)
self.cls_embedding = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
if config.use_mean_pooling:
self.layernorm = None
else:
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.pixel_embeddings.patch_embeddings, self.audio_embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(TVLT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TvltModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values,
audio_values,
pixel_mask=None,
audio_mask=None,
mask_pixel=False,
mask_audio=False,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
) -> Union[tuple, TvltModelOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import TvltProcessor, TvltModel
>>> import numpy as np
>>> import torch
>>> num_frames = 8
>>> images = list(np.random.randn(num_frames, 3, 224, 224))
>>> audio = list(np.random.randn(10000))
>>> processor = TvltProcessor.from_pretrained("ZinengTang/tvlt-base")
>>> model = TvltModel.from_pretrained("ZinengTang/tvlt-base")
>>> input_dict = processor(images, audio, sampling_rate=44100, return_tensors="pt")
>>> outputs = model(**input_dict)
>>> loss = outputs.loss
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
pixel_embedding_output, pixel_mask = self.pixel_embeddings(pixel_values, pixel_mask)
audio_embedding_output, audio_mask = self.audio_embeddings(audio_values, audio_mask)
# Mask pixel if mask_pixel is True
pixel_label_masks = None
pixel_ids_restore = None
if mask_pixel:
pixel_mask_noise, pixel_len_keep = generate_pixel_mask_noise(
pixel_embedding_output, pixel_mask=pixel_mask, mask_ratio=self.config.pixel_mask_ratio
)
pixel_embedding_output, pixel_mask, pixel_label_masks, pixel_ids_restore = random_masking(
pixel_embedding_output,
pixel_mask_noise,
pixel_len_keep,
attention_masks=pixel_mask,
)
# Mask audio if mask_audio is True
audio_label_masks = None
audio_ids_restore = None
if mask_audio:
num_freq_patches = self.config.frequency_length // self.config.audio_patch_size[1]
audio_mask_noise, audio_len_keep = generate_audio_mask_noise(
audio_embedding_output,
audio_mask=audio_mask,
mask_ratio=self.config.audio_mask_ratio,
mask_type=self.config.audio_mask_type,
freq_len=num_freq_patches,
)
audio_embedding_output, audio_mask, audio_label_masks, audio_ids_restore = random_masking(
audio_embedding_output,
audio_mask_noise,
audio_len_keep,
attention_masks=audio_mask,
)
# Prepare for encoder inputs and attention masks
batch_size = pixel_values.size(0)
embedding_output = torch.cat(
[self.cls_embedding.repeat(batch_size, 1, 1), pixel_embedding_output, audio_embedding_output], 1
)
masked_pixel_len = pixel_embedding_output.size(1)
attention_mask = None
if pixel_mask is not None and audio_mask is not None:
attention_mask = torch.cat([pixel_mask[:, :1], pixel_mask, audio_mask], 1)
input_shape = embedding_output.size()
extended_attention_mask = None
if attention_mask is not None:
extended_attention_mask = self.get_extended_attention_mask(attention_mask, input_shape)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
if self.layernorm is not None:
sequence_output = self.layernorm(sequence_output)
pixel_sequence_output = sequence_output[:, 1 : 1 + masked_pixel_len]
audio_sequence_output = sequence_output[:, 1 + masked_pixel_len :]
if not return_dict:
return (
sequence_output,
pixel_sequence_output,
audio_sequence_output,
pixel_label_masks,
audio_label_masks,
pixel_ids_restore,
audio_ids_restore,
) + encoder_outputs[1:]
return TvltModelOutput(
last_hidden_state=sequence_output,
last_pixel_hidden_state=pixel_sequence_output,
last_audio_hidden_state=audio_sequence_output,
pixel_label_masks=pixel_label_masks,
audio_label_masks=audio_label_masks,
pixel_ids_restore=pixel_ids_restore,
audio_ids_restore=audio_ids_restore,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TvltDecoder(nn.Module):
def __init__(self, config):
super().__init__()
decoder_config = deepcopy(config)
decoder_config.hidden_size = config.decoder_hidden_size
decoder_config.num_hidden_layers = config.decoder_num_hidden_layers
decoder_config.num_attention_heads = config.decoder_num_attention_heads
decoder_config.intermediate_size = config.decoder_intermediate_size
self.decoder_layers = nn.ModuleList(
[TvltLayer(decoder_config) for _ in range(config.decoder_num_hidden_layers)]
)
self.layernorm = nn.LayerNorm(config.decoder_hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
self.config = config
def forward(
self,
hidden_states,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
# apply Transformer layers (blocks)
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.decoder_layers):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
None,
)
else:
layer_outputs = layer_module(hidden_states, output_attentions=output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# predictor projection
logits = self.layernorm(hidden_states)
if not return_dict:
return tuple(v for v in [logits, all_hidden_states, all_self_attentions] if v is not None)
return TvltDecoderOutput(logits=logits, hidden_states=all_hidden_states, attentions=all_self_attentions)
@add_start_docstrings(
"The TVLT Model transformer with the decoder on top for self-supervised pre-training.",
TVLT_START_DOCSTRING,
)
class TvltForPreTraining(TvltPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.task_matching = config.task_matching
self.task_mae = config.task_mae
if not (self.task_matching or self.task_mae):
raise ValueError("Must set at least one of matching task and MAE task to true")
self.tvlt = TvltModel(config)
if self.task_matching:
self.matching_head = TvltMatchingHead(config)
if self.task_mae:
self.encoder_to_decoder = nn.Linear(config.hidden_size, config.decoder_hidden_size, bias=True)
self.pixel_mask_token = nn.Parameter(torch.zeros(1, 1, config.decoder_hidden_size))
self.audio_mask_token = nn.Parameter(torch.zeros(1, 1, config.decoder_hidden_size))
self.decoder = TvltDecoder(config)
decoder_hidden_size = config.decoder_hidden_size
num_frames = config.num_frames
num_patches_per_image = self.tvlt.pixel_embeddings.num_patches_per_image
self.decoder_pixel_pos_embed = nn.Parameter(torch.zeros(1, num_patches_per_image, decoder_hidden_size))
self.decoder_temporal_embed = nn.Parameter(torch.zeros(1, config.num_frames, decoder_hidden_size))
self.decoder_pixel_type_embed = nn.Parameter(torch.zeros(1, 1, decoder_hidden_size))
num_audio_patches = self.tvlt.audio_embeddings.num_patches
num_freq_patches = config.frequency_length // config.audio_patch_size[1]
self.decoder_audio_pos_embed = nn.Parameter(
torch.zeros(1, num_audio_patches // num_freq_patches, decoder_hidden_size)
)
self.decoder_freq_embed = nn.Parameter(torch.zeros(1, num_freq_patches, decoder_hidden_size))
self.decoder_audio_type_embed = nn.Parameter(torch.zeros(1, 1, decoder_hidden_size))
pixel_mae_output_dim = self.config.image_patch_size[0] ** 2 * self.config.num_image_channels
self.pixel_mae_head = TvltMAEHead(config, pixel_mae_output_dim)
audio_mae_output_dim = (
self.config.audio_patch_size[0] * self.config.audio_patch_size[1] * self.config.num_audio_channels
)
self.audio_mae_head = TvltMAEHead(config, audio_mae_output_dim)
self.num_frames = num_frames
self.num_patches_per_image = num_patches_per_image
self.num_freq_patches = num_freq_patches
self.image_patch_size = config.image_patch_size
self.audio_patch_size = config.audio_patch_size
# Initialize weights and apply final processing
self.post_init()
def patchify_pixel(self, pixel_values):
"""
pixel_values: [batch_size, num_frames, 3, height, width]
"""
batch_size, num_frames, num_channels, height, width = pixel_values.shape
num_patches_height = pixel_values.shape[3] // self.image_patch_size[0]
num_patches_width = pixel_values.shape[4] // self.image_patch_size[1]
patchified_pixel_values = pixel_values.reshape(
shape=(
batch_size,
num_frames,
num_channels,
num_patches_height,
self.image_patch_size[0],
num_patches_width,
self.image_patch_size[1],
)
)
patchified_pixel_values = torch.einsum("ntchpwq->nthwpqc", patchified_pixel_values)
patchified_pixel_values = patchified_pixel_values.reshape(
shape=(
batch_size,
num_patches_height * num_patches_width * num_frames,
self.image_patch_size[0] * self.image_patch_size[1] * num_channels,
)
)
return patchified_pixel_values
def patchify_audio(self, audio_values):
"""
audio_values: [batch_size, 1, height, width]
"""
batch_size, num_channels, height, width = audio_values.shape
num_patches_height = height // self.audio_patch_size[0]
num_patches_width = width // self.audio_patch_size[1]
patchified_audio_values = audio_values.reshape(
shape=(
batch_size,
num_channels,
num_patches_height,
self.audio_patch_size[0],
num_patches_width,
self.audio_patch_size[1],
)
)
patchified_audio_values = torch.einsum("nchpwq->nhwpqc", patchified_audio_values)
patchified_audio_values = patchified_audio_values.reshape(
shape=(
batch_size,
num_patches_height * num_patches_width,
self.audio_patch_size[0] * self.audio_patch_size[1] * num_channels,
)
)
return patchified_audio_values
def pixel_mae_loss(self, pixel_values, pixel_predictions, mask):
patchified_pixel_values = self.patchify_pixel(pixel_values)
loss = (pixel_predictions - patchified_pixel_values) ** 2
loss = loss.mean(dim=-1) # [batch_size, pixel_pixel_length], mean loss per patch
loss = (loss * mask).sum() / mask.sum() # mean loss on removed patches
return loss
def audio_mae_loss(self, audio_values, audio_predictions, mask):
patchified_audio_values = self.patchify_audio(audio_values)
loss = (audio_predictions - patchified_audio_values) ** 2
loss = loss.mean(dim=-1) # [batch_size, audio_pixel_length], mean loss per patch
loss = (loss * mask).sum() / mask.sum() # mean loss on removed patches
return loss
def concatenate_mask(self, mask_token, sequence, ids_restore):
batch_size, seq_length, dim = sequence.shape
mask_tokens = mask_token.repeat(batch_size, ids_restore.shape[1] - seq_length, 1)
padded_sequence = torch.cat([sequence, mask_tokens], dim=1)
padded_sequence = torch.gather(
padded_sequence, dim=1, index=ids_restore.unsqueeze(-1).repeat(1, 1, dim)
) # unshuffle
return padded_sequence
@add_start_docstrings_to_model_forward(TVLT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TvltForPreTrainingOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values,
audio_values,
pixel_mask=None,
audio_mask=None,
labels=None,
pixel_values_mixed=None,
pixel_mask_mixed=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
) -> Union[tuple, TvltForPreTrainingOutput]:
r"""
pixel_values_mixed (`torch.FloatTensor` of shape `(batch_size, num_frames, num_channels, height, width)`):
Pixel values that mix positive and negative samples in Tvlt vision-audio matching. Audio values can be
obtained using [`TvltProcessor`]. See [`TvltProcessor.__call__`] for details.
pixel_mask_mixed (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel masks of pixel_values_mixed. Pixel values mixed can be obtained using [`TvltProcessor`]. See
[`TvltProcessor.__call__`] for details.
labels (`torch.LongTensor` of shape `(batch_size, num_labels)`, *optional*):
Labels for computing the vision audio matching loss. Indices should be in `[0, 1]`. num_labels has to be 1.
Return:
Examples:
```python
>>> from transformers import TvltProcessor, TvltForPreTraining
>>> import numpy as np
>>> import torch
>>> num_frames = 8
>>> images = list(np.random.randn(num_frames, 3, 224, 224))
>>> images_mixed = list(np.random.randn(num_frames, 3, 224, 224))
>>> audio = list(np.random.randn(10000))
>>> processor = TvltProcessor.from_pretrained("ZinengTang/tvlt-base")
>>> model = TvltForPreTraining.from_pretrained("ZinengTang/tvlt-base")
>>> input_dict = processor(
... images, audio, images_mixed, sampling_rate=44100, mask_pixel=True, mask_audio=True, return_tensors="pt"
... )
>>> outputs = model(**input_dict)
>>> loss = outputs.loss
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
total_loss = 0.0
if self.task_matching:
if labels is None:
raise ValueError("Matching task requires labels")
if pixel_values_mixed is None:
raise ValueError("Matching task requires pixel_values_mixed")
outputs = self.tvlt(
pixel_values_mixed,
audio_values,
pixel_mask=pixel_mask_mixed,
audio_mask=audio_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
matching_logits = self.matching_head(sequence_output)
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(matching_logits.view(-1), labels.view(-1))
total_loss += loss
pixel_logits = None
audio_logits = None
if self.task_mae and self.training:
outputs = self.tvlt(
pixel_values,
audio_values,
pixel_mask=pixel_mask,
audio_mask=audio_mask,
mask_pixel=True,
mask_audio=True,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pixel_sequence_output = outputs.last_pixel_hidden_state if return_dict else outputs[1]
audio_sequence_output = outputs.last_audio_hidden_state if return_dict else outputs[2]
pixel_label_masks = outputs.pixel_label_masks if return_dict else outputs[3]
audio_label_masks = outputs.audio_label_masks if return_dict else outputs[4]
pixel_ids_restore = outputs.pixel_ids_restore if return_dict else outputs[5]
audio_ids_restore = outputs.audio_ids_restore if return_dict else outputs[6]
pixel_decoder_input = self.encoder_to_decoder(
pixel_sequence_output
) # [batch_size, num_masked_pixel_patches, decoder_hidden_size]
audio_decoder_input = self.encoder_to_decoder(
audio_sequence_output
) # [batch_size, num_masked_audio_patches, decoder_hidden_size]
num_frames = pixel_values.size(1)
pixel_decoder_input = self.concatenate_mask(self.pixel_mask_token, pixel_decoder_input, pixel_ids_restore)
pixel_decoder_input = pixel_decoder_input + self.decoder_pixel_pos_embed.repeat(1, num_frames, 1)
pixel_decoder_input = pixel_decoder_input + torch.repeat_interleave(
self.decoder_temporal_embed[:, :num_frames], self.num_patches_per_image, dim=1
)
pixel_decoder_input = pixel_decoder_input + self.decoder_pixel_type_embed
pixel_decoder_outputs = self.decoder(pixel_decoder_input)
pixel_logits = self.pixel_mae_head(pixel_decoder_outputs.logits)
audio_decoder_input = self.concatenate_mask(self.audio_mask_token, audio_decoder_input, audio_ids_restore)
num_time_patches = audio_decoder_input.size(1) // self.num_freq_patches
audio_decoder_input = audio_decoder_input + self.decoder_freq_embed.repeat(1, num_time_patches, 1)
audio_decoder_input = audio_decoder_input + torch.repeat_interleave(
self.decoder_audio_pos_embed[:, :num_time_patches], self.num_freq_patches, dim=1
)
audio_decoder_input = audio_decoder_input + self.decoder_audio_type_embed
audio_decoder_outputs = self.decoder(audio_decoder_input)
audio_logits = self.audio_mae_head(audio_decoder_outputs.logits)
loss = self.pixel_mae_loss(pixel_values, pixel_logits, pixel_label_masks) + self.audio_mae_loss(
audio_values, audio_logits, audio_label_masks
)
total_loss += loss
if not return_dict:
output = (matching_logits, pixel_logits, audio_logits) + outputs[7:]
return ((total_loss,) + output) if loss is not None else output
return TvltForPreTrainingOutput(
loss=total_loss,
matching_logits=matching_logits,
pixel_logits=pixel_logits,
audio_logits=audio_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class TvltPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class TvltMatchingHead(nn.Module):
def __init__(self, config):
super().__init__()
self.pooler = TvltPooler(config)
self.fc = nn.Linear(config.hidden_size, 1)
def forward(self, hidden_states):
hidden_states = self.fc(self.pooler(hidden_states))
return hidden_states
class TvltMAEHead(nn.Module):
def __init__(self, config, output_dim=None):
super().__init__()
self.config = config
self.decoder = nn.Linear(config.decoder_hidden_size, output_dim)
def forward(self, hidden_states):
hidden_states = self.decoder(hidden_states)
return hidden_states
@add_start_docstrings(
"""
Tvlt Model transformer with a classifier head on top (an MLP on top of the final hidden state of the [CLS] token)
for audiovisual classification tasks, e.g. CMU-MOSEI Sentiment Analysis and Audio to Video Retrieval.
""",
TVLT_START_DOCSTRING,
)
class TvltForAudioVisualClassification(TvltPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.tvlt = TvltModel(config)
# Classifier head
self.classifier = nn.Sequential(
nn.Linear(config.hidden_size, config.hidden_size * 2),
nn.LayerNorm(config.hidden_size * 2, eps=config.layer_norm_eps),
nn.GELU(),
nn.Linear(config.hidden_size * 2, config.num_labels),
)
self.config = config
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(TVLT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=SequenceClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values,
audio_values,
pixel_mask=None,
audio_mask=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
) -> Union[tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, num_labels)`, *optional*):
Labels for computing the audiovisual loss. Indices should be in `[0, ..., num_classes-1]` where num_classes
refers to the number of classes in audiovisual tasks.
Return:
Examples:
```python
>>> from transformers import TvltProcessor, TvltForAudioVisualClassification
>>> import numpy as np
>>> import torch
>>> num_frames = 8
>>> images = list(np.random.randn(num_frames, 3, 224, 224))
>>> audio = list(np.random.randn(10000))
>>> processor = TvltProcessor.from_pretrained("ZinengTang/tvlt-base")
>>> model = TvltForAudioVisualClassification.from_pretrained("ZinengTang/tvlt-base")
>>> input_dict = processor(images, audio, sampling_rate=44100, return_tensors="pt")
>>> outputs = model(**input_dict)
>>> loss = outputs.loss
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.tvlt(
pixel_values,
audio_values,
pixel_mask=pixel_mask,
audio_mask=audio_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0][:, 0]
logits = self.classifier(sequence_output) # rank value
loss = None
if labels is not None:
if self.config.loss_type == "regression":
loss_fct = MSELoss()
loss = loss_fct(logits, labels)
elif self.config.loss_type == "classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[4:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 57,262 | 42.446889 | 159 | py |
transformers | transformers-main/src/transformers/models/tvlt/__init__.py | # flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_torch_available,
is_vision_available,
)
_import_structure = {
"configuration_tvlt": ["TVLT_PRETRAINED_CONFIG_ARCHIVE_MAP", "TvltConfig"],
"feature_extraction_tvlt": ["TvltFeatureExtractor"],
"processing_tvlt": ["TvltProcessor"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tvlt"] = [
"TVLT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TvltModel",
"TvltForPreTraining",
"TvltForAudioVisualClassification",
"TvltPreTrainedModel",
]
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_tvlt"] = ["TvltImageProcessor"]
if TYPE_CHECKING:
from .configuration_tvlt import TVLT_PRETRAINED_CONFIG_ARCHIVE_MAP, TvltConfig
from .processing_tvlt import TvltProcessor
from .feature_extraction_tvlt import TvltFeatureExtractor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tvlt import (
TVLT_PRETRAINED_MODEL_ARCHIVE_LIST,
TvltForAudioVisualClassification,
TvltForPreTraining,
TvltModel,
TvltPreTrainedModel,
)
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_tvlt import TvltImageProcessor
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 2,687 | 29.202247 | 113 | py |
transformers | transformers-main/src/transformers/models/tvlt/configuration_tvlt.py | # coding=utf-8
# Copyright 2023 MURGe-Lab and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TVLT model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
TVLT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"ZinengTang/tvlt-base": "https://huggingface.co/ZinengTang/tvlt-base/blob/main/config.json",
}
class TvltConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`TvltModel`]. It is used to instantiate a TVLT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the TVLT
[ZinengTang/tvlt-base](https://huggingface.co/ZinengTang/tvlt-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
image_size (`int`, *optional*, defaults to 224):
The size (resolution) of each image.
spectrogram_length (`int`, *optional*, defaults to 2048):
The time length of each audio spectrogram.
frequency_length (`int`, *optional*, defaults to 128):
The frequency length of audio spectrogram.
image_patch_size (`List[int]`, *optional*, defaults to `[16, 16]`):
The size (resolution) of each image patch.
audio_patch_size (`List[int]`, *optional*, defaults to `[16, 16]`):
The size (resolution) of each audio patch.
num_image_channels (`int`, *optional*, defaults to 3):
The number of input image channels.
num_audio_channels (`int`, *optional*, defaults to 1):
The number of input audio channels.
num_frames (`int`, *optional*, defaults to 8):
The maximum number of frames for an input video.
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probabilitiy for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-6):
The epsilon used by the layer normalization layers.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
use_mean_pooling (`bool`, *optional*, defaults to `False`):
Whether to mean pool the final hidden states instead of using the final hidden state of the [CLS] token.
decoder_num_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the decoder.
decoder_hidden_size (`int`, *optional*, defaults to 512):
Dimensionality of the decoder.
decoder_num_hidden_layers (`int`, *optional*, defaults to 8):
Number of hidden layers in the decoder.
decoder_intermediate_size (`int`, *optional*, defaults to 2048):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the decoder.
pixel_mask_ratio (`float`, *optional*, defaults to 0.75):
Image patch masking ratio.
audio_mask_ratio (`float`, *optional*, defaults to 0.15):
Audio patch masking ratio.
audio_mask_type (`str`, *optional*, defaults to `"frame-level"`):
Audio patch masking type, choose between "frame-level" and "patch-level".
task_matching (`bool`, *optional*, defaults to `True`):
Whether to use vision audio matching task in pretraining.
task_mae (`bool`, *optional*, defaults to `True`):
Whether to use the masked auto-encoder (MAE) in pretraining.
loss_type (`str`, *optional*, defaults to `"classification"`):
Loss types including regression and classification.
Example:
```python
>>> from transformers import TvltConfig, TvltModel
>>> # # Initializing a TVLT ZinengTang/tvlt-base style configuration
>>> configuration = TvltConfig()
>>> # # Initializing a model (with random weights) from the ZinengTang/tvlt-base style configuration
>>> model = TvltModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "tvlt"
def __init__(
self,
image_size=224,
spectrogram_length=2048,
frequency_length=128,
image_patch_size=[16, 16],
audio_patch_size=[16, 16],
num_image_channels=3,
num_audio_channels=1,
num_frames=8,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-6,
qkv_bias=True,
use_mean_pooling=False,
decoder_num_attention_heads=16,
decoder_hidden_size=512,
decoder_num_hidden_layers=8,
decoder_intermediate_size=2048,
pixel_mask_ratio=0.75,
audio_mask_ratio=0.15,
audio_mask_type="frame-level",
task_matching=True,
task_mae=True,
loss_type="classification",
**kwargs,
):
super().__init__(**kwargs)
if audio_mask_type not in ("frame-level", "patch_level"):
raise ValueError(
"audio_mask_type must be one of two acceptable strategies - {'frame_level', 'patch-level') "
f"got {audio_mask_type}"
)
self.image_size = image_size
self.spectrogram_length = spectrogram_length
self.frequency_length = frequency_length
self.image_patch_size = image_patch_size
self.audio_patch_size = audio_patch_size
self.num_image_channels = num_image_channels
self.num_audio_channels = num_audio_channels
self.num_frames = num_frames
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.qkv_bias = qkv_bias
self.use_mean_pooling = use_mean_pooling
self.decoder_num_attention_heads = decoder_num_attention_heads
self.decoder_hidden_size = decoder_hidden_size
self.decoder_num_hidden_layers = decoder_num_hidden_layers
self.decoder_intermediate_size = decoder_intermediate_size
self.pixel_mask_ratio = pixel_mask_ratio
self.audio_mask_ratio = audio_mask_ratio
self.audio_mask_type = audio_mask_type
self.task_matching = task_matching
self.task_mae = task_mae
self.loss_type = loss_type
| 8,760 | 45.601064 | 119 | py |
transformers | transformers-main/src/transformers/models/tvlt/feature_extraction_tvlt.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for TVLT."""
from math import ceil
from typing import List, Optional, Union
import numpy as np
from ...audio_utils import mel_filter_bank, spectrogram, window_function
from ...feature_extraction_sequence_utils import BatchFeature, SequenceFeatureExtractor
from ...utils import TensorType, logging
logger = logging.get_logger(__name__)
class TvltFeatureExtractor(SequenceFeatureExtractor):
r"""
Constructs a TVLT audio feature extractor. This feature extractor can be used to prepare audios for the model.
This feature extractor inherits from [`FeatureExtractionMixin`] which contains most of the main methods. Users
should refer to this superclass for more information regarding those methods.
Args:
spectrogram_length (`Dict[str, int]` *optional*, defaults to 2048):
The time length of each audio spectrogram.
num_channels (`int` *optional*, defaults to 1):
Number of audio channels.
patch_size (`List[int]` *optional*, defaults to `[16, 16]`):
The patch size of audio patch embedding.
feature_size (`int`, defaults to 128):
The frequency length of audio spectrogram.
sampling_rate (`int`, defaults to 44100):
The sampling rate at which the audio files should be digitalized expressed in Hertz (Hz).
hop_length_to_sampling_rate (`int`, defaults to 86):
Hop length is length of the overlaping windows for the STFT used to obtain the Mel Frequency coefficients.
For example, with sampling rate 44100, the hop length is 512, with 44100 / 512 = 86
n_fft (`int`, defaults to 2048):
Size of the Fourier transform.
padding_value (`float`, *optional*, defaults to 0.0):
Padding value used to pad the audio. Should correspond to silences.
"""
model_input_names = ["audio_values", "audio_mask"]
def __init__(
self,
spectrogram_length=2048,
num_channels=1,
patch_size=[16, 16],
feature_size=128,
sampling_rate=44100,
hop_length_to_sampling_rate=86,
n_fft=2048,
padding_value=0.0,
**kwargs,
):
super().__init__(
feature_size=feature_size,
sampling_rate=sampling_rate,
padding_value=padding_value,
**kwargs,
)
self.spectrogram_length = spectrogram_length
self.num_channels = num_channels
self.patch_size = patch_size
self.freq_len = feature_size // self.patch_size[1]
self.n_fft = n_fft
self.hop_length = sampling_rate // hop_length_to_sampling_rate
self.sampling_rate = sampling_rate
self.padding_value = padding_value
self.mel_filters = mel_filter_bank(
num_frequency_bins=1 + n_fft // 2,
num_mel_filters=feature_size,
min_frequency=0.0,
max_frequency=22050.0,
sampling_rate=sampling_rate,
norm="slaney",
mel_scale="slaney",
).T
def _np_extract_fbank_features(self, waveform: np.array) -> np.ndarray:
"""
Compute the log-mel spectrogram of the provided audio, gives similar results to Whisper's original torch
implementation with 1e-5 tolerance.
"""
log_spec = spectrogram(
waveform,
window_function(self.n_fft, "hann"),
frame_length=self.n_fft,
hop_length=self.hop_length,
power=2.0,
mel_filters=self.mel_filters.T,
log_mel="dB",
db_range=80.0,
)
log_spec = log_spec[:, :-1]
log_spec = log_spec - 20.0
log_spec = np.clip(log_spec / 40.0, -2.0, 0.0) + 1.0
return log_spec
def __call__(
self,
raw_speech: Union[np.ndarray, List[float], List[np.ndarray], List[List[float]]],
return_tensors: Optional[Union[str, TensorType]] = None,
return_attention_mask: Optional[bool] = True,
sampling_rate: Optional[int] = None,
resample: bool = False,
mask_audio: bool = False,
**kwargs,
) -> BatchFeature:
"""
Main method to prepare one or several audio(s) for the model.
Args:
raw_speech (`np.ndarray`, `List[float]`, `List[np.ndarray]`, `List[List[float]]`):
The sequence or batch of sequences to be padded. Each sequence can be a numpy array, a list of float
values, a list of numpy arrays or a list of list of float values. Must be mono channel audio, not
stereo, i.e. single float per timestep.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
return_attention_mask (`bool`, *optional*, default to `True`):
Whether to return the attention mask. If left to the default, will return the attention mask according
to the specific feature_extractor's default. [What are attention masks?](../glossary#attention-mask)
<Tip>
For TvltTransformer models, `attention_mask` should alwys be passed for batched inference, to avoid
subtle bugs.
</Tip>
sampling_rate (`int`, *optional*):
The sampling rate at which the `raw_speech` input was sampled. It is strongly recommended to pass
`sampling_rate` at the forward call to prevent silent errors and allow automatic speech recognition
pipeline. Current model supports sampling rate 16000 and 44100.
resample (`bool`, *optional*, defaults to `False`):
If the sampling rate is not matched, resample the input audio to match.
mask_audio (`bool`, *optional*, defaults to `False`):
Whether or not to mask input audio for MAE task.
Returns:
[`BatchFeature`]: A [`BatchFeature`] with the following fields:
- **audio_values** -- Audio values to be fed to a model, of shape (batch_size, num_channels, height,
width).
- **audio_mask** -- Audio masks to be fed to a model, of shape (batch_size, num_audio_patches).
"""
if sampling_rate is not None:
if sampling_rate != self.sampling_rate:
raise ValueError(
"This feature extractor is set to support sampling rate"
f" of {self.sampling_rate}. Please make sure that the provided `raw_speech` input was sampled"
f" with {self.sampling_rate} and not {sampling_rate}."
)
else:
logger.warning(
"It is strongly recommended to pass the `sampling_rate` argument to this function. "
"Failing to do so can result in silent errors that might be hard to debug."
)
is_batched_numpy = isinstance(raw_speech, np.ndarray) and len(raw_speech.shape) > 1
if is_batched_numpy and len(raw_speech.shape) > 2:
raise ValueError(f"Only mono-channel audio is supported for input to {self}")
is_batched = is_batched_numpy or (
isinstance(raw_speech, (list, tuple)) and (isinstance(raw_speech[0], (np.ndarray, tuple, list)))
)
if is_batched:
raw_speech = [np.asarray([speech], dtype=np.float32).T for speech in raw_speech]
elif not is_batched and not isinstance(raw_speech, np.ndarray):
raw_speech = np.asarray(raw_speech, dtype=np.float32)
elif isinstance(raw_speech, np.ndarray) and raw_speech.dtype is np.dtype(np.float64):
raw_speech = raw_speech.astype(np.float32)
# always return batch
if not is_batched:
raw_speech = [np.asarray([raw_speech]).T]
# Convert audio signals to log mel spectrograms, truncate by time axis
audio_features = [
self._np_extract_fbank_features(waveform.squeeze()).T[: self.spectrogram_length] for waveform in raw_speech
]
if isinstance(audio_features[0], List):
audio_features = [np.asarray(feature, dtype=np.float32) for feature in audio_features]
# Create audio attention mask
max_patch_len = max(
[ceil(feature.shape[0] / self.patch_size[0]) * self.freq_len for feature in audio_features]
) # The maximum number of audio patches in a batch
if return_attention_mask:
audio_mask = [
(ceil(feature.shape[0] / self.patch_size[0]) * self.freq_len) * [1]
+ (max_patch_len - ceil(feature.shape[0] / self.patch_size[0]) * self.freq_len) * [0]
for feature in audio_features
]
audio_mask = np.array(audio_mask).astype(np.float32)
# convert into correct format for padding
max_time_len = max_patch_len // self.freq_len * self.patch_size[0] # The maximum audio size in a batch
padded_audio_features = np.ones([len(audio_features), 1, max_time_len, self.feature_size]).astype(np.float32)
padded_audio_features = padded_audio_features * self.padding_value
for i in range(len(audio_features)):
feature = audio_features[i]
padded_audio_features[i, :, : feature.shape[0], :] = feature
# return as BatchFeature
if return_attention_mask:
data = {"audio_values": padded_audio_features, "audio_mask": audio_mask}
else:
data = {"audio_values": padded_audio_features}
encoded_inputs = BatchFeature(data=data, tensor_type=return_tensors)
return encoded_inputs
| 10,507 | 44.489177 | 119 | py |
transformers | transformers-main/src/transformers/models/esm/convert_esm.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert ESM checkpoint."""
import argparse
import pathlib
from pathlib import Path
from tempfile import TemporaryDirectory
import esm as esm_module
import torch
from esm.esmfold.v1.misc import batch_encode_sequences as esmfold_encode_sequences
from esm.esmfold.v1.pretrained import esmfold_v1
from transformers.models.esm.configuration_esm import EsmConfig, EsmFoldConfig
from transformers.models.esm.modeling_esm import (
EsmForMaskedLM,
EsmForSequenceClassification,
EsmIntermediate,
EsmLayer,
EsmOutput,
EsmSelfAttention,
EsmSelfOutput,
)
from transformers.models.esm.modeling_esmfold import EsmForProteinFolding
from transformers.models.esm.tokenization_esm import EsmTokenizer
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SAMPLE_DATA = [
(
"protein1",
"MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA",
),
("protein2", "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA"),
("protein3", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLAGG"),
("protein4", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLA"),
]
MODEL_MAPPING = {
"esm1b_t33_650M_UR50S": esm_module.pretrained.esm1b_t33_650M_UR50S,
"esm1v_t33_650M_UR90S_1": esm_module.pretrained.esm1v_t33_650M_UR90S_1,
"esm1v_t33_650M_UR90S_2": esm_module.pretrained.esm1v_t33_650M_UR90S_2,
"esm1v_t33_650M_UR90S_3": esm_module.pretrained.esm1v_t33_650M_UR90S_3,
"esm1v_t33_650M_UR90S_4": esm_module.pretrained.esm1v_t33_650M_UR90S_4,
"esm1v_t33_650M_UR90S_5": esm_module.pretrained.esm1v_t33_650M_UR90S_5,
"esm2_t48_15B_UR50D": esm_module.pretrained.esm2_t48_15B_UR50D,
"esm2_t36_3B_UR50D": esm_module.pretrained.esm2_t36_3B_UR50D,
"esm2_t33_650M_UR50D": esm_module.pretrained.esm2_t33_650M_UR50D,
"esm2_t30_150M_UR50D": esm_module.pretrained.esm2_t30_150M_UR50D,
"esm2_t12_35M_UR50D": esm_module.pretrained.esm2_t12_35M_UR50D,
"esm2_t6_8M_UR50D": esm_module.pretrained.esm2_t6_8M_UR50D,
"esmfold_v1": esmfold_v1,
}
restypes = list("ARNDCQEGHILKMFPSTWYV")
restypes_with_x = restypes + ["X"]
restypes_with_extras = restypes_with_x + ["<pad>", "<mask>", "<cls>", "<sep>", "<eos>"]
def get_esmfold_tokenizer():
with TemporaryDirectory() as tempdir:
vocab = "\n".join(restypes_with_extras)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokenizer.pad_token_id = 0 # Overlaps with 'A' but that seems to be what they want
return hf_tokenizer
def transfer_and_check_weights(original_module, our_module):
status = our_module.load_state_dict(original_module.state_dict())
if status.missing_keys:
raise ValueError(f"Missing keys: {status.missing_keys}")
if status.unexpected_keys:
raise ValueError(f"Unexpected keys: {status.unexpected_keys}")
def convert_esm_checkpoint_to_pytorch(
model: str, pytorch_dump_folder_path: str, classification_head: bool, push_to_repo: str, auth_token: str
):
"""
Copy/paste/tweak esm's weights to our BERT structure.
"""
if model.startswith("esmfold"):
esm = MODEL_MAPPING[model]()
else:
esm, alphabet = MODEL_MAPPING[model]()
esm.eval() # disable dropout
if model.startswith("esmfold"):
embed_dim = esm.esm.embed_dim
num_layers = esm.esm.num_layers
num_attention_heads = esm.esm.attention_heads
intermediate_size = 4 * embed_dim
token_dropout = esm.esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = True
esmfold_config = EsmFoldConfig()
for key, val in esm.cfg.items():
if hasattr(esmfold_config, key) and key != "trunk":
setattr(esmfold_config, key, val)
for key, val in esm.cfg.trunk.items():
if hasattr(esmfold_config.trunk, key) and key != "structure_module":
setattr(esmfold_config.trunk, key, val)
for key, val in esm.cfg.trunk.structure_module.items():
if hasattr(esmfold_config.trunk.structure_module, key):
setattr(esmfold_config.trunk.structure_module, key, val)
elif hasattr(esm, "args"):
# Indicates an ESM-1b or ESM-1v model
embed_dim = esm.args.embed_dim
num_layers = esm.args.layers
num_attention_heads = esm.args.attention_heads
intermediate_size = esm.args.ffn_embed_dim
token_dropout = esm.args.token_dropout
emb_layer_norm_before = True if esm.emb_layer_norm_before else False
position_embedding_type = "absolute"
is_folding_model = False
esmfold_config = None
else:
# Indicates an ESM-2 model
embed_dim = esm.embed_dim
num_layers = esm.num_layers
num_attention_heads = esm.attention_heads
intermediate_size = 4 * embed_dim # This is hardcoded in ESM-2
token_dropout = esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = False
esmfold_config = None
if is_folding_model:
alphabet = esm.esm.alphabet
vocab_list = tuple(alphabet.all_toks)
mask_token_id = alphabet.mask_idx
pad_token_id = alphabet.padding_idx
if is_folding_model:
original_esm_model = esm.esm
else:
original_esm_model = esm
config = EsmConfig(
vocab_size=original_esm_model.embed_tokens.num_embeddings,
mask_token_id=mask_token_id,
hidden_size=embed_dim,
num_hidden_layers=num_layers,
num_attention_heads=num_attention_heads,
intermediate_size=intermediate_size,
max_position_embeddings=1026,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
attention_probs_dropout_prob=0.0,
hidden_dropout_prob=0.0,
pad_token_id=pad_token_id,
emb_layer_norm_before=emb_layer_norm_before,
token_dropout=token_dropout,
position_embedding_type=position_embedding_type,
is_folding_model=is_folding_model,
esmfold_config=esmfold_config,
vocab_list=vocab_list,
)
if classification_head:
config.num_labels = esm.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our ESM config:", config)
if model.startswith("esmfold"):
model_class = EsmForProteinFolding
elif classification_head:
model_class = EsmForSequenceClassification
else:
model_class = EsmForMaskedLM
model = model_class(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.esm.embeddings.word_embeddings.weight = original_esm_model.embed_tokens.weight
if position_embedding_type == "absolute":
model.esm.embeddings.position_embeddings.weight = original_esm_model.embed_positions.weight
if config.emb_layer_norm_before:
model.esm.embeddings.layer_norm.weight = original_esm_model.emb_layer_norm_before.weight
model.esm.embeddings.layer_norm.bias = original_esm_model.emb_layer_norm_before.bias
model.esm.encoder.emb_layer_norm_after.weight = original_esm_model.emb_layer_norm_after.weight
model.esm.encoder.emb_layer_norm_after.bias = original_esm_model.emb_layer_norm_after.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer: EsmLayer = model.esm.encoder.layer[i]
# esm_layer: TransformerSentenceEncoderLayer = original_esm_model.layers[i]
esm_layer = original_esm_model.layers[i]
# self attention
self_attn: EsmSelfAttention = layer.attention.self
assert (
esm_layer.self_attn.k_proj.weight.data.shape
== esm_layer.self_attn.q_proj.weight.data.shape
== esm_layer.self_attn.v_proj.weight.data.shape
== torch.Size((config.hidden_size, config.hidden_size))
)
self_attn.query.weight.data = esm_layer.self_attn.q_proj.weight
self_attn.query.bias.data = esm_layer.self_attn.q_proj.bias
self_attn.key.weight.data = esm_layer.self_attn.k_proj.weight
self_attn.key.bias.data = esm_layer.self_attn.k_proj.bias
self_attn.value.weight.data = esm_layer.self_attn.v_proj.weight
self_attn.value.bias.data = esm_layer.self_attn.v_proj.bias
if getattr(esm_layer.self_attn, "rot_emb", None) is not None:
# Matt: Although inv_freq is not a trainable weight, it is computed at model init and cached.
# During the training of ESM-2 the model was converted to float16 precision, which also converts
# the inv_freq tensor, and the loss of precision remains even if the model is loaded later as float32.
# If we recompute inv_freq without this loss of precision then we will get subtly different rotary
# embeddings, which are enough to cause significant discrepancies in model outputs. To avoid this,
# we make sure the new model copies the data from the old inv_freq.
self_attn.rotary_embeddings.inv_freq.data = esm_layer.self_attn.rot_emb.inv_freq
# LayerNorm changes for pre-activation
layer.attention.LayerNorm.weight = esm_layer.self_attn_layer_norm.weight
layer.attention.LayerNorm.bias = esm_layer.self_attn_layer_norm.bias
layer.LayerNorm.weight = esm_layer.final_layer_norm.weight
layer.LayerNorm.bias = esm_layer.final_layer_norm.bias
# self-attention output
self_output: EsmSelfOutput = layer.attention.output
assert self_output.dense.weight.shape == esm_layer.self_attn.out_proj.weight.shape
self_output.dense.weight = esm_layer.self_attn.out_proj.weight
self_output.dense.bias = esm_layer.self_attn.out_proj.bias
# intermediate
intermediate: EsmIntermediate = layer.intermediate
assert intermediate.dense.weight.shape == esm_layer.fc1.weight.shape
intermediate.dense.weight = esm_layer.fc1.weight
intermediate.dense.bias = esm_layer.fc1.bias
# output
bert_output: EsmOutput = layer.output
assert bert_output.dense.weight.shape == esm_layer.fc2.weight.shape
bert_output.dense.weight = esm_layer.fc2.weight
bert_output.dense.bias = esm_layer.fc2.bias
# end of layer
if is_folding_model:
model.esm_s_combine.data = esm.esm_s_combine.data
model.af2_to_esm.data = esm.af2_to_esm.data
transfer_and_check_weights(esm.embedding, model.embedding)
transfer_and_check_weights(esm.esm_s_mlp, model.esm_s_mlp)
transfer_and_check_weights(esm.trunk, model.trunk)
transfer_and_check_weights(esm.distogram_head, model.distogram_head)
transfer_and_check_weights(esm.ptm_head, model.ptm_head)
transfer_and_check_weights(esm.lm_head, model.lm_head)
transfer_and_check_weights(esm.lddt_head, model.lddt_head)
elif classification_head:
model.classifier.dense.weight = esm.esm.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = esm.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = esm.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = esm.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = esm.lm_head.dense.weight
model.lm_head.dense.bias = esm.lm_head.dense.bias
model.lm_head.layer_norm.weight = esm.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = esm.lm_head.layer_norm.bias
model.lm_head.decoder.weight = esm.lm_head.weight
model.lm_head.bias = esm.lm_head.bias
# Contact prediction head
transfer_and_check_weights(esm.contact_head, model.esm.contact_head)
# Prepare data (first 2 sequences from ESMStructuralSplitDataset superfamily / 4)
if is_folding_model:
# Folding models aren't trained on masked inputs and don't like mask tokens.
sample_data = SAMPLE_DATA[:2]
else:
sample_data = SAMPLE_DATA
if is_folding_model:
hf_tokenizer = get_esmfold_tokenizer()
hf_tokens = hf_tokenizer(
[row[1] for row in sample_data], return_tensors="pt", padding=True, add_special_tokens=False
)
esmfold_aas, esmfold_mask, _, _, _ = esmfold_encode_sequences([row[1] for row in sample_data])
success = torch.all(hf_tokens["input_ids"] == esmfold_aas) and torch.all(
hf_tokens["attention_mask"] == esmfold_mask
)
else:
# Let's check that we get the same results.
batch_converter = alphabet.get_batch_converter()
batch_labels, batch_strs, batch_tokens = batch_converter(sample_data)
# Prepare tokenizer and make sure it matches
with TemporaryDirectory() as tempdir:
vocab = "\n".join(alphabet.all_toks)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokens = hf_tokenizer([row[1] for row in sample_data], return_tensors="pt", padding=True)
success = torch.all(hf_tokens["input_ids"] == batch_tokens)
print("Do both models tokenizers output the same tokens?", "🔥" if success else "💩")
if not success:
raise Exception("Tokenization does not match!")
with torch.no_grad():
if is_folding_model:
# Let's test the model in parts
# ESMFold always converts the ESM stem to float16, which requires float16 ops
# that don't exist on CPU. Therefore, to test it we need to run it on GPU. However,
# ESMFold is what we in the community call a "big boy" and so we desperately avoid putting both the
# original and the converted model on the GPU at the same time.
their_output = esm.cuda().infer([row[1] for row in sample_data])
our_output = model.cuda()(
input_ids=hf_tokens["input_ids"].cuda(), attention_mask=hf_tokens["attention_mask"].cuda()
)
else:
our_output = model(**hf_tokens, output_hidden_states=True)
our_output = our_output["logits"]
if classification_head:
their_output = esm.model.classification_heads["mnli"](esm.extract_features(batch_tokens))
else:
their_output = esm(hf_tokens["input_ids"], repr_layers=list(range(999)))
their_output = their_output["logits"]
if is_folding_model:
max_absolute_diff = torch.max(torch.abs(our_output["positions"] - their_output["positions"])).item()
success = torch.allclose(our_output["positions"], their_output["positions"], atol=1e-5)
else:
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
if not is_folding_model:
# Let's check contact prediction too
our_output = model.predict_contacts(hf_tokens["input_ids"], hf_tokens["attention_mask"])
their_output = esm.predict_contacts(hf_tokens["input_ids"])
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print("Contact prediction testing:")
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
pathlib.Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
del esm # Free up some memory before continuing
print(f"Saving tokenizer to {pytorch_dump_folder_path}")
hf_tokenizer.save_pretrained(pytorch_dump_folder_path)
if push_to_repo:
model.push_to_hub(repo_id=push_to_repo, use_auth_token=auth_token)
hf_tokenizer.push_to_hub(repo_id=push_to_repo, use_auth_token=auth_token)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--pytorch_dump_folder_path", type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--classification_head", action="store_true", help="Whether to convert a final classification head."
)
parser.add_argument("--model", default=None, type=str, required=True, help="Name of model to convert.")
parser.add_argument("--push_to_repo", type=str, help="Repo to upload to (including username!).")
parser.add_argument("--auth_token", type=str, help="HuggingFace auth token.")
args = parser.parse_args()
convert_esm_checkpoint_to_pytorch(
args.model, args.pytorch_dump_folder_path, args.classification_head, args.push_to_repo, args.auth_token
)
| 18,458 | 45.032419 | 359 | py |
transformers | transformers-main/src/transformers/models/esm/modeling_esmfold.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esmfold_v1"
_CONFIG_FOR_DOC = "EsmConfig"
@dataclass
class EsmForProteinFoldingOutput(ModelOutput):
"""
Output type of [`EsmForProteinFoldingOutput`].
Args:
frames (`torch.FloatTensor`):
Output frames.
sidechain_frames (`torch.FloatTensor`):
Output sidechain frames.
unnormalized_angles (`torch.FloatTensor`):
Predicted unnormalized backbone and side chain torsion angles.
angles (`torch.FloatTensor`):
Predicted backbone and side chain torsion angles.
positions (`torch.FloatTensor`):
Predicted positions of the backbone and side chain atoms.
states (`torch.FloatTensor`):
Hidden states from the protein folding trunk.
s_s (`torch.FloatTensor`):
Per-residue embeddings derived by concatenating the hidden states of each layer of the ESM-2 LM stem.
s_z (`torch.FloatTensor`):
Pairwise residue embeddings.
distogram_logits (`torch.FloatTensor`):
Input logits to the distogram used to compute residue distances.
lm_logits (`torch.FloatTensor`):
Logits output by the ESM-2 protein language model stem.
aatype (`torch.FloatTensor`):
Input amino acids (AlphaFold2 indices).
atom14_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom14 representation.
residx_atom14_to_atom37 (`torch.FloatTensor`):
Mapping between atoms in the atom14 and atom37 representations.
residx_atom37_to_atom14 (`torch.FloatTensor`):
Mapping between atoms in the atom37 and atom14 representations.
atom37_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom37 representation.
residue_index (`torch.FloatTensor`):
The index of each residue in the protein chain. Unless internal padding tokens are used, this will just be
a sequence of integers from 0 to `sequence_length`.
lddt_head (`torch.FloatTensor`):
Raw outputs from the lddt head used to compute plddt.
plddt (`torch.FloatTensor`):
Per-residue confidence scores. Regions of low confidence may indicate areas where the model's prediction is
uncertain, or where the protein structure is disordered.
ptm_logits (`torch.FloatTensor`):
Raw logits used for computing ptm.
ptm (`torch.FloatTensor`):
TM-score output representing the model's high-level confidence in the overall structure.
aligned_confidence_probs (`torch.FloatTensor`):
Per-residue confidence scores for the aligned structure.
predicted_aligned_error (`torch.FloatTensor`):
Predicted error between the model's prediction and the ground truth.
max_predicted_aligned_error (`torch.FloatTensor`):
Per-sample maximum predicted error.
"""
frames: torch.FloatTensor = None
sidechain_frames: torch.FloatTensor = None
unnormalized_angles: torch.FloatTensor = None
angles: torch.FloatTensor = None
positions: torch.FloatTensor = None
states: torch.FloatTensor = None
s_s: torch.FloatTensor = None
s_z: torch.FloatTensor = None
distogram_logits: torch.FloatTensor = None
lm_logits: torch.FloatTensor = None
aatype: torch.FloatTensor = None
atom14_atom_exists: torch.FloatTensor = None
residx_atom14_to_atom37: torch.FloatTensor = None
residx_atom37_to_atom14: torch.FloatTensor = None
atom37_atom_exists: torch.FloatTensor = None
residue_index: torch.FloatTensor = None
lddt_head: torch.FloatTensor = None
plddt: torch.FloatTensor = None
ptm_logits: torch.FloatTensor = None
ptm: torch.FloatTensor = None
aligned_confidence_probs: torch.FloatTensor = None
predicted_aligned_error: torch.FloatTensor = None
max_predicted_aligned_error: torch.FloatTensor = None
ESMFOLD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
masking_pattern (`torch.LongTensor` of shape `({0})`, *optional*):
Locations of tokens to mask during training as a form of regularization. Mask values selected in `[0, 1]`.
num_recycles (`int`, *optional*, defaults to `None`):
Number of times to recycle the input sequence. If `None`, defaults to `config.num_recycles`. "Recycling"
consists of passing the output of the folding trunk back in as input to the trunk. During training, the
number of recycles should vary with each batch, to ensure that the model learns to output valid predictions
after each recycle. During inference, num_recycles should be set to the highest value that the model was
trained with for maximum accuracy. Accordingly, when this value is set to `None`, config.max_recycles is
used.
"""
def is_fp16_enabled():
# Autocast world
fp16_enabled = torch.get_autocast_gpu_dtype() == torch.float16
fp16_enabled = fp16_enabled and torch.is_autocast_enabled()
return fp16_enabled
def is_deepspeed_initialized():
if is_deepspeed_available():
return False
else:
try:
import deepspeed
# This is not available in all DeepSpeed versions.
return deepspeed.utils.is_initialized()
except Exception:
return False
def collate_dense_tensors(samples: List[torch.Tensor], pad_v: float = 0) -> torch.Tensor:
"""
Takes a list of tensors with the following dimensions:
[(d_11, ..., d_1K),
(d_21, ..., d_2K), ..., (d_N1, ..., d_NK)]
and stack + pads them into a single tensor of:
(N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK})
"""
if len(samples) == 0:
return torch.Tensor()
if len({x.dim() for x in samples}) != 1:
raise RuntimeError(f"Samples has varying dimensions: {[x.dim() for x in samples]}")
(device,) = tuple({x.device for x in samples}) # assumes all on same device
max_shape = [max(lst) for lst in zip(*[x.shape for x in samples])]
result = torch.empty(len(samples), *max_shape, dtype=samples[0].dtype, device=device)
result.fill_(pad_v)
for i in range(len(samples)):
result_i = result[i]
t = samples[i]
result_i[tuple(slice(0, k) for k in t.shape)] = t
return result
def flatten_final_dims(t: torch.Tensor, no_dims: int):
return t.reshape(t.shape[:-no_dims] + (-1,))
def permute_final_dims(tensor: torch.Tensor, inds: List[int]):
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def dict_multimap(fn, dicts):
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if type(v) is dict:
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def trunc_normal_init_(weights, scale=1.0, fan="fan_in"):
shape = weights.shape
scale = scale / max(1, shape[1])
if not is_scipy_available():
logger.warning(
"This init requires scipy, but scipy was not found, default to an approximation that might not be"
" equivalent."
)
std = math.sqrt(scale)
torch.nn.init.normal_(weights, std=std).clamp(min=0.0, max=2.0 * std)
else:
from scipy.stats import truncnorm
std = math.sqrt(scale) / truncnorm.std(a=-2, b=2, loc=0, scale=1)
samples = truncnorm.rvs(a=-2, b=2, loc=0, scale=std, size=weights.numel())
samples = np.reshape(samples, shape)
weights.copy_(torch.tensor(samples, device=weights.device))
def ipa_point_weights_init_(weights):
with torch.no_grad():
softplus_inverse_1 = 0.541324854612918
weights.fill_(softplus_inverse_1)
class EsmFoldLinear(nn.Linear):
"""
A Linear layer with built-in nonstandard initializations. Called just like torch.nn.Linear.
Implements the initializers in 1.11.4, plus some additional ones found in the code.
"""
def __init__(
self,
in_dim: int,
out_dim: int,
bias: bool = True,
init: str = "default",
init_fn: Optional[Callable[[torch.Tensor, torch.Tensor], None]] = None,
):
"""
Args:
in_dim:
The final dimension of inputs to the layer
out_dim:
The final dimension of layer outputs
bias:
Whether to learn an additive bias. True by default
init:
The initializer to use. Choose from:
"default": LeCun fan-in truncated normal initialization "relu": He initialization w/ truncated normal
distribution "glorot": Fan-average Glorot uniform initialization "gating": Weights=0, Bias=1 "normal":
Normal initialization with std=1/sqrt(fan_in) "final": Weights=0, Bias=0
Overridden by init_fn if the latter is not None.
init_fn:
A custom initializer taking weight and bias as inputs. Overrides init if not None.
"""
super().__init__(in_dim, out_dim, bias=bias)
if bias:
with torch.no_grad():
self.bias.fill_(0)
self.init = init
self.init_fn = init_fn
if init not in ["default", "relu", "glorot", "gating", "normal", "final"]:
raise ValueError("Invalid init string.")
class EsmFoldLayerNorm(nn.Module):
def __init__(self, c_in, eps=1e-5):
super().__init__()
self.c_in = (c_in,)
self.eps = eps
self.weight = nn.Parameter(torch.ones(c_in))
self.bias = nn.Parameter(torch.zeros(c_in))
def forward(self, x):
d = x.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
out = nn.functional.layer_norm(x, self.c_in, self.weight.to(dtype=d), self.bias.to(dtype=d), self.eps)
else:
out = nn.functional.layer_norm(x, self.c_in, self.weight, self.bias, self.eps)
return out
@torch.jit.ignore
def softmax_no_cast(t: torch.Tensor, dim: int = -1) -> torch.Tensor:
"""
Softmax, but without automatic casting to fp32 when the input is of type bfloat16
"""
d = t.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
s = torch.nn.functional.softmax(t, dim=dim)
else:
s = torch.nn.functional.softmax(t, dim=dim)
return s
class EsmFoldAttention(nn.Module):
"""
Standard multi-head attention using AlphaFold's default layer initialization. Allows multiple bias vectors.
"""
def __init__(
self,
c_q: int,
c_k: int,
c_v: int,
c_hidden: int,
no_heads: int,
gating: bool = True,
):
"""
Args:
c_q:
Input dimension of query data
c_k:
Input dimension of key data
c_v:
Input dimension of value data
c_hidden:
Per-head hidden dimension
no_heads:
Number of attention heads
gating:
Whether the output should be gated using query data
"""
super().__init__()
self.c_q = c_q
self.c_k = c_k
self.c_v = c_v
self.c_hidden = c_hidden
self.no_heads = no_heads
self.gating = gating
# DISCREPANCY: c_hidden is not the per-head channel dimension, as
# stated in the supplement, but the overall channel dimension.
self.linear_q = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_k = EsmFoldLinear(self.c_k, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_v = EsmFoldLinear(self.c_v, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_o = EsmFoldLinear(self.c_hidden * self.no_heads, self.c_q, init="final")
self.linear_g = None
if self.gating:
self.linear_g = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, init="gating")
self.sigmoid = nn.Sigmoid()
def _prep_qkv(self, q_x: torch.Tensor, kv_x: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
# [*, Q/K/V, H * C_hidden]
q = self.linear_q(q_x)
k = self.linear_k(kv_x)
v = self.linear_v(kv_x)
# [*, Q/K, H, C_hidden]
q = q.view(q.shape[:-1] + (self.no_heads, -1))
k = k.view(k.shape[:-1] + (self.no_heads, -1))
v = v.view(v.shape[:-1] + (self.no_heads, -1))
# [*, H, Q/K, C_hidden]
q = q.transpose(-2, -3)
k = k.transpose(-2, -3)
v = v.transpose(-2, -3)
q /= math.sqrt(self.c_hidden)
return q, k, v
def _wrap_up(self, o: torch.Tensor, q_x: torch.Tensor) -> torch.Tensor:
if self.linear_g is not None:
g = self.sigmoid(self.linear_g(q_x))
# [*, Q, H, C_hidden]
g = g.view(g.shape[:-1] + (self.no_heads, -1))
o = o * g
# [*, Q, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, Q, C_q]
o = self.linear_o(o)
return o
def forward(
self,
q_x: torch.Tensor,
kv_x: torch.Tensor,
biases: Optional[List[torch.Tensor]] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
lma_q_chunk_size: int = 1024,
lma_kv_chunk_size: int = 4096,
use_flash: bool = False,
flash_mask: Optional[torch.Tensor] = None,
) -> torch.Tensor:
"""
Args:
q_x:
[*, Q, C_q] query data
kv_x:
[*, K, C_k] key data
biases:
List of biases that broadcast to [*, H, Q, K]
use_memory_efficient_kernel:
Whether to use a custom memory-efficient attention kernel. This should be the default choice for most.
If none of the "use_<...>" flags are True, a stock PyTorch implementation is used instead
use_lma:
Whether to use low-memory attention (Staats & Rabe 2021). If none of the "use_<...>" flags are True, a
stock PyTorch implementation is used instead
lma_q_chunk_size:
Query chunk size (for LMA)
lma_kv_chunk_size:
Key/Value chunk size (for LMA)
Returns
[*, Q, C_q] attention update
"""
if use_lma and (lma_q_chunk_size is None or lma_kv_chunk_size is None):
raise ValueError("If use_lma is specified, lma_q_chunk_size and lma_kv_chunk_size must be provided")
if use_flash and biases is not None:
raise ValueError("use_flash is incompatible with the bias option. For masking, use flash_mask instead")
attn_options = [use_memory_efficient_kernel, use_lma, use_flash]
if sum(attn_options) > 1:
raise ValueError("Choose at most one alternative attention algorithm")
if biases is None:
biases = []
# [*, H, Q/K, C_hidden]
query, key, value = self._prep_qkv(q_x, kv_x)
key = permute_final_dims(key, (1, 0))
# [*, H, Q, K]
output = torch.matmul(query, key)
for b in biases:
output += b
output = softmax_no_cast(output, -1)
# [*, H, Q, C_hidden]
output = torch.matmul(output, value)
output = output.transpose(-2, -3)
output = self._wrap_up(output, q_x)
return output
class EsmFoldTriangleAttention(nn.Module):
def __init__(self, c_in, c_hidden, no_heads, starting=True, inf=1e9):
"""
Args:
c_in:
Input channel dimension
c_hidden:
Overall hidden channel dimension (not per-head)
no_heads:
Number of attention heads
"""
super().__init__()
self.c_in = c_in
self.c_hidden = c_hidden
self.no_heads = no_heads
self.starting = starting
self.inf = inf
self.layer_norm = LayerNorm(self.c_in)
self.linear = EsmFoldLinear(c_in, self.no_heads, bias=False, init="normal")
self.mha = EsmFoldAttention(self.c_in, self.c_in, self.c_in, self.c_hidden, self.no_heads)
@torch.jit.ignore
def _chunk(
self,
x: torch.Tensor,
biases: List[torch.Tensor],
chunk_size: int,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"triangle! triangle!"
mha_inputs = {
"q_x": x,
"kv_x": x,
"biases": biases,
}
return chunk_layer(
partial(self.mha, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma),
mha_inputs,
chunk_size=chunk_size,
no_batch_dims=len(x.shape[:-2]),
_out=x if inplace_safe else None,
)
def forward(
self,
x: torch.Tensor,
mask: Optional[torch.Tensor] = None,
chunk_size: Optional[int] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"""
Args:
x:
[*, I, J, C_in] input tensor (e.g. the pair representation)
Returns:
[*, I, J, C_in] output tensor
"""
if mask is None:
# [*, I, J]
mask = x.new_ones(
x.shape[:-1],
)
if not self.starting:
x = x.transpose(-2, -3)
mask = mask.transpose(-1, -2)
# [*, I, J, C_in]
x = self.layer_norm(x)
# [*, I, 1, 1, J]
mask_bias = (self.inf * (mask - 1))[..., :, None, None, :]
# [*, H, I, J]
triangle_bias = permute_final_dims(self.linear(x), (2, 0, 1))
# [*, 1, H, I, J]
triangle_bias = triangle_bias.unsqueeze(-4)
biases = [mask_bias, triangle_bias]
if chunk_size is not None:
x = self._chunk(
x,
biases,
chunk_size,
use_memory_efficient_kernel=use_memory_efficient_kernel,
use_lma=use_lma,
inplace_safe=inplace_safe,
)
else:
x = self.mha(
q_x=x, kv_x=x, biases=biases, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma
)
if not self.starting:
x = x.transpose(-2, -3)
return x
class EsmFoldTriangleMultiplicativeUpdate(nn.Module):
"""
Implements Algorithms 11 and 12.
"""
def __init__(self, config, _outgoing=True):
super().__init__()
c_hidden = config.pairwise_state_dim
self._outgoing = _outgoing
self.linear_a_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_a_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_b_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_b_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_z = EsmFoldLinear(c_hidden, c_hidden, init="final")
self.layer_norm_in = LayerNorm(c_hidden)
self.layer_norm_out = LayerNorm(c_hidden)
self.sigmoid = nn.Sigmoid()
def _combine_projections(
self, a: torch.Tensor, b: torch.Tensor, _inplace_chunk_size: Optional[int] = None
) -> torch.Tensor:
if self._outgoing:
a = permute_final_dims(a, (2, 0, 1))
b = permute_final_dims(b, (2, 1, 0))
else:
a = permute_final_dims(a, (2, 1, 0))
b = permute_final_dims(b, (2, 0, 1))
if _inplace_chunk_size is not None:
# To be replaced by torch vmap
for i in range(0, a.shape[-3], _inplace_chunk_size):
a_chunk = a[..., i : i + _inplace_chunk_size, :, :]
b_chunk = b[..., i : i + _inplace_chunk_size, :, :]
a[..., i : i + _inplace_chunk_size, :, :] = torch.matmul(
a_chunk,
b_chunk,
)
p = a
else:
p = torch.matmul(a, b)
return permute_final_dims(p, (1, 2, 0))
def _inference_forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_chunk_size: Optional[int] = None,
with_add: bool = True,
):
"""
Args:
z:
A [*, N, N, C_z] pair representation
mask:
A [*, N, N] pair mask
inplace_chunk_size:
Size of chunks used in the main computation. Increase to trade memory for speed.
with_add:
If True, z is overwritten with (z + update). Otherwise, it is overwritten with (update).
Returns:
A reference to the overwritten z
More memory-efficient, inference-only version of the forward function. Uses in-place operations, fusion of the
addition that happens after this module in the Evoformer, a smidge of recomputation, and a cache of overwritten
values to lower peak memory consumption of this module from 5x the size of the input tensor z to 2.5x its size.
Useful for inference on extremely long sequences.
It works as follows. We will make reference to variables used in the default forward implementation below.
Naively, triangle multiplication attention requires the manifestation of 5 tensors the size of z: 1) z, the
"square" input tensor, 2) a, the first projection of z, 3) b, the second projection of b, 4) g, a z-sized mask,
and 5) a z-sized tensor for intermediate computations. For large N, this is prohibitively expensive; for
N=4000, for example, z is more than 8GB alone. To avoid this problem, we compute b, g, and all intermediate
tensors in small chunks, noting that the chunks required to compute a chunk of the output depend only on the
tensor a and corresponding vertical and horizontal chunks of z. This suggests an algorithm that loops over
pairs of chunks of z: hereafter "columns" and "rows" of z, even though each "column" and "row" in fact contains
inplace_chunk_size contiguous true columns and rows of z. Writing output chunks to a new tensor would bring
total memory consumption down to 3x the size of z. However, more memory can be saved by writing output chunks
directly to z in-place. WLOG, we choose to write output chunks vertically, overwriting the ith "column" of z at
the end of the ith iteration of the main loop. Despite this overwriting, the ith column is always one column
ahead of previously overwritten columns and can be recovered directly from z. After the first iteration,
however, the ith row of z is always at least partially overwritten. For this reason, we introduce the z-cache,
a tensor one-half the size of z. The z-cache initially contains the left half (2nd and 3rd quadrants) of z. For
0 < i < N/2, the missing left part of the ith row of z is recovered from this cache at the beginning of the ith
iteration. Once i exceeds n/2, the cache is "reoriented" to encompass the 3rd and 4th quadrants of z instead.
Though the 3rd quadrant of the original z is entirely overwritten at this point, it can be recovered from the
z-cache itself. Thereafter, the ith row of z can be recovered in its entirety from the reoriented z-cache.
After the final iteration, z has been completely overwritten and contains the triangular multiplicative update.
If with_add is True, it instead contains the sum of z and the triangular multiplicative update. In either case,
peak memory consumption is just 2.5x the size of z, disregarding memory used for chunks and other small
variables.
"""
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
def compute_projection_helper(pair, mask, a=True):
if a:
linear_g = self.linear_a_g
linear_p = self.linear_a_p
else:
linear_g = self.linear_b_g
linear_p = self.linear_b_p
pair = self.layer_norm_in(pair)
p = linear_g(pair)
p.sigmoid_()
p *= linear_p(pair)
p *= mask
p = permute_final_dims(p, (2, 0, 1))
return p
def compute_projection(pair, mask, a=True, chunked=True):
need_transpose = self._outgoing ^ a
if not chunked:
p = compute_projection_helper(pair, mask, a)
if need_transpose:
p = p.transpose(-1, -2)
else:
# This computation is chunked so as not to exceed our 2.5x
# budget with a large intermediate tensor
linear_g = self.linear_a_g if a else self.linear_b_g
c = linear_g.bias.shape[-1]
out_shape = pair.shape[:-3] + (c,) + pair.shape[-3:-1]
p = pair.new_zeros(out_shape)
for i in range(0, pair.shape[-3], inplace_chunk_size):
pair_chunk = pair[..., i : i + inplace_chunk_size, :, :]
pair_chunk = compute_projection_helper(
pair[..., i : i + inplace_chunk_size, :, :],
mask[..., i : i + inplace_chunk_size, :, :],
a,
)
if need_transpose:
pair_chunk = pair_chunk.transpose(-1, -2)
p[..., i : i + inplace_chunk_size] = pair_chunk
else:
p[..., i : i + inplace_chunk_size, :] = pair_chunk
del pair_chunk
return p
# We start by fully manifesting a. In addition to the input, this
# brings total memory consumption to 2x z (disregarding size of chunks)
# [*, N, N, c]
a = compute_projection(z, mask, True, chunked=True)
if inplace_chunk_size is not None:
n = a.shape[-1]
half_n = n // 2 + n % 2
row_dim = -3
col_dim = -2
b_chunk_dim = row_dim if self._outgoing else col_dim
def empty_slicer(t):
return [slice(None) for _ in t.shape]
def slice_tensor(t, start, end, dim):
# Slices start:end from the dim dimension of t
s = empty_slicer(t)
s[dim] = slice(start, end)
return t[s]
def flip_z_cache_(z_cache, z):
# "Reorient" the z_cache (see below), filling it with quadrants
# 3---recovered from the z_cache---and 4---recovered from z---
# of the input tensor z.
quadrant_3 = slice_tensor(z_cache, half_n, None, row_dim)
z_cache = z_cache.transpose(row_dim, col_dim)
# If n is odd, we need to shrink the z_cache by one row
z_cache = z_cache[..., : (n // 2), :, :]
# Move the 3rd quadrant of z into the
first_half_slicer = empty_slicer(z_cache)
first_half_slicer[col_dim] = slice(0, half_n)
z_cache[first_half_slicer] = quadrant_3
# Get the fourth quadrant of z
quadrant_4 = slice_tensor(z, half_n, None, row_dim)
quadrant_4 = slice_tensor(quadrant_4, half_n, None, col_dim)
# Insert said quadrant into the rotated z-cache
quadrant_3_slicer = empty_slicer(z_cache)
quadrant_3_slicer[col_dim] = slice(half_n, None)
z_cache[quadrant_3_slicer] = quadrant_4
return z_cache
# Initialize the z cache to the left half of z.
z_cache_shape = list(z.shape)
z_cache_shape[col_dim] = half_n
z_cache = z.new_zeros(z_cache_shape)
z_cache_slicer = empty_slicer(z_cache)
z_cache_slicer[col_dim] = slice(0, half_n)
z_cache.copy_(z[z_cache_slicer])
z_cache_rotated = False
# We need to reorient the z-cache at the halfway point, and we
# don't want a single chunk to straddle that point. We contract one
# of the chunks in the middle to address that problem.
i_range = list(range(0, half_n, inplace_chunk_size))
initial_offsets = [i_2 - i_1 for i_1, i_2 in zip(i_range, i_range[1:] + [half_n])]
after_half = list(range(half_n, n, inplace_chunk_size))
after_half_offsets = [inplace_chunk_size for _ in after_half]
combined_range_with_offsets = zip(i_range + after_half, initial_offsets + after_half_offsets)
for i, offset in combined_range_with_offsets:
if not z_cache_rotated and i >= half_n:
z_cache = flip_z_cache_(z_cache, z)
z_cache_rotated = True
z_chunk_b = slice_tensor(z, i, i + offset, b_chunk_dim)
mask_chunk = slice_tensor(mask, i, i + offset, b_chunk_dim)
z_chunk_b = z_chunk_b.clone()
if b_chunk_dim == col_dim:
z_chunk_b = slice_tensor(z, i, i + offset, col_dim)
else: # b_chunk_dim == row_dim
# In this case, the b-dimension (b_chunk_dim) is partially
# overwritten at the end of each iteration. We need to
# restore the missing component from the z-cache.
if not z_cache_rotated:
z_chunk_slicer = empty_slicer(z_chunk_b)
z_chunk_slicer[col_dim] = slice(0, half_n)
z_chunk_b[z_chunk_slicer] = slice_tensor(z_cache, i, i + offset, row_dim)
else:
z_cache_offset = i - half_n
z_chunk_b = slice_tensor(z_cache, z_cache_offset, z_cache_offset + offset, row_dim)
b_chunk = compute_projection(z_chunk_b, mask_chunk, a=False, chunked=False)
del z_chunk_b
x_chunk = torch.matmul(a, b_chunk)
x_chunk = permute_final_dims(x_chunk, (1, 2, 0))
x_chunk = self.layer_norm_out(x_chunk)
x_chunk = self.linear_z(x_chunk)
# The g dimension (col_dim) is parallel to and ahead of the
# overwrites in z. We can extract the g chunk normally.
z_chunk_g = slice_tensor(z, i, i + offset, col_dim)
g_chunk = self.linear_g(self.layer_norm_in(z_chunk_g))
g_chunk.sigmoid_()
del z_chunk_g
x_chunk *= g_chunk
# Write the columns into z in-place
z_slicer = empty_slicer(z)
z_slicer[col_dim] = slice(i, i + offset)
if with_add:
z[z_slicer] += x_chunk
else:
z[z_slicer] = x_chunk
else:
b = compute_projection(z, mask, False, False)
x = torch.matmul(a, b)
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.linear_g(z)
g.sigmoid_()
x *= g
if with_add:
z += x
else:
z = x
return z
def forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_safe: bool = False,
_add_with_inplace: bool = False,
_inplace_chunk_size: Optional[int] = 256,
) -> torch.Tensor:
"""
Args:
x:
[*, N_res, N_res, C_z] input tensor
mask:
[*, N_res, N_res] input mask
Returns:
[*, N_res, N_res, C_z] output tensor
"""
if inplace_safe:
x = self._inference_forward(
z,
mask,
inplace_chunk_size=_inplace_chunk_size,
with_add=_add_with_inplace,
)
return x
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
z = self.layer_norm_in(z)
a = mask
a = a * self.sigmoid(self.linear_a_g(z))
a = a * self.linear_a_p(z)
b = mask
b = b * self.sigmoid(self.linear_b_g(z))
b = b * self.linear_b_p(z)
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
x = self._combine_projections(a.float(), b.float())
else:
x = self._combine_projections(a, b)
del a, b
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.sigmoid(self.linear_g(z))
x = x * g
return x
class EsmFoldPreTrainedModel(EsmPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
# Subclass `EsMPreTrainedModel` to deal with special init
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, EsmFoldLinear):
with torch.no_grad():
if module.init_fn is not None:
module.init_fn(module.weight, module.bias)
elif module.init == "default":
trunc_normal_init_(module.weight, scale=1.0)
elif module.init == "relu":
trunc_normal_init_(module.weight, scale=2.0)
elif module.init == "glorot":
nn.init.xavier_uniform_(module.weight, gain=1)
elif module.init == "gating":
module.weight.fill_(0.0)
if module.bias:
module.bias.fill_(1.0)
elif module.init == "normal":
torch.nn.init.kaiming_normal_(module.weight, nonlinearity="linear")
elif module.init == "final":
module.weight.fill_(0.0)
elif isinstance(module, EsmFoldInvariantPointAttention):
ipa_point_weights_init_(module.head_weights)
elif isinstance(module, EsmFoldTriangularSelfAttentionBlock):
torch.nn.init.zeros_(module.tri_mul_in.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_in.linear_z.bias)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.bias)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.bias)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.bias)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.weight)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.bias)
torch.nn.init.zeros_(module.pair_to_sequence.linear.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.bias)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].bias)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].bias)
else:
super()._init_weights(module)
class EsmFoldSelfAttention(nn.Module):
def __init__(self, embed_dim, num_heads, head_width, gated=False):
super().__init__()
assert embed_dim == num_heads * head_width
self.embed_dim = embed_dim
self.num_heads = num_heads
self.head_width = head_width
self.proj = nn.Linear(embed_dim, embed_dim * 3, bias=False)
self.o_proj = nn.Linear(embed_dim, embed_dim, bias=True)
self.gated = gated
if gated:
self.g_proj = nn.Linear(embed_dim, embed_dim)
torch.nn.init.zeros_(self.g_proj.weight)
torch.nn.init.ones_(self.g_proj.bias)
self.rescale_factor = self.head_width**-0.5
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, x, mask=None, bias=None, indices=None):
"""
Basic self attention with optional mask and external pairwise bias. To handle sequences of different lengths,
use mask.
Inputs:
x: batch of input sequneces (.. x L x C) mask: batch of boolean masks where 1=valid, 0=padding position (..
x L_k) bias: batch of scalar pairwise attention biases (.. x Lq x Lk x num_heads)
Outputs:
sequence projection (B x L x embed_dim), attention maps (B x L x L x num_heads)
"""
t = self.proj(x).view(*x.shape[:2], self.num_heads, -1)
t = t.permute(0, 2, 1, 3)
q, k, v = t.chunk(3, dim=-1)
q = self.rescale_factor * q
a = torch.einsum("...qc,...kc->...qk", q, k)
# Add external attention bias.
if bias is not None:
a = a + bias.permute(0, 3, 1, 2)
# Do not attend to padding tokens.
if mask is not None:
mask = mask[:, None, None]
a = a.masked_fill(mask == False, -np.inf) # noqa: E712
a = nn.functional.softmax(a, dim=-1)
y = torch.einsum("...hqk,...hkc->...qhc", a, v)
y = y.reshape(*y.shape[:2], -1)
if self.gated:
y = self.g_proj(x).sigmoid() * y
y = self.o_proj(y)
return y, a.permute(0, 3, 1, 2)
class EsmFoldDropout(nn.Module):
"""
Implementation of dropout with the ability to share the dropout mask along a particular dimension.
"""
def __init__(self, r: float, batch_dim: Union[int, List[int]]):
super().__init__()
self.r = r
if type(batch_dim) == int:
batch_dim = [batch_dim]
self.batch_dim = batch_dim
self.dropout = nn.Dropout(self.r)
def forward(self, x: torch.Tensor) -> torch.Tensor:
shape = list(x.shape)
if self.batch_dim is not None:
for bd in self.batch_dim:
shape[bd] = 1
return x * self.dropout(x.new_ones(shape))
class EsmFoldSequenceToPair(nn.Module):
def __init__(self, sequence_state_dim, inner_dim, pairwise_state_dim):
super().__init__()
self.layernorm = nn.LayerNorm(sequence_state_dim)
self.proj = nn.Linear(sequence_state_dim, inner_dim * 2, bias=True)
self.o_proj = nn.Linear(2 * inner_dim, pairwise_state_dim, bias=True)
torch.nn.init.zeros_(self.proj.bias)
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, sequence_state):
"""
Inputs:
sequence_state: B x L x sequence_state_dim
Output:
pairwise_state: B x L x L x pairwise_state_dim
Intermediate state:
B x L x L x 2*inner_dim
"""
assert len(sequence_state.shape) == 3
s = self.layernorm(sequence_state)
s = self.proj(s)
q, k = s.chunk(2, dim=-1)
prod = q[:, None, :, :] * k[:, :, None, :]
diff = q[:, None, :, :] - k[:, :, None, :]
x = torch.cat([prod, diff], dim=-1)
x = self.o_proj(x)
return x
class EsmFoldPairToSequence(nn.Module):
def __init__(self, pairwise_state_dim, num_heads):
super().__init__()
self.layernorm = nn.LayerNorm(pairwise_state_dim)
self.linear = nn.Linear(pairwise_state_dim, num_heads, bias=False)
def forward(self, pairwise_state):
"""
Inputs:
pairwise_state: B x L x L x pairwise_state_dim
Output:
pairwise_bias: B x L x L x num_heads
"""
assert len(pairwise_state.shape) == 4
z = self.layernorm(pairwise_state)
pairwise_bias = self.linear(z)
return pairwise_bias
class EsmFoldResidueMLP(nn.Module):
def __init__(self, embed_dim, inner_dim, dropout=0):
super().__init__()
self.mlp = nn.Sequential(
nn.LayerNorm(embed_dim),
nn.Linear(embed_dim, inner_dim),
nn.ReLU(),
nn.Linear(inner_dim, embed_dim),
nn.Dropout(dropout),
)
def forward(self, x):
return x + self.mlp(x)
class EsmFoldTriangularSelfAttentionBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
sequence_state_dim = config.sequence_state_dim
pairwise_state_dim = config.pairwise_state_dim
sequence_num_heads = sequence_state_dim // config.sequence_head_width
pairwise_num_heads = pairwise_state_dim // config.pairwise_head_width
self.layernorm_1 = nn.LayerNorm(sequence_state_dim)
self.sequence_to_pair = EsmFoldSequenceToPair(sequence_state_dim, pairwise_state_dim // 2, pairwise_state_dim)
self.pair_to_sequence = EsmFoldPairToSequence(pairwise_state_dim, sequence_num_heads)
self.seq_attention = EsmFoldSelfAttention(
sequence_state_dim, sequence_num_heads, config.sequence_head_width, gated=True
)
self.tri_mul_out = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=True)
self.tri_mul_in = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=False)
self.tri_att_start = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=True
)
self.tri_att_end = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=False
)
self.mlp_seq = EsmFoldResidueMLP(sequence_state_dim, 4 * sequence_state_dim, dropout=config.dropout)
self.mlp_pair = EsmFoldResidueMLP(pairwise_state_dim, 4 * pairwise_state_dim, dropout=config.dropout)
self.drop = nn.Dropout(config.dropout)
self.row_drop = EsmFoldDropout(config.dropout * 2, 2)
self.col_drop = EsmFoldDropout(config.dropout * 2, 1)
def forward(self, sequence_state, pairwise_state, mask=None, chunk_size=None, **__kwargs):
"""
Inputs:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim mask: B x L boolean
tensor of valid positions
Output:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim
"""
if len(sequence_state.shape) != 3:
raise ValueError(f"`sequence_state` should be a 3d-tensor, got {len(sequence_state.shape)} dims.")
if len(pairwise_state.shape) != 4:
raise ValueError(f"`pairwise_state` should be a 4d-tensor, got {len(pairwise_state.shape)} dims.")
if mask is not None and len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim, sequence_state_dim = sequence_state.shape
pairwise_state_dim = pairwise_state.shape[3]
if sequence_state_dim != self.config.sequence_state_dim:
raise ValueError(
"`sequence_state` last dimension should be equal to `self.sequence_state_dim`. Got"
f"{sequence_state_dim} != {self.config.sequence_state_dim}."
)
if pairwise_state_dim != self.config.pairwise_state_dim:
raise ValueError(
"`pairwise_state` last dimension should be equal to `self.pairwise_state_dim`. Got "
f"{pairwise_state_dim} != {self.config.pairwise_state_dim}."
)
if batch_dim != pairwise_state.shape[0]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent batch size: {batch_dim} != "
f"{pairwise_state.shape[0]}."
)
if seq_dim != pairwise_state.shape[1] or seq_dim != pairwise_state.shape[2]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent sequence length: {seq_dim} != "
f"{pairwise_state.shape[1]} or {pairwise_state.shape[2]}."
)
# Update sequence state
bias = self.pair_to_sequence(pairwise_state)
# Self attention with bias + mlp.
y = self.layernorm_1(sequence_state)
y, _ = self.seq_attention(y, mask=mask, bias=bias)
sequence_state = sequence_state + self.drop(y)
sequence_state = self.mlp_seq(sequence_state)
# Update pairwise state
pairwise_state = pairwise_state + self.sequence_to_pair(sequence_state)
# Axial attention with triangular bias.
tri_mask = mask.unsqueeze(2) * mask.unsqueeze(1) if mask is not None else None
pairwise_state = pairwise_state + self.row_drop(self.tri_mul_out(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.col_drop(self.tri_mul_in(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.row_drop(
self.tri_att_start(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
pairwise_state = pairwise_state + self.col_drop(
self.tri_att_end(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
# MLP over pairs.
pairwise_state = self.mlp_pair(pairwise_state)
return sequence_state, pairwise_state
class EsmCategoricalMixture:
def __init__(self, param, bins=50, start=0, end=1):
# All tensors are of shape ..., bins.
self.logits = param
bins = torch.linspace(start, end, bins + 1, device=self.logits.device, dtype=self.logits.dtype)
self.v_bins = (bins[:-1] + bins[1:]) / 2
def log_prob(self, true):
# Shapes are:
# self.probs: ... x bins
# true : ...
true_index = (true.unsqueeze(-1) - self.v_bins[[None] * true.ndim]).abs().argmin(-1)
nll = self.logits.log_softmax(-1)
return torch.take_along_dim(nll, true_index.unsqueeze(-1), dim=-1).squeeze(-1)
def mean(self):
return (self.logits.softmax(-1) @ self.v_bins.unsqueeze(1)).squeeze(-1)
def categorical_lddt(logits, bins=50):
# Logits are ..., 37, bins.
return EsmCategoricalMixture(logits, bins=bins).mean()
def get_axial_mask(mask):
"""
Helper to convert B x L mask of valid positions to axial mask used in row column attentions.
Input:
mask: B x L tensor of booleans
Output:
mask: B x L x L tensor of booleans
"""
if mask is None:
return None
if len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim = mask.shape
m = mask.unsqueeze(1).expand(batch_dim, seq_dim, seq_dim)
m = m.reshape(batch_dim * seq_dim, seq_dim)
return m
class EsmFoldRelativePosition(nn.Module):
def __init__(self, config):
super().__init__()
self.bins = config.position_bins
# Note an additional offset is used so that the 0th position
# is reserved for masked pairs.
self.embedding = torch.nn.Embedding(2 * self.bins + 2, config.pairwise_state_dim)
def forward(self, residue_index, mask=None):
"""
Input:
residue_index: B x L tensor of indices (dytpe=torch.long) mask: B x L tensor of booleans
Output:
pairwise_state: B x L x L x pairwise_state_dim tensor of embeddings
"""
if residue_index.dtype != torch.long:
raise ValueError(f"`residue_index` has dtype {residue_index.dtype}, it should be `torch.long`.")
if mask is not None and residue_index.shape != mask.shape:
raise ValueError(
f"`residue_index` and `mask` have inconsistent shapes: {residue_index.shape} != {mask.shape}."
)
diff = residue_index[:, None, :] - residue_index[:, :, None]
diff = diff.clamp(-self.bins, self.bins)
diff = diff + self.bins + 1 # Add 1 to adjust for padding index.
if mask is not None:
mask = mask[:, None, :] * mask[:, :, None]
diff[mask == False] = 0 # noqa: E712
output = self.embedding(diff)
return output
class EsmFoldAngleResnetBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="final")
self.relu = nn.ReLU()
def forward(self, a: torch.Tensor) -> torch.Tensor:
s_initial = a
a = self.relu(a)
a = self.linear_1(a)
a = self.relu(a)
a = self.linear_2(a)
return a + s_initial
class EsmFoldAngleResnet(nn.Module):
"""
Implements Algorithm 20, lines 11-14
"""
def __init__(self, config):
super().__init__()
self.config = config
self.linear_in = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.linear_initial = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.layers = nn.ModuleList()
for _ in range(config.num_resnet_blocks):
layer = EsmFoldAngleResnetBlock(config)
self.layers.append(layer)
self.linear_out = EsmFoldLinear(config.resnet_dim, config.num_angles * 2)
self.relu = nn.ReLU()
def forward(self, s: torch.Tensor, s_initial: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
s:
[*, C_hidden] single embedding
s_initial:
[*, C_hidden] single embedding as of the start of the StructureModule
Returns:
[*, no_angles, 2] predicted angles
"""
# NOTE: The ReLU's applied to the inputs are absent from the supplement
# pseudocode but present in the source. For maximal compatibility with
# the pretrained weights, I'm going with the source.
# [*, C_hidden]
s_initial = self.relu(s_initial)
s_initial = self.linear_initial(s_initial)
s = self.relu(s)
s = self.linear_in(s)
s = s + s_initial
for l in self.layers:
s = l(s)
s = self.relu(s)
# [*, no_angles * 2]
s = self.linear_out(s)
# [*, no_angles, 2]
s = s.view(s.shape[:-1] + (-1, 2))
unnormalized_s = s
norm_denom = torch.sqrt(
torch.clamp(
torch.sum(s**2, dim=-1, keepdim=True),
min=self.config.epsilon,
)
)
s = s / norm_denom
return unnormalized_s, s
class EsmFoldInvariantPointAttention(nn.Module):
"""
Implements Algorithm 22.
"""
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_dim
c_z = config.pairwise_dim
self.hidden_dim = config.ipa_dim
self.num_heads = config.num_heads_ipa
self.num_qk_points = config.num_qk_points
self.num_v_points = config.num_v_points
# These linear layers differ from their specifications in the
# supplement. There, they lack bias and use Glorot initialization.
# Here as in the official source, they have bias and use the default
# Lecun initialization.
hc = config.ipa_dim * config.num_heads_ipa
self.linear_q = EsmFoldLinear(c_s, hc)
self.linear_kv = EsmFoldLinear(c_s, 2 * hc)
hpq = config.num_heads_ipa * config.num_qk_points * 3
self.linear_q_points = EsmFoldLinear(c_s, hpq)
hpkv = config.num_heads_ipa * (config.num_qk_points + config.num_v_points) * 3
self.linear_kv_points = EsmFoldLinear(c_s, hpkv)
self.linear_b = EsmFoldLinear(c_z, config.num_heads_ipa)
self.head_weights = nn.Parameter(torch.zeros((config.num_heads_ipa)))
concat_out_dim = config.num_heads_ipa * (c_z + config.ipa_dim + config.num_v_points * 4)
self.linear_out = EsmFoldLinear(concat_out_dim, c_s, init="final")
self.softmax = nn.Softmax(dim=-1)
self.softplus = nn.Softplus()
def forward(
self,
s: torch.Tensor,
z: Optional[torch.Tensor],
r: Rigid,
mask: torch.Tensor,
_offload_inference: bool = False,
_z_reference_list: Optional[Sequence[torch.Tensor]] = None,
) -> torch.Tensor:
"""
Args:
s:
[*, N_res, C_s] single representation
z:
[*, N_res, N_res, C_z] pair representation
r:
[*, N_res] transformation object
mask:
[*, N_res] mask
Returns:
[*, N_res, C_s] single representation update
"""
z = [z]
#######################################
# Generate scalar and point activations
#######################################
# [*, N_res, H * C_hidden]
q = self.linear_q(s)
kv = self.linear_kv(s)
# [*, N_res, H, C_hidden]
q = q.view(q.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, 2 * C_hidden]
kv = kv.view(kv.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, C_hidden]
k, v = torch.split(kv, self.hidden_dim, dim=-1)
# [*, N_res, H * P_q * 3]
q_pts = self.linear_q_points(s)
# This is kind of clunky, but it's how the original does it
# [*, N_res, H * P_q, 3]
q_pts = torch.split(q_pts, q_pts.shape[-1] // 3, dim=-1)
q_pts = torch.stack(q_pts, dim=-1)
q_pts = r[..., None].apply(q_pts)
# [*, N_res, H, P_q, 3]
q_pts = q_pts.view(q_pts.shape[:-2] + (self.num_heads, self.num_qk_points, 3))
# [*, N_res, H * (P_q + P_v) * 3]
kv_pts = self.linear_kv_points(s)
# [*, N_res, H * (P_q + P_v), 3]
kv_pts = torch.split(kv_pts, kv_pts.shape[-1] // 3, dim=-1)
kv_pts = torch.stack(kv_pts, dim=-1)
kv_pts = r[..., None].apply(kv_pts)
# [*, N_res, H, (P_q + P_v), 3]
kv_pts = kv_pts.view(kv_pts.shape[:-2] + (self.num_heads, -1, 3))
# [*, N_res, H, P_q/P_v, 3]
k_pts, v_pts = torch.split(kv_pts, [self.num_qk_points, self.num_v_points], dim=-2)
##########################
# Compute attention scores
##########################
# [*, N_res, N_res, H]
b = self.linear_b(z[0])
if _offload_inference:
assert sys.getrefcount(z[0]) == 2
z[0] = z[0].cpu()
# [*, H, N_res, N_res]
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
a = torch.matmul(
permute_final_dims(q.float(), (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k.float(), (1, 2, 0)), # [*, H, C_hidden, N_res]
)
else:
a = torch.matmul(
permute_final_dims(q, (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k, (1, 2, 0)), # [*, H, C_hidden, N_res]
)
a *= math.sqrt(1.0 / (3 * self.hidden_dim))
a += math.sqrt(1.0 / 3) * permute_final_dims(b, (2, 0, 1))
# [*, N_res, N_res, H, P_q, 3]
pt_att = q_pts.unsqueeze(-4) - k_pts.unsqueeze(-5)
pt_att = pt_att**2
# [*, N_res, N_res, H, P_q]
pt_att = sum(torch.unbind(pt_att, dim=-1))
head_weights = self.softplus(self.head_weights).view(*((1,) * len(pt_att.shape[:-2]) + (-1, 1)))
head_weights = head_weights * math.sqrt(1.0 / (3 * (self.num_qk_points * 9.0 / 2)))
pt_att = pt_att * head_weights
# [*, N_res, N_res, H]
pt_att = torch.sum(pt_att, dim=-1) * (-0.5)
# [*, N_res, N_res]
square_mask = mask.unsqueeze(-1) * mask.unsqueeze(-2)
square_mask = self.config.inf * (square_mask - 1)
# [*, H, N_res, N_res]
pt_att = permute_final_dims(pt_att, (2, 0, 1))
a = a + pt_att
a = a + square_mask.unsqueeze(-3)
a = self.softmax(a)
################
# Compute output
################
# [*, N_res, H, C_hidden]
o = torch.matmul(a, v.transpose(-2, -3).to(dtype=a.dtype)).transpose(-2, -3)
# [*, N_res, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, H, 3, N_res, P_v]
o_pt = torch.sum(
(a[..., None, :, :, None] * permute_final_dims(v_pts, (1, 3, 0, 2))[..., None, :, :]),
dim=-2,
)
# [*, N_res, H, P_v, 3]
o_pt = permute_final_dims(o_pt, (2, 0, 3, 1))
o_pt = r[..., None, None].invert_apply(o_pt)
# [*, N_res, H * P_v]
o_pt_norm = flatten_final_dims(torch.sqrt(torch.sum(o_pt**2, dim=-1) + self.config.epsilon), 2)
# [*, N_res, H * P_v, 3]
o_pt = o_pt.reshape(*o_pt.shape[:-3], -1, 3)
if _offload_inference:
z[0] = z[0].to(o_pt.device)
# [*, N_res, H, C_z]
o_pair = torch.matmul(a.transpose(-2, -3), z[0].to(dtype=a.dtype))
# [*, N_res, H * C_z]
o_pair = flatten_final_dims(o_pair, 2)
# [*, N_res, C_s]
s = self.linear_out(
torch.cat((o, *torch.unbind(o_pt, dim=-1), o_pt_norm, o_pair), dim=-1).to(dtype=z[0].dtype)
)
return s
class EsmFoldBackboneUpdate(nn.Module):
"""
Implements part of Algorithm 23.
"""
def __init__(self, config):
super().__init__()
self.linear = EsmFoldLinear(config.sequence_dim, 6, init="final")
def forward(self, s: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
[*, N_res, C_s] single representation
Returns:
[*, N_res, 6] update vector
"""
# [*, 6]
update = self.linear(s)
return update
class EsmFoldStructureModuleTransitionLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_3 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="final")
self.relu = nn.ReLU()
def forward(self, s):
s_initial = s
s = self.linear_1(s)
s = self.relu(s)
s = self.linear_2(s)
s = self.relu(s)
s = self.linear_3(s)
s = s + s_initial
return s
class EsmFoldStructureModuleTransition(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layers = nn.ModuleList()
for _ in range(config.num_transition_layers):
l = EsmFoldStructureModuleTransitionLayer(config)
self.layers.append(l)
self.dropout = nn.Dropout(config.dropout_rate)
self.layer_norm = LayerNorm(config.sequence_dim)
def forward(self, s):
for l in self.layers:
s = l(s)
s = self.dropout(s)
s = self.layer_norm(s)
return s
class EsmFoldStructureModule(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
# Buffers to be lazily initialized later
# self.default_frames
# self.group_idx
# self.atom_mask
# self.lit_positions
self.layer_norm_s = LayerNorm(config.sequence_dim)
self.layer_norm_z = LayerNorm(config.pairwise_dim)
self.linear_in = EsmFoldLinear(config.sequence_dim, config.sequence_dim)
self.ipa = EsmFoldInvariantPointAttention(config)
self.ipa_dropout = nn.Dropout(config.dropout_rate)
self.layer_norm_ipa = LayerNorm(config.sequence_dim)
self.transition = EsmFoldStructureModuleTransition(config)
self.bb_update = EsmFoldBackboneUpdate(config)
self.angle_resnet = EsmFoldAngleResnet(config)
def forward(
self,
evoformer_output_dict,
aatype,
mask=None,
_offload_inference=False,
):
"""
Args:
evoformer_output_dict:
Dictionary containing:
"single":
[*, N_res, C_s] single representation
"pair":
[*, N_res, N_res, C_z] pair representation
aatype:
[*, N_res] amino acid indices
mask:
Optional [*, N_res] sequence mask
Returns:
A dictionary of outputs
"""
s = evoformer_output_dict["single"]
if mask is None:
# [*, N]
mask = s.new_ones(s.shape[:-1])
# [*, N, C_s]
s = self.layer_norm_s(s)
# [*, N, N, C_z]
z = self.layer_norm_z(evoformer_output_dict["pair"])
z_reference_list = None
if _offload_inference:
assert sys.getrefcount(evoformer_output_dict["pair"]) == 2
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].cpu()
z_reference_list = [z]
z = None
# [*, N, C_s]
s_initial = s
s = self.linear_in(s)
# [*, N]
rigids = Rigid.identity(
s.shape[:-1],
s.dtype,
s.device,
self.training,
fmt="quat",
)
outputs = []
for i in range(self.config.num_blocks):
# [*, N, C_s]
s = s + self.ipa(
s,
z,
rigids,
mask,
_offload_inference=_offload_inference,
_z_reference_list=z_reference_list,
)
s = self.ipa_dropout(s)
s = self.layer_norm_ipa(s)
s = self.transition(s)
# [*, N]
rigids = rigids.compose_q_update_vec(self.bb_update(s))
# To hew as closely as possible to AlphaFold, we convert our
# quaternion-based transformations to rotation-matrix ones
# here
backb_to_global = Rigid(
Rotation(rot_mats=rigids.get_rots().get_rot_mats(), quats=None),
rigids.get_trans(),
)
backb_to_global = backb_to_global.scale_translation(self.config.trans_scale_factor)
# [*, N, 7, 2]
unnormalized_angles, angles = self.angle_resnet(s, s_initial)
all_frames_to_global = self.torsion_angles_to_frames(backb_to_global, angles, aatype)
pred_xyz = self.frames_and_literature_positions_to_atom14_pos(all_frames_to_global, aatype)
scaled_rigids = rigids.scale_translation(self.config.trans_scale_factor)
preds = {
"frames": scaled_rigids.to_tensor_7(),
"sidechain_frames": all_frames_to_global.to_tensor_4x4(),
"unnormalized_angles": unnormalized_angles,
"angles": angles,
"positions": pred_xyz,
"states": s,
}
outputs.append(preds)
rigids = rigids.stop_rot_gradient()
del z, z_reference_list
if _offload_inference:
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].to(s.device)
outputs = dict_multimap(torch.stack, outputs)
outputs["single"] = s
return outputs
def _init_residue_constants(self, float_dtype, device):
if not hasattr(self, "default_frames"):
self.register_buffer(
"default_frames",
torch.tensor(
residue_constants.restype_rigid_group_default_frame,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "group_idx"):
self.register_buffer(
"group_idx",
torch.tensor(
residue_constants.restype_atom14_to_rigid_group,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "atom_mask"):
self.register_buffer(
"atom_mask",
torch.tensor(
residue_constants.restype_atom14_mask,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "lit_positions"):
self.register_buffer(
"lit_positions",
torch.tensor(
residue_constants.restype_atom14_rigid_group_positions,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
def torsion_angles_to_frames(self, r, alpha, f):
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(alpha.dtype, alpha.device)
# Separated purely to make testing less annoying
return torsion_angles_to_frames(r, alpha, f, self.default_frames)
def frames_and_literature_positions_to_atom14_pos(self, r, f): # [*, N, 8] # [*, N]
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(r.get_rots().dtype, r.get_rots().device)
return frames_and_literature_positions_to_atom14_pos(
r,
f,
self.default_frames,
self.group_idx,
self.atom_mask,
self.lit_positions,
)
class EsmFoldingTrunk(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_state_dim
c_z = config.pairwise_state_dim
self.pairwise_positional_embedding = EsmFoldRelativePosition(config)
self.blocks = nn.ModuleList([EsmFoldTriangularSelfAttentionBlock(config) for _ in range(config.num_blocks)])
self.recycle_bins = 15
self.recycle_s_norm = nn.LayerNorm(c_s)
self.recycle_z_norm = nn.LayerNorm(c_z)
self.recycle_disto = nn.Embedding(self.recycle_bins, c_z)
self.recycle_disto.weight[0].detach().zero_()
self.structure_module = EsmFoldStructureModule(config.structure_module)
self.trunk2sm_s = nn.Linear(c_s, config.structure_module.sequence_dim)
self.trunk2sm_z = nn.Linear(c_z, config.structure_module.pairwise_dim)
self.chunk_size = config.chunk_size
def set_chunk_size(self, chunk_size):
# This parameter means the axial attention will be computed
# in a chunked manner. This should make the memory used more or less O(L) instead of O(L^2).
# It's equivalent to running a for loop over chunks of the dimension we're iterative over,
# where the chunk_size is the size of the chunks, so 128 would mean to parse 128-lengthed chunks.
self.chunk_size = chunk_size
def forward(self, seq_feats, pair_feats, true_aa, residx, mask, no_recycles):
"""
Inputs:
seq_feats: B x L x C tensor of sequence features pair_feats: B x L x L x C tensor of pair features residx: B
x L long tensor giving the position in the sequence mask: B x L boolean tensor indicating valid residues
Output:
predicted_structure: B x L x (num_atoms_per_residue * 3) tensor wrapped in a Coordinates object
"""
device = seq_feats.device
s_s_0 = seq_feats
s_z_0 = pair_feats
if no_recycles is None:
no_recycles = self.config.max_recycles
else:
if no_recycles < 0:
raise ValueError("Number of recycles must not be negative.")
no_recycles += 1 # First 'recycle' is just the standard forward pass through the model.
def trunk_iter(s, z, residx, mask):
z = z + self.pairwise_positional_embedding(residx, mask=mask)
for block in self.blocks:
s, z = block(s, z, mask=mask, residue_index=residx, chunk_size=self.chunk_size)
return s, z
s_s = s_s_0
s_z = s_z_0
recycle_s = torch.zeros_like(s_s)
recycle_z = torch.zeros_like(s_z)
recycle_bins = torch.zeros(*s_z.shape[:-1], device=device, dtype=torch.int64)
for recycle_idx in range(no_recycles):
with ContextManagers([] if recycle_idx == no_recycles - 1 else [torch.no_grad()]):
# === Recycling ===
recycle_s = self.recycle_s_norm(recycle_s.detach()).to(device)
recycle_z = self.recycle_z_norm(recycle_z.detach()).to(device)
recycle_z += self.recycle_disto(recycle_bins.detach()).to(device)
s_s, s_z = trunk_iter(s_s_0 + recycle_s, s_z_0 + recycle_z, residx, mask)
# === Structure module ===
structure = self.structure_module(
{"single": self.trunk2sm_s(s_s), "pair": self.trunk2sm_z(s_z)},
true_aa,
mask.float(),
)
recycle_s = s_s
recycle_z = s_z
# Distogram needs the N, CA, C coordinates, and bin constants same as alphafold.
recycle_bins = EsmFoldingTrunk.distogram(
structure["positions"][-1][:, :, :3],
3.375,
21.375,
self.recycle_bins,
)
structure["s_s"] = s_s
structure["s_z"] = s_z
return structure
@staticmethod
def distogram(coords, min_bin, max_bin, num_bins):
# Coords are [... L x 3 x 3], where it's [N, CA, C] x 3 coordinates.
boundaries = torch.linspace(
min_bin,
max_bin,
num_bins - 1,
device=coords.device,
)
boundaries = boundaries**2
N, CA, C = [x.squeeze(-2) for x in coords.chunk(3, dim=-2)]
# Infer CB coordinates.
b = CA - N
c = C - CA
a = b.cross(c, dim=-1)
CB = -0.58273431 * a + 0.56802827 * b - 0.54067466 * c + CA
dists = (CB[..., None, :, :] - CB[..., :, None, :]).pow(2).sum(dim=-1, keepdims=True)
bins = torch.sum(dists > boundaries, dim=-1) # [..., L, L]
return bins
# TODO Add information to the docstring about any methods that convert to PDB format, or otherwise prepare
# the outputs for downstream use.
@add_start_docstrings(
"""
ESMForProteinFolding is the HuggingFace port of the original ESMFold model. It consists of an ESM-2 "stem" followed
by a protein folding "head", although unlike most other output heads, this "head" is similar in size and runtime to
the rest of the model combined! It outputs a dictionary containing predicted structural information about the input
protein(s).
""",
ESM_START_DOCSTRING,
)
class EsmForProteinFolding(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.distogram_bins = 64
self.esm = EsmModel(config, add_pooling_layer=False)
self.esm.requires_grad_(False)
if self.config.esmfold_config.fp16_esm:
self.esm.half()
self.esm_feats = self.config.hidden_size
self.esm_attns = self.config.num_hidden_layers * self.config.num_attention_heads
self.esm_layers = self.config.num_hidden_layers
self.register_buffer("af2_to_esm", self._af2_to_esm_from_vocab_list(config.vocab_list))
self.esm_s_combine = nn.Parameter(torch.zeros(self.esm_layers + 1))
trunk_config = self.config.esmfold_config.trunk
c_s = trunk_config.sequence_state_dim
c_z = trunk_config.pairwise_state_dim
self.esm_s_mlp = nn.Sequential(
LayerNorm(self.esm_feats),
nn.Linear(self.esm_feats, c_s),
nn.ReLU(),
nn.Linear(c_s, c_s),
)
# 0 is padding, N is unknown residues, N + 1 is mask.
self.n_tokens_embed = residue_constants.restype_num + 3
self.pad_idx = 0
self.unk_idx = self.n_tokens_embed - 2
self.mask_idx = self.n_tokens_embed - 1
self.esm_dict_cls_idx = self.config.vocab_list.index("<cls>")
self.esm_dict_mask_idx = self.config.vocab_list.index("<mask>")
self.esm_dict_eos_idx = self.config.vocab_list.index("<eos>")
self.esm_dict_padding_idx = self.config.vocab_list.index("<pad>")
if self.config.esmfold_config.embed_aa:
self.embedding = nn.Embedding(self.n_tokens_embed, c_s, padding_idx=0)
self.trunk = EsmFoldingTrunk(trunk_config)
self.distogram_head = nn.Linear(c_z, self.distogram_bins)
self.ptm_head = nn.Linear(c_z, self.distogram_bins)
self.lm_head = nn.Linear(c_s, self.n_tokens_embed)
self.lddt_bins = 50
structure_module_config = trunk_config.structure_module
self.lddt_head = nn.Sequential(
nn.LayerNorm(structure_module_config.sequence_dim),
nn.Linear(structure_module_config.sequence_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, 37 * self.lddt_bins),
)
@staticmethod
def _af2_to_esm_from_vocab_list(vocab_list: List[str]) -> torch.Tensor:
# Remember that t is shifted from residue_constants by 1 (0 is padding).
esm_reorder = [vocab_list.index("<pad>")] + [vocab_list.index(v) for v in residue_constants.restypes_with_x]
return torch.tensor(esm_reorder)
@add_start_docstrings_to_model_forward(ESMFOLD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=EsmForProteinFoldingOutput, config_class=EsmConfig)
def forward(
self,
input_ids: torch.Tensor,
attention_mask: torch.Tensor = None,
position_ids: Optional[torch.Tensor] = None,
masking_pattern: Optional[torch.Tensor] = None,
num_recycles: Optional[int] = None,
):
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, EsmForProteinFolding
>>> model = EsmForProteinFolding.from_pretrained("facebook/esmfold_v1")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/esmfold_v1")
>>> inputs = tokenizer(["MLKNVQVQLV"], return_tensors="pt", add_special_tokens=False) # A tiny random peptide
>>> outputs = model(**inputs)
>>> folded_positions = outputs.positions
```
"""
cfg = self.config.esmfold_config
aa = input_ids # B x L
B = aa.shape[0]
L = aa.shape[1]
device = input_ids.device
if attention_mask is None:
attention_mask = torch.ones_like(aa, device=device)
if position_ids is None:
position_ids = torch.arange(L, device=device).expand_as(input_ids)
# === ESM ===
esmaa = self.af2_idx_to_esm_idx(aa, attention_mask)
if masking_pattern is not None:
masked_aa, esmaa, mlm_targets = self.bert_mask(aa, esmaa, attention_mask, masking_pattern)
else:
masked_aa = aa
mlm_targets = None
# We get sequence and pair representations from whatever version of ESM /
# configuration we are using. The sequence representation esm_s is always
# present. The pair embedding esm_z may be present depending on the
# configuration of the model. If esm_z is not used by the model then it
# is returned as None here.
esm_s = self.compute_language_model_representations(esmaa)
# Convert esm_s and esm_z, if present, to the precision used by the trunk and
# the structure module. These tensors may be a lower precision if, for example,
# we're running the language model in fp16 precision.
esm_s = esm_s.to(self.esm_s_combine.dtype)
if cfg.esm_ablate_sequence:
esm_s = esm_s * 0
esm_s = esm_s.detach()
# === preprocessing ===
esm_s = (self.esm_s_combine.softmax(0).unsqueeze(0) @ esm_s).squeeze(2)
s_s_0 = self.esm_s_mlp(esm_s)
s_z_0 = s_s_0.new_zeros(B, L, L, cfg.trunk.pairwise_state_dim)
if self.config.esmfold_config.embed_aa:
s_s_0 += self.embedding(masked_aa)
structure: dict = self.trunk(s_s_0, s_z_0, aa, position_ids, attention_mask, no_recycles=num_recycles)
# Documenting what we expect:
structure = {
k: v
for k, v in structure.items()
if k
in [
"s_z",
"s_s",
"frames",
"sidechain_frames",
"unnormalized_angles",
"angles",
"positions",
"states",
]
}
# Add BERT mask for the loss to use, if available.
if mlm_targets:
structure["mlm_targets"] = mlm_targets
disto_logits = self.distogram_head(structure["s_z"])
disto_logits = (disto_logits + disto_logits.transpose(1, 2)) / 2
structure["distogram_logits"] = disto_logits
lm_logits = self.lm_head(structure["s_s"])
structure["lm_logits"] = lm_logits
structure["aatype"] = aa
make_atom14_masks(structure)
# Of course, this doesn't respect the true mask because it doesn't know about it...
# We're not going to properly mask change of index tensors:
# "residx_atom14_to_atom37",
# "residx_atom37_to_atom14",
for k in [
"atom14_atom_exists",
"atom37_atom_exists",
]:
structure[k] *= attention_mask.unsqueeze(-1)
structure["residue_index"] = position_ids
lddt_head = self.lddt_head(structure["states"]).reshape(structure["states"].shape[0], B, L, -1, self.lddt_bins)
structure["lddt_head"] = lddt_head
plddt = categorical_lddt(lddt_head[-1], bins=self.lddt_bins)
structure["plddt"] = plddt
ptm_logits = self.ptm_head(structure["s_z"])
structure["ptm_logits"] = ptm_logits
structure["ptm"] = compute_tm(ptm_logits, max_bin=31, no_bins=self.distogram_bins)
structure.update(compute_predicted_aligned_error(ptm_logits, max_bin=31, no_bins=self.distogram_bins))
return EsmForProteinFoldingOutput(**structure)
def af2_idx_to_esm_idx(self, aa, mask):
# avoid indexing on different devices
if self.af2_to_esm.device != aa.device:
self.af2_to_esm = self.af2_to_esm.to(aa.device)
aa = (aa + 1).masked_fill(mask != 1, 0)
return self.af2_to_esm[aa]
def compute_language_model_representations(self, esmaa: torch.Tensor) -> torch.Tensor:
device = next(self.parameters()).device
B, L = esmaa.shape # B = batch size, L = sequence length.
if self.config.esmfold_config.bypass_lm:
esm_s = torch.zeros(B, L, self.esm_s_combine.size[0], -1, self.esm_feats, device=device)
return esm_s
bosi, eosi = self.esm_dict_cls_idx, self.esm_dict_eos_idx
bos = esmaa.new_full((B, 1), bosi)
eos = esmaa.new_full((B, 1), self.esm_dict_padding_idx)
esmaa = torch.cat([bos, esmaa, eos], dim=1)
# Use the first padding index as eos during inference.
esmaa[range(B), (esmaa != 1).sum(1)] = eosi
# _, esm_z, esm_s = self.esm(esmaa, return_pairs=self.config.esmfold_config.use_esm_attn_map)
# Because we do not support use_esm_attn_map in the HF port as it is not used in any public models,
# esm_z is always None
esm_hidden_states = self.esm(esmaa, attention_mask=esmaa != 1, output_hidden_states=True)["hidden_states"]
esm_s = torch.stack(esm_hidden_states, dim=2)
esm_s = esm_s[:, 1:-1] # B, L, nLayers, C
return esm_s
def bert_mask(self, aa, esmaa, mask, pattern):
new_aa = aa.clone()
target = aa.clone()
new_esmaa = esmaa.clone()
new_aa[pattern == 1] = self.mask_idx
target[pattern != 1] = 0
new_esmaa[pattern == 1] = self.esm_dict_mask_idx
return new_aa, new_esmaa, target
@torch.no_grad()
def infer(
self,
seqs: Union[str, List[str]],
position_ids=None,
):
if type(seqs) is str:
lst = [seqs]
else:
lst = seqs
# Returns the raw outputs of the model given an input sequence.
device = next(self.parameters()).device
aatype = collate_dense_tensors(
[
torch.from_numpy(
residue_constants.sequence_to_onehot(
sequence=seq,
mapping=residue_constants.restype_order_with_x,
map_unknown_to_x=True,
)
)
.to(device)
.argmax(dim=1)
for seq in lst
]
) # B=1 x L
mask = collate_dense_tensors([aatype.new_ones(len(seq)) for seq in lst])
position_ids = (
torch.arange(aatype.shape[1], device=device).expand(len(lst), -1)
if position_ids is None
else position_ids.to(device)
)
if position_ids.ndim == 1:
position_ids = position_ids.unsqueeze(0)
return self.forward(
aatype,
mask,
position_ids=position_ids,
)
@staticmethod
def output_to_pdb(output: Dict) -> List[str]:
"""Returns the pbd (file) string from the model given the model output."""
output = {k: v.to("cpu").numpy() for k, v in output.items()}
pdbs = []
final_atom_positions = atom14_to_atom37(output["positions"][-1], output)
final_atom_mask = output["atom37_atom_exists"]
for i in range(output["aatype"].shape[0]):
aa = output["aatype"][i]
pred_pos = final_atom_positions[i]
mask = final_atom_mask[i]
resid = output["residue_index"][i] + 1
pred = OFProtein(
aatype=aa,
atom_positions=pred_pos,
atom_mask=mask,
residue_index=resid,
b_factors=output["plddt"][i],
)
pdbs.append(to_pdb(pred))
return pdbs
def infer_pdb(self, seqs, *args, **kwargs) -> str:
"""Returns the pdb (file) string from the model given an input sequence."""
assert type(seqs) is str
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)[0]
def infer_pdbs(self, seqs: List[str], *args, **kwargs) -> List[str]:
"""Returns the pdb (file) string from the model given an input sequence."""
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)
| 86,749 | 36.376131 | 119 | py |
transformers | transformers-main/src/transformers/models/esm/tokenization_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for ESM."""
import os
from typing import List, Optional, Union
from ...tokenization_utils import PreTrainedTokenizer
from ...tokenization_utils_base import AddedToken
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"facebook/esm2_t6_8M_UR50D": "https://huggingface.co/facebook/esm2_t6_8M_UR50D/resolve/main/vocab.txt",
"facebook/esm2_t12_35M_UR50D": "https://huggingface.co/facebook/esm2_t12_35M_UR50D/resolve/main/vocab.txt",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"facebook/esm2_t6_8M_UR50D": 1024,
"facebook/esm2_t12_35M_UR50D": 1024,
}
def load_vocab_file(vocab_file):
with open(vocab_file, "r") as f:
lines = f.read().splitlines()
return [l.strip() for l in lines]
class EsmTokenizer(PreTrainedTokenizer):
"""
Constructs an ESM tokenizer.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
unk_token="<unk>",
cls_token="<cls>",
pad_token="<pad>",
mask_token="<mask>",
eos_token="<eos>",
**kwargs,
):
super().__init__(**kwargs)
self.all_tokens = load_vocab_file(vocab_file)
self._id_to_token = dict(enumerate(self.all_tokens))
self._token_to_id = {tok: ind for ind, tok in enumerate(self.all_tokens)}
self.unk_token = unk_token
self.cls_token = cls_token
self.pad_token = pad_token
self.mask_token = mask_token
self.eos_token = eos_token
self.unique_no_split_tokens = self.all_tokens
self._create_trie(self.unique_no_split_tokens)
def _convert_id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def _convert_token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def _tokenize(self, text, **kwargs):
return text.split()
def get_vocab_size(self, with_added_tokens=False):
return len(self._id_to_token)
def get_vocab(self):
return {token: i for i, token in enumerate(self.all_tokens)}
def token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
cls = [self.cls_token_id]
sep = [self.eos_token_id] # No sep token in ESM vocabulary
if token_ids_1 is None:
if self.eos_token_id is None:
return cls + token_ids_0
else:
return cls + token_ids_0 + sep
elif self.eos_token_id is None:
raise ValueError("Cannot tokenize multiple sequences when EOS token is not set!")
return cls + token_ids_0 + sep + token_ids_1 + sep # Multiple inputs always have an EOS token
def get_special_tokens_mask(
self, token_ids_0: List, token_ids_1: Optional[List] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieves sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` or `encode_plus` methods.
Args:
token_ids_0 (`List[int]`):
List of ids of the first sequence.
token_ids_1 (`List[int]`, *optional*):
List of ids of the second sequence.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return [1 if token in self.all_special_ids else 0 for token in token_ids_0]
mask = [1] + ([0] * len(token_ids_0)) + [1]
if token_ids_1 is not None:
mask += [0] * len(token_ids_1) + [1]
return mask
def save_vocabulary(self, save_directory, filename_prefix):
vocab_file = os.path.join(save_directory, (filename_prefix + "-" if filename_prefix else "") + "vocab.txt")
with open(vocab_file, "w") as f:
f.write("\n".join(self.all_tokens))
return (vocab_file,)
@property
def vocab_size(self) -> int:
return self.get_vocab_size(with_added_tokens=False)
def _add_tokens(self, new_tokens: Union[List[str], List[AddedToken]], special_tokens: bool = False) -> int:
return super()._add_tokens(new_tokens, special_tokens=True)
| 6,015 | 37.318471 | 116 | py |
transformers | transformers-main/src/transformers/models/esm/configuration_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" ESM model configuration"""
from dataclasses import asdict, dataclass
from typing import Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
# TODO Update this
ESM_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/esm-1b": "https://huggingface.co/facebook/esm-1b/resolve/main/config.json",
# See all ESM models at https://huggingface.co/models?filter=esm
}
class EsmConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ESMModel`]. It is used to instantiate a ESM model
according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the ESM
[facebook/esm-1b](https://huggingface.co/facebook/esm-1b) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*):
Vocabulary size of the ESM model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`ESMModel`].
mask_token_id (`int`, *optional*):
The index of the mask token in the vocabulary. This must be included in the config because of the
"mask-dropout" scaling trick, which will scale the inputs depending on the number of masked tokens.
pad_token_id (`int`, *optional*):
The index of the padding token in the vocabulary. This must be included in the config because certain parts
of the ESM code use this instead of the attention mask.
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 1026):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query", "rotary"`.
For positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
emb_layer_norm_before (`bool`, *optional*):
Whether to apply layer normalization after embeddings but before the main stem of the network.
token_dropout (`bool`, defaults to `False`):
When this is enabled, masked tokens are treated as if they had been dropped out by input dropout.
Examples:
```python
>>> from transformers import EsmModel, EsmConfig
>>> # Initializing a ESM facebook/esm-1b style configuration >>> configuration = EsmConfig()
>>> # Initializing a model from the configuration >>> model = ESMModel(configuration)
>>> # Accessing the model configuration >>> configuration = model.config
```"""
model_type = "esm"
def __init__(
self,
vocab_size=None,
mask_token_id=None,
pad_token_id=None,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=1026,
initializer_range=0.02,
layer_norm_eps=1e-12,
position_embedding_type="absolute",
use_cache=True,
emb_layer_norm_before=None,
token_dropout=False,
is_folding_model=False,
esmfold_config=None,
vocab_list=None,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, mask_token_id=mask_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.emb_layer_norm_before = emb_layer_norm_before
self.token_dropout = token_dropout
self.is_folding_model = is_folding_model
if is_folding_model:
if esmfold_config is None:
logger.info("No esmfold_config supplied for folding model, using default values.")
esmfold_config = EsmFoldConfig()
elif isinstance(esmfold_config, dict):
esmfold_config = EsmFoldConfig(**esmfold_config)
self.esmfold_config = esmfold_config
if vocab_list is None:
logger.warning("No vocab_list supplied for folding model, assuming the ESM-2 vocabulary!")
self.vocab_list = get_default_vocab_list()
else:
self.vocab_list = vocab_list
else:
self.esmfold_config = None
self.vocab_list = None
if self.esmfold_config is not None and getattr(self.esmfold_config, "use_esm_attn_map", False):
raise ValueError("The HuggingFace port of ESMFold does not support use_esm_attn_map at this time!")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = super().to_dict()
if isinstance(self.esmfold_config, EsmFoldConfig):
output["esmfold_config"] = self.esmfold_config.to_dict()
return output
@dataclass
class EsmFoldConfig:
esm_type: str = None
fp16_esm: bool = True
use_esm_attn_map: bool = False
esm_ablate_pairwise: bool = False
esm_ablate_sequence: bool = False
esm_input_dropout: float = 0
embed_aa: bool = True
bypass_lm: bool = False
lddt_head_hid_dim: int = 128
trunk: "TrunkConfig" = None
def __post_init__(self):
if self.trunk is None:
self.trunk = TrunkConfig()
elif isinstance(self.trunk, dict):
self.trunk = TrunkConfig(**self.trunk)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["trunk"] = self.trunk.to_dict()
return output
@dataclass
class TrunkConfig:
num_blocks: int = 48
sequence_state_dim: int = 1024
pairwise_state_dim: int = 128
sequence_head_width: int = 32
pairwise_head_width: int = 32
position_bins: int = 32
dropout: float = 0
layer_drop: float = 0
cpu_grad_checkpoint: bool = False
max_recycles: int = 4
chunk_size: Optional[int] = 128
structure_module: "StructureModuleConfig" = None
def __post_init__(self):
if self.structure_module is None:
self.structure_module = StructureModuleConfig()
elif isinstance(self.structure_module, dict):
self.structure_module = StructureModuleConfig(**self.structure_module)
if self.max_recycles <= 0:
raise ValueError(f"`max_recycles` should be positive, got {self.max_recycles}.")
if self.sequence_state_dim % self.sequence_state_dim != 0:
raise ValueError(
"`sequence_state_dim` should be a round multiple of `sequence_state_dim`, got"
f" {self.sequence_state_dim} and {self.sequence_state_dim}."
)
if self.pairwise_state_dim % self.pairwise_state_dim != 0:
raise ValueError(
"`pairwise_state_dim` should be a round multiple of `pairwise_state_dim`, got"
f" {self.pairwise_state_dim} and {self.pairwise_state_dim}."
)
sequence_num_heads = self.sequence_state_dim // self.sequence_head_width
pairwise_num_heads = self.pairwise_state_dim // self.pairwise_head_width
if self.sequence_state_dim != sequence_num_heads * self.sequence_head_width:
raise ValueError(
"`sequence_state_dim` should be equal to `sequence_num_heads * sequence_head_width, got"
f" {self.sequence_state_dim} != {sequence_num_heads} * {self.sequence_head_width}."
)
if self.pairwise_state_dim != pairwise_num_heads * self.pairwise_head_width:
raise ValueError(
"`pairwise_state_dim` should be equal to `pairwise_num_heads * pairwise_head_width, got"
f" {self.pairwise_state_dim} != {pairwise_num_heads} * {self.pairwise_head_width}."
)
if self.pairwise_state_dim % 2 != 0:
raise ValueError(f"`pairwise_state_dim` should be even, got {self.pairwise_state_dim}.")
if self.dropout >= 0.4:
raise ValueError(f"`dropout` should not be greater than 0.4, got {self.dropout}.")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["structure_module"] = self.structure_module.to_dict()
return output
@dataclass
class StructureModuleConfig:
"""
Args:
sequence_dim:
Single representation channel dimension
pairwise_dim:
Pair representation channel dimension
ipa_dim:
IPA hidden channel dimension
resnet_dim:
Angle resnet (Alg. 23 lines 11-14) hidden channel dimension
num_heads_ipa:
Number of IPA heads
num_qk_points:
Number of query/key points to generate during IPA
num_v_points:
Number of value points to generate during IPA
dropout_rate:
Dropout rate used throughout the layer
num_blocks:
Number of structure module blocks
num_transition_layers:
Number of layers in the single representation transition (Alg. 23 lines 8-9)
num_resnet_blocks:
Number of blocks in the angle resnet
num_angles:
Number of angles to generate in the angle resnet
trans_scale_factor:
Scale of single representation transition hidden dimension
epsilon:
Small number used in angle resnet normalization
inf:
Large number used for attention masking
"""
sequence_dim: int = 384
pairwise_dim: int = 128
ipa_dim: int = 16
resnet_dim: int = 128
num_heads_ipa: int = 12
num_qk_points: int = 4
num_v_points: int = 8
dropout_rate: float = 0.1
num_blocks: int = 8
num_transition_layers: int = 1
num_resnet_blocks: int = 2
num_angles: int = 7
trans_scale_factor: int = 10
epsilon: float = 1e-8
inf: float = 1e5
def to_dict(self):
return asdict(self)
def get_default_vocab_list():
return (
"<cls>",
"<pad>",
"<eos>",
"<unk>",
"L",
"A",
"G",
"V",
"S",
"E",
"R",
"T",
"I",
"D",
"P",
"K",
"Q",
"N",
"F",
"Y",
"M",
"H",
"W",
"C",
"X",
"B",
"U",
"Z",
"O",
".",
"-",
"<null_1>",
"<mask>",
)
| 14,558 | 39.107438 | 119 | py |
transformers | transformers-main/src/transformers/models/esm/modeling_tf_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ESM model."""
from __future__ import annotations
import os
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from tensorflow.keras.activations import gelu
from tensorflow.keras.layers import Dense, Dropout, Embedding, Layer, LayerNormalization
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
shape_list,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, stable_softmax
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/esm2_t6_8M_UR50D",
"facebook/esm2_t12_35M_UR50D",
# This is not a complete list of all ESM models!
# See all ESM models at https://huggingface.co/models?filter=esm
]
def rotate_half(x):
x1, x2 = tf.split(x, 2, axis=-1)
return tf.concat((-x2, x1), axis=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : tf.shape(x)[-2], :]
sin = sin[:, :, : tf.shape(x)[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + tf.linalg.matrix_transpose(x) # Transposes last two dimensions only
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = tf.reduce_sum(x, -1, keepdims=True)
a2 = tf.reduce_sum(x, -2, keepdims=True)
a12 = tf.reduce_sum(x, (-1, -2), keepdims=True)
avg = a1 * a2
avg = avg / a12
normalized = x - avg
return normalized
class TFRotaryEmbedding(Layer):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int, name=None):
super().__init__(name=name)
# Matt: The PyTorch version of this layer does a lot of work to cache values, but we just rely on TF compilation
# and/or XLA to sort out constants like that. It actually may not seem like this layer needs to be stateful at
# all when we benefit from TF compilation, but it does. The reason is that self.inv_freq is a buffer in the
# original implementation, but all the shared ESM checkpoints were trained with fp16 params. This means that
# the inv_freq tensor was stored as a float16, and we need to replicate those lower-precision values or our
# models give different outputs from the original.
self.dim = dim
def build(self, input_shape):
super().build(input_shape)
self.inv_freq = self.add_weight(
"inv_freq", shape=(self.dim // 2,), dtype=tf.float32, initializer=get_initializer(1.0), trainable=False
)
self.inv_freq.assign(
1.0 / (10000 ** (tf.range(start=0, limit=self.dim, delta=2, dtype=tf.float32) / self.dim))
)
def _compute_cos_sin(self, x, seq_dimension=2):
seq_len = tf.shape(x)[seq_dimension]
t = tf.range(seq_len, dtype=self.inv_freq.dtype)
freqs = tf.einsum("i, j -> ij", t, self.inv_freq) # Outer multiplication
emb = tf.concat((freqs, freqs), axis=-1)[None, None, :, :]
return tf.cos(emb), tf.sin(emb)
def call(self, q: tf.Tensor, k: tf.Tensor) -> Tuple[tf.Tensor, tf.Tensor]:
cos_emb, sin_emb = self._compute_cos_sin(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, cos_emb, sin_emb),
apply_rotary_pos_emb(k, cos_emb, sin_emb),
)
class TFEsmContactPredictionHead(Layer):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
name=None,
):
super().__init__(name=name)
self.eos_idx = eos_idx
self.in_features = in_features
self.regression = Dense(1, use_bias=bias, activation="sigmoid", name="regression")
def build(self, input_shape):
super().build(input_shape)
with tf.name_scope("regression"):
self.regression.build((None, self.in_features))
def call(self, tokens, attentions):
# remove eos token attentions
eos_mask = tf.cast(tokens != self.eos_idx, attentions.dtype)
eos_mask = tf.expand_dims(eos_mask, 1) * tf.expand_dims(eos_mask, 2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = shape_list(attentions)
attentions = tf.reshape(attentions, (batch_size, layers * heads, seqlen, seqlen))
# features: batch x channels x tokens x tokens (symmetric)
attentions = average_product_correct(symmetrize(attentions))
attentions = tf.transpose(attentions, perm=(0, 2, 3, 1))
return tf.squeeze(self.regression(attentions), 3)
class TFEsmEmbeddings(Layer):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config, name=None):
super().__init__(name=name)
self.word_embeddings = Embedding(
config.vocab_size,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="word_embeddings",
)
self.position_embeddings = Embedding(
config.max_position_embeddings,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="position_embeddings",
)
if config.emb_layer_norm_before:
self.layer_norm = LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
else:
self.layer_norm = None
# Matt: I think this line was copied incorrectly from BERT, disabling for now
# self.dropout = Dropout(config.hidden_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.position_ids = tf.range(config.max_position_embeddings)[None, :]
self.padding_idx = config.pad_token_id
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
self.config = config
def call(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = tf.where((input_ids == self.mask_token_id)[:, :, None], 0.0, embeddings)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = tf.cast(tf.reduce_sum(attention_mask, axis=-1), tf.float32)
masked_tokens = input_ids == self.mask_token_id
mask_ratio_observed = tf.math.count_nonzero(masked_tokens, dtype=tf.float32, axis=-1) / src_lengths
embeddings = embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = embeddings * tf.cast(tf.expand_dims(attention_mask, -1), embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: tf.Tensor
Returns: tf.Tensor
"""
input_shape = shape_list(inputs_embeds)[:-1]
sequence_length = input_shape[1]
position_ids = tf.range(
start=self.padding_idx + 1, limit=sequence_length + self.padding_idx + 1, dtype=tf.int64
)
return tf.broadcast_to(tf.expand_dims(position_ids, 0), input_shape)
class TFEsmSelfAttention(Layer):
def __init__(self, config, position_embedding_type=None, name=None):
super().__init__(name=name)
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = Dense(self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key")
self.value = Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = Embedding(
2 * config.max_position_embeddings - 1,
self.attention_head_size,
embeddings_initializer=get_initializer(config.initializer_range),
)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = TFRotaryEmbedding(dim=self.attention_head_size, name="rotary_embeddings")
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: tf.Tensor) -> tf.Tensor:
new_x_shape = shape_list(x)[:-1] + [self.num_attention_heads, self.attention_head_size]
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, perm=(0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = tf.concat([past_key_value[0], key_layer], axis=2)
value_layer = tf.concat([past_key_value[1], value_layer], axis=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = shape_list(hidden_states)[1]
position_ids_l = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), -1)
position_ids_r = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), 0)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = tf.cast(positional_embedding, query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = tf.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = attention_probs @ value_layer
context_layer = tf.transpose(context_layer, perm=(0, 2, 1, 3))
new_context_layer_shape = shape_list(context_layer)[:-2] + [self.all_head_size]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class TFEsmSelfOutput(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = Dropout(config.hidden_dropout_prob)
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
class TFEsmAttention(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.self = TFEsmSelfAttention(config, name="self")
self.output_layer = TFEsmSelfOutput(config, name="output")
self.pruned_heads = set()
self.LayerNorm = LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
attention_output = self.output_layer(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class TFEsmIntermediate(tf.keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size,
kernel_initializer=get_initializer(config.initializer_range),
name="dense",
)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = tf.nn.gelu(hidden_states)
return hidden_states
class TFEsmOutput(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = Dropout(config.hidden_dropout_prob)
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
class TFEsmLayer(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TFEsmAttention(config, name="attention")
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = TFEsmAttention(config)
self.intermediate = TFEsmIntermediate(config, name="intermediate")
self.output_layer = TFEsmOutput(config, name="output")
self.LayerNorm = LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
training=training,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
training=training,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layernorm_output = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(hidden_states=layernorm_output)
layer_output = self.output_layer(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + outputs # add attentions if we output them
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
class TFEsmEncoder(Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.config = config
self.layer = [TFEsmLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
self.emb_layer_norm_after = LayerNormalization(epsilon=config.layer_norm_eps, name="emb_layer_norm_after")
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
training=False,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Esm
class TFEsmPooler(Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
class TFEsmPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
ESM_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Keras [Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it as a
regular Keras model and refer to the TF/Keras documentation for all matters related to general usage and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmMainLayer(Layer):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config, add_pooling_layer=True, name=None, **kwargs):
super().__init__(name=name, **kwargs)
self.config = config
self.is_decoder = config.is_decoder
self.embeddings = TFEsmEmbeddings(config, name="embeddings")
self.encoder = TFEsmEncoder(config, name="encoder")
self.pooler = TFEsmPooler(config, name="pooler") if add_pooling_layer else None
self.contact_head = TFEsmContactPredictionHead(
in_features=self.config.num_hidden_layers * self.config.num_attention_heads, bias=True, name="contact_head"
)
def build(self, input_shape):
super().build(input_shape)
with tf.name_scope("contact_head"):
self.contact_head.build(input_shape)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value: tf.Variable):
self.embeddings.word_embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
raise NotImplementedError
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
if not self.config.is_decoder:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
if past_key_values is None:
past_key_values_length = 0
past_key_values = [None] * len(self.encoder.layer)
else:
past_key_values_length = shape_list(past_key_values[0][0])[-2]
if attention_mask is None:
attention_mask = tf.fill(dims=(batch_size, seq_length + past_key_values_length), value=1)
embedding_output = self.embeddings(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
training=training,
)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(attention_mask)
mask_seq_length = seq_length + past_key_values_length
# Copied from `modeling_tf_t5.py`
# Provided a padding mask of dimensions [batch_size, mask_seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
if self.is_decoder:
seq_ids = tf.range(mask_seq_length)
causal_mask = tf.less_equal(
tf.tile(seq_ids[None, None, :], (batch_size, mask_seq_length, 1)),
seq_ids[None, :, None],
)
causal_mask = tf.cast(causal_mask, dtype=attention_mask.dtype)
extended_attention_mask = causal_mask * attention_mask[:, None, :]
attention_mask_shape = shape_list(extended_attention_mask)
extended_attention_mask = tf.reshape(
extended_attention_mask, (attention_mask_shape[0], 1, attention_mask_shape[1], attention_mask_shape[2])
)
if past_key_values[0] is not None:
# attention_mask needs to be sliced to the shape `[batch_size, 1, from_seq_length - cached_seq_length, to_seq_length]
extended_attention_mask = extended_attention_mask[:, :, -seq_length:, :]
else:
extended_attention_mask = tf.reshape(
attention_mask, (attention_mask_shape[0], 1, 1, attention_mask_shape[1])
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype=embedding_output.dtype)
one_cst = tf.constant(1.0, dtype=embedding_output.dtype)
ten_thousand_cst = tf.constant(-10000.0, dtype=embedding_output.dtype)
extended_attention_mask = tf.multiply(tf.subtract(one_cst, extended_attention_mask), ten_thousand_cst)
# Copied from `modeling_tf_t5.py` with -1e9 -> -10000
if self.is_decoder and encoder_attention_mask is not None:
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
encoder_attention_mask = tf.cast(encoder_attention_mask, dtype=extended_attention_mask.dtype)
num_dims_encoder_attention_mask = len(shape_list(encoder_attention_mask))
if num_dims_encoder_attention_mask == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if num_dims_encoder_attention_mask == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
# T5 has a mask that can compare sequence ids, we can simulate this here with this transposition
# Cf. https://github.com/tensorflow/mesh/blob/8d2465e9bc93129b913b5ccc6a59aa97abd96ec6/mesh_tensorflow/transformer/transformer_layers.py#L270
# encoder_extended_attention_mask = tf.math.equal(encoder_extended_attention_mask,
# tf.transpose(encoder_extended_attention_mask, perm=(-1, -2)))
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
encoder_outputs = self.encoder(
hidden_states=embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(hidden_states=sequence_output) if self.pooler is not None else None
if not return_dict:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = tf.stack(attns, axis=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attention_mask = tf.cast(attention_mask, attns.dtype)
attns *= attention_mask[:, None, None, None]
attns *= attention_mask[:, None, None, :, None]
return self.contact_head(tokens, attns)
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmModel(TFEsmPreTrainedModel):
def __init__(self, config: EsmConfig, add_pooling_layer=True, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.esm = TFEsmMainLayer(config, add_pooling_layer=add_pooling_layer, name="esm")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
r"""
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
"""
outputs = self.esm(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class TFEsmForMaskedLM(TFEsmPreTrainedModel, TFMaskedLanguageModelingLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.lm_head = TFEsmLMHead(config, name="lm_head")
if config.tie_word_embeddings:
# Ensure word embeddings are built so that we actually have something to tie
with tf.name_scope(os.path.join(self._name_scope(), "esm", "embeddings", "word_embeddings")):
self.esm.embeddings.word_embeddings.build((None, None))
self.lm_head.decoder = self.esm.embeddings.word_embeddings.weights[0]
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
def get_lm_head(self):
return self.lm_head
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
masked_lm_loss = self.hf_compute_loss(labels=labels, logits=prediction_scores)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFMaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
class TFEsmLMHead(Layer):
"""ESM Head for masked language modeling."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.layer_norm = LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
if config.tie_word_embeddings:
self.decoder = None
else:
self.decoder = Dense(
config.vocab_size,
kernel_initializer=get_initializer(config.initializer_range),
name="decoder",
use_bias=False,
)
self.config = config
def build(self, input_shape):
super().build(input_shape)
# Separate bias to match the PT model and allow weight cross-loading to work
# Put it in the build so it gets the right name when adding it as a weight
self.bias = self.add_weight("bias", shape=(self.config.vocab_size,), initializer="zeros", trainable=True)
def get_bias(self):
return {"bias": self.bias}
def call(self, features):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
if self.config.tie_word_embeddings:
x = tf.matmul(x, self.decoder, transpose_b=True) + self.bias
else:
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForSequenceClassification(TFEsmPreTrainedModel, TFSequenceClassificationLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.classifier = TFEsmClassificationHead(config, name="classifier")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForTokenClassification(TFEsmPreTrainedModel, TFTokenClassificationLoss):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.dropout = Dropout(config.hidden_dropout_prob)
self.classifier = Dense(config.num_labels, name="classifier")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class TFEsmClassificationHead(Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.dropout = Dropout(config.hidden_dropout_prob)
self.out_proj = Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
activation="linear",
name="out_proj",
)
def call(self, features, training=False):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x, training=training)
x = self.dense(x)
x = self.dropout(x, training=training)
x = self.out_proj(x)
return x
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: tf.Tensor x:
Returns: tf.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = tf.cast(input_ids != padding_idx, tf.int64)
incremental_indices = (tf.cumsum(mask, axis=1) + past_key_values_length) * mask
return incremental_indices + padding_idx
| 60,870 | 43.141407 | 153 | py |
transformers | transformers-main/src/transformers/models/esm/modeling_esm.py | # coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ESM model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
ESM_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/esm2_t6_8M_UR50D",
"facebook/esm2_t12_35M_UR50D",
# This is not a complete list of all ESM models!
# See all ESM models at https://huggingface.co/models?filter=esm
]
def rotate_half(x):
x1, x2 = x.chunk(2, dim=-1)
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : x.shape[-2], :]
sin = sin[:, :, : x.shape[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def gelu(x):
"""
This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results.
"""
return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0)))
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + x.transpose(-1, -2)
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = x.sum(-1, keepdims=True)
a2 = x.sum(-2, keepdims=True)
a12 = x.sum((-1, -2), keepdims=True)
avg = a1 * a2
avg.div_(a12) # in-place to reduce memory
normalized = x - avg
return normalized
class RotaryEmbedding(torch.nn.Module):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int):
super().__init__()
# Generate and save the inverse frequency buffer (non trainable)
inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2).float() / dim))
inv_freq = inv_freq
self.register_buffer("inv_freq", inv_freq)
self._seq_len_cached = None
self._cos_cached = None
self._sin_cached = None
def _update_cos_sin_tables(self, x, seq_dimension=2):
seq_len = x.shape[seq_dimension]
# Reset the tables if the sequence length has changed,
# or if we're on a new device (possibly due to tracing for instance)
if seq_len != self._seq_len_cached or self._cos_cached.device != x.device:
self._seq_len_cached = seq_len
t = torch.arange(x.shape[seq_dimension], device=x.device).type_as(self.inv_freq)
freqs = torch.outer(t, self.inv_freq)
emb = torch.cat((freqs, freqs), dim=-1).to(x.device)
self._cos_cached = emb.cos()[None, None, :, :]
self._sin_cached = emb.sin()[None, None, :, :]
return self._cos_cached, self._sin_cached
def forward(self, q: torch.Tensor, k: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
self._cos_cached, self._sin_cached = self._update_cos_sin_tables(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, self._cos_cached, self._sin_cached),
apply_rotary_pos_emb(k, self._cos_cached, self._sin_cached),
)
class EsmContactPredictionHead(nn.Module):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
):
super().__init__()
self.in_features = in_features
self.eos_idx = eos_idx
self.regression = nn.Linear(in_features, 1, bias)
self.activation = nn.Sigmoid()
def forward(self, tokens, attentions):
# remove eos token attentions
eos_mask = tokens.ne(self.eos_idx).to(attentions)
eos_mask = eos_mask.unsqueeze(1) * eos_mask.unsqueeze(2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = attentions.size()
attentions = attentions.view(batch_size, layers * heads, seqlen, seqlen)
# features: batch x channels x tokens x tokens (symmetric)
attentions = attentions.to(
self.regression.weight.device
) # attentions always float32, may need to convert to float16
attentions = average_product_correct(symmetrize(attentions))
attentions = attentions.permute(0, 2, 3, 1)
return self.activation(self.regression(attentions).squeeze(3))
class EsmEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
if config.emb_layer_norm_before:
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
else:
self.layer_norm = None
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
def forward(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings.masked_fill_((input_ids == self.mask_token_id).unsqueeze(-1), 0.0)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = attention_mask.sum(-1)
mask_ratio_observed = (input_ids == self.mask_token_id).sum(-1).float() / src_lengths
embeddings = (embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]).to(
embeddings.dtype
)
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = (embeddings * attention_mask.unsqueeze(-1)).to(embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class EsmSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = RotaryEmbedding(dim=self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class EsmSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states += input_tensor
return hidden_states
class EsmAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = EsmSelfAttention(config)
self.output = EsmSelfOutput(config)
self.pruned_heads = set()
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class EsmIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = gelu(hidden_states)
return hidden_states
class EsmOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states += input_tensor
return hidden_states
class EsmLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = EsmAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = EsmAttention(config)
self.intermediate = EsmIntermediate(config)
self.output = EsmOutput(config)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = self.feed_forward_chunk(attention_output)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
attention_output_ln = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(attention_output_ln)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class EsmEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([EsmLayer(config) for _ in range(config.num_hidden_layers)])
self.emb_layer_norm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with `config.gradient_checkpointing=True`. Setting "
"`use_cache=False`..."
)
use_cache = False
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class EsmPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class EsmPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
_no_split_modules = ["EsmLayer", "EsmFoldTriangularSelfAttentionBlock"]
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
ESM_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class EsmModel(EsmPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
supports_gradient_checkpointing = False
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = EsmEmbeddings(config)
self.encoder = EsmEncoder(config)
self.pooler = EsmPooler(config) if add_pooling_layer else None
self.contact_head = EsmContactPredictionHead(
in_features=config.num_hidden_layers * config.num_attention_heads, bias=True
)
# Initialize weights and apply final processing
self.post_init()
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, EsmEncoder):
module.gradient_checkpointing = value
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = torch.stack(attns, dim=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(3)
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(4)
return self.contact_head(tokens, attns)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class EsmForMaskedLM(EsmPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.weight"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = EsmModel(config, add_pooling_layer=False)
self.lm_head = EsmLMHead(config)
self.init_weights()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(prediction_scores.device)
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask=attention_mask)
class EsmLMHead(nn.Module):
"""ESM Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForSequenceClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = EsmModel(config, add_pooling_layer=False)
self.classifier = EsmClassificationHead(config)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForTokenClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = EsmModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(logits.device)
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class EsmClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = torch.tanh(x)
x = self.dropout(x)
x = self.out_proj(x)
return x
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
| 55,911 | 42.715403 | 198 | py |
transformers | transformers-main/src/transformers/models/esm/__init__.py | # Copyright 2022 Facebook and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_esm": ["ESM_PRETRAINED_CONFIG_ARCHIVE_MAP", "EsmConfig"],
"tokenization_esm": ["EsmTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_esm"] = [
"ESM_PRETRAINED_MODEL_ARCHIVE_LIST",
"EsmForMaskedLM",
"EsmForSequenceClassification",
"EsmForTokenClassification",
"EsmModel",
"EsmPreTrainedModel",
]
_import_structure["modeling_esmfold"] = ["EsmForProteinFolding", "EsmFoldPreTrainedModel"]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_esm"] = [
"TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFEsmForMaskedLM",
"TFEsmForSequenceClassification",
"TFEsmForTokenClassification",
"TFEsmModel",
"TFEsmPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_esm import ESM_PRETRAINED_CONFIG_ARCHIVE_MAP, EsmConfig
from .tokenization_esm import EsmTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_esm import (
ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
EsmForMaskedLM,
EsmForSequenceClassification,
EsmForTokenClassification,
EsmModel,
EsmPreTrainedModel,
)
from .modeling_esmfold import EsmFoldPreTrainedModel, EsmForProteinFolding
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_esm import (
TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
TFEsmForMaskedLM,
TFEsmForSequenceClassification,
TFEsmForTokenClassification,
TFEsmModel,
TFEsmPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 2,978 | 30.357895 | 101 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/residue_constants.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Constants used in AlphaFold."""
import collections
import copy
import functools
from importlib import resources
from typing import Dict, List, Mapping, Sequence, Tuple
import numpy as np
# Internal import (35fd).
# Distance from one CA to next CA [trans configuration: omega = 180].
ca_ca = 3.80209737096
# Format: The list for each AA type contains chi1, chi2, chi3, chi4 in
# this order (or a relevant subset from chi1 onwards). ALA and GLY don't have
# chi angles so their chi angle lists are empty.
chi_angles_atoms: Dict[str, List[List[str]]] = {
"ALA": [],
# Chi5 in arginine is always 0 +- 5 degrees, so ignore it.
"ARG": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "NE"], ["CG", "CD", "NE", "CZ"]],
"ASN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"ASP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"CYS": [["N", "CA", "CB", "SG"]],
"GLN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLY": [],
"HIS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "ND1"]],
"ILE": [["N", "CA", "CB", "CG1"], ["CA", "CB", "CG1", "CD1"]],
"LEU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"LYS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "CE"], ["CG", "CD", "CE", "NZ"]],
"MET": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "SD"], ["CB", "CG", "SD", "CE"]],
"PHE": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"PRO": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"]],
"SER": [["N", "CA", "CB", "OG"]],
"THR": [["N", "CA", "CB", "OG1"]],
"TRP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"TYR": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"VAL": [["N", "CA", "CB", "CG1"]],
}
# If chi angles given in fixed-length array, this matrix determines how to mask
# them for each AA type. The order is as per restype_order (see below).
chi_angles_mask: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[1.0, 1.0, 1.0, 1.0], # ARG
[1.0, 1.0, 0.0, 0.0], # ASN
[1.0, 1.0, 0.0, 0.0], # ASP
[1.0, 0.0, 0.0, 0.0], # CYS
[1.0, 1.0, 1.0, 0.0], # GLN
[1.0, 1.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[1.0, 1.0, 0.0, 0.0], # HIS
[1.0, 1.0, 0.0, 0.0], # ILE
[1.0, 1.0, 0.0, 0.0], # LEU
[1.0, 1.0, 1.0, 1.0], # LYS
[1.0, 1.0, 1.0, 0.0], # MET
[1.0, 1.0, 0.0, 0.0], # PHE
[1.0, 1.0, 0.0, 0.0], # PRO
[1.0, 0.0, 0.0, 0.0], # SER
[1.0, 0.0, 0.0, 0.0], # THR
[1.0, 1.0, 0.0, 0.0], # TRP
[1.0, 1.0, 0.0, 0.0], # TYR
[1.0, 0.0, 0.0, 0.0], # VAL
]
# The following chi angles are pi periodic: they can be rotated by a multiple
# of pi without affecting the structure.
chi_pi_periodic: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[0.0, 0.0, 0.0, 0.0], # ARG
[0.0, 0.0, 0.0, 0.0], # ASN
[0.0, 1.0, 0.0, 0.0], # ASP
[0.0, 0.0, 0.0, 0.0], # CYS
[0.0, 0.0, 0.0, 0.0], # GLN
[0.0, 0.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[0.0, 0.0, 0.0, 0.0], # HIS
[0.0, 0.0, 0.0, 0.0], # ILE
[0.0, 0.0, 0.0, 0.0], # LEU
[0.0, 0.0, 0.0, 0.0], # LYS
[0.0, 0.0, 0.0, 0.0], # MET
[0.0, 1.0, 0.0, 0.0], # PHE
[0.0, 0.0, 0.0, 0.0], # PRO
[0.0, 0.0, 0.0, 0.0], # SER
[0.0, 0.0, 0.0, 0.0], # THR
[0.0, 0.0, 0.0, 0.0], # TRP
[0.0, 1.0, 0.0, 0.0], # TYR
[0.0, 0.0, 0.0, 0.0], # VAL
[0.0, 0.0, 0.0, 0.0], # UNK
]
# Atoms positions relative to the 8 rigid groups, defined by the pre-omega, phi,
# psi and chi angles:
# 0: 'backbone group',
# 1: 'pre-omega-group', (empty)
# 2: 'phi-group', (currently empty, because it defines only hydrogens)
# 3: 'psi-group',
# 4,5,6,7: 'chi1,2,3,4-group'
# The atom positions are relative to the axis-end-atom of the corresponding
# rotation axis. The x-axis is in direction of the rotation axis, and the y-axis
# is defined such that the dihedral-angle-definiting atom (the last entry in
# chi_angles_atoms above) is in the xy-plane (with a positive y-coordinate).
# format: [atomname, group_idx, rel_position]
rigid_group_atom_positions: Dict[str, List[Tuple[str, int, Tuple[float, float, float]]]] = {
"ALA": [
("N", 0, (-0.525, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.529, -0.774, -1.205)),
("O", 3, (0.627, 1.062, 0.000)),
],
"ARG": [
("N", 0, (-0.524, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.524, -0.778, -1.209)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.616, 1.390, -0.000)),
("CD", 5, (0.564, 1.414, 0.000)),
("NE", 6, (0.539, 1.357, -0.000)),
("NH1", 7, (0.206, 2.301, 0.000)),
("NH2", 7, (2.078, 0.978, -0.000)),
("CZ", 7, (0.758, 1.093, -0.000)),
],
"ASN": [
("N", 0, (-0.536, 1.357, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.531, -0.787, -1.200)),
("O", 3, (0.625, 1.062, 0.000)),
("CG", 4, (0.584, 1.399, 0.000)),
("ND2", 5, (0.593, -1.188, 0.001)),
("OD1", 5, (0.633, 1.059, 0.000)),
],
"ASP": [
("N", 0, (-0.525, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, 0.000, -0.000)),
("CB", 0, (-0.526, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.593, 1.398, -0.000)),
("OD1", 5, (0.610, 1.091, 0.000)),
("OD2", 5, (0.592, -1.101, -0.003)),
],
"CYS": [
("N", 0, (-0.522, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, 0.000)),
("CB", 0, (-0.519, -0.773, -1.212)),
("O", 3, (0.625, 1.062, -0.000)),
("SG", 4, (0.728, 1.653, 0.000)),
],
"GLN": [
("N", 0, (-0.526, 1.361, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.525, -0.779, -1.207)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.615, 1.393, 0.000)),
("CD", 5, (0.587, 1.399, -0.000)),
("NE2", 6, (0.593, -1.189, -0.001)),
("OE1", 6, (0.634, 1.060, 0.000)),
],
"GLU": [
("N", 0, (-0.528, 1.361, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.526, -0.781, -1.207)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.615, 1.392, 0.000)),
("CD", 5, (0.600, 1.397, 0.000)),
("OE1", 6, (0.607, 1.095, -0.000)),
("OE2", 6, (0.589, -1.104, -0.001)),
],
"GLY": [
("N", 0, (-0.572, 1.337, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.517, -0.000, -0.000)),
("O", 3, (0.626, 1.062, -0.000)),
],
"HIS": [
("N", 0, (-0.527, 1.360, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.525, -0.778, -1.208)),
("O", 3, (0.625, 1.063, 0.000)),
("CG", 4, (0.600, 1.370, -0.000)),
("CD2", 5, (0.889, -1.021, 0.003)),
("ND1", 5, (0.744, 1.160, -0.000)),
("CE1", 5, (2.030, 0.851, 0.002)),
("NE2", 5, (2.145, -0.466, 0.004)),
],
"ILE": [
("N", 0, (-0.493, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.536, -0.793, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.534, 1.437, -0.000)),
("CG2", 4, (0.540, -0.785, -1.199)),
("CD1", 5, (0.619, 1.391, 0.000)),
],
"LEU": [
("N", 0, (-0.520, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.522, -0.773, -1.214)),
("O", 3, (0.625, 1.063, -0.000)),
("CG", 4, (0.678, 1.371, 0.000)),
("CD1", 5, (0.530, 1.430, -0.000)),
("CD2", 5, (0.535, -0.774, 1.200)),
],
"LYS": [
("N", 0, (-0.526, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.524, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.619, 1.390, 0.000)),
("CD", 5, (0.559, 1.417, 0.000)),
("CE", 6, (0.560, 1.416, 0.000)),
("NZ", 7, (0.554, 1.387, 0.000)),
],
"MET": [
("N", 0, (-0.521, 1.364, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.210)),
("O", 3, (0.625, 1.062, -0.000)),
("CG", 4, (0.613, 1.391, -0.000)),
("SD", 5, (0.703, 1.695, 0.000)),
("CE", 6, (0.320, 1.786, -0.000)),
],
"PHE": [
("N", 0, (-0.518, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, -0.000)),
("CB", 0, (-0.525, -0.776, -1.212)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.607, 1.377, 0.000)),
("CD1", 5, (0.709, 1.195, -0.000)),
("CD2", 5, (0.706, -1.196, 0.000)),
("CE1", 5, (2.102, 1.198, -0.000)),
("CE2", 5, (2.098, -1.201, -0.000)),
("CZ", 5, (2.794, -0.003, -0.001)),
],
"PRO": [
("N", 0, (-0.566, 1.351, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, 0.000)),
("CB", 0, (-0.546, -0.611, -1.293)),
("O", 3, (0.621, 1.066, 0.000)),
("CG", 4, (0.382, 1.445, 0.0)),
# ('CD', 5, (0.427, 1.440, 0.0)),
("CD", 5, (0.477, 1.424, 0.0)), # manually made angle 2 degrees larger
],
"SER": [
("N", 0, (-0.529, 1.360, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.518, -0.777, -1.211)),
("O", 3, (0.626, 1.062, -0.000)),
("OG", 4, (0.503, 1.325, 0.000)),
],
"THR": [
("N", 0, (-0.517, 1.364, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, -0.000)),
("CB", 0, (-0.516, -0.793, -1.215)),
("O", 3, (0.626, 1.062, 0.000)),
("CG2", 4, (0.550, -0.718, -1.228)),
("OG1", 4, (0.472, 1.353, 0.000)),
],
"TRP": [
("N", 0, (-0.521, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.212)),
("O", 3, (0.627, 1.062, 0.000)),
("CG", 4, (0.609, 1.370, -0.000)),
("CD1", 5, (0.824, 1.091, 0.000)),
("CD2", 5, (0.854, -1.148, -0.005)),
("CE2", 5, (2.186, -0.678, -0.007)),
("CE3", 5, (0.622, -2.530, -0.007)),
("NE1", 5, (2.140, 0.690, -0.004)),
("CH2", 5, (3.028, -2.890, -0.013)),
("CZ2", 5, (3.283, -1.543, -0.011)),
("CZ3", 5, (1.715, -3.389, -0.011)),
],
"TYR": [
("N", 0, (-0.522, 1.362, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, -0.000, -0.000)),
("CB", 0, (-0.522, -0.776, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG", 4, (0.607, 1.382, -0.000)),
("CD1", 5, (0.716, 1.195, -0.000)),
("CD2", 5, (0.713, -1.194, -0.001)),
("CE1", 5, (2.107, 1.200, -0.002)),
("CE2", 5, (2.104, -1.201, -0.003)),
("OH", 5, (4.168, -0.002, -0.005)),
("CZ", 5, (2.791, -0.001, -0.003)),
],
"VAL": [
("N", 0, (-0.494, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.533, -0.795, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.540, 1.429, -0.000)),
("CG2", 4, (0.533, -0.776, 1.203)),
],
}
# A list of atoms (excluding hydrogen) for each AA type. PDB naming convention.
residue_atoms: Dict[str, List[str]] = {
"ALA": ["C", "CA", "CB", "N", "O"],
"ARG": ["C", "CA", "CB", "CG", "CD", "CZ", "N", "NE", "O", "NH1", "NH2"],
"ASP": ["C", "CA", "CB", "CG", "N", "O", "OD1", "OD2"],
"ASN": ["C", "CA", "CB", "CG", "N", "ND2", "O", "OD1"],
"CYS": ["C", "CA", "CB", "N", "O", "SG"],
"GLU": ["C", "CA", "CB", "CG", "CD", "N", "O", "OE1", "OE2"],
"GLN": ["C", "CA", "CB", "CG", "CD", "N", "NE2", "O", "OE1"],
"GLY": ["C", "CA", "N", "O"],
"HIS": ["C", "CA", "CB", "CG", "CD2", "CE1", "N", "ND1", "NE2", "O"],
"ILE": ["C", "CA", "CB", "CG1", "CG2", "CD1", "N", "O"],
"LEU": ["C", "CA", "CB", "CG", "CD1", "CD2", "N", "O"],
"LYS": ["C", "CA", "CB", "CG", "CD", "CE", "N", "NZ", "O"],
"MET": ["C", "CA", "CB", "CG", "CE", "N", "O", "SD"],
"PHE": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O"],
"PRO": ["C", "CA", "CB", "CG", "CD", "N", "O"],
"SER": ["C", "CA", "CB", "N", "O", "OG"],
"THR": ["C", "CA", "CB", "CG2", "N", "O", "OG1"],
"TRP": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE2", "CE3", "CZ2", "CZ3", "CH2", "N", "NE1", "O"],
"TYR": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O", "OH"],
"VAL": ["C", "CA", "CB", "CG1", "CG2", "N", "O"],
}
# Naming swaps for ambiguous atom names.
# Due to symmetries in the amino acids the naming of atoms is ambiguous in
# 4 of the 20 amino acids.
# (The LDDT paper lists 7 amino acids as ambiguous, but the naming ambiguities
# in LEU, VAL and ARG can be resolved by using the 3d constellations of
# the 'ambiguous' atoms and their neighbours)
# TODO: ^ interpret this
residue_atom_renaming_swaps: Dict[str, Dict[str, str]] = {
"ASP": {"OD1": "OD2"},
"GLU": {"OE1": "OE2"},
"PHE": {"CD1": "CD2", "CE1": "CE2"},
"TYR": {"CD1": "CD2", "CE1": "CE2"},
}
# Van der Waals radii [Angstroem] of the atoms (from Wikipedia)
van_der_waals_radius: Dict[str, float] = {
"C": 1.7,
"N": 1.55,
"O": 1.52,
"S": 1.8,
}
Bond = collections.namedtuple("Bond", ["atom1_name", "atom2_name", "length", "stddev"])
BondAngle = collections.namedtuple(
"BondAngle",
["atom1_name", "atom2_name", "atom3name", "angle_rad", "stddev"],
)
def map_structure_with_atom_order(in_list: list, first_call: bool = True) -> list:
# Maps strings in a nested list structure to their corresponding index in atom_order
if first_call:
in_list = copy.deepcopy(in_list)
for i in range(len(in_list)):
if isinstance(in_list[i], list):
in_list[i] = map_structure_with_atom_order(in_list[i], first_call=False)
elif isinstance(in_list[i], str):
in_list[i] = atom_order[in_list[i]]
else:
raise ValueError("Unexpected type when mapping nested lists!")
return in_list
@functools.lru_cache(maxsize=None)
def load_stereo_chemical_props() -> (
Tuple[
Mapping[str, List[Bond]],
Mapping[str, List[Bond]],
Mapping[str, List[BondAngle]],
]
):
"""Load stereo_chemical_props.txt into a nice structure.
Load literature values for bond lengths and bond angles and translate bond angles into the length of the opposite
edge of the triangle ("residue_virtual_bonds").
Returns:
residue_bonds: dict that maps resname --> list of Bond tuples residue_virtual_bonds: dict that maps resname -->
list of Bond tuples residue_bond_angles: dict that maps resname --> list of BondAngle tuples
"""
# TODO: this file should be downloaded in a setup script
stereo_chemical_props = resources.read_text("openfold.resources", "stereo_chemical_props.txt")
lines_iter = iter(stereo_chemical_props.splitlines())
# Load bond lengths.
residue_bonds: Dict[str, List[Bond]] = {}
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, bond_length, stddev = line.split()
atom1, atom2 = bond.split("-")
if resname not in residue_bonds:
residue_bonds[resname] = []
residue_bonds[resname].append(Bond(atom1, atom2, float(bond_length), float(stddev)))
residue_bonds["UNK"] = []
# Load bond angles.
residue_bond_angles: Dict[str, List[BondAngle]] = {}
next(lines_iter) # Skip empty line.
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, angle_degree, stddev_degree = line.split()
atom1, atom2, atom3 = bond.split("-")
if resname not in residue_bond_angles:
residue_bond_angles[resname] = []
residue_bond_angles[resname].append(
BondAngle(
atom1,
atom2,
atom3,
float(angle_degree) / 180.0 * np.pi,
float(stddev_degree) / 180.0 * np.pi,
)
)
residue_bond_angles["UNK"] = []
def make_bond_key(atom1_name: str, atom2_name: str) -> str:
"""Unique key to lookup bonds."""
return "-".join(sorted([atom1_name, atom2_name]))
# Translate bond angles into distances ("virtual bonds").
residue_virtual_bonds: Dict[str, List[Bond]] = {}
for resname, bond_angles in residue_bond_angles.items():
# Create a fast lookup dict for bond lengths.
bond_cache: Dict[str, Bond] = {}
for b in residue_bonds[resname]:
bond_cache[make_bond_key(b.atom1_name, b.atom2_name)] = b
residue_virtual_bonds[resname] = []
for ba in bond_angles:
bond1 = bond_cache[make_bond_key(ba.atom1_name, ba.atom2_name)]
bond2 = bond_cache[make_bond_key(ba.atom2_name, ba.atom3name)]
# Compute distance between atom1 and atom3 using the law of cosines
# c^2 = a^2 + b^2 - 2ab*cos(gamma).
gamma = ba.angle_rad
length = np.sqrt(bond1.length**2 + bond2.length**2 - 2 * bond1.length * bond2.length * np.cos(gamma))
# Propagation of uncertainty assuming uncorrelated errors.
dl_outer = 0.5 / length
dl_dgamma = (2 * bond1.length * bond2.length * np.sin(gamma)) * dl_outer
dl_db1 = (2 * bond1.length - 2 * bond2.length * np.cos(gamma)) * dl_outer
dl_db2 = (2 * bond2.length - 2 * bond1.length * np.cos(gamma)) * dl_outer
stddev = np.sqrt(
(dl_dgamma * ba.stddev) ** 2 + (dl_db1 * bond1.stddev) ** 2 + (dl_db2 * bond2.stddev) ** 2
)
residue_virtual_bonds[resname].append(Bond(ba.atom1_name, ba.atom3name, length, stddev))
return (residue_bonds, residue_virtual_bonds, residue_bond_angles)
# Between-residue bond lengths for general bonds (first element) and for Proline
# (second element).
between_res_bond_length_c_n: Tuple[float, float] = (1.329, 1.341)
between_res_bond_length_stddev_c_n: Tuple[float, float] = (0.014, 0.016)
# Between-residue cos_angles.
between_res_cos_angles_c_n_ca: Tuple[float, float] = (-0.5203, 0.0353) # degrees: 121.352 +- 2.315
between_res_cos_angles_ca_c_n: Tuple[float, float] = (-0.4473, 0.0311) # degrees: 116.568 +- 1.995
# This mapping is used when we need to store atom data in a format that requires
# fixed atom data size for every residue (e.g. a numpy array).
atom_types: List[str] = [
"N",
"CA",
"C",
"CB",
"O",
"CG",
"CG1",
"CG2",
"OG",
"OG1",
"SG",
"CD",
"CD1",
"CD2",
"ND1",
"ND2",
"OD1",
"OD2",
"SD",
"CE",
"CE1",
"CE2",
"CE3",
"NE",
"NE1",
"NE2",
"OE1",
"OE2",
"CH2",
"NH1",
"NH2",
"OH",
"CZ",
"CZ2",
"CZ3",
"NZ",
"OXT",
]
atom_order: Dict[str, int] = {atom_type: i for i, atom_type in enumerate(atom_types)}
atom_type_num = len(atom_types) # := 37.
# A compact atom encoding with 14 columns
# pylint: disable=line-too-long
# pylint: disable=bad-whitespace
restype_name_to_atom14_names: Dict[str, List[str]] = {
"ALA": ["N", "CA", "C", "O", "CB", "", "", "", "", "", "", "", "", ""],
"ARG": ["N", "CA", "C", "O", "CB", "CG", "CD", "NE", "CZ", "NH1", "NH2", "", "", ""],
"ASN": ["N", "CA", "C", "O", "CB", "CG", "OD1", "ND2", "", "", "", "", "", ""],
"ASP": ["N", "CA", "C", "O", "CB", "CG", "OD1", "OD2", "", "", "", "", "", ""],
"CYS": ["N", "CA", "C", "O", "CB", "SG", "", "", "", "", "", "", "", ""],
"GLN": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "NE2", "", "", "", "", ""],
"GLU": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "OE2", "", "", "", "", ""],
"GLY": ["N", "CA", "C", "O", "", "", "", "", "", "", "", "", "", ""],
"HIS": ["N", "CA", "C", "O", "CB", "CG", "ND1", "CD2", "CE1", "NE2", "", "", "", ""],
"ILE": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "CD1", "", "", "", "", "", ""],
"LEU": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "", "", "", "", "", ""],
"LYS": ["N", "CA", "C", "O", "CB", "CG", "CD", "CE", "NZ", "", "", "", "", ""],
"MET": ["N", "CA", "C", "O", "CB", "CG", "SD", "CE", "", "", "", "", "", ""],
"PHE": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "", "", ""],
"PRO": ["N", "CA", "C", "O", "CB", "CG", "CD", "", "", "", "", "", "", ""],
"SER": ["N", "CA", "C", "O", "CB", "OG", "", "", "", "", "", "", "", ""],
"THR": ["N", "CA", "C", "O", "CB", "OG1", "CG2", "", "", "", "", "", "", ""],
"TRP": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "NE1", "CE2", "CE3", "CZ2", "CZ3", "CH2"],
"TYR": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "OH", "", ""],
"VAL": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "", "", "", "", "", "", ""],
"UNK": ["", "", "", "", "", "", "", "", "", "", "", "", "", ""],
}
# pylint: enable=line-too-long
# pylint: enable=bad-whitespace
# This is the standard residue order when coding AA type as a number.
# Reproduce it by taking 3-letter AA codes and sorting them alphabetically.
restypes: List[str] = [
"A",
"R",
"N",
"D",
"C",
"Q",
"E",
"G",
"H",
"I",
"L",
"K",
"M",
"F",
"P",
"S",
"T",
"W",
"Y",
"V",
]
restype_order: Dict[str, int] = {restype: i for i, restype in enumerate(restypes)}
restype_num = len(restypes) # := 20.
unk_restype_index = restype_num # Catch-all index for unknown restypes.
restypes_with_x: List[str] = restypes + ["X"]
restype_order_with_x: Dict[str, int] = {restype: i for i, restype in enumerate(restypes_with_x)}
def sequence_to_onehot(sequence: str, mapping: Mapping[str, int], map_unknown_to_x: bool = False) -> np.ndarray:
"""Maps the given sequence into a one-hot encoded matrix.
Args:
sequence: An amino acid sequence.
mapping: A dictionary mapping amino acids to integers.
map_unknown_to_x: If True, any amino acid that is not in the mapping will be
mapped to the unknown amino acid 'X'. If the mapping doesn't contain amino acid 'X', an error will be thrown.
If False, any amino acid not in the mapping will throw an error.
Returns:
A numpy array of shape (seq_len, num_unique_aas) with one-hot encoding of the sequence.
Raises:
ValueError: If the mapping doesn't contain values from 0 to
num_unique_aas - 1 without any gaps.
"""
num_entries = max(mapping.values()) + 1
if sorted(set(mapping.values())) != list(range(num_entries)):
raise ValueError(
"The mapping must have values from 0 to num_unique_aas-1 without any gaps. Got: %s"
% sorted(mapping.values())
)
one_hot_arr = np.zeros((len(sequence), num_entries), dtype=np.int32)
for aa_index, aa_type in enumerate(sequence):
if map_unknown_to_x:
if aa_type.isalpha() and aa_type.isupper():
aa_id = mapping.get(aa_type, mapping["X"])
else:
raise ValueError(f"Invalid character in the sequence: {aa_type}")
else:
aa_id = mapping[aa_type]
one_hot_arr[aa_index, aa_id] = 1
return one_hot_arr
restype_1to3: Dict[str, str] = {
"A": "ALA",
"R": "ARG",
"N": "ASN",
"D": "ASP",
"C": "CYS",
"Q": "GLN",
"E": "GLU",
"G": "GLY",
"H": "HIS",
"I": "ILE",
"L": "LEU",
"K": "LYS",
"M": "MET",
"F": "PHE",
"P": "PRO",
"S": "SER",
"T": "THR",
"W": "TRP",
"Y": "TYR",
"V": "VAL",
}
# NB: restype_3to1 differs from Bio.PDB.protein_letters_3to1 by being a simple
# 1-to-1 mapping of 3 letter names to one letter names. The latter contains
# many more, and less common, three letter names as keys and maps many of these
# to the same one letter name (including 'X' and 'U' which we don't use here).
restype_3to1: Dict[str, str] = {v: k for k, v in restype_1to3.items()}
# Define a restype name for all unknown residues.
unk_restype = "UNK"
resnames: List[str] = [restype_1to3[r] for r in restypes] + [unk_restype]
resname_to_idx: Dict[str, int] = {resname: i for i, resname in enumerate(resnames)}
# The mapping here uses hhblits convention, so that B is mapped to D, J and O
# are mapped to X, U is mapped to C, and Z is mapped to E. Other than that the
# remaining 20 amino acids are kept in alphabetical order.
# There are 2 non-amino acid codes, X (representing any amino acid) and
# "-" representing a missing amino acid in an alignment. The id for these
# codes is put at the end (20 and 21) so that they can easily be ignored if
# desired.
HHBLITS_AA_TO_ID: Dict[str, int] = {
"A": 0,
"B": 2,
"C": 1,
"D": 2,
"E": 3,
"F": 4,
"G": 5,
"H": 6,
"I": 7,
"J": 20,
"K": 8,
"L": 9,
"M": 10,
"N": 11,
"O": 20,
"P": 12,
"Q": 13,
"R": 14,
"S": 15,
"T": 16,
"U": 1,
"V": 17,
"W": 18,
"X": 20,
"Y": 19,
"Z": 3,
"-": 21,
}
# Partial inversion of HHBLITS_AA_TO_ID.
ID_TO_HHBLITS_AA: Dict[int, str] = {
0: "A",
1: "C", # Also U.
2: "D", # Also B.
3: "E", # Also Z.
4: "F",
5: "G",
6: "H",
7: "I",
8: "K",
9: "L",
10: "M",
11: "N",
12: "P",
13: "Q",
14: "R",
15: "S",
16: "T",
17: "V",
18: "W",
19: "Y",
20: "X", # Includes J and O.
21: "-",
}
restypes_with_x_and_gap: List[str] = restypes + ["X", "-"]
MAP_HHBLITS_AATYPE_TO_OUR_AATYPE: Tuple[int, ...] = tuple(
restypes_with_x_and_gap.index(ID_TO_HHBLITS_AA[i]) for i in range(len(restypes_with_x_and_gap))
)
def _make_standard_atom_mask() -> np.ndarray:
"""Returns [num_res_types, num_atom_types] mask array."""
# +1 to account for unknown (all 0s).
mask = np.zeros([restype_num + 1, atom_type_num], dtype=np.int32)
for restype, restype_letter in enumerate(restypes):
restype_name = restype_1to3[restype_letter]
atom_names = residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = atom_order[atom_name]
mask[restype, atom_type] = 1
return mask
STANDARD_ATOM_MASK = _make_standard_atom_mask()
# A one hot representation for the first and second atoms defining the axis
# of rotation for each chi-angle in each residue.
def chi_angle_atom(atom_index: int) -> np.ndarray:
"""Define chi-angle rigid groups via one-hot representations."""
chi_angles_index = {}
one_hots = []
for k, v in chi_angles_atoms.items():
indices = [atom_types.index(s[atom_index]) for s in v]
indices.extend([-1] * (4 - len(indices)))
chi_angles_index[k] = indices
for r in restypes:
res3 = restype_1to3[r]
one_hot = np.eye(atom_type_num)[chi_angles_index[res3]]
one_hots.append(one_hot)
one_hots.append(np.zeros([4, atom_type_num])) # Add zeros for residue `X`.
one_hot = np.stack(one_hots, axis=0)
one_hot = np.transpose(one_hot, [0, 2, 1])
return one_hot
chi_atom_1_one_hot = chi_angle_atom(1)
chi_atom_2_one_hot = chi_angle_atom(2)
# An array like chi_angles_atoms but using indices rather than names.
chi_angles_atom_indices_list: List[List[List[str]]] = [chi_angles_atoms[restype_1to3[r]] for r in restypes]
chi_angles_atom_indices_ours: list = map_structure_with_atom_order(chi_angles_atom_indices_list)
chi_angles_atom_indices = np.array(
[chi_atoms + ([[0, 0, 0, 0]] * (4 - len(chi_atoms))) for chi_atoms in chi_angles_atom_indices_list]
)
# Mapping from (res_name, atom_name) pairs to the atom's chi group index
# and atom index within that group.
chi_groups_for_atom: Dict[Tuple[str, str], List[Tuple[int, int]]] = collections.defaultdict(list)
for res_name, chi_angle_atoms_for_res in chi_angles_atoms.items():
for chi_group_i, chi_group in enumerate(chi_angle_atoms_for_res):
for atom_i, atom in enumerate(chi_group):
chi_groups_for_atom[(res_name, atom)].append((chi_group_i, atom_i))
chi_groups_for_atom = dict(chi_groups_for_atom)
def _make_rigid_transformation_4x4(ex: np.ndarray, ey: np.ndarray, translation: np.ndarray) -> np.ndarray:
"""Create a rigid 4x4 transformation matrix from two axes and transl."""
# Normalize ex.
ex_normalized = ex / np.linalg.norm(ex)
# make ey perpendicular to ex
ey_normalized = ey - np.dot(ey, ex_normalized) * ex_normalized
ey_normalized /= np.linalg.norm(ey_normalized)
# compute ez as cross product
eznorm = np.cross(ex_normalized, ey_normalized)
m = np.stack([ex_normalized, ey_normalized, eznorm, translation]).transpose()
m = np.concatenate([m, [[0.0, 0.0, 0.0, 1.0]]], axis=0)
return m
# create an array with (restype, atomtype) --> rigid_group_idx
# and an array with (restype, atomtype, coord) for the atom positions
# and compute affine transformation matrices (4,4) from one rigid group to the
# previous group
restype_atom37_to_rigid_group = np.zeros([21, 37], dtype=int)
restype_atom37_mask = np.zeros([21, 37], dtype=np.float32)
restype_atom37_rigid_group_positions = np.zeros([21, 37, 3], dtype=np.float32)
restype_atom14_to_rigid_group = np.zeros([21, 14], dtype=int)
restype_atom14_mask = np.zeros([21, 14], dtype=np.float32)
restype_atom14_rigid_group_positions = np.zeros([21, 14, 3], dtype=np.float32)
restype_rigid_group_default_frame = np.zeros([21, 8, 4, 4], dtype=np.float32)
def _make_rigid_group_constants() -> None:
"""Fill the arrays above."""
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
for atomname, group_idx, atom_position in rigid_group_atom_positions[resname]:
atomtype = atom_order[atomname]
restype_atom37_to_rigid_group[restype, atomtype] = group_idx
restype_atom37_mask[restype, atomtype] = 1
restype_atom37_rigid_group_positions[restype, atomtype, :] = atom_position
atom14idx = restype_name_to_atom14_names[resname].index(atomname)
restype_atom14_to_rigid_group[restype, atom14idx] = group_idx
restype_atom14_mask[restype, atom14idx] = 1
restype_atom14_rigid_group_positions[restype, atom14idx, :] = atom_position
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_positions: Dict[str, np.ndarray] = {
name: np.array(pos) for name, _, pos in rigid_group_atom_positions[resname]
}
# backbone to backbone is the identity transform
restype_rigid_group_default_frame[restype, 0, :, :] = np.eye(4)
# pre-omega-frame to backbone (currently dummy identity matrix)
restype_rigid_group_default_frame[restype, 1, :, :] = np.eye(4)
# phi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["N"] - atom_positions["CA"],
ey=np.array([1.0, 0.0, 0.0]),
translation=atom_positions["N"],
)
restype_rigid_group_default_frame[restype, 2, :, :] = mat
# psi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["C"] - atom_positions["CA"],
ey=atom_positions["CA"] - atom_positions["N"],
translation=atom_positions["C"],
)
restype_rigid_group_default_frame[restype, 3, :, :] = mat
# chi1-frame to backbone
if chi_angles_mask[restype][0]:
base_atom_names = chi_angles_atoms[resname][0]
base_atom_positions = [atom_positions[name] for name in base_atom_names]
mat = _make_rigid_transformation_4x4(
ex=base_atom_positions[2] - base_atom_positions[1],
ey=base_atom_positions[0] - base_atom_positions[1],
translation=base_atom_positions[2],
)
restype_rigid_group_default_frame[restype, 4, :, :] = mat
# chi2-frame to chi1-frame
# chi3-frame to chi2-frame
# chi4-frame to chi3-frame
# luckily all rotation axes for the next frame start at (0,0,0) of the
# previous frame
for chi_idx in range(1, 4):
if chi_angles_mask[restype][chi_idx]:
axis_end_atom_name = chi_angles_atoms[resname][chi_idx][2]
axis_end_atom_position = atom_positions[axis_end_atom_name]
mat = _make_rigid_transformation_4x4(
ex=axis_end_atom_position,
ey=np.array([-1.0, 0.0, 0.0]),
translation=axis_end_atom_position,
)
restype_rigid_group_default_frame[restype, 4 + chi_idx, :, :] = mat
_make_rigid_group_constants()
def make_atom14_dists_bounds(
overlap_tolerance: float = 1.5,
bond_length_tolerance_factor: int = 15,
) -> Dict[str, np.ndarray]:
"""compute upper and lower bounds for bonds to assess violations."""
restype_atom14_bond_lower_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_upper_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_stddev = np.zeros([21, 14, 14], np.float32)
residue_bonds, residue_virtual_bonds, _ = load_stereo_chemical_props()
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_list = restype_name_to_atom14_names[resname]
# create lower and upper bounds for clashes
for atom1_idx, atom1_name in enumerate(atom_list):
if not atom1_name:
continue
atom1_radius = van_der_waals_radius[atom1_name[0]]
for atom2_idx, atom2_name in enumerate(atom_list):
if (not atom2_name) or atom1_idx == atom2_idx:
continue
atom2_radius = van_der_waals_radius[atom2_name[0]]
lower = atom1_radius + atom2_radius - overlap_tolerance
upper = 1e10
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
# overwrite lower and upper bounds for bonds and angles
for b in residue_bonds[resname] + residue_virtual_bonds[resname]:
atom1_idx = atom_list.index(b.atom1_name)
atom2_idx = atom_list.index(b.atom2_name)
lower = b.length - bond_length_tolerance_factor * b.stddev
upper = b.length + bond_length_tolerance_factor * b.stddev
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
restype_atom14_bond_stddev[restype, atom1_idx, atom2_idx] = b.stddev
restype_atom14_bond_stddev[restype, atom2_idx, atom1_idx] = b.stddev
return {
"lower_bound": restype_atom14_bond_lower_bound, # shape (21,14,14)
"upper_bound": restype_atom14_bond_upper_bound, # shape (21,14,14)
"stddev": restype_atom14_bond_stddev, # shape (21,14,14)
}
restype_atom14_ambiguous_atoms = np.zeros((21, 14), dtype=np.float32)
restype_atom14_ambiguous_atoms_swap_idx: np.ndarray = np.tile(np.arange(14, dtype=int), (21, 1))
def _make_atom14_ambiguity_feats() -> None:
for res, pairs in residue_atom_renaming_swaps.items():
res_idx = restype_order[restype_3to1[res]]
for atom1, atom2 in pairs.items():
atom1_idx = restype_name_to_atom14_names[res].index(atom1)
atom2_idx = restype_name_to_atom14_names[res].index(atom2)
restype_atom14_ambiguous_atoms[res_idx, atom1_idx] = 1
restype_atom14_ambiguous_atoms[res_idx, atom2_idx] = 1
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom1_idx] = atom2_idx
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom2_idx] = atom1_idx
_make_atom14_ambiguity_feats()
def aatype_to_str_sequence(aatype: Sequence[int]) -> str:
return "".join([restypes_with_x[aatype[i]] for i in range(len(aatype))])
| 37,993 | 37.611789 | 117 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/tensor_utils.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from functools import partial
from typing import Any, Callable, Dict, List, Type, TypeVar, Union, overload
import torch
import torch.nn as nn
import torch.types
def add(m1: torch.Tensor, m2: torch.Tensor, inplace: bool) -> torch.Tensor:
# The first operation in a checkpoint can't be in-place, but it's
# nice to have in-place addition during inference. Thus...
if not inplace:
m1 = m1 + m2
else:
m1 += m2
return m1
def permute_final_dims(tensor: torch.Tensor, inds: List[int]) -> torch.Tensor:
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def flatten_final_dims(t: torch.Tensor, no_dims: int) -> torch.Tensor:
return t.reshape(t.shape[:-no_dims] + (-1,))
def masked_mean(mask: torch.Tensor, value: torch.Tensor, dim: int, eps: float = 1e-4) -> torch.Tensor:
mask = mask.expand(*value.shape)
return torch.sum(mask * value, dim=dim) / (eps + torch.sum(mask, dim=dim))
def pts_to_distogram(
pts: torch.Tensor, min_bin: torch.types.Number = 2.3125, max_bin: torch.types.Number = 21.6875, no_bins: int = 64
) -> torch.Tensor:
boundaries = torch.linspace(min_bin, max_bin, no_bins - 1, device=pts.device)
dists = torch.sqrt(torch.sum((pts.unsqueeze(-2) - pts.unsqueeze(-3)) ** 2, dim=-1))
return torch.bucketize(dists, boundaries)
def dict_multimap(fn: Callable[[list], Any], dicts: List[dict]) -> dict:
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def one_hot(x: torch.Tensor, v_bins: torch.Tensor) -> torch.Tensor:
reshaped_bins = v_bins.view(((1,) * len(x.shape)) + (len(v_bins),))
diffs = x[..., None] - reshaped_bins
am = torch.argmin(torch.abs(diffs), dim=-1)
return nn.functional.one_hot(am, num_classes=len(v_bins)).float()
def batched_gather(data: torch.Tensor, inds: torch.Tensor, dim: int = 0, no_batch_dims: int = 0) -> torch.Tensor:
ranges: List[Union[slice, torch.Tensor]] = []
for i, s in enumerate(data.shape[:no_batch_dims]):
r = torch.arange(s)
r = r.view(*(*((1,) * i), -1, *((1,) * (len(inds.shape) - i - 1))))
ranges.append(r)
remaining_dims: List[Union[slice, torch.Tensor]] = [slice(None) for _ in range(len(data.shape) - no_batch_dims)]
remaining_dims[dim - no_batch_dims if dim >= 0 else dim] = inds
ranges.extend(remaining_dims)
# Matt note: Editing this to get around the behaviour of using a list as an array index changing
# in recent Numpy versions
return data[tuple(ranges)]
T = TypeVar("T")
# With tree_map, a poor man's JAX tree_map
def dict_map(
fn: Callable[[T], Any], dic: Dict[Any, Union[dict, list, tuple, T]], leaf_type: Type[T]
) -> Dict[Any, Union[dict, list, tuple, Any]]:
new_dict: Dict[Any, Union[dict, list, tuple, Any]] = {}
for k, v in dic.items():
if isinstance(v, dict):
new_dict[k] = dict_map(fn, v, leaf_type)
else:
new_dict[k] = tree_map(fn, v, leaf_type)
return new_dict
@overload
def tree_map(fn: Callable[[T], Any], tree: T, leaf_type: Type[T]) -> Any:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: dict, leaf_type: Type[T]) -> dict:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: list, leaf_type: Type[T]) -> list:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: tuple, leaf_type: Type[T]) -> tuple:
...
def tree_map(fn, tree, leaf_type):
if isinstance(tree, dict):
return dict_map(fn, tree, leaf_type)
elif isinstance(tree, list):
return [tree_map(fn, x, leaf_type) for x in tree]
elif isinstance(tree, tuple):
return tuple(tree_map(fn, x, leaf_type) for x in tree)
elif isinstance(tree, leaf_type):
return fn(tree)
else:
print(type(tree))
raise ValueError("Not supported")
tensor_tree_map = partial(tree_map, leaf_type=torch.Tensor)
| 4,798 | 32.096552 | 117 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/feats.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Tuple, overload
import torch
import torch.types
from torch import nn
from . import residue_constants as rc
from .rigid_utils import Rigid, Rotation
from .tensor_utils import batched_gather
@overload
def pseudo_beta_fn(aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: None) -> torch.Tensor:
...
@overload
def pseudo_beta_fn(
aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: torch.Tensor
) -> Tuple[torch.Tensor, torch.Tensor]:
...
def pseudo_beta_fn(aatype, all_atom_positions, all_atom_masks):
is_gly = aatype == rc.restype_order["G"]
ca_idx = rc.atom_order["CA"]
cb_idx = rc.atom_order["CB"]
pseudo_beta = torch.where(
is_gly[..., None].expand(*((-1,) * len(is_gly.shape)), 3),
all_atom_positions[..., ca_idx, :],
all_atom_positions[..., cb_idx, :],
)
if all_atom_masks is not None:
pseudo_beta_mask = torch.where(
is_gly,
all_atom_masks[..., ca_idx],
all_atom_masks[..., cb_idx],
)
return pseudo_beta, pseudo_beta_mask
else:
return pseudo_beta
def atom14_to_atom37(atom14: torch.Tensor, batch: Dict[str, torch.Tensor]) -> torch.Tensor:
atom37_data = batched_gather(
atom14,
batch["residx_atom37_to_atom14"],
dim=-2,
no_batch_dims=len(atom14.shape[:-2]),
)
atom37_data = atom37_data * batch["atom37_atom_exists"][..., None]
return atom37_data
def build_template_angle_feat(template_feats: Dict[str, torch.Tensor]) -> torch.Tensor:
template_aatype = template_feats["template_aatype"]
torsion_angles_sin_cos = template_feats["template_torsion_angles_sin_cos"]
alt_torsion_angles_sin_cos = template_feats["template_alt_torsion_angles_sin_cos"]
torsion_angles_mask = template_feats["template_torsion_angles_mask"]
template_angle_feat = torch.cat(
[
nn.functional.one_hot(template_aatype, 22),
torsion_angles_sin_cos.reshape(*torsion_angles_sin_cos.shape[:-2], 14),
alt_torsion_angles_sin_cos.reshape(*alt_torsion_angles_sin_cos.shape[:-2], 14),
torsion_angles_mask,
],
dim=-1,
)
return template_angle_feat
def build_template_pair_feat(
batch: Dict[str, torch.Tensor],
min_bin: torch.types.Number,
max_bin: torch.types.Number,
no_bins: int,
use_unit_vector: bool = False,
eps: float = 1e-20,
inf: float = 1e8,
) -> torch.Tensor:
template_mask = batch["template_pseudo_beta_mask"]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
# Compute distogram (this seems to differ slightly from Alg. 5)
tpb = batch["template_pseudo_beta"]
dgram = torch.sum((tpb[..., None, :] - tpb[..., None, :, :]) ** 2, dim=-1, keepdim=True)
lower = torch.linspace(min_bin, max_bin, no_bins, device=tpb.device) ** 2
upper = torch.cat([lower[1:], lower.new_tensor([inf])], dim=-1)
dgram = ((dgram > lower) * (dgram < upper)).type(dgram.dtype)
to_concat = [dgram, template_mask_2d[..., None]]
aatype_one_hot: torch.LongTensor = nn.functional.one_hot(
batch["template_aatype"],
rc.restype_num + 2,
)
n_res = batch["template_aatype"].shape[-1]
to_concat.append(aatype_one_hot[..., None, :, :].expand(*aatype_one_hot.shape[:-2], n_res, -1, -1))
to_concat.append(aatype_one_hot[..., None, :].expand(*aatype_one_hot.shape[:-2], -1, n_res, -1))
n, ca, c = [rc.atom_order[a] for a in ["N", "CA", "C"]]
rigids = Rigid.make_transform_from_reference(
n_xyz=batch["template_all_atom_positions"][..., n, :],
ca_xyz=batch["template_all_atom_positions"][..., ca, :],
c_xyz=batch["template_all_atom_positions"][..., c, :],
eps=eps,
)
points = rigids.get_trans()[..., None, :, :]
rigid_vec = rigids[..., None].invert_apply(points)
inv_distance_scalar = torch.rsqrt(eps + torch.sum(rigid_vec**2, dim=-1))
t_aa_masks = batch["template_all_atom_mask"]
template_mask = t_aa_masks[..., n] * t_aa_masks[..., ca] * t_aa_masks[..., c]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
inv_distance_scalar = inv_distance_scalar * template_mask_2d
unit_vector = rigid_vec * inv_distance_scalar[..., None]
if not use_unit_vector:
unit_vector = unit_vector * 0.0
to_concat.extend(torch.unbind(unit_vector[..., None, :], dim=-1))
to_concat.append(template_mask_2d[..., None])
act = torch.cat(to_concat, dim=-1)
act = act * template_mask_2d[..., None]
return act
def build_extra_msa_feat(batch: Dict[str, torch.Tensor]) -> torch.Tensor:
msa_1hot: torch.LongTensor = nn.functional.one_hot(batch["extra_msa"], 23)
msa_feat = [
msa_1hot,
batch["extra_has_deletion"].unsqueeze(-1),
batch["extra_deletion_value"].unsqueeze(-1),
]
return torch.cat(msa_feat, dim=-1)
def torsion_angles_to_frames(
r: Rigid,
alpha: torch.Tensor,
aatype: torch.Tensor,
rrgdf: torch.Tensor,
) -> Rigid:
# [*, N, 8, 4, 4]
default_4x4 = rrgdf[aatype, ...]
# [*, N, 8] transformations, i.e.
# One [*, N, 8, 3, 3] rotation matrix and
# One [*, N, 8, 3] translation matrix
default_r = r.from_tensor_4x4(default_4x4)
bb_rot = alpha.new_zeros((*((1,) * len(alpha.shape[:-1])), 2))
bb_rot[..., 1] = 1
# [*, N, 8, 2]
alpha = torch.cat([bb_rot.expand(*alpha.shape[:-2], -1, -1), alpha], dim=-2)
# [*, N, 8, 3, 3]
# Produces rotation matrices of the form:
# [
# [1, 0 , 0 ],
# [0, a_2,-a_1],
# [0, a_1, a_2]
# ]
# This follows the original code rather than the supplement, which uses
# different indices.
all_rots = alpha.new_zeros(default_r.get_rots().get_rot_mats().shape)
all_rots[..., 0, 0] = 1
all_rots[..., 1, 1] = alpha[..., 1]
all_rots[..., 1, 2] = -alpha[..., 0]
all_rots[..., 2, 1:] = alpha
all_frames = default_r.compose(Rigid(Rotation(rot_mats=all_rots), None))
chi2_frame_to_frame = all_frames[..., 5]
chi3_frame_to_frame = all_frames[..., 6]
chi4_frame_to_frame = all_frames[..., 7]
chi1_frame_to_bb = all_frames[..., 4]
chi2_frame_to_bb = chi1_frame_to_bb.compose(chi2_frame_to_frame)
chi3_frame_to_bb = chi2_frame_to_bb.compose(chi3_frame_to_frame)
chi4_frame_to_bb = chi3_frame_to_bb.compose(chi4_frame_to_frame)
all_frames_to_bb = Rigid.cat(
[
all_frames[..., :5],
chi2_frame_to_bb.unsqueeze(-1),
chi3_frame_to_bb.unsqueeze(-1),
chi4_frame_to_bb.unsqueeze(-1),
],
dim=-1,
)
all_frames_to_global = r[..., None].compose(all_frames_to_bb)
return all_frames_to_global
def frames_and_literature_positions_to_atom14_pos(
r: Rigid,
aatype: torch.Tensor,
default_frames: torch.Tensor,
group_idx: torch.Tensor,
atom_mask: torch.Tensor,
lit_positions: torch.Tensor,
) -> torch.Tensor:
# [*, N, 14]
group_mask = group_idx[aatype, ...]
# [*, N, 14, 8]
group_mask_one_hot: torch.LongTensor = nn.functional.one_hot(
group_mask,
num_classes=default_frames.shape[-3],
)
# [*, N, 14, 8]
t_atoms_to_global = r[..., None, :] * group_mask_one_hot
# [*, N, 14]
t_atoms_to_global = t_atoms_to_global.map_tensor_fn(lambda x: torch.sum(x, dim=-1))
# [*, N, 14, 1]
atom_mask = atom_mask[aatype, ...].unsqueeze(-1)
# [*, N, 14, 3]
lit_positions = lit_positions[aatype, ...]
pred_positions = t_atoms_to_global.apply(lit_positions)
pred_positions = pred_positions * atom_mask
return pred_positions
| 8,376 | 31.722656 | 113 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/loss.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Optional, Tuple
import torch
def _calculate_bin_centers(boundaries: torch.Tensor) -> torch.Tensor:
step = boundaries[1] - boundaries[0]
bin_centers = boundaries + step / 2
bin_centers = torch.cat([bin_centers, (bin_centers[-1] + step).unsqueeze(-1)], dim=0)
return bin_centers
def _calculate_expected_aligned_error(
alignment_confidence_breaks: torch.Tensor,
aligned_distance_error_probs: torch.Tensor,
) -> Tuple[torch.Tensor, torch.Tensor]:
bin_centers = _calculate_bin_centers(alignment_confidence_breaks)
return (
torch.sum(aligned_distance_error_probs * bin_centers, dim=-1),
bin_centers[-1],
)
def compute_predicted_aligned_error(
logits: torch.Tensor,
max_bin: int = 31,
no_bins: int = 64,
**kwargs,
) -> Dict[str, torch.Tensor]:
"""Computes aligned confidence metrics from logits.
Args:
logits: [*, num_res, num_res, num_bins] the logits output from
PredictedAlignedErrorHead.
max_bin: Maximum bin value
no_bins: Number of bins
Returns:
aligned_confidence_probs: [*, num_res, num_res, num_bins] the predicted
aligned error probabilities over bins for each residue pair.
predicted_aligned_error: [*, num_res, num_res] the expected aligned distance
error for each pair of residues.
max_predicted_aligned_error: [*] the maximum predicted error possible.
"""
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
aligned_confidence_probs = torch.nn.functional.softmax(logits, dim=-1)
predicted_aligned_error, max_predicted_aligned_error = _calculate_expected_aligned_error(
alignment_confidence_breaks=boundaries,
aligned_distance_error_probs=aligned_confidence_probs,
)
return {
"aligned_confidence_probs": aligned_confidence_probs,
"predicted_aligned_error": predicted_aligned_error,
"max_predicted_aligned_error": max_predicted_aligned_error,
}
def compute_tm(
logits: torch.Tensor,
residue_weights: Optional[torch.Tensor] = None,
max_bin: int = 31,
no_bins: int = 64,
eps: float = 1e-8,
**kwargs,
) -> torch.Tensor:
if residue_weights is None:
residue_weights = logits.new_ones(logits.shape[-2])
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
bin_centers = _calculate_bin_centers(boundaries)
torch.sum(residue_weights)
n = logits.shape[-2]
clipped_n = max(n, 19)
d0 = 1.24 * (clipped_n - 15) ** (1.0 / 3) - 1.8
probs = torch.nn.functional.softmax(logits, dim=-1)
tm_per_bin = 1.0 / (1 + (bin_centers**2) / (d0**2))
predicted_tm_term = torch.sum(probs * tm_per_bin, dim=-1)
normed_residue_mask = residue_weights / (eps + residue_weights.sum())
per_alignment = torch.sum(predicted_tm_term * normed_residue_mask, dim=-1)
weighted = per_alignment * residue_weights
argmax = (weighted == torch.max(weighted)).nonzero()[0]
return per_alignment[tuple(argmax)]
| 3,705 | 33.962264 | 93 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/rigid_utils.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
from functools import lru_cache
from typing import Any, Callable, Dict, List, Optional, Sequence, Tuple
import numpy as np
import torch
def rot_matmul(a: torch.Tensor, b: torch.Tensor) -> torch.Tensor:
"""
Performs matrix multiplication of two rotation matrix tensors. Written out by hand to avoid AMP downcasting.
Args:
a: [*, 3, 3] left multiplicand
b: [*, 3, 3] right multiplicand
Returns:
The product ab
"""
def row_mul(i: int) -> torch.Tensor:
return torch.stack(
[
a[..., i, 0] * b[..., 0, 0] + a[..., i, 1] * b[..., 1, 0] + a[..., i, 2] * b[..., 2, 0],
a[..., i, 0] * b[..., 0, 1] + a[..., i, 1] * b[..., 1, 1] + a[..., i, 2] * b[..., 2, 1],
a[..., i, 0] * b[..., 0, 2] + a[..., i, 1] * b[..., 1, 2] + a[..., i, 2] * b[..., 2, 2],
],
dim=-1,
)
return torch.stack(
[
row_mul(0),
row_mul(1),
row_mul(2),
],
dim=-2,
)
def rot_vec_mul(r: torch.Tensor, t: torch.Tensor) -> torch.Tensor:
"""
Applies a rotation to a vector. Written out by hand to avoid transfer to avoid AMP downcasting.
Args:
r: [*, 3, 3] rotation matrices
t: [*, 3] coordinate tensors
Returns:
[*, 3] rotated coordinates
"""
x, y, z = torch.unbind(t, dim=-1)
return torch.stack(
[
r[..., 0, 0] * x + r[..., 0, 1] * y + r[..., 0, 2] * z,
r[..., 1, 0] * x + r[..., 1, 1] * y + r[..., 1, 2] * z,
r[..., 2, 0] * x + r[..., 2, 1] * y + r[..., 2, 2] * z,
],
dim=-1,
)
@lru_cache(maxsize=None)
def identity_rot_mats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
rots = torch.eye(3, dtype=dtype, device=device, requires_grad=requires_grad)
rots = rots.view(*((1,) * len(batch_dims)), 3, 3)
rots = rots.expand(*batch_dims, -1, -1)
rots = rots.contiguous()
return rots
@lru_cache(maxsize=None)
def identity_trans(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
trans = torch.zeros((*batch_dims, 3), dtype=dtype, device=device, requires_grad=requires_grad)
return trans
@lru_cache(maxsize=None)
def identity_quats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
quat = torch.zeros((*batch_dims, 4), dtype=dtype, device=device, requires_grad=requires_grad)
with torch.no_grad():
quat[..., 0] = 1
return quat
_quat_elements: List[str] = ["a", "b", "c", "d"]
_qtr_keys: List[str] = [l1 + l2 for l1 in _quat_elements for l2 in _quat_elements]
_qtr_ind_dict: Dict[str, int] = {key: ind for ind, key in enumerate(_qtr_keys)}
def _to_mat(pairs: List[Tuple[str, int]]) -> np.ndarray:
mat = np.zeros((4, 4))
for key, value in pairs:
ind = _qtr_ind_dict[key]
mat[ind // 4][ind % 4] = value
return mat
_QTR_MAT = np.zeros((4, 4, 3, 3))
_QTR_MAT[..., 0, 0] = _to_mat([("aa", 1), ("bb", 1), ("cc", -1), ("dd", -1)])
_QTR_MAT[..., 0, 1] = _to_mat([("bc", 2), ("ad", -2)])
_QTR_MAT[..., 0, 2] = _to_mat([("bd", 2), ("ac", 2)])
_QTR_MAT[..., 1, 0] = _to_mat([("bc", 2), ("ad", 2)])
_QTR_MAT[..., 1, 1] = _to_mat([("aa", 1), ("bb", -1), ("cc", 1), ("dd", -1)])
_QTR_MAT[..., 1, 2] = _to_mat([("cd", 2), ("ab", -2)])
_QTR_MAT[..., 2, 0] = _to_mat([("bd", 2), ("ac", -2)])
_QTR_MAT[..., 2, 1] = _to_mat([("cd", 2), ("ab", 2)])
_QTR_MAT[..., 2, 2] = _to_mat([("aa", 1), ("bb", -1), ("cc", -1), ("dd", 1)])
def quat_to_rot(quat: torch.Tensor) -> torch.Tensor:
"""
Converts a quaternion to a rotation matrix.
Args:
quat: [*, 4] quaternions
Returns:
[*, 3, 3] rotation matrices
"""
# [*, 4, 4]
quat = quat[..., None] * quat[..., None, :]
# [4, 4, 3, 3]
mat = _get_quat("_QTR_MAT", dtype=quat.dtype, device=quat.device)
# [*, 4, 4, 3, 3]
shaped_qtr_mat = mat.view((1,) * len(quat.shape[:-2]) + mat.shape)
quat = quat[..., None, None] * shaped_qtr_mat
# [*, 3, 3]
return torch.sum(quat, dim=(-3, -4))
def rot_to_quat(rot: torch.Tensor) -> torch.Tensor:
if rot.shape[-2:] != (3, 3):
raise ValueError("Input rotation is incorrectly shaped")
[[xx, xy, xz], [yx, yy, yz], [zx, zy, zz]] = [[rot[..., i, j] for j in range(3)] for i in range(3)]
k = [
[
xx + yy + zz,
zy - yz,
xz - zx,
yx - xy,
],
[
zy - yz,
xx - yy - zz,
xy + yx,
xz + zx,
],
[
xz - zx,
xy + yx,
yy - xx - zz,
yz + zy,
],
[
yx - xy,
xz + zx,
yz + zy,
zz - xx - yy,
],
]
_, vectors = torch.linalg.eigh((1.0 / 3.0) * torch.stack([torch.stack(t, dim=-1) for t in k], dim=-2))
return vectors[..., -1]
_QUAT_MULTIPLY = np.zeros((4, 4, 4))
_QUAT_MULTIPLY[:, :, 0] = [[1, 0, 0, 0], [0, -1, 0, 0], [0, 0, -1, 0], [0, 0, 0, -1]]
_QUAT_MULTIPLY[:, :, 1] = [[0, 1, 0, 0], [1, 0, 0, 0], [0, 0, 0, 1], [0, 0, -1, 0]]
_QUAT_MULTIPLY[:, :, 2] = [[0, 0, 1, 0], [0, 0, 0, -1], [1, 0, 0, 0], [0, 1, 0, 0]]
_QUAT_MULTIPLY[:, :, 3] = [[0, 0, 0, 1], [0, 0, 1, 0], [0, -1, 0, 0], [1, 0, 0, 0]]
_QUAT_MULTIPLY_BY_VEC = _QUAT_MULTIPLY[:, 1:, :]
_CACHED_QUATS: Dict[str, np.ndarray] = {
"_QTR_MAT": _QTR_MAT,
"_QUAT_MULTIPLY": _QUAT_MULTIPLY,
"_QUAT_MULTIPLY_BY_VEC": _QUAT_MULTIPLY_BY_VEC,
}
@lru_cache(maxsize=None)
def _get_quat(quat_key: str, dtype: torch.dtype, device: torch.device) -> torch.Tensor:
return torch.tensor(_CACHED_QUATS[quat_key], dtype=dtype, device=device)
def quat_multiply(quat1: torch.Tensor, quat2: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by another quaternion."""
mat = _get_quat("_QUAT_MULTIPLY", dtype=quat1.dtype, device=quat1.device)
reshaped_mat = mat.view((1,) * len(quat1.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat1[..., :, None, None] * quat2[..., None, :, None], dim=(-3, -2))
def quat_multiply_by_vec(quat: torch.Tensor, vec: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by a pure-vector quaternion."""
mat = _get_quat("_QUAT_MULTIPLY_BY_VEC", dtype=quat.dtype, device=quat.device)
reshaped_mat = mat.view((1,) * len(quat.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat[..., :, None, None] * vec[..., None, :, None], dim=(-3, -2))
def invert_rot_mat(rot_mat: torch.Tensor) -> torch.Tensor:
return rot_mat.transpose(-1, -2)
def invert_quat(quat: torch.Tensor) -> torch.Tensor:
quat_prime = quat.clone()
quat_prime[..., 1:] *= -1
inv = quat_prime / torch.sum(quat**2, dim=-1, keepdim=True)
return inv
class Rotation:
"""
A 3D rotation. Depending on how the object is initialized, the rotation is represented by either a rotation matrix
or a quaternion, though both formats are made available by helper functions. To simplify gradient computation, the
underlying format of the rotation cannot be changed in-place. Like Rigid, the class is designed to mimic the
behavior of a torch Tensor, almost as if each Rotation object were a tensor of rotations, in one format or another.
"""
def __init__(
self,
rot_mats: Optional[torch.Tensor] = None,
quats: Optional[torch.Tensor] = None,
normalize_quats: bool = True,
):
"""
Args:
rot_mats:
A [*, 3, 3] rotation matrix tensor. Mutually exclusive with quats
quats:
A [*, 4] quaternion. Mutually exclusive with rot_mats. If normalize_quats is not True, must be a unit
quaternion
normalize_quats:
If quats is specified, whether to normalize quats
"""
if (rot_mats is None and quats is None) or (rot_mats is not None and quats is not None):
raise ValueError("Exactly one input argument must be specified")
if (rot_mats is not None and rot_mats.shape[-2:] != (3, 3)) or (quats is not None and quats.shape[-1] != 4):
raise ValueError("Incorrectly shaped rotation matrix or quaternion")
# Force full-precision
if quats is not None:
quats = quats.to(dtype=torch.float32)
if rot_mats is not None:
rot_mats = rot_mats.to(dtype=torch.float32)
if quats is not None and normalize_quats:
quats = quats / torch.linalg.norm(quats, dim=-1, keepdim=True)
self._rot_mats = rot_mats
self._quats = quats
@staticmethod
def identity(
shape,
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rotation:
"""
Returns an identity Rotation.
Args:
shape:
The "shape" of the resulting Rotation object. See documentation for the shape property
dtype:
The torch dtype for the rotation
device:
The torch device for the new rotation
requires_grad:
Whether the underlying tensors in the new rotation object should require gradient computation
fmt:
One of "quat" or "rot_mat". Determines the underlying format of the new object's rotation
Returns:
A new identity rotation
"""
if fmt == "rot_mat":
rot_mats = identity_rot_mats(
shape,
dtype,
device,
requires_grad,
)
return Rotation(rot_mats=rot_mats, quats=None)
elif fmt == "quat":
quats = identity_quats(shape, dtype, device, requires_grad)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError(f"Invalid format: f{fmt}")
# Magic methods
def __getitem__(self, index: Any) -> Rotation:
"""
Allows torch-style indexing over the virtual shape of the rotation object. See documentation for the shape
property.
Args:
index:
A torch index. E.g. (1, 3, 2), or (slice(None,))
Returns:
The indexed rotation
"""
if type(index) != tuple:
index = (index,)
if self._rot_mats is not None:
rot_mats = self._rot_mats[index + (slice(None), slice(None))]
return Rotation(rot_mats=rot_mats)
elif self._quats is not None:
quats = self._quats[index + (slice(None),)]
return Rotation(quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __mul__(self, right: torch.Tensor) -> Rotation:
"""
Pointwise left multiplication of the rotation with a tensor. Can be used to e.g. mask the Rotation.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
if self._rot_mats is not None:
rot_mats = self._rot_mats * right[..., None, None]
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats * right[..., None]
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __rmul__(self, left: torch.Tensor) -> Rotation:
"""
Reverse pointwise multiplication of the rotation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
# Properties
@property
def shape(self) -> torch.Size:
"""
Returns the virtual shape of the rotation object. This shape is defined as the batch dimensions of the
underlying rotation matrix or quaternion. If the Rotation was initialized with a [10, 3, 3] rotation matrix
tensor, for example, the resulting shape would be [10].
Returns:
The virtual shape of the rotation object
"""
if self._rot_mats is not None:
return self._rot_mats.shape[:-2]
elif self._quats is not None:
return self._quats.shape[:-1]
else:
raise ValueError("Both rotations are None")
@property
def dtype(self) -> torch.dtype:
"""
Returns the dtype of the underlying rotation.
Returns:
The dtype of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.dtype
elif self._quats is not None:
return self._quats.dtype
else:
raise ValueError("Both rotations are None")
@property
def device(self) -> torch.device:
"""
The device of the underlying rotation
Returns:
The device of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.device
elif self._quats is not None:
return self._quats.device
else:
raise ValueError("Both rotations are None")
@property
def requires_grad(self) -> bool:
"""
Returns the requires_grad property of the underlying rotation
Returns:
The requires_grad property of the underlying tensor
"""
if self._rot_mats is not None:
return self._rot_mats.requires_grad
elif self._quats is not None:
return self._quats.requires_grad
else:
raise ValueError("Both rotations are None")
def get_rot_mats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a rotation matrix tensor.
Returns:
The rotation as a rotation matrix tensor
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return quat_to_rot(self._quats)
else:
raise ValueError("Both rotations are None")
def get_quats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a quaternion tensor.
Depending on whether the Rotation was initialized with a quaternion, this function may call torch.linalg.eigh.
Returns:
The rotation as a quaternion tensor.
"""
if self._rot_mats is not None:
return rot_to_quat(self._rot_mats)
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
def get_cur_rot(self) -> torch.Tensor:
"""
Return the underlying rotation in its current form
Returns:
The stored rotation
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
# Rotation functions
def compose_q_update_vec(self, q_update_vec: torch.Tensor, normalize_quats: bool = True) -> Rotation:
"""
Returns a new quaternion Rotation after updating the current object's underlying rotation with a quaternion
update, formatted as a [*, 3] tensor whose final three columns represent x, y, z such that (1, x, y, z) is the
desired (not necessarily unit) quaternion update.
Args:
q_update_vec:
A [*, 3] quaternion update tensor
normalize_quats:
Whether to normalize the output quaternion
Returns:
An updated Rotation
"""
quats = self.get_quats()
new_quats = quats + quat_multiply_by_vec(quats, q_update_vec)
return Rotation(
rot_mats=None,
quats=new_quats,
normalize_quats=normalize_quats,
)
def compose_r(self, r: Rotation) -> Rotation:
"""
Compose the rotation matrices of the current Rotation object with those of another.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
r1 = self.get_rot_mats()
r2 = r.get_rot_mats()
new_rot_mats = rot_matmul(r1, r2)
return Rotation(rot_mats=new_rot_mats, quats=None)
def compose_q(self, r: Rotation, normalize_quats: bool = True) -> Rotation:
"""
Compose the quaternions of the current Rotation object with those of another.
Depending on whether either Rotation was initialized with quaternions, this function may call
torch.linalg.eigh.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
q1 = self.get_quats()
q2 = r.get_quats()
new_quats = quat_multiply(q1, q2)
return Rotation(rot_mats=None, quats=new_quats, normalize_quats=normalize_quats)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Apply the current Rotation as a rotation matrix to a set of 3D coordinates.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] rotated points
"""
rot_mats = self.get_rot_mats()
return rot_vec_mul(rot_mats, pts)
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
The inverse of the apply() method.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] inverse-rotated points
"""
rot_mats = self.get_rot_mats()
inv_rot_mats = invert_rot_mat(rot_mats)
return rot_vec_mul(inv_rot_mats, pts)
def invert(self) -> Rotation:
"""
Returns the inverse of the current Rotation.
Returns:
The inverse of the current Rotation
"""
if self._rot_mats is not None:
return Rotation(rot_mats=invert_rot_mat(self._rot_mats), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=invert_quat(self._quats),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
# "Tensor" stuff
def unsqueeze(self, dim: int) -> Rotation:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shape of the Rotation object.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed Rotation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
if self._rot_mats is not None:
rot_mats = self._rot_mats.unsqueeze(dim if dim >= 0 else dim - 2)
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats.unsqueeze(dim if dim >= 0 else dim - 1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
@staticmethod
def cat(rs: Sequence[Rotation], dim: int) -> Rotation:
"""
Concatenates rotations along one of the batch dimensions. Analogous to torch.cat().
Note that the output of this operation is always a rotation matrix, regardless of the format of input
rotations.
Args:
rs:
A list of rotation objects
dim:
The dimension along which the rotations should be concatenated
Returns:
A concatenated Rotation object in rotation matrix format
"""
rot_mats = torch.cat(
[r.get_rot_mats() for r in rs],
dim=dim if dim >= 0 else dim - 2,
)
return Rotation(rot_mats=rot_mats, quats=None)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rotation:
"""
Apply a Tensor -> Tensor function to underlying rotation tensors, mapping over the rotation dimension(s). Can
be used e.g. to sum out a one-hot batch dimension.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rotation
Returns:
The transformed Rotation object
"""
if self._rot_mats is not None:
rot_mats = self._rot_mats.view(self._rot_mats.shape[:-2] + (9,))
rot_mats = torch.stack(list(map(fn, torch.unbind(rot_mats, dim=-1))), dim=-1)
rot_mats = rot_mats.view(rot_mats.shape[:-1] + (3, 3))
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = torch.stack(list(map(fn, torch.unbind(self._quats, dim=-1))), dim=-1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def cuda(self) -> Rotation:
"""
Analogous to the cuda() method of torch Tensors
Returns:
A copy of the Rotation in CUDA memory
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.cuda(), quats=None)
elif self._quats is not None:
return Rotation(rot_mats=None, quats=self._quats.cuda(), normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def to(self, device: Optional[torch.device], dtype: Optional[torch.dtype]) -> Rotation:
"""
Analogous to the to() method of torch Tensors
Args:
device:
A torch device
dtype:
A torch dtype
Returns:
A copy of the Rotation using the new device and dtype
"""
if self._rot_mats is not None:
return Rotation(
rot_mats=self._rot_mats.to(device=device, dtype=dtype),
quats=None,
)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.to(device=device, dtype=dtype),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
def detach(self) -> Rotation:
"""
Returns a copy of the Rotation whose underlying Tensor has been detached from its torch graph.
Returns:
A copy of the Rotation whose underlying Tensor has been detached from its torch graph
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.detach(), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.detach(),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
class Rigid:
"""
A class representing a rigid transformation. Little more than a wrapper around two objects: a Rotation object and a
[*, 3] translation Designed to behave approximately like a single torch tensor with the shape of the shared batch
dimensions of its component parts.
"""
def __init__(self, rots: Optional[Rotation], trans: Optional[torch.Tensor]):
"""
Args:
rots: A [*, 3, 3] rotation tensor
trans: A corresponding [*, 3] translation tensor
"""
# (we need device, dtype, etc. from at least one input)
batch_dims, dtype, device, requires_grad = None, None, None, None
if trans is not None:
batch_dims = trans.shape[:-1]
dtype = trans.dtype
device = trans.device
requires_grad = trans.requires_grad
elif rots is not None:
batch_dims = rots.shape
dtype = rots.dtype
device = rots.device
requires_grad = rots.requires_grad
else:
raise ValueError("At least one input argument must be specified")
if rots is None:
rots = Rotation.identity(
batch_dims,
dtype,
device,
requires_grad,
)
elif trans is None:
trans = identity_trans(
batch_dims,
dtype,
device,
requires_grad,
)
assert rots is not None
assert trans is not None
if (rots.shape != trans.shape[:-1]) or (rots.device != trans.device):
raise ValueError("Rots and trans incompatible")
# Force full precision. Happens to the rotations automatically.
trans = trans.to(dtype=torch.float32)
self._rots = rots
self._trans = trans
@staticmethod
def identity(
shape: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rigid:
"""
Constructs an identity transformation.
Args:
shape:
The desired shape
dtype:
The dtype of both internal tensors
device:
The device of both internal tensors
requires_grad:
Whether grad should be enabled for the internal tensors
Returns:
The identity transformation
"""
return Rigid(
Rotation.identity(shape, dtype, device, requires_grad, fmt=fmt),
identity_trans(shape, dtype, device, requires_grad),
)
def __getitem__(self, index: Any) -> Rigid:
"""
Indexes the affine transformation with PyTorch-style indices. The index is applied to the shared dimensions of
both the rotation and the translation.
E.g.::
r = Rotation(rot_mats=torch.rand(10, 10, 3, 3), quats=None) t = Rigid(r, torch.rand(10, 10, 3)) indexed =
t[3, 4:6] assert(indexed.shape == (2,)) assert(indexed.get_rots().shape == (2,))
assert(indexed.get_trans().shape == (2, 3))
Args:
index: A standard torch tensor index. E.g. 8, (10, None, 3),
or (3, slice(0, 1, None))
Returns:
The indexed tensor
"""
if type(index) != tuple:
index = (index,)
return Rigid(
self._rots[index],
self._trans[index + (slice(None),)],
)
def __mul__(self, right: torch.Tensor) -> Rigid:
"""
Pointwise left multiplication of the transformation with a tensor. Can be used to e.g. mask the Rigid.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
new_rots = self._rots * right
new_trans = self._trans * right[..., None]
return Rigid(new_rots, new_trans)
def __rmul__(self, left: torch.Tensor) -> Rigid:
"""
Reverse pointwise multiplication of the transformation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
@property
def shape(self) -> torch.Size:
"""
Returns the shape of the shared dimensions of the rotation and the translation.
Returns:
The shape of the transformation
"""
return self._trans.shape[:-1]
@property
def device(self) -> torch.device:
"""
Returns the device on which the Rigid's tensors are located.
Returns:
The device on which the Rigid's tensors are located
"""
return self._trans.device
def get_rots(self) -> Rotation:
"""
Getter for the rotation.
Returns:
The rotation object
"""
return self._rots
def get_trans(self) -> torch.Tensor:
"""
Getter for the translation.
Returns:
The stored translation
"""
return self._trans
def compose_q_update_vec(self, q_update_vec: torch.Tensor) -> Rigid:
"""
Composes the transformation with a quaternion update vector of shape [*, 6], where the final 6 columns
represent the x, y, and z values of a quaternion of form (1, x, y, z) followed by a 3D translation.
Args:
q_vec: The quaternion update vector.
Returns:
The composed transformation.
"""
q_vec, t_vec = q_update_vec[..., :3], q_update_vec[..., 3:]
new_rots = self._rots.compose_q_update_vec(q_vec)
trans_update = self._rots.apply(t_vec)
new_translation = self._trans + trans_update
return Rigid(new_rots, new_translation)
def compose(self, r: Rigid) -> Rigid:
"""
Composes the current rigid object with another.
Args:
r:
Another Rigid object
Returns:
The composition of the two transformations
"""
new_rot = self._rots.compose_r(r._rots)
new_trans = self._rots.apply(r._trans) + self._trans
return Rigid(new_rot, new_trans)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor.
Returns:
The transformed points.
"""
rotated = self._rots.apply(pts)
return rotated + self._trans
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the inverse of the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor
Returns:
The transformed points.
"""
pts = pts - self._trans
return self._rots.invert_apply(pts)
def invert(self) -> Rigid:
"""
Inverts the transformation.
Returns:
The inverse transformation.
"""
rot_inv = self._rots.invert()
trn_inv = rot_inv.apply(self._trans)
return Rigid(rot_inv, -1 * trn_inv)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Apply a Tensor -> Tensor function to underlying translation and rotation tensors, mapping over the
translation/rotation dimensions respectively.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rigid
Returns:
The transformed Rigid object
"""
new_rots = self._rots.map_tensor_fn(fn)
new_trans = torch.stack(list(map(fn, torch.unbind(self._trans, dim=-1))), dim=-1)
return Rigid(new_rots, new_trans)
def to_tensor_4x4(self) -> torch.Tensor:
"""
Converts a transformation to a homogenous transformation tensor.
Returns:
A [*, 4, 4] homogenous transformation tensor
"""
tensor = self._trans.new_zeros((*self.shape, 4, 4))
tensor[..., :3, :3] = self._rots.get_rot_mats()
tensor[..., :3, 3] = self._trans
tensor[..., 3, 3] = 1
return tensor
@staticmethod
def from_tensor_4x4(t: torch.Tensor) -> Rigid:
"""
Constructs a transformation from a homogenous transformation tensor.
Args:
t: [*, 4, 4] homogenous transformation tensor
Returns:
T object with shape [*]
"""
if t.shape[-2:] != (4, 4):
raise ValueError("Incorrectly shaped input tensor")
rots = Rotation(rot_mats=t[..., :3, :3], quats=None)
trans = t[..., :3, 3]
return Rigid(rots, trans)
def to_tensor_7(self) -> torch.Tensor:
"""
Converts a transformation to a tensor with 7 final columns, four for the quaternion followed by three for the
translation.
Returns:
A [*, 7] tensor representation of the transformation
"""
tensor = self._trans.new_zeros((*self.shape, 7))
tensor[..., :4] = self._rots.get_quats()
tensor[..., 4:] = self._trans
return tensor
@staticmethod
def from_tensor_7(t: torch.Tensor, normalize_quats: bool = False) -> Rigid:
if t.shape[-1] != 7:
raise ValueError("Incorrectly shaped input tensor")
quats, trans = t[..., :4], t[..., 4:]
rots = Rotation(rot_mats=None, quats=quats, normalize_quats=normalize_quats)
return Rigid(rots, trans)
@staticmethod
def from_3_points(
p_neg_x_axis: torch.Tensor, origin: torch.Tensor, p_xy_plane: torch.Tensor, eps: float = 1e-8
) -> Rigid:
"""
Implements algorithm 21. Constructs transformations from sets of 3 points using the Gram-Schmidt algorithm.
Args:
p_neg_x_axis: [*, 3] coordinates
origin: [*, 3] coordinates used as frame origins
p_xy_plane: [*, 3] coordinates
eps: Small epsilon value
Returns:
A transformation object of shape [*]
"""
p_neg_x_axis_unbound = torch.unbind(p_neg_x_axis, dim=-1)
origin_unbound = torch.unbind(origin, dim=-1)
p_xy_plane_unbound = torch.unbind(p_xy_plane, dim=-1)
e0 = [c1 - c2 for c1, c2 in zip(origin_unbound, p_neg_x_axis_unbound)]
e1 = [c1 - c2 for c1, c2 in zip(p_xy_plane_unbound, origin_unbound)]
denom = torch.sqrt(sum(c * c for c in e0) + eps * torch.ones_like(e0[0]))
e0 = [c / denom for c in e0]
dot = sum((c1 * c2 for c1, c2 in zip(e0, e1)))
e1 = [c2 - c1 * dot for c1, c2 in zip(e0, e1)]
denom = torch.sqrt(sum((c * c for c in e1)) + eps * torch.ones_like(e1[0]))
e1 = [c / denom for c in e1]
e2 = [
e0[1] * e1[2] - e0[2] * e1[1],
e0[2] * e1[0] - e0[0] * e1[2],
e0[0] * e1[1] - e0[1] * e1[0],
]
rots = torch.stack([c for tup in zip(e0, e1, e2) for c in tup], dim=-1)
rots = rots.reshape(rots.shape[:-1] + (3, 3))
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, torch.stack(origin_unbound, dim=-1))
def unsqueeze(self, dim: int) -> Rigid:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shared dimensions of the rotation/translation.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed transformation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
rots = self._rots.unsqueeze(dim)
trans = self._trans.unsqueeze(dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
@staticmethod
def cat(ts: Sequence[Rigid], dim: int) -> Rigid:
"""
Concatenates transformations along a new dimension.
Args:
ts:
A list of T objects
dim:
The dimension along which the transformations should be concatenated
Returns:
A concatenated transformation object
"""
rots = Rotation.cat([t._rots for t in ts], dim)
trans = torch.cat([t._trans for t in ts], dim=dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
def apply_rot_fn(self, fn: Callable[[Rotation], Rotation]) -> Rigid:
"""
Applies a Rotation -> Rotation function to the stored rotation object.
Args:
fn: A function of type Rotation -> Rotation
Returns:
A transformation object with a transformed rotation.
"""
return Rigid(fn(self._rots), self._trans)
def apply_trans_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Applies a Tensor -> Tensor function to the stored translation.
Args:
fn:
A function of type Tensor -> Tensor to be applied to the translation
Returns:
A transformation object with a transformed translation.
"""
return Rigid(self._rots, fn(self._trans))
def scale_translation(self, trans_scale_factor: float) -> Rigid:
"""
Scales the translation by a constant factor.
Args:
trans_scale_factor:
The constant factor
Returns:
A transformation object with a scaled translation.
"""
return self.apply_trans_fn(lambda t: t * trans_scale_factor)
def stop_rot_gradient(self) -> Rigid:
"""
Detaches the underlying rotation object
Returns:
A transformation object with detached rotations
"""
return self.apply_rot_fn(lambda r: r.detach())
@staticmethod
def make_transform_from_reference(
n_xyz: torch.Tensor, ca_xyz: torch.Tensor, c_xyz: torch.Tensor, eps: float = 1e-20
) -> Rigid:
"""
Returns a transformation object from reference coordinates.
Note that this method does not take care of symmetries. If you provide the atom positions in the non-standard
way, the N atom will end up not at [-0.527250, 1.359329, 0.0] but instead at [-0.527250, -1.359329, 0.0]. You
need to take care of such cases in your code.
Args:
n_xyz: A [*, 3] tensor of nitrogen xyz coordinates.
ca_xyz: A [*, 3] tensor of carbon alpha xyz coordinates.
c_xyz: A [*, 3] tensor of carbon xyz coordinates.
Returns:
A transformation object. After applying the translation and rotation to the reference backbone, the
coordinates will approximately equal to the input coordinates.
"""
translation = -1 * ca_xyz
n_xyz = n_xyz + translation
c_xyz = c_xyz + translation
c_x, c_y, c_z = [c_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + c_x**2 + c_y**2)
sin_c1 = -c_y / norm
cos_c1 = c_x / norm
c1_rots = sin_c1.new_zeros((*sin_c1.shape, 3, 3))
c1_rots[..., 0, 0] = cos_c1
c1_rots[..., 0, 1] = -1 * sin_c1
c1_rots[..., 1, 0] = sin_c1
c1_rots[..., 1, 1] = cos_c1
c1_rots[..., 2, 2] = 1
norm = torch.sqrt(eps + c_x**2 + c_y**2 + c_z**2)
sin_c2 = c_z / norm
cos_c2 = torch.sqrt(c_x**2 + c_y**2) / norm
c2_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
c2_rots[..., 0, 0] = cos_c2
c2_rots[..., 0, 2] = sin_c2
c2_rots[..., 1, 1] = 1
c2_rots[..., 2, 0] = -1 * sin_c2
c2_rots[..., 2, 2] = cos_c2
c_rots = rot_matmul(c2_rots, c1_rots)
n_xyz = rot_vec_mul(c_rots, n_xyz)
_, n_y, n_z = [n_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + n_y**2 + n_z**2)
sin_n = -n_z / norm
cos_n = n_y / norm
n_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
n_rots[..., 0, 0] = 1
n_rots[..., 1, 1] = cos_n
n_rots[..., 1, 2] = -1 * sin_n
n_rots[..., 2, 1] = sin_n
n_rots[..., 2, 2] = cos_n
rots = rot_matmul(n_rots, c_rots)
rots = rots.transpose(-1, -2)
translation = -1 * translation
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, translation)
def cuda(self) -> Rigid:
"""
Moves the transformation object to GPU memory
Returns:
A version of the transformation on GPU
"""
return Rigid(self._rots.cuda(), self._trans.cuda())
| 41,122 | 32.083669 | 119 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/chunk_utils.py | # Copyright 2021 AlQuraishi Laboratory
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import math
from functools import partial
from typing import Any, Callable, Dict, Iterable, List, Optional, Sequence, Tuple, Union
import torch
from .tensor_utils import tensor_tree_map, tree_map
def _fetch_dims(tree: Union[dict, list, tuple, torch.Tensor]) -> List[Tuple[int, ...]]:
shapes = []
if isinstance(tree, dict):
for v in tree.values():
shapes.extend(_fetch_dims(v))
elif isinstance(tree, (list, tuple)):
for t in tree:
shapes.extend(_fetch_dims(t))
elif isinstance(tree, torch.Tensor):
shapes.append(tree.shape)
else:
raise ValueError("Not supported")
return shapes
@torch.jit.ignore
def _flat_idx_to_idx(flat_idx: int, dims: Tuple[int, ...]) -> Tuple[int, ...]:
idx = []
for d in reversed(dims):
idx.append(flat_idx % d)
flat_idx = flat_idx // d
return tuple(reversed(idx))
@torch.jit.ignore
def _get_minimal_slice_set(
start: Sequence[int],
end: Sequence[int],
dims: Sequence[int],
start_edges: Optional[Sequence[bool]] = None,
end_edges: Optional[Sequence[bool]] = None,
) -> List[Tuple[slice, ...]]:
"""
Produces an ordered sequence of tensor slices that, when used in sequence on a tensor with shape dims, yields
tensors that contain every leaf in the contiguous range [start, end]. Care is taken to yield a short sequence of
slices, and perhaps even the shortest possible (I'm pretty sure it's the latter).
end is INCLUSIVE.
"""
# start_edges and end_edges both indicate whether, starting from any given
# dimension, the start/end index is at the top/bottom edge of the
# corresponding tensor, modeled as a tree
def reduce_edge_list(l: List[bool]) -> None:
tally = True
for i in range(len(l)):
reversed_idx = -1 * (i + 1)
l[reversed_idx] &= tally
tally = l[reversed_idx]
if start_edges is None:
start_edges = [s == 0 for s in start]
reduce_edge_list(start_edges)
if end_edges is None:
end_edges = [e == (d - 1) for e, d in zip(end, dims)]
reduce_edge_list(end_edges)
# Base cases. Either start/end are empty and we're done, or the final,
# one-dimensional tensor can be simply sliced
if len(start) == 0:
return [()]
elif len(start) == 1:
return [(slice(start[0], end[0] + 1),)]
slices: List[Tuple[slice, ...]] = []
path_list: List[slice] = []
# Dimensions common to start and end can be selected directly
for s, e in zip(start, end):
if s == e:
path_list.append(slice(s, s + 1))
else:
break
path: Tuple[slice, ...] = tuple(path_list)
divergence_idx = len(path)
# start == end, and we're done
if divergence_idx == len(dims):
return [path]
def upper() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
sdi = start[divergence_idx]
return tuple(
path + (slice(sdi, sdi + 1),) + s
for s in _get_minimal_slice_set(
start[divergence_idx + 1 :],
[d - 1 for d in dims[divergence_idx + 1 :]],
dims[divergence_idx + 1 :],
start_edges=start_edges[divergence_idx + 1 :],
end_edges=[True for _ in end_edges[divergence_idx + 1 :]],
)
)
def lower() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
edi = end[divergence_idx]
return tuple(
path + (slice(edi, edi + 1),) + s
for s in _get_minimal_slice_set(
[0 for _ in start[divergence_idx + 1 :]],
end[divergence_idx + 1 :],
dims[divergence_idx + 1 :],
start_edges=[True for _ in start_edges[divergence_idx + 1 :]],
end_edges=end_edges[divergence_idx + 1 :],
)
)
# If both start and end are at the edges of the subtree rooted at
# divergence_idx, we can just select the whole subtree at once
if start_edges[divergence_idx] and end_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx] + 1),))
# If just start is at the edge, we can grab almost all of the subtree,
# treating only the ragged bottom edge as an edge case
elif start_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx]),))
slices.extend(lower())
# Analogous to the previous case, but the top is ragged this time
elif end_edges[divergence_idx]:
slices.extend(upper())
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx] + 1),))
# If both sides of the range are ragged, we need to handle both sides
# separately. If there's contiguous meat in between them, we can index it
# in one big chunk
else:
slices.extend(upper())
middle_ground = end[divergence_idx] - start[divergence_idx]
if middle_ground > 1:
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx]),))
slices.extend(lower())
return slices
@torch.jit.ignore
def _chunk_slice(t: torch.Tensor, flat_start: int, flat_end: int, no_batch_dims: int) -> torch.Tensor:
"""
Equivalent to
t.reshape((-1,) + t.shape[no_batch_dims:])[flat_start:flat_end]
but without the need for the initial reshape call, which can be memory-intensive in certain situations. The only
reshape operations in this function are performed on sub-tensors that scale with (flat_end - flat_start), the chunk
size.
"""
batch_dims = t.shape[:no_batch_dims]
start_idx = list(_flat_idx_to_idx(flat_start, batch_dims))
# _get_minimal_slice_set is inclusive
end_idx = list(_flat_idx_to_idx(flat_end - 1, batch_dims))
# Get an ordered list of slices to perform
slices = _get_minimal_slice_set(
start_idx,
end_idx,
batch_dims,
)
sliced_tensors = [t[s] for s in slices]
return torch.cat([s.view((-1,) + t.shape[no_batch_dims:]) for s in sliced_tensors])
def chunk_layer(
layer: Callable,
inputs: Dict[str, Any],
chunk_size: int,
no_batch_dims: int,
low_mem: bool = False,
_out: Any = None,
_add_into_out: bool = False,
) -> Any:
"""
Implements the "chunking" procedure described in section 1.11.8.
Layer outputs and inputs are assumed to be simple "pytrees," consisting only of (arbitrarily nested) lists, tuples,
and dicts with torch.Tensor leaves.
Args:
layer:
The layer to be applied chunk-wise
inputs:
A (non-nested) dictionary of keyworded inputs. All leaves must be tensors and must share the same batch
dimensions.
chunk_size:
The number of sub-batches per chunk. If multiple batch dimensions are specified, a "sub-batch" is defined
as a single indexing of all batch dimensions simultaneously (s.t. the number of sub-batches is the product
of the batch dimensions).
no_batch_dims:
How many of the initial dimensions of each input tensor can be considered batch dimensions.
low_mem:
Avoids flattening potentially large input tensors. Unnecessary in most cases, and is ever so slightly
slower than the default setting.
Returns:
The reassembled output of the layer on the inputs.
"""
if not (len(inputs) > 0):
raise ValueError("Must provide at least one input")
initial_dims = [shape[:no_batch_dims] for shape in _fetch_dims(inputs)]
orig_batch_dims = tuple([max(s) for s in zip(*initial_dims)])
def _prep_inputs(t: torch.Tensor) -> torch.Tensor:
if not low_mem:
if not sum(t.shape[:no_batch_dims]) == no_batch_dims:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
t = t.reshape(-1, *t.shape[no_batch_dims:])
else:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
return t
prepped_inputs: Dict[str, Any] = tensor_tree_map(_prep_inputs, inputs)
prepped_outputs = None
if _out is not None:
prepped_outputs = tensor_tree_map(lambda t: t.view([-1] + list(t.shape[no_batch_dims:])), _out)
flat_batch_dim = 1
for d in orig_batch_dims:
flat_batch_dim *= d
no_chunks = flat_batch_dim // chunk_size + (flat_batch_dim % chunk_size != 0)
def _select_chunk(t: torch.Tensor) -> torch.Tensor:
return t[i : i + chunk_size] if t.shape[0] != 1 else t
i = 0
out = prepped_outputs
for _ in range(no_chunks):
# Chunk the input
if not low_mem:
select_chunk = _select_chunk
else:
select_chunk = partial(
_chunk_slice,
flat_start=i,
flat_end=min(flat_batch_dim, i + chunk_size),
no_batch_dims=len(orig_batch_dims),
)
chunks: Dict[str, Any] = tensor_tree_map(select_chunk, prepped_inputs)
# Run the layer on the chunk
output_chunk = layer(**chunks)
# Allocate space for the output
if out is None:
out = tensor_tree_map(lambda t: t.new_zeros((flat_batch_dim,) + t.shape[1:]), output_chunk)
# Put the chunk in its pre-allocated space
if isinstance(output_chunk, dict):
def assign(d1: dict, d2: dict) -> None:
for k, v in d1.items():
if isinstance(v, dict):
assign(v, d2[k])
else:
if _add_into_out:
v[i : i + chunk_size] += d2[k]
else:
v[i : i + chunk_size] = d2[k]
assign(out, output_chunk)
elif isinstance(output_chunk, tuple):
for x1, x2 in zip(out, output_chunk):
if _add_into_out:
x1[i : i + chunk_size] += x2
else:
x1[i : i + chunk_size] = x2
elif isinstance(output_chunk, torch.Tensor):
if _add_into_out:
out[i : i + chunk_size] += output_chunk
else:
out[i : i + chunk_size] = output_chunk
else:
raise ValueError("Not supported")
i += chunk_size
out = tensor_tree_map(lambda t: t.view(orig_batch_dims + t.shape[1:]), out)
return out
class ChunkSizeTuner:
def __init__(
self,
# Heuristically, runtimes for most of the modules in the network
# plateau earlier than this on all GPUs I've run the model on.
max_chunk_size: int = 512,
):
self.max_chunk_size = max_chunk_size
self.cached_chunk_size: Optional[int] = None
self.cached_arg_data: Optional[tuple] = None
def _determine_favorable_chunk_size(self, fn: Callable, args: tuple, min_chunk_size: int) -> int:
logging.info("Tuning chunk size...")
if min_chunk_size >= self.max_chunk_size:
return min_chunk_size
candidates: List[int] = [2**l for l in range(int(math.log(self.max_chunk_size, 2)) + 1)]
candidates = [c for c in candidates if c > min_chunk_size]
candidates = [min_chunk_size] + candidates
candidates[-1] += 4
def test_chunk_size(chunk_size: int) -> bool:
try:
with torch.no_grad():
fn(*args, chunk_size=chunk_size)
return True
except RuntimeError:
return False
min_viable_chunk_size_index = 0
i = len(candidates) - 1
while i > min_viable_chunk_size_index:
viable = test_chunk_size(candidates[i])
if not viable:
i = (min_viable_chunk_size_index + i) // 2
else:
min_viable_chunk_size_index = i
i = (i + len(candidates) - 1) // 2
return candidates[min_viable_chunk_size_index]
def _compare_arg_caches(self, ac1: Iterable, ac2: Iterable) -> bool:
consistent = True
for a1, a2 in zip(ac1, ac2):
assert type(ac1) == type(ac2)
if isinstance(ac1, (list, tuple)):
consistent &= self._compare_arg_caches(a1, a2)
elif isinstance(ac1, dict):
a1_items = [v for _, v in sorted(a1.items(), key=lambda x: x[0])]
a2_items = [v for _, v in sorted(a2.items(), key=lambda x: x[0])]
consistent &= self._compare_arg_caches(a1_items, a2_items)
else:
consistent &= a1 == a2
return consistent
def tune_chunk_size(
self,
representative_fn: Callable,
args: tuple,
min_chunk_size: int,
) -> int:
consistent = True
arg_data: tuple = tree_map(lambda a: a.shape if isinstance(a, torch.Tensor) else a, args, object)
if self.cached_arg_data is not None:
# If args have changed shape/value, we need to re-tune
assert len(self.cached_arg_data) == len(arg_data)
consistent = self._compare_arg_caches(self.cached_arg_data, arg_data)
else:
# Otherwise, we can reuse the precomputed value
consistent = False
if not consistent:
self.cached_chunk_size = self._determine_favorable_chunk_size(
representative_fn,
args,
min_chunk_size,
)
self.cached_arg_data = arg_data
assert self.cached_chunk_size is not None
return self.cached_chunk_size
| 14,392 | 35.163317 | 119 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/protein.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Protein data type."""
import dataclasses
import re
import string
from typing import Any, Dict, Iterator, List, Mapping, Optional, Sequence, Tuple
import numpy as np
from . import residue_constants
FeatureDict = Mapping[str, np.ndarray]
ModelOutput = Mapping[str, Any] # Is a nested dict.
PICO_TO_ANGSTROM = 0.01
@dataclasses.dataclass(frozen=True)
class Protein:
"""Protein structure representation."""
# Cartesian coordinates of atoms in angstroms. The atom types correspond to
# residue_constants.atom_types, i.e. the first three are N, CA, CB.
atom_positions: np.ndarray # [num_res, num_atom_type, 3]
# Amino-acid type for each residue represented as an integer between 0 and
# 20, where 20 is 'X'.
aatype: np.ndarray # [num_res]
# Binary float mask to indicate presence of a particular atom. 1.0 if an atom
# is present and 0.0 if not. This should be used for loss masking.
atom_mask: np.ndarray # [num_res, num_atom_type]
# Residue index as used in PDB. It is not necessarily continuous or 0-indexed.
residue_index: np.ndarray # [num_res]
# B-factors, or temperature factors, of each residue (in sq. angstroms units),
# representing the displacement of the residue from its ground truth mean
# value.
b_factors: np.ndarray # [num_res, num_atom_type]
# Chain indices for multi-chain predictions
chain_index: Optional[np.ndarray] = None
# Optional remark about the protein. Included as a comment in output PDB
# files
remark: Optional[str] = None
# Templates used to generate this protein (prediction-only)
parents: Optional[Sequence[str]] = None
# Chain corresponding to each parent
parents_chain_index: Optional[Sequence[int]] = None
def from_proteinnet_string(proteinnet_str: str) -> Protein:
tag_re = r"(\[[A-Z]+\]\n)"
tags: List[str] = [tag.strip() for tag in re.split(tag_re, proteinnet_str) if len(tag) > 0]
groups: Iterator[Tuple[str, List[str]]] = zip(tags[0::2], [l.split("\n") for l in tags[1::2]])
atoms: List[str] = ["N", "CA", "C"]
aatype = None
atom_positions = None
atom_mask = None
for g in groups:
if "[PRIMARY]" == g[0]:
seq = g[1][0].strip()
for i in range(len(seq)):
if seq[i] not in residue_constants.restypes:
seq[i] = "X" # FIXME: strings are immutable
aatype = np.array(
[residue_constants.restype_order.get(res_symbol, residue_constants.restype_num) for res_symbol in seq]
)
elif "[TERTIARY]" == g[0]:
tertiary: List[List[float]] = []
for axis in range(3):
tertiary.append(list(map(float, g[1][axis].split())))
tertiary_np = np.array(tertiary)
atom_positions = np.zeros((len(tertiary[0]) // 3, residue_constants.atom_type_num, 3)).astype(np.float32)
for i, atom in enumerate(atoms):
atom_positions[:, residue_constants.atom_order[atom], :] = np.transpose(tertiary_np[:, i::3])
atom_positions *= PICO_TO_ANGSTROM
elif "[MASK]" == g[0]:
mask = np.array(list(map({"-": 0, "+": 1}.get, g[1][0].strip())))
atom_mask = np.zeros(
(
len(mask),
residue_constants.atom_type_num,
)
).astype(np.float32)
for i, atom in enumerate(atoms):
atom_mask[:, residue_constants.atom_order[atom]] = 1
atom_mask *= mask[..., None]
assert aatype is not None
return Protein(
atom_positions=atom_positions,
atom_mask=atom_mask,
aatype=aatype,
residue_index=np.arange(len(aatype)),
b_factors=None,
)
def get_pdb_headers(prot: Protein, chain_id: int = 0) -> List[str]:
pdb_headers: List[str] = []
remark = prot.remark
if remark is not None:
pdb_headers.append(f"REMARK {remark}")
parents = prot.parents
parents_chain_index = prot.parents_chain_index
if parents is not None and parents_chain_index is not None:
parents = [p for i, p in zip(parents_chain_index, parents) if i == chain_id]
if parents is None or len(parents) == 0:
parents = ["N/A"]
pdb_headers.append(f"PARENT {' '.join(parents)}")
return pdb_headers
def add_pdb_headers(prot: Protein, pdb_str: str) -> str:
"""Add pdb headers to an existing PDB string. Useful during multi-chain
recycling
"""
out_pdb_lines: List[str] = []
lines = pdb_str.split("\n")
remark = prot.remark
if remark is not None:
out_pdb_lines.append(f"REMARK {remark}")
parents_per_chain: List[List[str]]
if prot.parents is not None and len(prot.parents) > 0:
parents_per_chain = []
if prot.parents_chain_index is not None:
parent_dict: Dict[str, List[str]] = {}
for p, i in zip(prot.parents, prot.parents_chain_index):
parent_dict.setdefault(str(i), [])
parent_dict[str(i)].append(p)
max_idx = max([int(chain_idx) for chain_idx in parent_dict])
for i in range(max_idx + 1):
chain_parents = parent_dict.get(str(i), ["N/A"])
parents_per_chain.append(chain_parents)
else:
parents_per_chain.append(list(prot.parents))
else:
parents_per_chain = [["N/A"]]
def make_parent_line(p: Sequence[str]) -> str:
return f"PARENT {' '.join(p)}"
out_pdb_lines.append(make_parent_line(parents_per_chain[0]))
chain_counter = 0
for i, l in enumerate(lines):
if "PARENT" not in l and "REMARK" not in l:
out_pdb_lines.append(l)
if "TER" in l and "END" not in lines[i + 1]:
chain_counter += 1
if not chain_counter >= len(parents_per_chain):
chain_parents = parents_per_chain[chain_counter]
else:
chain_parents = ["N/A"]
out_pdb_lines.append(make_parent_line(chain_parents))
return "\n".join(out_pdb_lines)
def to_pdb(prot: Protein) -> str:
"""Converts a `Protein` instance to a PDB string.
Args:
prot: The protein to convert to PDB.
Returns:
PDB string.
"""
restypes = residue_constants.restypes + ["X"]
def res_1to3(r: int) -> str:
return residue_constants.restype_1to3.get(restypes[r], "UNK")
atom_types = residue_constants.atom_types
pdb_lines: List[str] = []
atom_mask = prot.atom_mask
aatype = prot.aatype
atom_positions = prot.atom_positions
residue_index = prot.residue_index.astype(np.int32)
b_factors = prot.b_factors
chain_index = prot.chain_index
if np.any(aatype > residue_constants.restype_num):
raise ValueError("Invalid aatypes.")
headers = get_pdb_headers(prot)
if len(headers) > 0:
pdb_lines.extend(headers)
n = aatype.shape[0]
atom_index = 1
prev_chain_index = 0
chain_tags = string.ascii_uppercase
chain_tag = None
# Add all atom sites.
for i in range(n):
res_name_3 = res_1to3(aatype[i])
for atom_name, pos, mask, b_factor in zip(atom_types, atom_positions[i], atom_mask[i], b_factors[i]):
if mask < 0.5:
continue
record_type = "ATOM"
name = atom_name if len(atom_name) == 4 else f" {atom_name}"
alt_loc = ""
insertion_code = ""
occupancy = 1.00
element = atom_name[0] # Protein supports only C, N, O, S, this works.
charge = ""
chain_tag = "A"
if chain_index is not None:
chain_tag = chain_tags[chain_index[i]]
# PDB is a columnar format, every space matters here!
atom_line = (
f"{record_type:<6}{atom_index:>5} {name:<4}{alt_loc:>1}"
f"{res_name_3:>3} {chain_tag:>1}"
f"{residue_index[i]:>4}{insertion_code:>1} "
f"{pos[0]:>8.3f}{pos[1]:>8.3f}{pos[2]:>8.3f}"
f"{occupancy:>6.2f}{b_factor:>6.2f} "
f"{element:>2}{charge:>2}"
)
pdb_lines.append(atom_line)
atom_index += 1
should_terminate = i == n - 1
if chain_index is not None:
if i != n - 1 and chain_index[i + 1] != prev_chain_index:
should_terminate = True
prev_chain_index = chain_index[i + 1]
if should_terminate:
# Close the chain.
chain_end = "TER"
chain_termination_line = (
f"{chain_end:<6}{atom_index:>5} {res_1to3(aatype[i]):>3} {chain_tag:>1}{residue_index[i]:>4}"
)
pdb_lines.append(chain_termination_line)
atom_index += 1
if i != n - 1:
# "prev" is a misnomer here. This happens at the beginning of
# each new chain.
pdb_lines.extend(get_pdb_headers(prot, prev_chain_index))
pdb_lines.append("END")
pdb_lines.append("")
return "\n".join(pdb_lines)
def ideal_atom_mask(prot: Protein) -> np.ndarray:
"""Computes an ideal atom mask.
`Protein.atom_mask` typically is defined according to the atoms that are reported in the PDB. This function
computes a mask according to heavy atoms that should be present in the given sequence of amino acids.
Args:
prot: `Protein` whose fields are `numpy.ndarray` objects.
Returns:
An ideal atom mask.
"""
return residue_constants.STANDARD_ATOM_MASK[prot.aatype]
def from_prediction(
features: FeatureDict,
result: ModelOutput,
b_factors: Optional[np.ndarray] = None,
chain_index: Optional[np.ndarray] = None,
remark: Optional[str] = None,
parents: Optional[Sequence[str]] = None,
parents_chain_index: Optional[Sequence[int]] = None,
) -> Protein:
"""Assembles a protein from a prediction.
Args:
features: Dictionary holding model inputs.
result: Dictionary holding model outputs.
b_factors: (Optional) B-factors to use for the protein.
chain_index: (Optional) Chain indices for multi-chain predictions
remark: (Optional) Remark about the prediction
parents: (Optional) List of template names
Returns:
A protein instance.
"""
return Protein(
aatype=features["aatype"],
atom_positions=result["final_atom_positions"],
atom_mask=result["final_atom_mask"],
residue_index=features["residue_index"] + 1,
b_factors=b_factors if b_factors is not None else np.zeros_like(result["final_atom_mask"]),
chain_index=chain_index,
remark=remark,
parents=parents,
parents_chain_index=parents_chain_index,
)
| 11,490 | 33.821212 | 118 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/__init__.py | from .chunk_utils import chunk_layer
from .data_transforms import make_atom14_masks
from .feats import atom14_to_atom37, frames_and_literature_positions_to_atom14_pos, torsion_angles_to_frames
from .loss import compute_predicted_aligned_error, compute_tm
from .protein import Protein as OFProtein
from .protein import to_pdb
from .rigid_utils import Rigid, Rotation
from .tensor_utils import dict_multimap, flatten_final_dims, permute_final_dims
| 446 | 48.666667 | 108 | py |
transformers | transformers-main/src/transformers/models/esm/openfold_utils/data_transforms.py | # Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict
import numpy as np
import torch
from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map
def make_atom14_masks(protein: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]:
"""Construct denser atom positions (14 dimensions instead of 37)."""
restype_atom14_to_atom37_list = []
restype_atom37_to_atom14_list = []
restype_atom14_mask_list = []
for rt in rc.restypes:
atom_names = rc.restype_name_to_atom14_names[rc.restype_1to3[rt]]
restype_atom14_to_atom37_list.append([(rc.atom_order[name] if name else 0) for name in atom_names])
atom_name_to_idx14 = {name: i for i, name in enumerate(atom_names)}
restype_atom37_to_atom14_list.append(
[(atom_name_to_idx14[name] if name in atom_name_to_idx14 else 0) for name in rc.atom_types]
)
restype_atom14_mask_list.append([(1.0 if name else 0.0) for name in atom_names])
# Add dummy mapping for restype 'UNK'
restype_atom14_to_atom37_list.append([0] * 14)
restype_atom37_to_atom14_list.append([0] * 37)
restype_atom14_mask_list.append([0.0] * 14)
restype_atom14_to_atom37 = torch.tensor(
restype_atom14_to_atom37_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom37_to_atom14 = torch.tensor(
restype_atom37_to_atom14_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom14_mask = torch.tensor(
restype_atom14_mask_list,
dtype=torch.float32,
device=protein["aatype"].device,
)
protein_aatype = protein["aatype"].to(torch.long)
# create the mapping for (residx, atom14) --> atom37, i.e. an array
# with shape (num_res, 14) containing the atom37 indices for this protein
residx_atom14_to_atom37 = restype_atom14_to_atom37[protein_aatype]
residx_atom14_mask = restype_atom14_mask[protein_aatype]
protein["atom14_atom_exists"] = residx_atom14_mask
protein["residx_atom14_to_atom37"] = residx_atom14_to_atom37.long()
# create the gather indices for mapping back
residx_atom37_to_atom14 = restype_atom37_to_atom14[protein_aatype]
protein["residx_atom37_to_atom14"] = residx_atom37_to_atom14.long()
# create the corresponding mask
restype_atom37_mask = torch.zeros([21, 37], dtype=torch.float32, device=protein["aatype"].device)
for restype, restype_letter in enumerate(rc.restypes):
restype_name = rc.restype_1to3[restype_letter]
atom_names = rc.residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = rc.atom_order[atom_name]
restype_atom37_mask[restype, atom_type] = 1
residx_atom37_mask = restype_atom37_mask[protein_aatype]
protein["atom37_atom_exists"] = residx_atom37_mask
return protein
def make_atom14_masks_np(batch: Dict[str, torch.Tensor]) -> Dict[str, np.ndarray]:
batch = tree_map(lambda n: torch.tensor(n, device=batch["aatype"].device), batch, np.ndarray)
out = tensor_tree_map(lambda t: np.array(t), make_atom14_masks(batch))
return out
| 3,764 | 39.053191 | 107 | py |
transformers | transformers-main/src/transformers/models/vit_msn/configuration_vit_msn.py | # coding=utf-8
# Copyright 2022 Facebook AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" ViT MSN model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
VIT_MSN_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"sayakpaul/vit-msn-base": "https://huggingface.co/sayakpaul/vit-msn-base/resolve/main/config.json",
# See all ViT MSN models at https://huggingface.co/models?filter=vit_msn
}
class ViTMSNConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ViTMSNModel`]. It is used to instantiate an ViT
MSN model according to the specified arguments, defining the model architecture. Instantiating a configuration with
the defaults will yield a similar configuration to that of the ViT
[facebook/vit_msn_base](https://huggingface.co/facebook/vit_msn_base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to 224):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
Example:
```python
>>> from transformers import ViTMSNModel, ViTMSNConfig
>>> # Initializing a ViT MSN vit-msn-base style configuration
>>> configuration = ViTConfig()
>>> # Initializing a model from the vit-msn-base style configuration
>>> model = ViTMSNModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "vit_msn"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-06,
image_size=224,
patch_size=16,
num_channels=3,
qkv_bias=True,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.qkv_bias = qkv_bias
| 5,062 | 41.90678 | 119 | py |
transformers | transformers-main/src/transformers/models/vit_msn/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_vit_msn": ["VIT_MSN_PRETRAINED_CONFIG_ARCHIVE_MAP", "ViTMSNConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_vit_msn"] = [
"VIT_MSN_PRETRAINED_MODEL_ARCHIVE_LIST",
"ViTMSNModel",
"ViTMSNForImageClassification",
"ViTMSNPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_vit_msn import VIT_MSN_PRETRAINED_CONFIG_ARCHIVE_MAP, ViTMSNConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_vit_msn import (
VIT_MSN_PRETRAINED_MODEL_ARCHIVE_LIST,
ViTMSNForImageClassification,
ViTMSNModel,
ViTMSNPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 1,783 | 32.037037 | 113 | py |
transformers | transformers-main/src/transformers/models/vit_msn/convert_msn_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert ViT MSN checkpoints from the original repository: https://github.com/facebookresearch/msn"""
import argparse
import json
import requests
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import ViTImageProcessor, ViTMSNConfig, ViTMSNModel
from transformers.image_utils import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD
torch.set_grad_enabled(False)
# here we list all keys to be renamed (original name on the left, our name on the right)
def create_rename_keys(config, base_model=False):
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"module.blocks.{i}.norm1.weight", f"vit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"module.blocks.{i}.norm1.bias", f"vit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append(
(f"module.blocks.{i}.attn.proj.weight", f"vit.encoder.layer.{i}.attention.output.dense.weight")
)
rename_keys.append((f"module.blocks.{i}.attn.proj.bias", f"vit.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"module.blocks.{i}.norm2.weight", f"vit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"module.blocks.{i}.norm2.bias", f"vit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"module.blocks.{i}.mlp.fc1.weight", f"vit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"module.blocks.{i}.mlp.fc1.bias", f"vit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"module.blocks.{i}.mlp.fc2.weight", f"vit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"module.blocks.{i}.mlp.fc2.bias", f"vit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
("module.cls_token", "vit.embeddings.cls_token"),
("module.patch_embed.proj.weight", "vit.embeddings.patch_embeddings.projection.weight"),
("module.patch_embed.proj.bias", "vit.embeddings.patch_embeddings.projection.bias"),
("module.pos_embed", "vit.embeddings.position_embeddings"),
]
)
if base_model:
# layernorm + pooler
rename_keys.extend(
[
("module.norm.weight", "layernorm.weight"),
("module.norm.bias", "layernorm.bias"),
]
)
# if just the base model, we should remove "vit" from all keys that start with "vit"
rename_keys = [(pair[0], pair[1][4:]) if pair[1].startswith("vit") else pair for pair in rename_keys]
else:
# layernorm + classification head
rename_keys.extend(
[
("norm.weight", "vit.layernorm.weight"),
("norm.bias", "vit.layernorm.bias"),
("head.weight", "classifier.weight"),
("head.bias", "classifier.bias"),
]
)
return rename_keys
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config, base_model=False):
for i in range(config.num_hidden_layers):
if base_model:
prefix = ""
else:
prefix = "vit."
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"module.blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"module.blocks.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
def remove_classification_head_(state_dict):
ignore_keys = ["head.weight", "head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
def remove_projection_head(state_dict):
# projection head is used in the self-supervised pre-training in MSN,
# for downstream task it's not needed.
ignore_keys = [
"module.fc.fc1.weight",
"module.fc.fc1.bias",
"module.fc.bn1.weight",
"module.fc.bn1.bias",
"module.fc.bn1.running_mean",
"module.fc.bn1.running_var",
"module.fc.bn1.num_batches_tracked",
"module.fc.fc2.weight",
"module.fc.fc2.bias",
"module.fc.bn2.weight",
"module.fc.bn2.bias",
"module.fc.bn2.running_mean",
"module.fc.bn2.running_var",
"module.fc.bn2.num_batches_tracked",
"module.fc.fc3.weight",
"module.fc.fc3.bias",
]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def convert_vit_msn_checkpoint(checkpoint_url, pytorch_dump_folder_path):
config = ViTMSNConfig()
config.num_labels = 1000
repo_id = "datasets/huggingface/label-files"
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
if "s16" in checkpoint_url:
config.hidden_size = 384
config.intermediate_size = 1536
config.num_attention_heads = 6
elif "l16" in checkpoint_url:
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
config.hidden_dropout_prob = 0.1
elif "b4" in checkpoint_url:
config.patch_size = 4
elif "l7" in checkpoint_url:
config.patch_size = 7
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
config.hidden_dropout_prob = 0.1
model = ViTMSNModel(config)
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")["target_encoder"]
image_processor = ViTImageProcessor(size=config.image_size)
remove_projection_head(state_dict)
rename_keys = create_rename_keys(config, base_model=True)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, base_model=True)
model.load_state_dict(state_dict)
model.eval()
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
image_processor = ViTImageProcessor(
size=config.image_size, image_mean=IMAGENET_DEFAULT_MEAN, image_std=IMAGENET_DEFAULT_STD
)
inputs = image_processor(images=image, return_tensors="pt")
# forward pass
torch.manual_seed(2)
outputs = model(**inputs)
last_hidden_state = outputs.last_hidden_state
# The following Colab Notebook was used to generate these outputs:
# https://colab.research.google.com/gist/sayakpaul/3672419a04f5997827503fd84079bdd1/scratchpad.ipynb
if "s16" in checkpoint_url:
expected_slice = torch.tensor([[-1.0915, -1.4876, -1.1809]])
elif "b16" in checkpoint_url:
expected_slice = torch.tensor([[14.2889, -18.9045, 11.7281]])
elif "l16" in checkpoint_url:
expected_slice = torch.tensor([[41.5028, -22.8681, 45.6475]])
elif "b4" in checkpoint_url:
expected_slice = torch.tensor([[-4.3868, 5.2932, -0.4137]])
else:
expected_slice = torch.tensor([[-0.1792, -0.6465, 2.4263]])
# verify logits
assert torch.allclose(last_hidden_state[:, 0, :3], expected_slice, atol=1e-4)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving image processor to {pytorch_dump_folder_path}")
image_processor.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--checkpoint_url",
default="https://dl.fbaipublicfiles.com/msn/vits16_800ep.pth.tar",
type=str,
help="URL of the checkpoint you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model directory."
)
args = parser.parse_args()
convert_vit_msn_checkpoint(args.checkpoint_url, args.pytorch_dump_folder_path)
| 9,841 | 39.00813 | 119 | py |
transformers | transformers-main/src/transformers/models/vit_msn/modeling_vit_msn.py | # coding=utf-8
# Copyright 2022 Facebook AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ViT MSN (masked siamese network) model."""
import collections.abc
import math
from typing import Dict, List, Optional, Set, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, ImageClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_vit_msn import ViTMSNConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "ViTMSNConfig"
_CHECKPOINT_FOR_DOC = "facebook/vit-msn-small"
VIT_MSN_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/vit-msn-small",
# See all ViTMSN models at https://huggingface.co/models?filter=vit_msn
]
class ViTMSNEmbeddings(nn.Module):
"""
Construct the CLS token, position and patch embeddings. Optionally, also the mask token.
"""
def __init__(self, config: ViTMSNConfig, use_mask_token: bool = False) -> None:
super().__init__()
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.mask_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size)) if use_mask_token else None
self.patch_embeddings = ViTMSNPatchEmbeddings(config)
num_patches = self.patch_embeddings.num_patches
self.position_embeddings = nn.Parameter(torch.zeros(1, num_patches + 1, config.hidden_size))
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.config = config
def interpolate_pos_encoding(self, embeddings: torch.Tensor, height: int, width: int) -> torch.Tensor:
"""
This method allows to interpolate the pre-trained position encodings, to be able to use the model on higher
resolution images.
Source:
https://github.com/facebookresearch/dino/blob/de9ee3df6cf39fac952ab558447af1fa1365362a/vision_transformer.py#L174
"""
num_patches = embeddings.shape[1] - 1
num_positions = self.position_embeddings.shape[1] - 1
if num_patches == num_positions and height == width:
return self.position_embeddings
class_pos_embed = self.position_embeddings[:, 0]
patch_pos_embed = self.position_embeddings[:, 1:]
dim = embeddings.shape[-1]
patch_window_height = height // self.config.patch_size
patch_window_width = width // self.config.patch_size
# we add a small number to avoid floating point error in the interpolation
# see discussion at https://github.com/facebookresearch/dino/issues/8
patch_window_height, patch_window_width = patch_window_height + 0.1, patch_window_width + 0.1
patch_pos_embed = patch_pos_embed.reshape(1, int(math.sqrt(num_positions)), int(math.sqrt(num_positions)), dim)
patch_pos_embed = patch_pos_embed.permute(0, 3, 1, 2)
patch_pos_embed = nn.functional.interpolate(
patch_pos_embed,
scale_factor=(
patch_window_height / math.sqrt(num_positions),
patch_window_width / math.sqrt(num_positions),
),
mode="bicubic",
align_corners=False,
)
patch_pos_embed = patch_pos_embed.permute(0, 2, 3, 1).view(1, -1, dim)
return torch.cat((class_pos_embed.unsqueeze(0), patch_pos_embed), dim=1)
def forward(
self,
pixel_values: torch.Tensor,
bool_masked_pos: Optional[torch.BoolTensor] = None,
interpolate_pos_encoding: bool = False,
) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
embeddings = self.patch_embeddings(pixel_values, interpolate_pos_encoding=interpolate_pos_encoding)
if bool_masked_pos is not None:
seq_length = embeddings.shape[1]
mask_tokens = self.mask_token.expand(batch_size, seq_length, -1)
# replace the masked visual tokens by mask_tokens
mask = bool_masked_pos.unsqueeze(-1).type_as(mask_tokens)
embeddings = embeddings * (1.0 - mask) + mask_tokens * mask
# add the [CLS] token to the embedded patch tokens
cls_tokens = self.cls_token.expand(batch_size, -1, -1)
embeddings = torch.cat((cls_tokens, embeddings), dim=1)
# add positional encoding to each token
if interpolate_pos_encoding:
embeddings = embeddings + self.interpolate_pos_encoding(embeddings, height, width)
else:
embeddings = embeddings + self.position_embeddings
embeddings = self.dropout(embeddings)
return embeddings
# Copied from transformers.models.vit.modeling_vit.ViTPatchEmbeddings with ViT->ViTMSN
class ViTMSNPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values: torch.Tensor, interpolate_pos_encoding: bool = False) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
f" Expected {self.num_channels} but got {num_channels}."
)
if not interpolate_pos_encoding:
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model"
f" ({self.image_size[0]}*{self.image_size[1]})."
)
embeddings = self.projection(pixel_values).flatten(2).transpose(1, 2)
return embeddings
# Copied from transformers.models.vit.modeling_vit.ViTSelfAttention with ViT->ViTMSN
class ViTMSNSelfAttention(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size,} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}."
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.key = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.value = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self, hidden_states, head_mask: Optional[torch.Tensor] = None, output_attentions: bool = False
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTSelfOutput with ViT->ViTMSN
class ViTMSNSelfOutput(nn.Module):
"""
The residual connection is defined in ViTMSNLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTAttention with ViT->ViTMSN
class ViTMSNAttention(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.attention = ViTMSNSelfAttention(config)
self.output = ViTMSNSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads: Set[int]) -> None:
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.attention.num_attention_heads, self.attention.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(heads)
self.attention.all_head_size = self.attention.attention_head_size * self.attention.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_outputs = self.attention(hidden_states, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTIntermediate with ViT->ViTMSN
class ViTMSNIntermediate(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTOutput with ViT->ViTMSN
class ViTMSNOutput(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTLayer with ViT->ViTMSN
class ViTMSNLayer(nn.Module):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = ViTMSNAttention(config)
self.intermediate = ViTMSNIntermediate(config)
self.output = ViTMSNOutput(config)
self.layernorm_before = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.layernorm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_attention_outputs = self.attention(
self.layernorm_before(hidden_states), # in ViTMSN, layernorm is applied before self-attention
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
# first residual connection
hidden_states = attention_output + hidden_states
# in ViTMSN, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_states)
outputs = (layer_output,) + outputs
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTEncoder with ViT->ViTMSN
class ViTMSNEncoder(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.config = config
self.layer = nn.ModuleList([ViTMSNLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, BaseModelOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
layer_head_mask,
)
else:
layer_outputs = layer_module(hidden_states, layer_head_mask, output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class ViTMSNPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = ViTMSNConfig
base_model_prefix = "vit"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
# todo: Resort to https://github.com/facebookresearch/msn/blob/main/src/deit.py#L200-#L211
# when creating pre-training scripts.
def _init_weights(self, module: Union[nn.Linear, nn.Conv2d, nn.LayerNorm]) -> None:
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module: ViTMSNEncoder, value: bool = False) -> None:
if isinstance(module, ViTMSNEncoder):
module.gradient_checkpointing = value
VIT_MSN_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`ViTMSNConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
VIT_MSN_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`ViTImageProcessor.__call__`]
for details.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
interpolate_pos_encoding (`bool`, *optional*):
Whether to interpolate the pre-trained position encodings.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ViTMSN Model outputting raw hidden-states without any specific head on top.",
VIT_MSN_START_DOCSTRING,
)
class ViTMSNModel(ViTMSNPreTrainedModel):
def __init__(self, config: ViTMSNConfig, use_mask_token: bool = False):
super().__init__(config)
self.config = config
self.embeddings = ViTMSNEmbeddings(config, use_mask_token=use_mask_token)
self.encoder = ViTMSNEncoder(config)
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> ViTMSNPatchEmbeddings:
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune: Dict[int, List[int]]) -> None:
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(VIT_MSN_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
bool_masked_pos: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
interpolate_pos_encoding: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, BaseModelOutput]:
r"""
bool_masked_pos (`torch.BoolTensor` of shape `(batch_size, num_patches)`, *optional*):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, ViTMSNModel
>>> import torch
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/vit-msn-small")
>>> model = ViTMSNModel.from_pretrained("facebook/vit-msn-small")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> with torch.no_grad():
... outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
pixel_values, bool_masked_pos=bool_masked_pos, interpolate_pos_encoding=interpolate_pos_encoding
)
encoder_outputs = self.encoder(
embedding_output,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output)
if not return_dict:
head_outputs = (sequence_output,)
return head_outputs + encoder_outputs[1:]
return BaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
# Caution: We don't have the weights for the classification head yet. This class
# is here for the users that are interested to fine-tune the base model (ViTMSNModel).
@add_start_docstrings(
"""
ViTMSN Model with an image classification head on top e.g. for ImageNet.
""",
VIT_MSN_START_DOCSTRING,
)
class ViTMSNForImageClassification(ViTMSNPreTrainedModel):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.vit = ViTMSNModel(config)
# Classifier head
self.classifier = nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(VIT_MSN_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ImageClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
interpolate_pos_encoding: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, ImageClassifierOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, ViTMSNForImageClassification
>>> import torch
>>> from PIL import Image
>>> import requests
>>> torch.manual_seed(2) # doctest: +IGNORE_RESULT
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/vit-msn-small")
>>> model = ViTMSNForImageClassification.from_pretrained("facebook/vit-msn-small")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> with torch.no_grad():
... logits = model(**inputs).logits
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_label = logits.argmax(-1).item()
>>> print(model.config.id2label[predicted_label])
Kerry blue terrier
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.vit(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
interpolate_pos_encoding=interpolate_pos_encoding,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output[:, 0, :])
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 30,091 | 41.927247 | 121 | py |
transformers | transformers-main/src/transformers/models/xmod/configuration_xmod.py | # coding=utf-8
# Copyright 2023 The Meta AI Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" X-MOD configuration"""
from collections import OrderedDict
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
XMOD_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/xmod-base": "https://huggingface.co/facebook/xmod-base/resolve/main/config.json",
"facebook/xmod-large-prenorm": "https://huggingface.co/facebook/xmod-large-prenorm/resolve/main/config.json",
"facebook/xmod-base-13-125k": "https://huggingface.co/facebook/xmod-base-13-125k/resolve/main/config.json",
"facebook/xmod-base-30-125k": "https://huggingface.co/facebook/xmod-base-30-125k/resolve/main/config.json",
"facebook/xmod-base-30-195k": "https://huggingface.co/facebook/xmod-base-30-195k/resolve/main/config.json",
"facebook/xmod-base-60-125k": "https://huggingface.co/facebook/xmod-base-60-125k/resolve/main/config.json",
"facebook/xmod-base-60-265k": "https://huggingface.co/facebook/xmod-base-60-265k/resolve/main/config.json",
"facebook/xmod-base-75-125k": "https://huggingface.co/facebook/xmod-base-75-125k/resolve/main/config.json",
"facebook/xmod-base-75-269k": "https://huggingface.co/facebook/xmod-base-75-269k/resolve/main/config.json",
}
class XmodConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`XmodModel`]. It is used to instantiate an X-MOD
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the
[facebook/xmod-base](https://huggingface.co/facebook/xmod-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the X-MOD model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`XmodModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`XmodModel`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
classifier_dropout (`float`, *optional*):
The dropout ratio for the classification head.
pre_norm (`bool`, *optional*, defaults to `False`):
Whether to apply layer normalization before each block.
adapter_reduction_factor (`int` or `float`, *optional*, defaults to 2):
The factor by which the dimensionality of the adapter is reduced relative to `hidden_size`.
adapter_layer_norm (`bool`, *optional*, defaults to `False`):
Whether to apply a new layer normalization before the adapter modules (shared across all adapters).
adapter_reuse_layer_norm (`bool`, *optional*, defaults to `True`):
Whether to reuse the second layer normalization and apply it before the adapter modules as well.
ln_before_adapter (`bool`, *optional*, defaults to `True`):
Whether to apply the layer normalization before the residual connection around the adapter module.
languages (`Iterable[str]`, *optional*, defaults to `["en_XX"]`):
An iterable of language codes for which adapter modules should be initialized.
default_language (`str`, *optional*):
Language code of a default language. It will be assumed that the input is in this language if no language
codes are explicitly passed to the forward method.
Examples:
```python
>>> from transformers import XmodConfig, XmodModel
>>> # Initializing an X-MOD facebook/xmod-base style configuration
>>> configuration = XmodConfig()
>>> # Initializing a model (with random weights) from the facebook/xmod-base style configuration
>>> model = XmodModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "xmod"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
position_embedding_type="absolute",
use_cache=True,
classifier_dropout=None,
pre_norm=False,
adapter_reduction_factor=2,
adapter_layer_norm=False,
adapter_reuse_layer_norm=True,
ln_before_adapter=True,
languages=("en_XX",),
default_language=None,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.classifier_dropout = classifier_dropout
self.pre_norm = pre_norm
self.adapter_reduction_factor = adapter_reduction_factor
self.adapter_layer_norm = adapter_layer_norm
self.adapter_reuse_layer_norm = adapter_reuse_layer_norm
self.ln_before_adapter = ln_before_adapter
self.languages = list(languages)
self.default_language = default_language
# Copied from transformers.models.roberta.configuration_roberta.RobertaOnnxConfig with Roberta->Xmod
class XmodOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("input_ids", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
| 10,145 | 51.569948 | 119 | py |
transformers | transformers-main/src/transformers/models/xmod/modeling_xmod.py | # coding=utf-8
# Copyright 2023 Meta AI Team and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch X-MOD model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN, gelu
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_xmod import XmodConfig
logger = logging.get_logger(__name__)
XMOD_PRETRAINED_MODEL_ARCHIVE_LIST = [
"facebook/xmod-base",
"facebook/xmod-large-prenorm",
"facebook/xmod-base-13-125k",
"facebook/xmod-base-30-125k",
"facebook/xmod-base-30-195k",
"facebook/xmod-base-60-125k",
"facebook/xmod-base-60-265k",
"facebook/xmod-base-75-125k",
"facebook/xmod-base-75-269k",
# See all X-MOD models at https://huggingface.co/models?filter=xmod
]
# Copied from transformers.models.roberta.modeling_roberta.RobertaEmbeddings with Roberta->Xmod
class XmodEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
# Copied from transformers.models.bert.modeling_bert.BertEmbeddings.__init__
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.register_buffer(
"token_type_ids", torch.zeros(self.position_ids.size(), dtype=torch.long), persistent=False
)
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
# Copied from transformers.models.roberta.modeling_roberta.RobertaSelfAttention with Roberta->Xmod
class XmodSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
use_cache = past_key_value is not None
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
query_length, key_length = query_layer.shape[2], key_layer.shape[2]
if use_cache:
position_ids_l = torch.tensor(key_length - 1, dtype=torch.long, device=hidden_states.device).view(
-1, 1
)
else:
position_ids_l = torch.arange(query_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(key_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in XmodModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class XmodSelfOutput(nn.Module):
# Copied from transformers.models.roberta.modeling_roberta.RobertaSelfOutput.__init__
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class XmodAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
self.self = XmodSelfAttention(config, position_embedding_type=position_embedding_type)
self.output = XmodSelfOutput(config)
self.pruned_heads = set()
self.pre_norm = config.pre_norm
# Copied from transformers.models.roberta.modeling_roberta.RobertaAttention.prune_heads
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
residual = hidden_states
if self.pre_norm:
hidden_states = self.output.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], residual)
if not self.pre_norm:
attention_output = self.output.LayerNorm(attention_output)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.roberta.modeling_roberta.RobertaIntermediate
class XmodIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class XmodAdapter(nn.Module):
def __init__(self, config):
super().__init__()
self.bottleneck_size = config.hidden_size // config.adapter_reduction_factor
self.dense1 = nn.Linear(config.hidden_size, self.bottleneck_size)
self.dense2 = nn.Linear(self.bottleneck_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.adapter_act_fn = ACT2FN[config.hidden_act]
else:
self.adapter_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense1(hidden_states)
hidden_states = self.adapter_act_fn(hidden_states)
hidden_states = self.dense2(hidden_states)
return hidden_states
class XmodOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.ln_before_adapter = config.ln_before_adapter
self.dropout = nn.Dropout(config.hidden_dropout_prob)
if config.adapter_layer_norm:
self.adapter_layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
else:
self.adapter_layer_norm = None
self.adapter_reuse_layer_norm = config.adapter_reuse_layer_norm
self.adapter_modules = nn.ModuleDict({})
for language in config.languages:
self.adapter_modules[str(language)] = XmodAdapter(config)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor, lang_ids: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
hidden_states = self.lang_adapter(lang_ids, hidden_states)
return hidden_states
def lang_adapter(self, lang_ids: torch.Tensor, hidden_states: torch.Tensor):
# Process subsequent samples with the same lang_id in parallel
lang_ids, lang_lengths = torch.unique_consecutive(lang_ids, return_counts=True)
if not self.ln_before_adapter:
residual = hidden_states
if self.adapter_layer_norm is not None:
hidden_states = self.adapter_layer_norm(hidden_states)
elif self.adapter_reuse_layer_norm:
hidden_states = self.LayerNorm(hidden_states)
if self.ln_before_adapter:
residual = hidden_states
split_hidden_states = torch.split(hidden_states, lang_lengths.tolist(), 0)
lang_wise_outputs = []
for i, (lang_id, split_hidden_state) in enumerate(zip(lang_ids, split_hidden_states)):
lang = list(self.adapter_modules.keys())[int(lang_id.item())]
lang_wise_outputs.append(self.adapter_modules[lang](split_hidden_state))
hidden_states = torch.cat(lang_wise_outputs, 0)
hidden_states = self.dropout(hidden_states)
hidden_states += residual
return hidden_states
class XmodLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = XmodAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = XmodAttention(config, position_embedding_type="absolute")
self.intermediate = XmodIntermediate(config)
self.output = XmodOutput(config)
self.pre_norm = config.pre_norm
def forward(
self,
hidden_states: torch.Tensor,
lang_ids: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
residual = attention_output
if self.pre_norm:
attention_output = self.output.LayerNorm(attention_output)
intermediate_output = apply_chunking_to_forward(
self.feed_forward_chunk,
self.chunk_size_feed_forward,
self.seq_len_dim,
attention_output,
)
layer_output = self.output(intermediate_output, residual, lang_ids)
if not self.pre_norm:
layer_output = self.output.LayerNorm(layer_output)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
return self.intermediate(attention_output)
class XmodEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([XmodLayer(config) for _ in range(config.num_hidden_layers)])
self.is_pre_norm = config.pre_norm
if self.is_pre_norm:
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
lang_ids: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
lang_ids,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
lang_ids,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.is_pre_norm:
hidden_states = self.LayerNorm(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.roberta.modeling_roberta.RobertaPooler
class XmodPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class XmodPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = XmodConfig
base_model_prefix = "roberta"
supports_gradient_checkpointing = True
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
# Copied from transformers.models.roberta.modeling_roberta.RobertaPreTrainedModel._set_gradient_checkpointing with Roberta->Xmod
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, XmodEncoder):
module.gradient_checkpointing = value
def set_default_language(self, language: str):
"""
Set the default language code for the model. This is used when the language is not specified in the input.
Args:
language (`str`): The language code, such as `"en_XX"` or `"de_DE"`.
"""
if language not in self.config.languages:
raise ValueError(
f"{self} does not have an adapter for {language}. Supported languages: {list(self.config.languages)}"
)
self.config.default_language = language
def freeze_embeddings_and_language_adapters(self):
"""
Freeze the embeddings and language adapters of the model. Usually, this is applied before the model is
fine-tuned on a downstream task.
"""
logger.info("Freezing embeddings")
for parameter in self.roberta.embeddings.parameters():
parameter.requires_grad = False
logger.info("Freezing adapters")
for layer in self.roberta.encoder.layer:
if layer.output.adapter_layer_norm is not None:
for parameter in layer.output.adapter_layer_norm.parameters():
parameter.requires_grad = False
for parameter in layer.output.adapter_modules.parameters():
parameter.requires_grad = False
XMOD_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`XmodConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
XMOD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
lang_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of the language adapters that should be activated for each sample, respectively. Default: the index
that corresponds to `self.config.default_language`.
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare X-MOD Model transformer outputting raw hidden-states without any specific head on top.",
XMOD_START_DOCSTRING,
)
class XmodModel(XmodPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in *Attention is
all you need*_ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz
Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
.. _*Attention is all you need*: https://arxiv.org/abs/1706.03762
"""
# Copied from transformers.models.bert.modeling_bert.BertModel.__init__ with Bert->Xmod
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = XmodEmbeddings(config)
self.encoder = XmodEncoder(config)
self.pooler = XmodPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.roberta.modeling_roberta.RobertaModel.get_input_embeddings
def get_input_embeddings(self):
return self.embeddings.word_embeddings
# Copied from transformers.models.roberta.modeling_roberta.RobertaModel.set_input_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
# Copied from transformers.models.roberta.modeling_roberta.RobertaModel._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors:
of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if lang_ids is None:
if self.config.default_language is None:
raise ValueError("Input language unknown. Please call `XmodPreTrainedModel.set_default_language()`")
adapter_languages = list(self.encoder.layer[0].output.adapter_modules.keys())
default_lang_id = adapter_languages.index(self.config.default_language)
lang_ids = default_lang_id * torch.ones(batch_size, device=device)
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
lang_ids=lang_ids,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings(
"X-MOD Model with a `language modeling` head on top for CLM fine-tuning.",
XMOD_START_DOCSTRING,
)
class XmodForCausalLM(XmodPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.weight", "lm_head.decoder.bias"]
# Copied from transformers.models.roberta.modeling_roberta.RobertaForCausalLM.__init__ with Roberta->Xmod
def __init__(self, config):
super().__init__(config)
if not config.is_decoder:
logger.warning("If you want to use `XmodLMHeadModel` as a standalone, add `is_decoder=True.`")
self.roberta = XmodModel(config, add_pooling_layer=False)
self.lm_head = XmodLMHead(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.roberta.modeling_roberta.RobertaForCausalLM.get_output_embeddings
def get_output_embeddings(self):
return self.lm_head.decoder
# Copied from transformers.models.roberta.modeling_roberta.RobertaForCausalLM.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
past_key_values: Tuple[Tuple[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], CausalLMOutputWithCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
Returns: `transformers.modeling_outputs.CausalLMOutputWithCrossAttentions` or `tuple(torch.FloatTensor)`
Example:
```python
>>> from transformers import AutoTokenizer, XmodForCausalLM, AutoConfig
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("xlm-roberta-base")
>>> config = AutoConfig.from_pretrained("facebook/xmod-base")
>>> config.is_decoder = True
>>> model = XmodForCausalLM.from_pretrained("facebook/xmod-base", config=config)
>>> model.set_default_language("en_XX")
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.roberta(
input_ids,
lang_ids=lang_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous()
labels = labels[:, 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((lm_loss,) + output) if lm_loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
# Copied from transformers.models.roberta.modeling_roberta.RobertaForCausalLM.prepare_inputs_for_generation
def prepare_inputs_for_generation(self, input_ids, past_key_values=None, attention_mask=None, **model_kwargs):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_shape)
# cut decoder_input_ids if past is used
if past_key_values is not None:
input_ids = input_ids[:, -1:]
return {"input_ids": input_ids, "attention_mask": attention_mask, "past_key_values": past_key_values}
# Copied from transformers.models.roberta.modeling_roberta.RobertaForCausalLM._reorder_cache
def _reorder_cache(self, past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (tuple(past_state.index_select(0, beam_idx) for past_state in layer_past),)
return reordered_past
@add_start_docstrings(
"""X-MOD Model with a `language modeling` head on top.""",
XMOD_START_DOCSTRING,
)
class XmodForMaskedLM(XmodPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.weight", "lm_head.decoder.bias"]
# Copied from transformers.models.roberta.modeling_roberta.RobertaForMaskedLM.__init__ with Roberta->Xmod
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `XmodForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.roberta = XmodModel(config, add_pooling_layer=False)
self.lm_head = XmodLMHead(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.roberta.modeling_roberta.RobertaForMaskedLM.get_output_embeddings
def get_output_embeddings(self):
return self.lm_head.decoder
# Copied from transformers.models.roberta.modeling_roberta.RobertaForMaskedLM.set_output_embeddings
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roberta(
input_ids,
lang_ids=lang_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.roberta.modeling_roberta.RobertaLMHead
class XmodLMHead(nn.Module):
"""Roberta Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
self.decoder.bias = self.bias
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x)
return x
def _tie_weights(self):
# To tie those two weights if they get disconnected (on TPU or when the bias is resized)
# For accelerate compatibility and to not break backward compatibility
if self.decoder.bias.device.type == "meta":
self.decoder.bias = self.bias
else:
self.bias = self.decoder.bias
@add_start_docstrings(
"""
X-MOD Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
XMOD_START_DOCSTRING,
)
class XmodForSequenceClassification(XmodPreTrainedModel):
# Copied from transformers.models.roberta.modeling_roberta.RobertaForSequenceClassification.__init__ with Roberta->Xmod
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.roberta = XmodModel(config, add_pooling_layer=False)
self.classifier = XmodClassificationHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roberta(
input_ids,
lang_ids=lang_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
X-MOD Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
XMOD_START_DOCSTRING,
)
class XmodForMultipleChoice(XmodPreTrainedModel):
# Copied from transformers.models.roberta.modeling_roberta.RobertaForMultipleChoice.__init__ with Roberta->Xmod
def __init__(self, config):
super().__init__(config)
self.roberta = XmodModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], MultipleChoiceModelOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
flat_input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
flat_lang_ids = lang_ids.repeat(input_ids.size(0) * input_ids.size(1)) if lang_ids is not None else None
flat_position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
flat_token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
flat_attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
flat_inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.roberta(
flat_input_ids,
lang_ids=flat_lang_ids,
position_ids=flat_position_ids,
token_type_ids=flat_token_type_ids,
attention_mask=flat_attention_mask,
head_mask=head_mask,
inputs_embeds=flat_inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
X-MOD Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
XMOD_START_DOCSTRING,
)
class XmodForTokenClassification(XmodPreTrainedModel):
# Copied from transformers.models.roberta.modeling_roberta.RobertaForTokenClassification.__init__ with Roberta->Xmod
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.roberta = XmodModel(config, add_pooling_layer=False)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = nn.Dropout(classifier_dropout)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roberta(
input_ids,
lang_ids=lang_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.roberta.modeling_roberta.RobertaClassificationHead
class XmodClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = nn.Dropout(classifier_dropout)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = torch.tanh(x)
x = self.dropout(x)
x = self.out_proj(x)
return x
@add_start_docstrings(
"""
X-MOD Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
XMOD_START_DOCSTRING,
)
class XmodForQuestionAnswering(XmodPreTrainedModel):
# Copied from transformers.models.roberta.modeling_roberta.RobertaForQuestionAnswering.__init__ with Roberta->Xmod
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.roberta = XmodModel(config, add_pooling_layer=False)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(XMOD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
lang_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.roberta(
input_ids,
lang_ids=lang_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.roberta.modeling_roberta.create_position_ids_from_input_ids
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
| 76,513 | 45.259976 | 198 | py |
transformers | transformers-main/src/transformers/models/xmod/__init__.py | # flake8: noqa
# There's no way to ignore "F401 '...' imported but unused" warnings in this
# module, but to preserve other warnings. So, don't check this module at all.
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_xmod": [
"XMOD_PRETRAINED_CONFIG_ARCHIVE_MAP",
"XmodConfig",
"XmodOnnxConfig",
],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_xmod"] = [
"XMOD_PRETRAINED_MODEL_ARCHIVE_LIST",
"XmodForCausalLM",
"XmodForMaskedLM",
"XmodForMultipleChoice",
"XmodForQuestionAnswering",
"XmodForSequenceClassification",
"XmodForTokenClassification",
"XmodModel",
"XmodPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_xmod import XMOD_PRETRAINED_CONFIG_ARCHIVE_MAP, XmodConfig, XmodOnnxConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_xmod import (
XMOD_PRETRAINED_MODEL_ARCHIVE_LIST,
XmodForCausalLM,
XmodForMaskedLM,
XmodForMultipleChoice,
XmodForQuestionAnswering,
XmodForSequenceClassification,
XmodForTokenClassification,
XmodModel,
XmodPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 2,325 | 30.013333 | 113 | py |
transformers | transformers-main/src/transformers/models/xmod/convert_xmod_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert X-MOD checkpoint."""
import argparse
from pathlib import Path
import fairseq
import torch
from fairseq.models.xmod import XMODModel as FairseqXmodModel
from packaging import version
from transformers import XmodConfig, XmodForMaskedLM, XmodForSequenceClassification
from transformers.utils import logging
if version.parse(fairseq.__version__) < version.parse("0.12.2"):
raise Exception("requires fairseq >= 0.12.2")
if version.parse(fairseq.__version__) > version.parse("2"):
raise Exception("requires fairseq < v2")
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SAMPLE_TEXT = "Hello, World!"
SAMPLE_LANGUAGE = "en_XX"
def convert_xmod_checkpoint_to_pytorch(
xmod_checkpoint_path: str, pytorch_dump_folder_path: str, classification_head: bool
):
data_dir = Path("data_bin")
xmod = FairseqXmodModel.from_pretrained(
model_name_or_path=str(Path(xmod_checkpoint_path).parent),
checkpoint_file=Path(xmod_checkpoint_path).name,
_name="xmod_base",
arch="xmod_base",
task="multilingual_masked_lm",
data_name_or_path=str(data_dir),
bpe="sentencepiece",
sentencepiece_model=str(Path(xmod_checkpoint_path).parent / "sentencepiece.bpe.model"),
src_dict=str(data_dir / "dict.txt"),
)
xmod.eval() # disable dropout
print(xmod)
xmod_sent_encoder = xmod.model.encoder.sentence_encoder
config = XmodConfig(
vocab_size=xmod_sent_encoder.embed_tokens.num_embeddings,
hidden_size=xmod.cfg.model.encoder_embed_dim,
num_hidden_layers=xmod.cfg.model.encoder_layers,
num_attention_heads=xmod.cfg.model.encoder_attention_heads,
intermediate_size=xmod.cfg.model.encoder_ffn_embed_dim,
max_position_embeddings=514,
type_vocab_size=1,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
pre_norm=xmod.cfg.model.encoder_normalize_before,
adapter_reduction_factor=getattr(xmod.cfg.model, "bottleneck", 2),
adapter_layer_norm=xmod.cfg.model.adapter_layer_norm,
adapter_reuse_layer_norm=xmod.cfg.model.adapter_reuse_layer_norm,
ln_before_adapter=xmod.cfg.model.ln_before_adapter,
languages=xmod.cfg.model.languages,
)
if classification_head:
config.num_labels = xmod.model.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our X-MOD config:", config)
model = XmodForSequenceClassification(config) if classification_head else XmodForMaskedLM(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.roberta.embeddings.word_embeddings.weight = xmod_sent_encoder.embed_tokens.weight
model.roberta.embeddings.position_embeddings.weight = xmod_sent_encoder.embed_positions.weight
model.roberta.embeddings.token_type_embeddings.weight.data = torch.zeros_like(
model.roberta.embeddings.token_type_embeddings.weight
) # just zero them out b/c xmod doesn't use them.
model.roberta.embeddings.LayerNorm.weight = xmod_sent_encoder.layernorm_embedding.weight
model.roberta.embeddings.LayerNorm.bias = xmod_sent_encoder.layernorm_embedding.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer = model.roberta.encoder.layer[i]
xmod_layer = xmod_sent_encoder.layers[i]
# self attention
self_attn = layer.attention.self
if not (
xmod_layer.self_attn.k_proj.weight.data.shape
== xmod_layer.self_attn.q_proj.weight.data.shape
== xmod_layer.self_attn.v_proj.weight.data.shape
== torch.Size((config.hidden_size, config.hidden_size))
):
raise AssertionError("Dimensions of self-attention weights do not match.")
self_attn.query.weight.data = xmod_layer.self_attn.q_proj.weight
self_attn.query.bias.data = xmod_layer.self_attn.q_proj.bias
self_attn.key.weight.data = xmod_layer.self_attn.k_proj.weight
self_attn.key.bias.data = xmod_layer.self_attn.k_proj.bias
self_attn.value.weight.data = xmod_layer.self_attn.v_proj.weight
self_attn.value.bias.data = xmod_layer.self_attn.v_proj.bias
# self-attention output
self_output = layer.attention.output
if self_output.dense.weight.shape != xmod_layer.self_attn.out_proj.weight.shape:
raise AssertionError("Dimensions of self-attention output weights do not match.")
self_output.dense.weight = xmod_layer.self_attn.out_proj.weight
self_output.dense.bias = xmod_layer.self_attn.out_proj.bias
self_output.LayerNorm.weight = xmod_layer.self_attn_layer_norm.weight
self_output.LayerNorm.bias = xmod_layer.self_attn_layer_norm.bias
# intermediate
intermediate = layer.intermediate
if intermediate.dense.weight.shape != xmod_layer.fc1.weight.shape:
raise AssertionError("Dimensions of intermediate weights do not match.")
intermediate.dense.weight = xmod_layer.fc1.weight
intermediate.dense.bias = xmod_layer.fc1.bias
# output
bert_output = layer.output
if bert_output.dense.weight.shape != xmod_layer.fc2.weight.shape:
raise AssertionError("Dimensions of feed-forward weights do not match.")
bert_output.dense.weight = xmod_layer.fc2.weight
bert_output.dense.bias = xmod_layer.fc2.bias
bert_output.LayerNorm.weight = xmod_layer.final_layer_norm.weight
bert_output.LayerNorm.bias = xmod_layer.final_layer_norm.bias
if bert_output.adapter_layer_norm is not None:
bert_output.adapter_layer_norm.weight = xmod_layer.adapter_layer_norm.weight
bert_output.adapter_layer_norm.bias = xmod_layer.adapter_layer_norm.bias
if sorted(bert_output.adapter_modules.keys()) != sorted(xmod_layer.adapter_modules.keys()):
raise AssertionError("Lists of language adapters do not match.")
for lang_code, adapter in xmod_layer.adapter_modules.items():
to_adapter = bert_output.adapter_modules[lang_code]
from_adapter = xmod_layer.adapter_modules[lang_code]
to_adapter.dense1.weight = from_adapter.fc1.weight
to_adapter.dense1.bias = from_adapter.fc1.bias
to_adapter.dense2.weight = from_adapter.fc2.weight
to_adapter.dense2.bias = from_adapter.fc2.bias
# end of layer
if xmod_sent_encoder.layer_norm is not None:
model.roberta.encoder.LayerNorm.weight = xmod_sent_encoder.layer_norm.weight
model.roberta.encoder.LayerNorm.bias = xmod_sent_encoder.layer_norm.bias
if classification_head:
model.classifier.dense.weight = xmod.model.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = xmod.model.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = xmod.model.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = xmod.model.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = xmod.model.encoder.lm_head.dense.weight
model.lm_head.dense.bias = xmod.model.encoder.lm_head.dense.bias
model.lm_head.layer_norm.weight = xmod.model.encoder.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = xmod.model.encoder.lm_head.layer_norm.bias
model.lm_head.decoder.weight = xmod.model.encoder.lm_head.weight
model.lm_head.decoder.bias = xmod.model.encoder.lm_head.bias
# Let's check that we get the same results.
input_ids = xmod.encode(SAMPLE_TEXT).unsqueeze(0) # batch of size 1
model.roberta.set_default_language(SAMPLE_LANGUAGE)
our_output = model(input_ids)[0]
if classification_head:
their_output = xmod.model.classification_heads["mnli"](xmod.extract_features(input_ids))
else:
their_output = xmod.model(input_ids, lang_id=[SAMPLE_LANGUAGE])[0]
print(our_output.shape, their_output.shape)
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-7
success = torch.allclose(our_output, their_output, atol=1e-3)
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--xmod_checkpoint_path", default=None, type=str, required=True, help="Path the official PyTorch dump."
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--classification_head", action="store_true", help="Whether to convert a final classification head."
)
args = parser.parse_args()
convert_xmod_checkpoint_to_pytorch(
args.xmod_checkpoint_path, args.pytorch_dump_folder_path, args.classification_head
)
| 9,853 | 45.262911 | 117 | py |
transformers | transformers-main/src/transformers/models/sew_d/modeling_sew_d.py | # coding=utf-8
# Copyright 2021 ASAPP Inc. and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch SEW model."""
import math
import warnings
from collections.abc import Sequence
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss, LayerNorm
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import BaseModelOutput, CausalLMOutput, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_sew_d import SEWDConfig
logger = logging.get_logger(__name__)
_HIDDEN_STATES_START_POSITION = 1
# General docstring
_CONFIG_FOR_DOC = "SEWDConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "asapp/sew-d-tiny-100k-ft-ls100h"
_EXPECTED_OUTPUT_SHAPE = [1, 292, 384]
# CTC docstring
_CTC_EXPECTED_OUTPUT = "'MISTER QUILTER IS THE APOSTIL OF THE MIDDLE CLASSES AND WE ARE GLAD TO WELCOME HIS GOSPEL'"
_CTC_EXPECTED_LOSS = 0.21
# Audio class docstring
_SEQ_CLASS_CHECKPOINT = "anton-l/sew-d-mid-400k-ft-keyword-spotting"
_SEQ_CLASS_EXPECTED_OUTPUT = "'_unknown_'"
_SEQ_CLASS_EXPECTED_LOSS = 3.16
SEW_D_PRETRAINED_MODEL_ARCHIVE_LIST = [
"asapp/sew-d-tiny-100k",
"asapp/sew-d-small-100k",
"asapp/sew-d-mid-100k",
"asapp/sew-d-mid-k127-100k",
"asapp/sew-d-base-100k",
"asapp/sew-d-base-plus-100k",
"asapp/sew-d-mid-400k",
"asapp/sew-d-mid-k127-400k",
"asapp/sew-d-base-plus-400k",
# See all SEW models at https://huggingface.co/models?filter=sew-d
]
# Copied from transformers.models.wav2vec2.modeling_wav2vec2._compute_mask_indices
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[torch.LongTensor] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: The shape for which to compute masks. This should be of a tuple of size 2 where
the first element is the batch size and the second element is the length of the axis to span.
mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of
independently generated mask spans of length `mask_length` is computed by
`mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the
actual percentage will be smaller.
mask_length: size of the mask
min_masks: minimum number of masked spans
attention_mask: A (right-padded) attention mask which independently shortens the feature axis of
each batch dimension.
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length}"
f" and `sequence_length`: {sequence_length}`"
)
# epsilon is used for probabilistic rounding
epsilon = np.random.rand(1).item()
def compute_num_masked_span(input_length):
"""Given input length, compute how many spans should be masked"""
num_masked_span = int(mask_prob * input_length / mask_length + epsilon)
num_masked_span = max(num_masked_span, min_masks)
# make sure num masked span <= sequence_length
if num_masked_span * mask_length > sequence_length:
num_masked_span = sequence_length // mask_length
# make sure num_masked span is also <= input_length - (mask_length - 1)
if input_length - (mask_length - 1) < num_masked_span:
num_masked_span = max(input_length - (mask_length - 1), 0)
return num_masked_span
# compute number of masked spans in batch
input_lengths = (
attention_mask.sum(-1).detach().tolist()
if attention_mask is not None
else [sequence_length for _ in range(batch_size)]
)
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
spec_aug_mask_idxs = []
max_num_masked_span = compute_num_masked_span(sequence_length)
if max_num_masked_span == 0:
return spec_aug_mask
for input_length in input_lengths:
# compute num of masked spans for this input
num_masked_span = compute_num_masked_span(input_length)
# get random indices to mask
spec_aug_mask_idx = np.random.choice(
np.arange(input_length - (mask_length - 1)), num_masked_span, replace=False
)
# pick first sampled index that will serve as a dummy index to pad vector
# to ensure same dimension for all batches due to probabilistic rounding
# Picking first sample just pads those vectors twice.
if len(spec_aug_mask_idx) == 0:
# this case can only happen if `input_length` is strictly smaller then
# `sequence_length` in which case the last token has to be a padding
# token which we can use as a dummy mask id
dummy_mask_idx = sequence_length - 1
else:
dummy_mask_idx = spec_aug_mask_idx[0]
spec_aug_mask_idx = np.concatenate(
[spec_aug_mask_idx, np.ones(max_num_masked_span - num_masked_span, dtype=np.int32) * dummy_mask_idx]
)
spec_aug_mask_idxs.append(spec_aug_mask_idx)
spec_aug_mask_idxs = np.array(spec_aug_mask_idxs)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(
spec_aug_mask_idxs[:, :, None], (batch_size, max_num_masked_span, mask_length)
)
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, max_num_masked_span * mask_length)
# add offset to the starting indexes so that indexes now create a span
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, max_num_masked_span, mask_length)).reshape(
batch_size, max_num_masked_span * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# ensure that we cannot have indices larger than sequence_length
if spec_aug_mask_idxs.max() > sequence_length - 1:
spec_aug_mask_idxs[spec_aug_mask_idxs > sequence_length - 1] = sequence_length - 1
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
return spec_aug_mask
# Copied from transformers.models.deberta_v2.modeling_deberta_v2.make_log_bucket_position
def make_log_bucket_position(relative_pos, bucket_size, max_position):
sign = torch.sign(relative_pos)
mid = bucket_size // 2
abs_pos = torch.where(
(relative_pos < mid) & (relative_pos > -mid),
torch.tensor(mid - 1).type_as(relative_pos),
torch.abs(relative_pos),
)
log_pos = (
torch.ceil(torch.log(abs_pos / mid) / torch.log(torch.tensor((max_position - 1) / mid)) * (mid - 1)) + mid
)
bucket_pos = torch.where(abs_pos <= mid, relative_pos.type_as(log_pos), log_pos * sign)
return bucket_pos
# Copied from transformers.models.deberta_v2.modeling_deberta_v2.build_relative_position
def build_relative_position(query_size, key_size, bucket_size=-1, max_position=-1, device=None):
"""
Build relative position according to the query and key
We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key
\\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q -
P_k\\)
Args:
query_size (int): the length of query
key_size (int): the length of key
bucket_size (int): the size of position bucket
max_position (int): the maximum allowed absolute position
device (`torch.device`): the device on which tensors will be created.
Return:
`torch.LongTensor`: A tensor with shape [1, query_size, key_size]
"""
q_ids = torch.arange(0, query_size, device=device)
k_ids = torch.arange(0, key_size, device=device)
rel_pos_ids = q_ids[:, None] - k_ids[None, :]
if bucket_size > 0 and max_position > 0:
rel_pos_ids = make_log_bucket_position(rel_pos_ids, bucket_size, max_position)
rel_pos_ids = rel_pos_ids.to(torch.long)
rel_pos_ids = rel_pos_ids[:query_size, :]
rel_pos_ids = rel_pos_ids.unsqueeze(0)
return rel_pos_ids
@torch.jit.script
# Copied from transformers.models.deberta.modeling_deberta.c2p_dynamic_expand
def c2p_dynamic_expand(c2p_pos, query_layer, relative_pos):
return c2p_pos.expand([query_layer.size(0), query_layer.size(1), query_layer.size(2), relative_pos.size(-1)])
@torch.jit.script
# Copied from transformers.models.deberta.modeling_deberta.p2c_dynamic_expand
def p2c_dynamic_expand(c2p_pos, query_layer, key_layer):
return c2p_pos.expand([query_layer.size(0), query_layer.size(1), key_layer.size(-2), key_layer.size(-2)])
@torch.jit.script
# Copied from transformers.models.deberta.modeling_deberta.pos_dynamic_expand
def pos_dynamic_expand(pos_index, p2c_att, key_layer):
return pos_index.expand(p2c_att.size()[:2] + (pos_index.size(-2), key_layer.size(-2)))
# Copied from transformers.models.deberta.modeling_deberta.get_mask
def get_mask(input, local_context):
if not isinstance(local_context, DropoutContext):
dropout = local_context
mask = None
else:
dropout = local_context.dropout
dropout *= local_context.scale
mask = local_context.mask if local_context.reuse_mask else None
if dropout > 0 and mask is None:
mask = (1 - torch.empty_like(input).bernoulli_(1 - dropout)).to(torch.bool)
if isinstance(local_context, DropoutContext):
if local_context.mask is None:
local_context.mask = mask
return mask, dropout
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2NoLayerNormConvLayer with Wav2Vec2->SEWD
class SEWDNoLayerNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2LayerNormConvLayer with Wav2Vec2->SEWD
class SEWDLayerNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.layer_norm = nn.LayerNorm(self.out_conv_dim, elementwise_affine=True)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = hidden_states.transpose(-2, -1)
hidden_states = self.layer_norm(hidden_states)
hidden_states = hidden_states.transpose(-2, -1)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2GroupNormConvLayer with Wav2Vec2->SEWD
class SEWDGroupNormConvLayer(nn.Module):
def __init__(self, config, layer_id=0):
super().__init__()
self.in_conv_dim = config.conv_dim[layer_id - 1] if layer_id > 0 else 1
self.out_conv_dim = config.conv_dim[layer_id]
self.conv = nn.Conv1d(
self.in_conv_dim,
self.out_conv_dim,
kernel_size=config.conv_kernel[layer_id],
stride=config.conv_stride[layer_id],
bias=config.conv_bias,
)
self.activation = ACT2FN[config.feat_extract_activation]
self.layer_norm = nn.GroupNorm(num_groups=self.out_conv_dim, num_channels=self.out_conv_dim, affine=True)
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.layer_norm(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.sew.modeling_sew.SEWPositionalConvEmbedding with SEW->SEWD
class SEWDPositionalConvEmbedding(nn.Module):
def __init__(self, config):
super().__init__()
self.conv = nn.Conv1d(
config.hidden_size,
config.hidden_size,
kernel_size=config.num_conv_pos_embeddings,
padding=config.num_conv_pos_embeddings // 2,
groups=config.num_conv_pos_embedding_groups,
stride=config.squeeze_factor,
)
if is_deepspeed_zero3_enabled():
import deepspeed
with deepspeed.zero.GatheredParameters(self.conv.weight, modifier_rank=0):
self.conv = nn.utils.weight_norm(self.conv, name="weight", dim=2)
deepspeed.zero.register_external_parameter(self, self.conv.weight_v)
deepspeed.zero.register_external_parameter(self, self.conv.weight_g)
else:
self.conv = nn.utils.weight_norm(self.conv, name="weight", dim=2)
self.padding = SEWDSamePadLayer(config.num_conv_pos_embeddings)
self.activation = ACT2FN[config.feat_extract_activation]
def forward(self, hidden_states):
hidden_states = self.conv(hidden_states)
hidden_states = self.padding(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2SamePadLayer with Wav2Vec2->SEW
class SEWDSamePadLayer(nn.Module):
def __init__(self, num_conv_pos_embeddings):
super().__init__()
self.num_pad_remove = 1 if num_conv_pos_embeddings % 2 == 0 else 0
def forward(self, hidden_states):
if self.num_pad_remove > 0:
hidden_states = hidden_states[:, :, : -self.num_pad_remove]
return hidden_states
# Copied from transformers.models.sew.modeling_sew.SEWUpsampling with SEW->SEWD
class SEWDUpsampling(nn.Module):
def __init__(self, config):
super().__init__()
self.projection = nn.Linear(config.hidden_size, config.hidden_size * config.squeeze_factor)
self.activation = ACT2FN[config.feat_extract_activation]
self.squeeze_factor = config.squeeze_factor
def forward(self, hidden_states):
hidden_states = self.projection(hidden_states)
hidden_states = self.activation(hidden_states)
if self.squeeze_factor > 1:
# transform embedding channels to sequence length
bsz, src_len, src_embed_dim = hidden_states.size()
tgt_len = src_len * self.squeeze_factor
tgt_embed_dim = src_embed_dim // self.squeeze_factor
hidden_states = hidden_states.reshape(bsz, src_len, self.squeeze_factor, tgt_embed_dim)
hidden_states = hidden_states.reshape(bsz, tgt_len, tgt_embed_dim)
return hidden_states
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2FeatureEncoder with Wav2Vec2->SEWD
class SEWDFeatureEncoder(nn.Module):
"""Construct the features from raw audio waveform"""
def __init__(self, config):
super().__init__()
if config.feat_extract_norm == "group":
conv_layers = [SEWDGroupNormConvLayer(config, layer_id=0)] + [
SEWDNoLayerNormConvLayer(config, layer_id=i + 1) for i in range(config.num_feat_extract_layers - 1)
]
elif config.feat_extract_norm == "layer":
conv_layers = [SEWDLayerNormConvLayer(config, layer_id=i) for i in range(config.num_feat_extract_layers)]
else:
raise ValueError(
f"`config.feat_extract_norm` is {config.feat_extract_norm}, but has to be one of ['group', 'layer']"
)
self.conv_layers = nn.ModuleList(conv_layers)
self.gradient_checkpointing = False
self._requires_grad = True
def _freeze_parameters(self):
for param in self.parameters():
param.requires_grad = False
self._requires_grad = False
def forward(self, input_values):
hidden_states = input_values[:, None]
# make sure hidden_states require grad for gradient_checkpointing
if self._requires_grad and self.training:
hidden_states.requires_grad = True
for conv_layer in self.conv_layers:
if self._requires_grad and self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs)
return custom_forward
hidden_states = torch.utils.checkpoint.checkpoint(
create_custom_forward(conv_layer),
hidden_states,
)
else:
hidden_states = conv_layer(hidden_states)
return hidden_states
class SEWDFeatureExtractor(SEWDFeatureEncoder):
def __init__(self, config):
super().__init__(config)
warnings.warn(
f"The class `{self.__class__.__name__}` has been depreciated "
"and will be removed in Transformers v5. "
f"Use `{self.__class__.__bases__[0].__name__}` instead.",
FutureWarning,
)
# Copied from transformers.models.deberta.modeling_deberta.ContextPooler
class ContextPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.pooler_hidden_size, config.pooler_hidden_size)
self.dropout = StableDropout(config.pooler_dropout)
self.config = config
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
context_token = hidden_states[:, 0]
context_token = self.dropout(context_token)
pooled_output = self.dense(context_token)
pooled_output = ACT2FN[self.config.pooler_hidden_act](pooled_output)
return pooled_output
@property
def output_dim(self):
return self.config.hidden_size
# Copied from transformers.models.deberta.modeling_deberta.XSoftmax with deberta->deberta_v2
class XSoftmax(torch.autograd.Function):
"""
Masked Softmax which is optimized for saving memory
Args:
input (`torch.tensor`): The input tensor that will apply softmax.
mask (`torch.IntTensor`):
The mask matrix where 0 indicate that element will be ignored in the softmax calculation.
dim (int): The dimension that will apply softmax
Example:
```python
>>> import torch
>>> from transformers.models.deberta_v2.modeling_deberta_v2 import XSoftmax
>>> # Make a tensor
>>> x = torch.randn([4, 20, 100])
>>> # Create a mask
>>> mask = (x > 0).int()
>>> # Specify the dimension to apply softmax
>>> dim = -1
>>> y = XSoftmax.apply(x, mask, dim)
```"""
@staticmethod
def forward(self, input, mask, dim):
self.dim = dim
rmask = ~(mask.to(torch.bool))
output = input.masked_fill(rmask, torch.tensor(torch.finfo(input.dtype).min))
output = torch.softmax(output, self.dim)
output.masked_fill_(rmask, 0)
self.save_for_backward(output)
return output
@staticmethod
def backward(self, grad_output):
(output,) = self.saved_tensors
inputGrad = softmax_backward_data(self, grad_output, output, self.dim, output)
return inputGrad, None, None
@staticmethod
def symbolic(g, self, mask, dim):
import torch.onnx.symbolic_helper as sym_help
from torch.onnx.symbolic_opset9 import masked_fill, softmax
mask_cast_value = g.op("Cast", mask, to_i=sym_help.cast_pytorch_to_onnx["Long"])
r_mask = g.op(
"Cast",
g.op("Sub", g.op("Constant", value_t=torch.tensor(1, dtype=torch.int64)), mask_cast_value),
to_i=sym_help.cast_pytorch_to_onnx["Bool"],
)
output = masked_fill(
g, self, r_mask, g.op("Constant", value_t=torch.tensor(torch.finfo(self.type().dtype()).min))
)
output = softmax(g, output, dim)
return masked_fill(g, output, r_mask, g.op("Constant", value_t=torch.tensor(0, dtype=torch.bool)))
# Copied from transformers.models.deberta.modeling_deberta.DropoutContext
class DropoutContext(object):
def __init__(self):
self.dropout = 0
self.mask = None
self.scale = 1
self.reuse_mask = True
# Copied from transformers.models.deberta.modeling_deberta.XDropout
class XDropout(torch.autograd.Function):
"""Optimized dropout function to save computation and memory by using mask operation instead of multiplication."""
@staticmethod
def forward(ctx, input, local_ctx):
mask, dropout = get_mask(input, local_ctx)
ctx.scale = 1.0 / (1 - dropout)
if dropout > 0:
ctx.save_for_backward(mask)
return input.masked_fill(mask, 0) * ctx.scale
else:
return input
@staticmethod
def backward(ctx, grad_output):
if ctx.scale > 1:
(mask,) = ctx.saved_tensors
return grad_output.masked_fill(mask, 0) * ctx.scale, None
else:
return grad_output, None
@staticmethod
def symbolic(g: torch._C.Graph, input: torch._C.Value, local_ctx: Union[float, DropoutContext]) -> torch._C.Value:
from torch.onnx import symbolic_opset12
dropout_p = local_ctx
if isinstance(local_ctx, DropoutContext):
dropout_p = local_ctx.dropout
# StableDropout only calls this function when training.
train = True
# TODO: We should check if the opset_version being used to export
# is > 12 here, but there's no good way to do that. As-is, if the
# opset_version < 12, export will fail with a CheckerError.
# Once https://github.com/pytorch/pytorch/issues/78391 is fixed, do something like:
# if opset_version < 12:
# return torch.onnx.symbolic_opset9.dropout(g, input, dropout_p, train)
return symbolic_opset12.dropout(g, input, dropout_p, train)
# Copied from transformers.models.deberta.modeling_deberta.StableDropout
class StableDropout(nn.Module):
"""
Optimized dropout module for stabilizing the training
Args:
drop_prob (float): the dropout probabilities
"""
def __init__(self, drop_prob):
super().__init__()
self.drop_prob = drop_prob
self.count = 0
self.context_stack = None
def forward(self, x):
"""
Call the module
Args:
x (`torch.tensor`): The input tensor to apply dropout
"""
if self.training and self.drop_prob > 0:
return XDropout.apply(x, self.get_context())
return x
def clear_context(self):
self.count = 0
self.context_stack = None
def init_context(self, reuse_mask=True, scale=1):
if self.context_stack is None:
self.context_stack = []
self.count = 0
for c in self.context_stack:
c.reuse_mask = reuse_mask
c.scale = scale
def get_context(self):
if self.context_stack is not None:
if self.count >= len(self.context_stack):
self.context_stack.append(DropoutContext())
ctx = self.context_stack[self.count]
ctx.dropout = self.drop_prob
self.count += 1
return ctx
else:
return self.drop_prob
# Copied from transformers.models.deberta.modeling_deberta.DebertaSelfOutput with DebertaV2->SEWD, DebertaLayerNorm->LayerNorm, hidden_dropout_prob->activation_dropout
class SEWDSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = LayerNorm(config.hidden_size, config.layer_norm_eps)
self.dropout = StableDropout(config.activation_dropout)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.deberta_v2.modeling_deberta_v2.DisentangledSelfAttention with attention_probs_dropout_prob->attention_dropout, hidden_dropout_prob->activation_dropout
class DisentangledSelfAttention(nn.Module):
"""
Disentangled self-attention module
Parameters:
config (`DebertaV2Config`):
A model config class instance with the configuration to build a new model. The schema is similar to
*BertConfig*, for more details, please refer [`DebertaV2Config`]
"""
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
_attention_head_size = config.hidden_size // config.num_attention_heads
self.attention_head_size = getattr(config, "attention_head_size", _attention_head_size)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query_proj = nn.Linear(config.hidden_size, self.all_head_size, bias=True)
self.key_proj = nn.Linear(config.hidden_size, self.all_head_size, bias=True)
self.value_proj = nn.Linear(config.hidden_size, self.all_head_size, bias=True)
self.share_att_key = getattr(config, "share_att_key", False)
self.pos_att_type = config.pos_att_type if config.pos_att_type is not None else []
self.relative_attention = getattr(config, "relative_attention", False)
if self.relative_attention:
self.position_buckets = getattr(config, "position_buckets", -1)
self.max_relative_positions = getattr(config, "max_relative_positions", -1)
if self.max_relative_positions < 1:
self.max_relative_positions = config.max_position_embeddings
self.pos_ebd_size = self.max_relative_positions
if self.position_buckets > 0:
self.pos_ebd_size = self.position_buckets
self.pos_dropout = StableDropout(config.activation_dropout)
if not self.share_att_key:
if "c2p" in self.pos_att_type:
self.pos_key_proj = nn.Linear(config.hidden_size, self.all_head_size, bias=True)
if "p2c" in self.pos_att_type:
self.pos_query_proj = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = StableDropout(config.attention_dropout)
def transpose_for_scores(self, x, attention_heads):
new_x_shape = x.size()[:-1] + (attention_heads, -1)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3).contiguous().view(-1, x.size(1), x.size(-1))
def forward(
self,
hidden_states,
attention_mask,
output_attentions=False,
query_states=None,
relative_pos=None,
rel_embeddings=None,
):
"""
Call the module
Args:
hidden_states (`torch.FloatTensor`):
Input states to the module usually the output from previous layer, it will be the Q,K and V in
*Attention(Q,K,V)*
attention_mask (`torch.BoolTensor`):
An attention mask matrix of shape [*B*, *N*, *N*] where *B* is the batch size, *N* is the maximum
sequence length in which element [i,j] = *1* means the *i* th token in the input can attend to the *j*
th token.
output_attentions (`bool`, optional):
Whether return the attention matrix.
query_states (`torch.FloatTensor`, optional):
The *Q* state in *Attention(Q,K,V)*.
relative_pos (`torch.LongTensor`):
The relative position encoding between the tokens in the sequence. It's of shape [*B*, *N*, *N*] with
values ranging in [*-max_relative_positions*, *max_relative_positions*].
rel_embeddings (`torch.FloatTensor`):
The embedding of relative distances. It's a tensor of shape [\\(2 \\times
\\text{max_relative_positions}\\), *hidden_size*].
"""
if query_states is None:
query_states = hidden_states
query_layer = self.transpose_for_scores(self.query_proj(query_states), self.num_attention_heads)
key_layer = self.transpose_for_scores(self.key_proj(hidden_states), self.num_attention_heads)
value_layer = self.transpose_for_scores(self.value_proj(hidden_states), self.num_attention_heads)
rel_att = None
# Take the dot product between "query" and "key" to get the raw attention scores.
scale_factor = 1
if "c2p" in self.pos_att_type:
scale_factor += 1
if "p2c" in self.pos_att_type:
scale_factor += 1
scale = torch.sqrt(torch.tensor(query_layer.size(-1), dtype=torch.float) * scale_factor)
attention_scores = torch.bmm(query_layer, key_layer.transpose(-1, -2) / scale.to(dtype=query_layer.dtype))
if self.relative_attention:
rel_embeddings = self.pos_dropout(rel_embeddings)
rel_att = self.disentangled_attention_bias(
query_layer, key_layer, relative_pos, rel_embeddings, scale_factor
)
if rel_att is not None:
attention_scores = attention_scores + rel_att
attention_scores = attention_scores
attention_scores = attention_scores.view(
-1, self.num_attention_heads, attention_scores.size(-2), attention_scores.size(-1)
)
# bsz x height x length x dimension
attention_probs = XSoftmax.apply(attention_scores, attention_mask, -1)
attention_probs = self.dropout(attention_probs)
context_layer = torch.bmm(
attention_probs.view(-1, attention_probs.size(-2), attention_probs.size(-1)), value_layer
)
context_layer = (
context_layer.view(-1, self.num_attention_heads, context_layer.size(-2), context_layer.size(-1))
.permute(0, 2, 1, 3)
.contiguous()
)
new_context_layer_shape = context_layer.size()[:-2] + (-1,)
context_layer = context_layer.view(new_context_layer_shape)
if output_attentions:
return (context_layer, attention_probs)
else:
return context_layer
def disentangled_attention_bias(self, query_layer, key_layer, relative_pos, rel_embeddings, scale_factor):
if relative_pos is None:
q = query_layer.size(-2)
relative_pos = build_relative_position(
q,
key_layer.size(-2),
bucket_size=self.position_buckets,
max_position=self.max_relative_positions,
device=query_layer.device,
)
if relative_pos.dim() == 2:
relative_pos = relative_pos.unsqueeze(0).unsqueeze(0)
elif relative_pos.dim() == 3:
relative_pos = relative_pos.unsqueeze(1)
# bsz x height x query x key
elif relative_pos.dim() != 4:
raise ValueError(f"Relative position ids must be of dim 2 or 3 or 4. {relative_pos.dim()}")
att_span = self.pos_ebd_size
relative_pos = relative_pos.long().to(query_layer.device)
rel_embeddings = rel_embeddings[0 : att_span * 2, :].unsqueeze(0)
if self.share_att_key:
pos_query_layer = self.transpose_for_scores(
self.query_proj(rel_embeddings), self.num_attention_heads
).repeat(query_layer.size(0) // self.num_attention_heads, 1, 1)
pos_key_layer = self.transpose_for_scores(self.key_proj(rel_embeddings), self.num_attention_heads).repeat(
query_layer.size(0) // self.num_attention_heads, 1, 1
)
else:
if "c2p" in self.pos_att_type:
pos_key_layer = self.transpose_for_scores(
self.pos_key_proj(rel_embeddings), self.num_attention_heads
).repeat(
query_layer.size(0) // self.num_attention_heads, 1, 1
) # .split(self.all_head_size, dim=-1)
if "p2c" in self.pos_att_type:
pos_query_layer = self.transpose_for_scores(
self.pos_query_proj(rel_embeddings), self.num_attention_heads
).repeat(
query_layer.size(0) // self.num_attention_heads, 1, 1
) # .split(self.all_head_size, dim=-1)
score = 0
# content->position
if "c2p" in self.pos_att_type:
scale = torch.sqrt(torch.tensor(pos_key_layer.size(-1), dtype=torch.float) * scale_factor)
c2p_att = torch.bmm(query_layer, pos_key_layer.transpose(-1, -2))
c2p_pos = torch.clamp(relative_pos + att_span, 0, att_span * 2 - 1)
c2p_att = torch.gather(
c2p_att,
dim=-1,
index=c2p_pos.squeeze(0).expand([query_layer.size(0), query_layer.size(1), relative_pos.size(-1)]),
)
score += c2p_att / scale.to(dtype=c2p_att.dtype)
# position->content
if "p2c" in self.pos_att_type:
scale = torch.sqrt(torch.tensor(pos_query_layer.size(-1), dtype=torch.float) * scale_factor)
if key_layer.size(-2) != query_layer.size(-2):
r_pos = build_relative_position(
key_layer.size(-2),
key_layer.size(-2),
bucket_size=self.position_buckets,
max_position=self.max_relative_positions,
device=query_layer.device,
)
r_pos = r_pos.unsqueeze(0)
else:
r_pos = relative_pos
p2c_pos = torch.clamp(-r_pos + att_span, 0, att_span * 2 - 1)
p2c_att = torch.bmm(key_layer, pos_query_layer.transpose(-1, -2))
p2c_att = torch.gather(
p2c_att,
dim=-1,
index=p2c_pos.squeeze(0).expand([query_layer.size(0), key_layer.size(-2), key_layer.size(-2)]),
).transpose(-1, -2)
score += p2c_att / scale.to(dtype=p2c_att.dtype)
return score
# Copied from transformers.models.deberta.modeling_deberta.DebertaAttention with Deberta->SEWD
class SEWDAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = DisentangledSelfAttention(config)
self.output = SEWDSelfOutput(config)
self.config = config
def forward(
self,
hidden_states,
attention_mask,
output_attentions=False,
query_states=None,
relative_pos=None,
rel_embeddings=None,
):
self_output = self.self(
hidden_states,
attention_mask,
output_attentions,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
)
if output_attentions:
self_output, att_matrix = self_output
if query_states is None:
query_states = hidden_states
attention_output = self.output(self_output, query_states)
if output_attentions:
return (attention_output, att_matrix)
else:
return attention_output
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->SEWD
class SEWDIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.deberta.modeling_deberta.DebertaOutput with DebertaLayerNorm->LayerNorm, hidden_dropout_prob->activation_dropout
class SEWDOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = LayerNorm(config.hidden_size, config.layer_norm_eps)
self.dropout = StableDropout(config.activation_dropout)
self.config = config
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.deberta.modeling_deberta.DebertaLayer with Deberta->SEWD
class SEWDLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = SEWDAttention(config)
self.intermediate = SEWDIntermediate(config)
self.output = SEWDOutput(config)
def forward(
self,
hidden_states,
attention_mask,
query_states=None,
relative_pos=None,
rel_embeddings=None,
output_attentions=False,
):
attention_output = self.attention(
hidden_states,
attention_mask,
output_attentions=output_attentions,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
)
if output_attentions:
attention_output, att_matrix = attention_output
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
if output_attentions:
return (layer_output, att_matrix)
else:
return layer_output
# Copied from transformers.models.deberta_v2.modeling_deberta_v2.ConvLayer
class ConvLayer(nn.Module):
def __init__(self, config):
super().__init__()
kernel_size = getattr(config, "conv_kernel_size", 3)
groups = getattr(config, "conv_groups", 1)
self.conv_act = getattr(config, "conv_act", "tanh")
self.conv = nn.Conv1d(
config.hidden_size, config.hidden_size, kernel_size, padding=(kernel_size - 1) // 2, groups=groups
)
self.LayerNorm = LayerNorm(config.hidden_size, config.layer_norm_eps)
self.dropout = StableDropout(config.hidden_dropout_prob)
self.config = config
def forward(self, hidden_states, residual_states, input_mask):
out = self.conv(hidden_states.permute(0, 2, 1).contiguous()).permute(0, 2, 1).contiguous()
rmask = (1 - input_mask).bool()
out.masked_fill_(rmask.unsqueeze(-1).expand(out.size()), 0)
out = ACT2FN[self.conv_act](self.dropout(out))
layer_norm_input = residual_states + out
output = self.LayerNorm(layer_norm_input).to(layer_norm_input)
if input_mask is None:
output_states = output
else:
if input_mask.dim() != layer_norm_input.dim():
if input_mask.dim() == 4:
input_mask = input_mask.squeeze(1).squeeze(1)
input_mask = input_mask.unsqueeze(2)
input_mask = input_mask.to(output.dtype)
output_states = output * input_mask
return output_states
# Copied from transformers.models.deberta_v2.modeling_deberta_v2.DebertaV2Encoder with DebertaV2->SEWD
class SEWDTransformerEncoder(nn.Module):
"""Modified BertEncoder with relative position bias support"""
def __init__(self, config):
super().__init__()
self.layer = nn.ModuleList([SEWDLayer(config) for _ in range(config.num_hidden_layers)])
self.relative_attention = getattr(config, "relative_attention", False)
if self.relative_attention:
self.max_relative_positions = getattr(config, "max_relative_positions", -1)
if self.max_relative_positions < 1:
self.max_relative_positions = config.max_position_embeddings
self.position_buckets = getattr(config, "position_buckets", -1)
pos_ebd_size = self.max_relative_positions * 2
if self.position_buckets > 0:
pos_ebd_size = self.position_buckets * 2
self.rel_embeddings = nn.Embedding(pos_ebd_size, config.hidden_size)
self.norm_rel_ebd = [x.strip() for x in getattr(config, "norm_rel_ebd", "none").lower().split("|")]
if "layer_norm" in self.norm_rel_ebd:
self.LayerNorm = LayerNorm(config.hidden_size, config.layer_norm_eps, elementwise_affine=True)
self.conv = ConvLayer(config) if getattr(config, "conv_kernel_size", 0) > 0 else None
self.gradient_checkpointing = False
def get_rel_embedding(self):
rel_embeddings = self.rel_embeddings.weight if self.relative_attention else None
if rel_embeddings is not None and ("layer_norm" in self.norm_rel_ebd):
rel_embeddings = self.LayerNorm(rel_embeddings)
return rel_embeddings
def get_attention_mask(self, attention_mask):
if attention_mask.dim() <= 2:
extended_attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
attention_mask = extended_attention_mask * extended_attention_mask.squeeze(-2).unsqueeze(-1)
elif attention_mask.dim() == 3:
attention_mask = attention_mask.unsqueeze(1)
return attention_mask
def get_rel_pos(self, hidden_states, query_states=None, relative_pos=None):
if self.relative_attention and relative_pos is None:
q = query_states.size(-2) if query_states is not None else hidden_states.size(-2)
relative_pos = build_relative_position(
q,
hidden_states.size(-2),
bucket_size=self.position_buckets,
max_position=self.max_relative_positions,
device=hidden_states.device,
)
return relative_pos
def forward(
self,
hidden_states,
attention_mask,
output_hidden_states=True,
output_attentions=False,
query_states=None,
relative_pos=None,
return_dict=True,
):
if attention_mask.dim() <= 2:
input_mask = attention_mask
else:
input_mask = attention_mask.sum(-2) > 0
attention_mask = self.get_attention_mask(attention_mask)
relative_pos = self.get_rel_pos(hidden_states, query_states, relative_pos)
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
if isinstance(hidden_states, Sequence):
next_kv = hidden_states[0]
else:
next_kv = hidden_states
rel_embeddings = self.get_rel_embedding()
output_states = next_kv
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (output_states,)
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
output_states = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
next_kv,
attention_mask,
query_states,
relative_pos,
rel_embeddings,
)
else:
output_states = layer_module(
next_kv,
attention_mask,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
output_attentions=output_attentions,
)
if output_attentions:
output_states, att_m = output_states
if i == 0 and self.conv is not None:
output_states = self.conv(hidden_states, output_states, input_mask)
if query_states is not None:
query_states = output_states
if isinstance(hidden_states, Sequence):
next_kv = hidden_states[i + 1] if i + 1 < len(self.layer) else None
else:
next_kv = output_states
if output_attentions:
all_attentions = all_attentions + (att_m,)
if output_hidden_states:
all_hidden_states = all_hidden_states + (output_states,)
if not return_dict:
return tuple(v for v in [output_states, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=output_states, hidden_states=all_hidden_states, attentions=all_attentions
)
class SEWDEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.pos_conv_embed = SEWDPositionalConvEmbedding(config)
self.pool = nn.AvgPool1d(config.squeeze_factor, config.squeeze_factor)
self.encoder = SEWDTransformerEncoder(config)
self.upsample = SEWDUpsampling(config)
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.tensor,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
max_encoder_length = hidden_states.shape[1] // self.config.squeeze_factor
if attention_mask is None:
attention_mask = torch.ones(
(hidden_states.shape[0], max_encoder_length), dtype=torch.long, device=hidden_states.device
)
else:
# make sure padded tokens output 0
hidden_states[~attention_mask.bool()] = 0.0
input_lengths = (attention_mask.long()).sum(-1)
# apply pooling formula to get real output_lengths
output_lengths = input_lengths // self.config.squeeze_factor
attention_ids = (
torch.arange(0, max_encoder_length, device=output_lengths.device)
.view(1, -1)
.expand(output_lengths.shape[0], -1)
)
attention_mask = (attention_ids < output_lengths.view(-1, 1)).long()
n_input_timesteps = hidden_states.shape[1]
hidden_states = hidden_states.transpose(1, 2)
position_embeddings = self.pos_conv_embed(hidden_states)
pooled_hidden_states = self.pool(hidden_states)
min_length = min(position_embeddings.size(-1), pooled_hidden_states.size(-1))
hidden_states = pooled_hidden_states[..., :min_length] + position_embeddings[..., :min_length]
hidden_states = hidden_states.transpose(1, 2)
encoder_outputs = self.encoder(hidden_states, attention_mask, output_hidden_states, output_attentions)
hidden_states = self.upsample(encoder_outputs.last_hidden_state)
if hidden_states.shape[1] < n_input_timesteps:
hidden_states = nn.functional.pad(hidden_states, (0, 0, 0, n_input_timesteps - hidden_states.shape[1]))
if not return_dict:
return tuple(
v for v in [hidden_states, encoder_outputs.hidden_states, encoder_outputs.attentions] if v is not None
)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class SEWDPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = SEWDConfig
base_model_prefix = "sew-d"
main_input_name = "input_values"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, SEWDPositionalConvEmbedding):
nn.init.normal_(
module.conv.weight,
mean=0,
std=2 * math.sqrt(1 / (module.conv.kernel_size[0] * module.conv.in_channels)),
)
nn.init.constant_(module.conv.bias, 0)
elif isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, (nn.LayerNorm, nn.GroupNorm)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, nn.Conv1d):
if is_deepspeed_zero3_enabled():
import deepspeed
if hasattr(module, "weight_v") and hasattr(module, "weight_g"):
with deepspeed.zero.GatheredParameters([module.weight_v, module.weight_g], modifier_rank=0):
nn.init.kaiming_normal_(module.weight.data)
else:
with deepspeed.zero.GatheredParameters(module.weight, modifier_rank=0):
nn.init.kaiming_normal_(module.weight.data)
else:
nn.init.kaiming_normal_(module.weight.data)
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
if isinstance(module, (nn.Linear, nn.Conv1d)) and module.bias is not None:
module.bias.data.zero_()
def _get_feat_extract_output_lengths(self, input_lengths: Union[torch.LongTensor, int]):
"""
Computes the output length of the convolutional layers
"""
def _conv_out_length(input_length, kernel_size, stride):
# 1D convolutional layer output length formula taken
# from https://pytorch.org/docs/stable/generated/torch.nn.Conv1d.html
return torch.div(input_length - kernel_size, stride, rounding_mode="floor") + 1
for kernel_size, stride in zip(self.config.conv_kernel, self.config.conv_stride):
input_lengths = _conv_out_length(input_lengths, kernel_size, stride)
return input_lengths
def _get_feature_vector_attention_mask(self, feature_vector_length: int, attention_mask: torch.LongTensor):
output_lengths = self._get_feat_extract_output_lengths(attention_mask.sum(-1)).to(torch.long)
batch_size = attention_mask.shape[0]
attention_mask = torch.zeros(
(batch_size, feature_vector_length), dtype=attention_mask.dtype, device=attention_mask.device
)
# these two operations makes sure that all values before the output lengths idxs are attended to
attention_mask[(torch.arange(attention_mask.shape[0], device=attention_mask.device), output_lengths - 1)] = 1
attention_mask = attention_mask.flip([-1]).cumsum(-1).flip([-1]).bool()
return attention_mask
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, SEWDTransformerEncoder):
module.gradient_checkpointing = value
SEWD_START_DOCSTRING = r"""
SEW-D was proposed in [Performance-Efficiency Trade-offs in Unsupervised Pre-training for Speech
Recognition](https://arxiv.org/abs/2109.06870) by Felix Wu, Kwangyoun Kim, Jing Pan, Kyu Han, Kilian Q. Weinberger,
Yoav Artzi.
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving etc.).
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`SEWDConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
SEWD_INPUTS_DOCSTRING = r"""
Args:
input_values (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Float values of input raw speech waveform. Values can be obtained by loading a `.flac` or `.wav` audio file
into an array of type `List[float]` or a `numpy.ndarray`, *e.g.* via the soundfile library (`pip install
soundfile`). To prepare the array into `input_values`, the [`AutoProcessor`] should be used for padding and
conversion into a tensor of type `torch.FloatTensor`. See [`Wav2Vec2Processor.__call__`] for details.
attention_mask (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing convolution and attention on padding token indices. Mask values selected in `[0,
1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare SEW-D Model transformer outputting raw hidden-states without any specific head on top.",
SEWD_START_DOCSTRING,
)
# Copied from transformers.models.sew.modeling_sew.SEWModel with SEW->SEWD, layer_norm_eps->feature_layer_norm_eps
class SEWDModel(SEWDPreTrainedModel):
def __init__(self, config: SEWDConfig):
super().__init__(config)
self.config = config
self.feature_extractor = SEWDFeatureEncoder(config)
self.layer_norm = nn.LayerNorm(config.conv_dim[-1], eps=config.feature_layer_norm_eps)
self.project_features = config.conv_dim[-1] != config.hidden_size
if self.project_features:
self.feature_projection = nn.Linear(config.conv_dim[-1], config.hidden_size)
self.feature_dropout = nn.Dropout(config.feat_proj_dropout)
if config.mask_time_prob > 0.0 or config.mask_feature_prob > 0.0:
self.masked_spec_embed = nn.Parameter(torch.FloatTensor(config.hidden_size).uniform_())
self.encoder = SEWDEncoder(config)
# Initialize weights and apply final processing
self.post_init()
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2Model._mask_hidden_states
def _mask_hidden_states(
self,
hidden_states: torch.FloatTensor,
mask_time_indices: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
):
"""
Masks extracted features along time axis and/or along feature axis according to
[SpecAugment](https://arxiv.org/abs/1904.08779).
"""
# `config.apply_spec_augment` can set masking to False
if not getattr(self.config, "apply_spec_augment", True):
return hidden_states
# generate indices & apply SpecAugment along time axis
batch_size, sequence_length, hidden_size = hidden_states.size()
if mask_time_indices is not None:
# apply SpecAugment along time axis with given mask_time_indices
hidden_states[mask_time_indices] = self.masked_spec_embed.to(hidden_states.dtype)
elif self.config.mask_time_prob > 0 and self.training:
mask_time_indices = _compute_mask_indices(
(batch_size, sequence_length),
mask_prob=self.config.mask_time_prob,
mask_length=self.config.mask_time_length,
attention_mask=attention_mask,
min_masks=self.config.mask_time_min_masks,
)
mask_time_indices = torch.tensor(mask_time_indices, device=hidden_states.device, dtype=torch.bool)
hidden_states[mask_time_indices] = self.masked_spec_embed.to(hidden_states.dtype)
if self.config.mask_feature_prob > 0 and self.training:
# generate indices & apply SpecAugment along feature axis
mask_feature_indices = _compute_mask_indices(
(batch_size, hidden_size),
mask_prob=self.config.mask_feature_prob,
mask_length=self.config.mask_feature_length,
min_masks=self.config.mask_feature_min_masks,
)
mask_feature_indices = torch.tensor(mask_feature_indices, device=hidden_states.device, dtype=torch.bool)
mask_feature_indices = mask_feature_indices[:, None].expand(-1, sequence_length, -1)
hidden_states[mask_feature_indices] = 0
return hidden_states
@add_start_docstrings_to_model_forward(SEWD_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
mask_time_indices: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
extract_features = self.feature_extractor(input_values)
extract_features = extract_features.transpose(1, 2)
extract_features = self.layer_norm(extract_features)
if self.project_features:
extract_features = self.feature_projection(extract_features)
hidden_states = self.feature_dropout(extract_features)
if attention_mask is not None:
# compute reduced attention_mask corresponding to feature vectors
attention_mask = self._get_feature_vector_attention_mask(hidden_states.shape[1], attention_mask)
hidden_states = self._mask_hidden_states(hidden_states, mask_time_indices=mask_time_indices)
encoder_outputs = self.encoder(
hidden_states,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = encoder_outputs[0]
if not return_dict:
return (hidden_states,) + encoder_outputs[1:]
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"""SEW-D Model with a `language modeling` head on top for Connectionist Temporal Classification (CTC).""",
SEWD_START_DOCSTRING,
)
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2ForCTC with Wav2Vec2->SEWD, wav2vec2->sew_d, WAV_2_VEC_2->SEWD
class SEWDForCTC(SEWDPreTrainedModel):
def __init__(self, config, target_lang: Optional[str] = None):
super().__init__(config)
self.sew_d = SEWDModel(config)
self.dropout = nn.Dropout(config.final_dropout)
self.target_lang = target_lang
if config.vocab_size is None:
raise ValueError(
f"You are trying to instantiate {self.__class__} with a configuration that "
"does not define the vocabulary size of the language model head. Please "
"instantiate the model as follows: `SEWDForCTC.from_pretrained(..., vocab_size=vocab_size)`. "
"or define `vocab_size` of your model's configuration."
)
output_hidden_size = (
config.output_hidden_size if hasattr(config, "add_adapter") and config.add_adapter else config.hidden_size
)
self.lm_head = nn.Linear(output_hidden_size, config.vocab_size)
# Initialize weights and apply final processing
self.post_init()
def tie_weights(self):
"""
This method overwrites [`~PreTrainedModel.tie_weights`] so that adapter weights can be correctly loaded when
passing `target_lang=...` to `from_pretrained(...)`.
This method is **not** supposed to be called by the user and is prone to be changed in the future.
"""
# Note that `tie_weights` is usually used to tie input and output embedding weights. The method is re-purposed to
# correctly load adapter layers for SEWD so that we do not have to introduce a new API to
# [`PreTrainedModel`]. While slightly hacky, SEWD never has to tie input and output embeddings, so that it is
# ok to repurpose this function here.
target_lang = self.target_lang
if target_lang is not None and getattr(self.config, "adapter_attn_dim", None) is None:
raise ValueError(f"Cannot pass `target_lang`: {target_lang} if `config.adapter_attn_dim` is not defined.")
elif target_lang is None and getattr(self.config, "adapter_attn_dim", None) is not None:
logger.info("By default `target_lang` is set to 'eng'.")
elif target_lang is not None:
self.load_adapter(target_lang, force_load=True)
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5."
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.sew_d.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.sew_d.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(SEWD_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_CTC_EXPECTED_OUTPUT,
expected_loss=_CTC_EXPECTED_LOSS,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, CausalLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, target_length)`, *optional*):
Labels for connectionist temporal classification. Note that `target_length` has to be smaller or equal to
the sequence length of the output logits. Indices are selected in `[-100, 0, ..., config.vocab_size - 1]`.
All labels set to `-100` are ignored (masked), the loss is only computed for labels in `[0, ...,
config.vocab_size - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.sew_d(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states)
logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
if labels.max() >= self.config.vocab_size:
raise ValueError(f"Label values must be <= vocab_size: {self.config.vocab_size}")
# retrieve loss input_lengths from attention_mask
attention_mask = (
attention_mask if attention_mask is not None else torch.ones_like(input_values, dtype=torch.long)
)
input_lengths = self._get_feat_extract_output_lengths(attention_mask.sum(-1)).to(torch.long)
# assuming that padded tokens are filled with -100
# when not being attended to
labels_mask = labels >= 0
target_lengths = labels_mask.sum(-1)
flattened_targets = labels.masked_select(labels_mask)
# ctc_loss doesn't support fp16
log_probs = nn.functional.log_softmax(logits, dim=-1, dtype=torch.float32).transpose(0, 1)
with torch.backends.cudnn.flags(enabled=False):
loss = nn.functional.ctc_loss(
log_probs,
flattened_targets,
input_lengths,
target_lengths,
blank=self.config.pad_token_id,
reduction=self.config.ctc_loss_reduction,
zero_infinity=self.config.ctc_zero_infinity,
)
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutput(
loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions
)
@add_start_docstrings(
"""
SEWD Model with a sequence classification head on top (a linear layer over the pooled output) for tasks like SUPERB
Keyword Spotting.
""",
SEWD_START_DOCSTRING,
)
# Copied from transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2ForSequenceClassification with Wav2Vec2->SEWD, wav2vec2->sew_d, WAV_2_VEC_2->SEWD
class SEWDForSequenceClassification(SEWDPreTrainedModel):
def __init__(self, config):
super().__init__(config)
if hasattr(config, "add_adapter") and config.add_adapter:
raise ValueError(
"Sequence classification does not support the use of SEWD adapters (config.add_adapter=True)"
)
self.sew_d = SEWDModel(config)
num_layers = config.num_hidden_layers + 1 # transformer layers + input embeddings
if config.use_weighted_layer_sum:
self.layer_weights = nn.Parameter(torch.ones(num_layers) / num_layers)
self.projector = nn.Linear(config.hidden_size, config.classifier_proj_size)
self.classifier = nn.Linear(config.classifier_proj_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
def freeze_feature_extractor(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameters will
not be updated during training.
"""
warnings.warn(
"The method `freeze_feature_extractor` is deprecated and will be removed in Transformers v5."
"Please use the equivalent `freeze_feature_encoder` method instead.",
FutureWarning,
)
self.freeze_feature_encoder()
def freeze_feature_encoder(self):
"""
Calling this function will disable the gradient computation for the feature encoder so that its parameter will
not be updated during training.
"""
self.sew_d.feature_extractor._freeze_parameters()
def freeze_base_model(self):
"""
Calling this function will disable the gradient computation for the base model so that its parameters will not
be updated during training. Only the classification head will be updated.
"""
for param in self.sew_d.parameters():
param.requires_grad = False
@add_start_docstrings_to_model_forward(SEWD_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_SEQ_CLASS_CHECKPOINT,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
modality="audio",
expected_output=_SEQ_CLASS_EXPECTED_OUTPUT,
expected_loss=_SEQ_CLASS_EXPECTED_LOSS,
)
def forward(
self,
input_values: Optional[torch.Tensor],
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.Tensor] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = True if self.config.use_weighted_layer_sum else output_hidden_states
outputs = self.sew_d(
input_values,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if self.config.use_weighted_layer_sum:
hidden_states = outputs[_HIDDEN_STATES_START_POSITION]
hidden_states = torch.stack(hidden_states, dim=1)
norm_weights = nn.functional.softmax(self.layer_weights, dim=-1)
hidden_states = (hidden_states * norm_weights.view(-1, 1, 1)).sum(dim=1)
else:
hidden_states = outputs[0]
hidden_states = self.projector(hidden_states)
if attention_mask is None:
pooled_output = hidden_states.mean(dim=1)
else:
padding_mask = self._get_feature_vector_attention_mask(hidden_states.shape[1], attention_mask)
hidden_states[~padding_mask] = 0.0
pooled_output = hidden_states.sum(dim=1) / padding_mask.sum(dim=1).view(-1, 1)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[_HIDDEN_STATES_START_POSITION:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 74,626 | 40.831278 | 184 | py |
transformers | transformers-main/src/transformers/models/sew_d/convert_sew_d_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert SEW checkpoint."""
import argparse
import json
import os
import fairseq
import torch
from fairseq.data import Dictionary
# Register SEW's fairseq modules
from sew_asapp import tasks # noqa: F401
from transformers import (
SEWDConfig,
SEWDForCTC,
SEWDModel,
Wav2Vec2CTCTokenizer,
Wav2Vec2FeatureExtractor,
Wav2Vec2Processor,
logging,
)
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
MAPPING = {
"post_extract_proj": "feature_projection",
"encoder.pos_conv.0": "encoder.pos_conv_embed.conv",
"attention.self.query_proj": "encoder.encoder.layer.*.attention.self.query_proj",
"attention.self.key_proj": "encoder.encoder.layer.*.attention.self.key_proj",
"attention.self.value_proj": "encoder.encoder.layer.*.attention.self.value_proj",
"attention.output.dense": "encoder.encoder.layer.*.attention.output.dense",
"attention.output.LayerNorm": "encoder.encoder.layer.*.attention.output.LayerNorm",
"intermediate.dense": "encoder.encoder.layer.*.intermediate.dense",
"output.dense": "encoder.encoder.layer.*.output.dense",
"output.LayerNorm": "encoder.encoder.layer.*.output.LayerNorm",
"encoder.encoder.rel_embeddings": "encoder.encoder.rel_embeddings",
"encoder.encoder.LayerNorm": "encoder.encoder.LayerNorm",
"encoder.upsample.0": "encoder.upsample.projection",
"encoder.layer_norm": "encoder.layer_norm",
"w2v_model.layer_norm": "layer_norm",
"w2v_encoder.proj": "lm_head",
"mask_emb": "masked_spec_embed",
}
def set_recursively(hf_pointer, key, value, full_name, weight_type):
for attribute in key.split("."):
hf_pointer = getattr(hf_pointer, attribute)
if weight_type is not None:
hf_shape = getattr(hf_pointer, weight_type).shape
else:
hf_shape = hf_pointer.shape
assert hf_shape == value.shape, (
f"Shape of hf {key + '.' + weight_type if weight_type is not None else ''} is {hf_shape}, but should be"
f" {value.shape} for {full_name}"
)
if weight_type == "weight":
hf_pointer.weight.data = value
elif weight_type == "weight_g":
hf_pointer.weight_g.data = value
elif weight_type == "weight_v":
hf_pointer.weight_v.data = value
elif weight_type == "bias":
hf_pointer.bias.data = value
else:
hf_pointer.data = value
logger.info(f"{key + '.' + weight_type if weight_type is not None else ''} was initialized from {full_name}.")
def recursively_load_weights(fairseq_model, hf_model, is_finetuned):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.sew_d.feature_extractor if is_finetuned else hf_model.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
mapped_key = "sew_d." + mapped_key if (is_finetuned and mapped_key != "lm_head") else mapped_key
if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
if not layer_index.isnumeric():
continue
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "weight" in name:
weight_type = "weight"
elif "bias" in name:
weight_type = "bias"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
def load_conv_layer(full_name, value, feature_extractor, unused_weights, use_group_norm):
name = full_name.split("conv_layers.")[-1]
items = name.split(".")
layer_id = int(items[0])
type_id = int(items[1])
if type_id == 0:
if "bias" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].conv.bias.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.bias.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.bias.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].conv.weight.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor.conv_layers[layer_id].conv.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].conv.weight.data = value
logger.info(f"Feat extract conv layer {layer_id} was initialized from {full_name}.")
elif (type_id == 2 and not use_group_norm) or (type_id == 2 and layer_id == 0 and use_group_norm):
if "bias" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].layer_norm.bias.data.shape, (
f"{full_name} has size {value.shape}, but {feature_extractor[layer_id].layer_norm.bias.data.shape} was"
" found."
)
feature_extractor.conv_layers[layer_id].layer_norm.bias.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
elif "weight" in name:
assert value.shape == feature_extractor.conv_layers[layer_id].layer_norm.weight.data.shape, (
f"{full_name} has size {value.shape}, but"
f" {feature_extractor[layer_id].layer_norm.weight.data.shape} was found."
)
feature_extractor.conv_layers[layer_id].layer_norm.weight.data = value
logger.info(f"Feat extract layer norm weight of layer {layer_id} was initialized from {full_name}.")
else:
unused_weights.append(full_name)
def convert_config(model, is_finetuned):
config = SEWDConfig()
if is_finetuned:
fs_config = model.w2v_encoder.w2v_model.cfg
else:
fs_config = model.cfg
config.conv_bias = fs_config.conv_bias
conv_layers = eval(fs_config.conv_feature_layers)
config.conv_dim = [x[0] for x in conv_layers]
config.conv_kernel = [x[1] for x in conv_layers]
config.conv_stride = [x[2] for x in conv_layers]
config.feat_extract_activation = "gelu"
config.feat_extract_norm = "layer" if fs_config.extractor_mode == "layer_norm" else "group"
config.final_dropout = 0.0
config.hidden_act = fs_config.activation_fn.name
config.hidden_size = fs_config.encoder_embed_dim
config.initializer_range = 0.02
config.intermediate_size = fs_config.encoder_ffn_embed_dim
config.layer_norm_eps = 1e-5
config.layerdrop = fs_config.encoder_layerdrop
config.num_attention_heads = fs_config.encoder_attention_heads
config.num_conv_pos_embedding_groups = fs_config.conv_pos_groups
config.num_conv_pos_embeddings = fs_config.conv_pos
config.num_feat_extract_layers = len(conv_layers)
config.num_hidden_layers = fs_config.encoder_layers
config.squeeze_factor = fs_config.squeeze_factor
# DeBERTa-specific parameters:
config.max_position_embeddings = fs_config.max_position_embeddings
config.position_buckets = fs_config.position_buckets
config.share_att_key = fs_config.share_att_key
config.relative_attention = fs_config.relative_attention
config.position_biased_input = fs_config.position_biased_input
config.pos_att_type = tuple(fs_config.pos_att_type.split("|"))
config.norm_rel_ebd = fs_config.norm_rel_ebd
# take care of any params that are overridden by the Wav2VecCtc model
if is_finetuned:
fs_config = model.cfg
config.final_dropout = fs_config.final_dropout
config.layerdrop = fs_config.layerdrop
config.activation_dropout = fs_config.activation_dropout
config.apply_spec_augment = fs_config.mask_prob > 0 or fs_config.mask_channel_prob > 0
config.attention_dropout = fs_config.attention_dropout
config.feat_proj_dropout = fs_config.dropout_input
config.hidden_dropout = fs_config.dropout
config.mask_feature_length = fs_config.mask_channel_length
config.mask_feature_prob = fs_config.mask_channel_prob
config.mask_time_length = fs_config.mask_length
config.mask_time_prob = fs_config.mask_prob
config.feature_extractor_type = "Wav2Vec2FeatureExtractor"
config.tokenizer_class = "Wav2Vec2CTCTokenizer"
return config
@torch.no_grad()
def convert_sew_checkpoint(
checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if is_finetuned:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path], arg_overrides={"data": "/".join(dict_path.split("/")[:-1])}
)
else:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task([checkpoint_path])
if config_path is not None:
config = SEWDConfig.from_pretrained(config_path)
else:
config = convert_config(model[0], is_finetuned)
model = model[0].eval()
return_attention_mask = True if config.feat_extract_norm == "layer" else False
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=return_attention_mask,
)
if is_finetuned:
if dict_path:
target_dict = Dictionary.load(dict_path)
# important change bos & pad token id since CTC symbol is <pad> and
# not <s> as in fairseq
target_dict.indices[target_dict.bos_word] = target_dict.pad_index
target_dict.indices[target_dict.pad_word] = target_dict.bos_index
config.bos_token_id = target_dict.pad_index
config.pad_token_id = target_dict.bos_index
config.eos_token_id = target_dict.eos_index
config.vocab_size = len(target_dict.symbols)
vocab_path = os.path.join(pytorch_dump_folder_path, "vocab.json")
if not os.path.isdir(pytorch_dump_folder_path):
logger.error("--pytorch_dump_folder_path ({}) should be a directory".format(pytorch_dump_folder_path))
return
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
with open(vocab_path, "w", encoding="utf-8") as vocab_handle:
json.dump(target_dict.indices, vocab_handle)
tokenizer = Wav2Vec2CTCTokenizer(
vocab_path,
unk_token=target_dict.unk_word,
pad_token=target_dict.pad_word,
bos_token=target_dict.bos_word,
eos_token=target_dict.eos_word,
word_delimiter_token="|",
do_lower_case=False,
)
processor = Wav2Vec2Processor(feature_extractor=feature_extractor, tokenizer=tokenizer)
processor.save_pretrained(pytorch_dump_folder_path)
hf_model = SEWDForCTC(config)
else:
hf_model = SEWDModel(config)
feature_extractor.save_pretrained(pytorch_dump_folder_path)
recursively_load_weights(model, hf_model, is_finetuned)
hf_model.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument("--checkpoint_path", default=None, type=str, help="Path to fairseq checkpoint")
parser.add_argument("--dict_path", default=None, type=str, help="Path to dict of fine-tuned model")
parser.add_argument("--config_path", default=None, type=str, help="Path to hf config.json of model to convert")
parser.add_argument(
"--is_finetuned", action="store_true", help="Whether the model to convert is a fine-tuned model or not"
)
args = parser.parse_args()
convert_sew_checkpoint(
args.checkpoint_path, args.pytorch_dump_folder_path, args.config_path, args.dict_path, args.is_finetuned
)
| 13,575 | 41.557994 | 119 | py |
transformers | transformers-main/src/transformers/models/sew_d/configuration_sew_d.py | # coding=utf-8
# Copyright 2021 ASAPP Inc. and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" SEW-D model configuration"""
import functools
import operator
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
SEW_D_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"asapp/sew-d-tiny-100k": "https://huggingface.co/asapp/sew-d-tiny-100k/resolve/main/config.json",
# See all SEW-D models at https://huggingface.co/models?filter=sew-d
}
class SEWDConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`SEWDModel`]. It is used to instantiate a SEW-D
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the SEW-D
[asapp/sew-d-tiny-100k](https://huggingface.co/asapp/sew-d-tiny-100k) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 32):
Vocabulary size of the SEW-D model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`SEWD`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
squeeze_factor (`int`, *optional*, defaults to 2):
Sequence length downsampling factor after the encoder and upsampling factor after the transformer.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
position_buckets (`int`, *optional*, defaults to 256):
The maximum size of relative position embeddings.
share_att_key (`bool`, *optional*, defaults to `True`):
Whether to share attention key with c2p and p2c.
relative_attention (`bool`, *optional*, defaults to `True`):
Whether to use relative position encoding.
pos_att_type (`Tuple[str]`, *optional*, defaults to `("p2c", "c2p")`):
The type of relative position attention, it can be a combination of `("p2c", "c2p")`, e.g. `("p2c")`,
`("p2c", "c2p")`, `("p2c", "c2p")`.
norm_rel_ebd (`str`, *optional*, defaults to `"layer_norm"`):
Whether to use layer norm in relative embedding (`"layer_norm"` if yes)
hidden_act (`str` or `function`, *optional*, defaults to `"gelu_python"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"`, `"gelu_python"` and `"gelu_new"` are supported.
hidden_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
final_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for the final projection layer of [`SEWDForCTC`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-7):
The epsilon used by the layer normalization layers in the transformer encoder.
feature_layer_norm_eps (`float`, *optional*, defaults to 1e-5):
The epsilon used by the layer normalization after the feature encoder.
feat_extract_norm (`str`, *optional*, defaults to `"group"`):
The norm to be applied to 1D convolutional layers in feature encoder. One of `"group"` for group
normalization of only the first 1D convolutional layer or `"layer"` for layer normalization of all 1D
convolutional layers.
feat_proj_dropout (`float`, *optional*, defaults to 0.0):
The dropout probability for output of the feature encoder.
feat_extract_activation (`str, `optional`, defaults to `"gelu"`):
The non-linear activation function (function or string) in the 1D convolutional layers of the feature
extractor. If string, `"gelu"`, `"relu"`, `"selu"` and `"gelu_new"` are supported.
conv_dim (`Tuple[int]` or `List[int]`, *optional*, defaults to `(64, 128, 128, 128, 128, 256, 256, 256, 256, 512, 512, 512, 512)`):
A tuple of integers defining the number of input and output channels of each 1D convolutional layer in the
feature encoder. The length of *conv_dim* defines the number of 1D convolutional layers.
conv_stride (`Tuple[int]` or `List[int]`, *optional*, defaults to `(5, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1)`):
A tuple of integers defining the stride of each 1D convolutional layer in the feature encoder. The length
of *conv_stride* defines the number of convolutional layers and has to match the length of *conv_dim*.
conv_kernel (`Tuple[int]` or `List[int]`, *optional*, defaults to `(10, 3, 1, 3, 1, 3, 1, 3, 1, 2, 1, 2, 1)`):
A tuple of integers defining the kernel size of each 1D convolutional layer in the feature encoder. The
length of *conv_kernel* defines the number of convolutional layers and has to match the length of
*conv_dim*.
conv_bias (`bool`, *optional*, defaults to `False`):
Whether the 1D convolutional layers have a bias.
num_conv_pos_embeddings (`int`, *optional*, defaults to 128):
Number of convolutional positional embeddings. Defines the kernel size of 1D convolutional positional
embeddings layer.
num_conv_pos_embedding_groups (`int`, *optional*, defaults to 16):
Number of groups of 1D convolutional positional embeddings layer.
apply_spec_augment (`bool`, *optional*, defaults to `True`):
Whether to apply *SpecAugment* data augmentation to the outputs of the feature encoder. For reference see
[SpecAugment: A Simple Data Augmentation Method for Automatic Speech
Recognition](https://arxiv.org/abs/1904.08779).
mask_time_prob (`float`, *optional*, defaults to 0.05):
Percentage (between 0 and 1) of all feature vectors along the time axis which will be masked. The masking
procecure generates ''mask_time_prob*len(time_axis)/mask_time_length'' independent masks over the axis. If
reasoning from the propability of each feature vector to be chosen as the start of the vector span to be
masked, *mask_time_prob* should be `prob_vector_start*mask_time_length`. Note that overlap may decrease the
actual percentage of masked vectors. This is only relevant if `apply_spec_augment is True`.
mask_time_length (`int`, *optional*, defaults to 10):
Length of vector span along the time axis.
mask_time_min_masks (`int`, *optional*, defaults to 2),:
The minimum number of masks of length `mask_feature_length` generated along the time axis, each time step,
irrespectively of `mask_feature_prob`. Only relevant if ''mask_time_prob*len(time_axis)/mask_time_length <
mask_time_min_masks''
mask_feature_prob (`float`, *optional*, defaults to 0.0):
Percentage (between 0 and 1) of all feature vectors along the feature axis which will be masked. The
masking procecure generates ''mask_feature_prob*len(feature_axis)/mask_time_length'' independent masks over
the axis. If reasoning from the propability of each feature vector to be chosen as the start of the vector
span to be masked, *mask_feature_prob* should be `prob_vector_start*mask_feature_length`. Note that overlap
may decrease the actual percentage of masked vectors. This is only relevant if `apply_spec_augment is
True`.
mask_feature_length (`int`, *optional*, defaults to 10):
Length of vector span along the feature axis.
mask_feature_min_masks (`int`, *optional*, defaults to 0),:
The minimum number of masks of length `mask_feature_length` generated along the feature axis, each time
step, irrespectively of `mask_feature_prob`. Only relevant if
''mask_feature_prob*len(feature_axis)/mask_feature_length < mask_feature_min_masks''
diversity_loss_weight (`int`, *optional*, defaults to 0.1):
The weight of the codebook diversity loss component.
ctc_loss_reduction (`str`, *optional*, defaults to `"sum"`):
Specifies the reduction to apply to the output of `torch.nn.CTCLoss`. Only relevant when training an
instance of [`SEWDForCTC`].
ctc_zero_infinity (`bool`, *optional*, defaults to `False`):
Whether to zero infinite losses and the associated gradients of `torch.nn.CTCLoss`. Infinite losses mainly
occur when the inputs are too short to be aligned to the targets. Only relevant when training an instance
of [`SEWDForCTC`].
use_weighted_layer_sum (`bool`, *optional*, defaults to `False`):
Whether to use a weighted average of layer outputs with learned weights. Only relevant when using an
instance of [`Wav2Vec2ForSequenceClassification`].
classifier_proj_size (`int`, *optional*, defaults to 256):
Dimensionality of the projection before token mean-pooling for classification.
Example:
```python
>>> from transformers import SEWDConfig, SEWDModel
>>> # Initializing a SEW-D asapp/sew-d-tiny-100k style configuration
>>> configuration = SEWDConfig()
>>> # Initializing a model (with random weights) from the asapp/sew-d-tiny-100k style configuration
>>> model = SEWDModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "sew-d"
def __init__(
self,
vocab_size=32,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
squeeze_factor=2,
max_position_embeddings=512,
position_buckets=256,
share_att_key=True,
relative_attention=True,
pos_att_type=("p2c", "c2p"),
norm_rel_ebd="layer_norm",
hidden_act="gelu_python",
hidden_dropout=0.1,
activation_dropout=0.1,
attention_dropout=0.1,
feat_proj_dropout=0.0,
final_dropout=0.1,
initializer_range=0.02,
layer_norm_eps=1e-7,
feature_layer_norm_eps=1e-5,
feat_extract_norm="group",
feat_extract_activation="gelu",
conv_dim=(64, 128, 128, 128, 128, 256, 256, 256, 256, 512, 512, 512, 512),
conv_stride=(5, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1, 2, 1),
conv_kernel=(10, 3, 1, 3, 1, 3, 1, 3, 1, 2, 1, 2, 1),
conv_bias=False,
num_conv_pos_embeddings=128,
num_conv_pos_embedding_groups=16,
apply_spec_augment=True,
mask_time_prob=0.05,
mask_time_length=10,
mask_time_min_masks=2,
mask_feature_prob=0.0,
mask_feature_length=10,
mask_feature_min_masks=0,
ctc_loss_reduction="mean",
ctc_zero_infinity=False,
use_weighted_layer_sum=False,
classifier_proj_size=256,
pad_token_id=0,
bos_token_id=1,
eos_token_id=2,
**kwargs,
):
super().__init__(**kwargs, pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id)
self.hidden_size = hidden_size
self.feat_extract_norm = feat_extract_norm
self.feat_extract_activation = feat_extract_activation
self.conv_dim = list(conv_dim)
self.conv_stride = list(conv_stride)
self.conv_kernel = list(conv_kernel)
self.conv_bias = conv_bias
self.num_conv_pos_embeddings = num_conv_pos_embeddings
self.num_conv_pos_embedding_groups = num_conv_pos_embedding_groups
self.num_feat_extract_layers = len(self.conv_dim)
self.num_hidden_layers = num_hidden_layers
self.intermediate_size = intermediate_size
self.squeeze_factor = squeeze_factor
self.max_position_embeddings = max_position_embeddings
self.position_buckets = position_buckets
self.share_att_key = share_att_key
self.relative_attention = relative_attention
self.norm_rel_ebd = norm_rel_ebd
self.pos_att_type = list(pos_att_type)
self.hidden_act = hidden_act
self.num_attention_heads = num_attention_heads
self.hidden_dropout = hidden_dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.feat_proj_dropout = feat_proj_dropout
self.final_dropout = final_dropout
self.layer_norm_eps = layer_norm_eps
self.feature_layer_norm_eps = feature_layer_norm_eps
self.initializer_range = initializer_range
self.vocab_size = vocab_size
if (
(len(self.conv_stride) != self.num_feat_extract_layers)
or (len(self.conv_kernel) != self.num_feat_extract_layers)
or (len(self.conv_dim) != self.num_feat_extract_layers)
):
raise ValueError(
"Configuration for convolutional layers is incorrect."
"It is required that `len(config.conv_dim)` == `len(config.conv_stride)` == `len(config.conv_kernel)`,"
f"but is `len(config.conv_dim) = {len(self.conv_dim)}`, `len(config.conv_stride)"
f"= {len(self.conv_stride)}`, `len(config.conv_kernel) = {len(self.conv_kernel)}`."
)
# fine-tuning config parameters for SpecAugment: https://arxiv.org/abs/1904.08779
self.apply_spec_augment = apply_spec_augment
self.mask_time_prob = mask_time_prob
self.mask_time_length = mask_time_length
self.mask_time_min_masks = mask_time_min_masks
self.mask_feature_prob = mask_feature_prob
self.mask_feature_length = mask_feature_length
self.mask_feature_min_masks = mask_feature_min_masks
# ctc loss
self.ctc_loss_reduction = ctc_loss_reduction
self.ctc_zero_infinity = ctc_zero_infinity
# sequence classification
self.use_weighted_layer_sum = use_weighted_layer_sum
self.classifier_proj_size = classifier_proj_size
@property
def inputs_to_logits_ratio(self):
return functools.reduce(operator.mul, self.conv_stride, 1)
| 15,981 | 55.473498 | 139 | py |
transformers | transformers-main/src/transformers/models/sew_d/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_sew_d": ["SEW_D_PRETRAINED_CONFIG_ARCHIVE_MAP", "SEWDConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_sew_d"] = [
"SEW_D_PRETRAINED_MODEL_ARCHIVE_LIST",
"SEWDForCTC",
"SEWDForSequenceClassification",
"SEWDModel",
"SEWDPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_sew_d import SEW_D_PRETRAINED_CONFIG_ARCHIVE_MAP, SEWDConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_sew_d import (
SEW_D_PRETRAINED_MODEL_ARCHIVE_LIST,
SEWDForCTC,
SEWDForSequenceClassification,
SEWDModel,
SEWDPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 1,804 | 30.666667 | 113 | py |
transformers | transformers-main/src/transformers/models/rag/tokenization_rag.py | # coding=utf-8
# Copyright 2020, The RAG Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for RAG."""
import os
import warnings
from typing import List, Optional
from ...tokenization_utils_base import BatchEncoding
from ...utils import logging
from .configuration_rag import RagConfig
logger = logging.get_logger(__name__)
class RagTokenizer:
def __init__(self, question_encoder, generator):
self.question_encoder = question_encoder
self.generator = generator
self.current_tokenizer = self.question_encoder
def save_pretrained(self, save_directory):
if os.path.isfile(save_directory):
raise ValueError(f"Provided path ({save_directory}) should be a directory, not a file")
os.makedirs(save_directory, exist_ok=True)
question_encoder_path = os.path.join(save_directory, "question_encoder_tokenizer")
generator_path = os.path.join(save_directory, "generator_tokenizer")
self.question_encoder.save_pretrained(question_encoder_path)
self.generator.save_pretrained(generator_path)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, **kwargs):
# dynamically import AutoTokenizer
from ..auto.tokenization_auto import AutoTokenizer
config = kwargs.pop("config", None)
if config is None:
config = RagConfig.from_pretrained(pretrained_model_name_or_path)
question_encoder = AutoTokenizer.from_pretrained(
pretrained_model_name_or_path, config=config.question_encoder, subfolder="question_encoder_tokenizer"
)
generator = AutoTokenizer.from_pretrained(
pretrained_model_name_or_path, config=config.generator, subfolder="generator_tokenizer"
)
return cls(question_encoder=question_encoder, generator=generator)
def __call__(self, *args, **kwargs):
return self.current_tokenizer(*args, **kwargs)
def batch_decode(self, *args, **kwargs):
return self.generator.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
return self.generator.decode(*args, **kwargs)
def _switch_to_input_mode(self):
self.current_tokenizer = self.question_encoder
def _switch_to_target_mode(self):
self.current_tokenizer = self.generator
def prepare_seq2seq_batch(
self,
src_texts: List[str],
tgt_texts: Optional[List[str]] = None,
max_length: Optional[int] = None,
max_target_length: Optional[int] = None,
padding: str = "longest",
return_tensors: str = None,
truncation: bool = True,
**kwargs,
) -> BatchEncoding:
warnings.warn(
"`prepare_seq2seq_batch` is deprecated and will be removed in version 5 of 🤗 Transformers. Use the "
"regular `__call__` method to prepare your inputs and the tokenizer under the `with_target_tokenizer` "
"context manager to prepare your targets. See the documentation of your specific tokenizer for more "
"details",
FutureWarning,
)
if max_length is None:
max_length = self.current_tokenizer.model_max_length
model_inputs = self(
src_texts,
add_special_tokens=True,
return_tensors=return_tensors,
max_length=max_length,
padding=padding,
truncation=truncation,
**kwargs,
)
if tgt_texts is None:
return model_inputs
# Process tgt_texts
if max_target_length is None:
max_target_length = self.current_tokenizer.model_max_length
labels = self(
text_target=tgt_texts,
add_special_tokens=True,
return_tensors=return_tensors,
padding=padding,
max_length=max_target_length,
truncation=truncation,
**kwargs,
)
model_inputs["labels"] = labels["input_ids"]
return model_inputs
| 4,573 | 36.801653 | 115 | py |
transformers | transformers-main/src/transformers/models/rag/modeling_rag.py | # coding=utf-8
# Copyright 2020, The RAG Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""RAG model implementation."""
import copy
from dataclasses import dataclass
from typing import Callable, List, Optional, Tuple, Union
import torch
from torch import nn
from ...configuration_utils import PretrainedConfig
from ...generation import BeamSearchScorer, GenerationConfig, LogitsProcessorList, StoppingCriteriaList
from ...modeling_outputs import ModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_rag import RagConfig
from .retrieval_rag import RagRetriever
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "RagConfig"
@dataclass
class RetrievAugLMMarginOutput(ModelOutput):
"""
Base class for retriever augmented marginalized models outputs.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head. The score is possibly marginalized over all documents for
each vocabulary token.
doc_scores (`torch.FloatTensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
past_key_values (`List[torch.FloatTensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `torch.FloatTensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size,
num_heads, sequence_length, embed_size_per_head)`).
Contains precomputed hidden-states (key and values in the attention blocks) of the decoder that can be used
(see `past_key_values` input) to speed up sequential decoding.
retrieved_doc_embeds (`torch.FloatTensor` of shape `(batch_size, config.n_docs, hidden_size)`, *optional*, returned when *output_retrieved=True*):
Embedded documents retrieved by the retriever. Is used with `question_encoder_last_hidden_state` to compute
the `doc_scores`.
retrieved_doc_ids (`torch.LongTensor` of shape `(batch_size, config.n_docs)`, *optional*, returned when *output_retrieved=True*):
The indexes of the embedded documents retrieved by the retriever.
context_input_ids (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input ids post-processed from the retrieved documents and the question encoder input_ids by the retriever.
context_attention_mask (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
question_encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden states at the output of the last layer of the question encoder pooled output of the
model.
question_enc_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden states of the question encoder at the output of each layer plus the initial embedding outputs.
question_enc_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the question encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_enc_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the generator encoder of the model.
generator_enc_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator encoder at the output of each layer plus the initial embedding outputs.
generator_enc_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_dec_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator decoder at the output of each layer plus the initial embedding outputs.
generator_dec_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator decoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Cross-attentions weights of the generator decoder, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
doc_scores: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
retrieved_doc_embeds: Optional[torch.FloatTensor] = None
retrieved_doc_ids: Optional[torch.LongTensor] = None
context_input_ids: Optional[torch.LongTensor] = None
context_attention_mask: Optional[torch.LongTensor] = None
question_encoder_last_hidden_state: Optional[torch.FloatTensor] = None
question_enc_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
question_enc_attentions: Optional[Tuple[torch.FloatTensor]] = None
generator_enc_last_hidden_state: Optional[torch.FloatTensor] = None
generator_enc_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
generator_enc_attentions: Optional[Tuple[torch.FloatTensor]] = None
generator_dec_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
generator_dec_attentions: Optional[Tuple[torch.FloatTensor]] = None
generator_cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class RetrievAugLMOutput(ModelOutput):
"""
Args:
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head. The score is possibly marginalized over all documents for
each vocabulary token.
doc_scores (`torch.FloatTensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
past_key_values (`List[torch.FloatTensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `torch.FloatTensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size,
num_heads, sequence_length, embed_size_per_head)`).
Contains precomputed hidden-states (key and values in the attention blocks) of the decoder that can be used
(see `past_key_values` input) to speed up sequential decoding.
retrieved_doc_embeds (`torch.FloatTensor` of shape `(batch_size, config.n_docs, hidden_size)`, *optional*, returned when *output_retrieved=True*):
Embedded documents retrieved by the retriever. Is used with `question_encoder_last_hidden_state` to compute
the `doc_scores`.
retrieved_doc_ids (`torch.LongTensor` of shape `(batch_size, config.n_docs)`, *optional*, returned when *output_retrieved=True*):
The indexes of the embedded documents retrieved by the retriever.
context_input_ids (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input ids post-processed from the retrieved documents and the question encoder input_ids by the retriever.
context_attention_mask (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
question_encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden states at the output of the last layer of the question encoder pooled output of the
model.
question_enc_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden states of the question encoder at the output of each layer plus the initial embedding outputs.
question_enc_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the question encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_enc_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the generator encoder of the model.
generator_enc_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator encoder at the output of each layer plus the initial embedding outputs.
generator_enc_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_dec_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings and one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator decoder at the output of each layer plus the initial embedding outputs.
generator_dec_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator decoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Cross-attentions weights of the generator decoder, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
"""
logits: torch.FloatTensor = None
doc_scores: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
retrieved_doc_embeds: Optional[torch.FloatTensor] = None
retrieved_doc_ids: Optional[torch.LongTensor] = None
context_input_ids: Optional[torch.LongTensor] = None
context_attention_mask: Optional[torch.LongTensor] = None
question_encoder_last_hidden_state: Optional[torch.FloatTensor] = None
question_enc_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
question_enc_attentions: Optional[Tuple[torch.FloatTensor]] = None
generator_enc_last_hidden_state: Optional[torch.FloatTensor] = None
generator_enc_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
generator_enc_attentions: Optional[Tuple[torch.FloatTensor]] = None
generator_dec_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
generator_dec_attentions: Optional[Tuple[torch.FloatTensor]] = None
generator_cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
class RagPreTrainedModel(PreTrainedModel):
r"""
RAG models were released with the paper [Retrieval-Augmented Generation for Knowledge-Intensive NLP
Tasks](https://arxiv.org/abs/2005.11401) by Patrick Lewis, Ethan Perez, Aleksandra Piktus et al.
RAG is a retriever augmented model and encapsulate three components: a question encoder, a dataset retriever and a
generator, the encoder and generator are trainable while the retriever is just an indexed dataset.
"""
config_class = RagConfig
base_model_prefix = "rag"
@classmethod
def from_pretrained(cls, *args, **kwargs):
# At the moment fast initialization is not supported
# for composite models
kwargs["_fast_init"] = False
return super().from_pretrained(*args, **kwargs)
@classmethod
def from_pretrained_question_encoder_generator(
cls,
question_encoder_pretrained_model_name_or_path: str = None,
generator_pretrained_model_name_or_path: str = None,
retriever: RagRetriever = None,
**kwargs,
) -> PreTrainedModel:
r"""
Instantiates an question encoder and a generator from one or two base classes of the library from pretrained
model checkpoints.
The model is set in evaluation mode by default using `model.eval()` (Dropout modules are deactivated). To train
the model, you need to first set it back in training mode with `model.train()`.
Params:
question_encoder_pretrained_model_name_or_path (`str`, *optional*, defaults to `None`):
Information necessary to initiate the question encoder. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~PreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *tensorflow index checkpoint file* (e.g, `./tf_model/model.ckpt.index`). In
this case, `from_tf` should be set to `True` and a configuration object should be provided as
`config` argument. This loading path is slower than converting the TensorFlow checkpoint in a
PyTorch model using the provided conversion scripts and loading the PyTorch model afterwards.
generator_pretrained_model_name_or_path (`str`, *optional*, defaults to `None`):
Information necessary to initiate the generator. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~PreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *tensorflow index checkpoint file* (e.g, `./tf_model/model.ckpt.index`). In
this case, `from_tf` should be set to `True` and a configuration object should be provided as
`config` argument. This loading path is slower than converting the TensorFlow checkpoint in a
PyTorch model using the provided conversion scripts and loading the PyTorch model afterwards.
model_args (remaining positional arguments, *optional*):
All remaining positional arguments will be passed to the underlying model's `__init__` method.
retriever ([`RagRetriever`], *optional*):
The retriever to use.
kwwargs (remaining dictionary of keyword arguments, *optional*):
Can be used to update the configuration object (after it being loaded) and initiate the model (e.g.,
`output_attentions=True`).
- To update the question_encoder configuration, use the prefix *question_encoder_* for each
configuration parameter.
- To update the generator configuration, use the prefix *generator_* for each configuration parameter.
- To update the parent model configuration, do not use a prefix for each configuration parameter.
Behaves differently depending on whether a `config` is provided or automatically loaded.
Example:
```python
>>> from transformers import RagModel
>>> # initialize a RAG from two pretrained models.
>>> model = RagModel.from_pretrained_question_encoder_generator(
... "facebook/dpr-question_encoder-single-nq-base", "t5-small"
... )
>>> # saving model after fine-tuning
>>> model.save_pretrained("./rag")
>>> # load fine-tuned model
>>> model = RagModel.from_pretrained("./rag")
```"""
kwargs_question_encoder = {
argument[len("question_encoder_") :]: value
for argument, value in kwargs.items()
if argument.startswith("question_encoder_")
}
kwargs_generator = {
argument[len("generator_") :]: value
for argument, value in kwargs.items()
if argument.startswith("generator_")
}
# remove question_encoder, generator kwargs from kwargs
for key in kwargs_question_encoder.keys():
del kwargs["question_encoder_" + key]
for key in kwargs_generator.keys():
del kwargs["generator_" + key]
# Load and initialize the question_encoder and generator
# The distinction between question_encoder and generator at the model level is made
# by the value of the flag `is_generator` that we need to set correctly.
question_encoder = kwargs_question_encoder.pop("model", None)
if question_encoder is None:
assert question_encoder_pretrained_model_name_or_path is not None, (
"If `model` is not defined as an argument, a `question_encoder_pretrained_model_name_or_path` has to"
" be defined"
)
from ..auto.modeling_auto import AutoModel
if "config" not in kwargs_question_encoder:
from ..auto.configuration_auto import AutoConfig
question_encoder_config, kwargs_question_encoder = AutoConfig.from_pretrained(
question_encoder_pretrained_model_name_or_path,
**kwargs_question_encoder,
return_unused_kwargs=True,
)
kwargs_question_encoder["config"] = question_encoder_config
question_encoder = AutoModel.from_pretrained(
question_encoder_pretrained_model_name_or_path, **kwargs_question_encoder
)
generator = kwargs_generator.pop("model", None)
if generator is None:
assert generator_pretrained_model_name_or_path is not None, (
"If `generator_model` is not defined as an argument, a `generator_pretrained_model_name_or_path` has"
" to be defined"
)
from ..auto.modeling_auto import AutoModelForSeq2SeqLM
if "config" not in kwargs_generator:
from ..auto.configuration_auto import AutoConfig
generator_config, kwargs_generator = AutoConfig.from_pretrained(
generator_pretrained_model_name_or_path, **kwargs_generator, return_unused_kwargs=True
)
kwargs_generator["config"] = generator_config
generator = AutoModelForSeq2SeqLM.from_pretrained(
generator_pretrained_model_name_or_path, **kwargs_generator
)
# instantiate config with corresponding kwargs
config = kwargs.get("config", None)
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
return cls(question_encoder=question_encoder, generator=generator, config=config, retriever=retriever)
RAG_START_DOCSTRING = r"""
RAG is a seq2seq model which encapsulates two core components: a question encoder and a generator. During a forward
pass, we encode the input with the question encoder and pass it to the retriever to extract relevant context
documents. The documents are then prepended to the input. Such contextualized inputs is passed to the generator.
The question encoder can be any *autoencoding* model, preferably [`DPRQuestionEncoder`], and the generator can be
any *seq2seq* model, preferably [`BartForConditionalGeneration`].
The model can be initialized with a [`RagRetriever`] for end-to-end generation or used in combination with the
outputs of a retriever in multiple steps---see examples for more details. The model is compatible any
*autoencoding* model as the `question_encoder` and any *seq2seq* model with language model head as the `generator`.
It has been tested with [`DPRQuestionEncoder`] as the `question_encoder` and [`BartForConditionalGeneration`] or
[`T5ForConditionalGeneration`] as the `generator`.
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Args:
config ([`RagConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
question_encoder ([`PreTrainedModel`]):
An encoder model compatible with the faiss index encapsulated by the `retriever`.
generator ([`PreTrainedModel`]):
A seq2seq model used as the generator in the RAG architecture.
retriever ([`RagRetriever`]):
A retriever class encapsulating a faiss index queried to obtain context documents for current inputs.
"""
RAG_FORWARD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. [`RagConfig`], used to initialize the model, specifies
which generator to use, it also specifies a compatible generator tokenizer. Use that tokenizer class to
obtain the indices.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*)
Tuple consists of (`generator_enc_last_hidden_state`, *optional*: `generator_enc_hidden_states`,
*optional*: `generator_enc_attentions`). `generator_enc_last_hidden_state` of shape `(batch_size, n_docs *
sequence_length, hidden_size)` is a sequence of hidden-states at the output of the last layer of the
generator's encoder.
Used by the ([`RagModel`]) model during decoding.
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Provide for generation tasks. `None` by default, construct as per instructions for the generator model
you're using with your RAG instance.
decoder_attention_mask (`torch.BoolTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
past_key_values (`tuple(tuple(torch.FloatTensor))`):
Tuple consists of two elements: `encoder_outputs` of the RAG model (see `encoder_outputs`) and
`past_key_values` of the underlying generator. Can be used to speed up decoding. `past_key_values` are used
in the ([`RagTokenForGeneration`]) model during decoding.
doc_scores (`torch.FloatTensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`. If the model has is not initialized with a `retriever` `doc_scores`
has to be provided to the forward pass. `doc_scores` can be computed via
`question_encoder_last_hidden_state` and `retrieved_doc_embeds`, see examples for more information.
context_input_ids (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input IDs post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model has is not initialized with a `retriever` ``context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`]. context_attention_mask
(`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*,
returned when *output_retrieved=True*): Attention mask post-processed from the retrieved documents and the
question encoder `input_ids` by the retriever.
If the model has is not initialized with a `retriever` `context_attention_mask` has to be provided to the
forward pass. `context_attention_mask` are returned by [`~RagRetriever.__call__`].
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
output_retrieved(`bool`, *optional*):
Whether or not to return the `retrieved_doc_embeds`, `retrieved_doc_ids`, `context_input_ids` and
`context_attention_mask`. See returned tensors for more detail.
n_docs (`int`, *optional*, defaults to `config.n_docs``)
Number of documents to retrieve and/or number of documents for which to generate an answer.
"""
@add_start_docstrings_to_model_forward(RAG_START_DOCSTRING)
class RagModel(RagPreTrainedModel):
def __init__(
self,
config: Optional[PretrainedConfig] = None,
question_encoder: Optional[PreTrainedModel] = None,
generator: Optional[PreTrainedModel] = None,
retriever: Optional[RagRetriever] = None, # or maybe just use a `set_retriever(...)` method
**kwargs,
):
assert config is not None or (
question_encoder is not None and generator is not None
), "Either a configuration or an question_encoder and a generator has to be provided."
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
else:
assert isinstance(config, self.config_class), f"config: {config} has to be of type {self.config_class}"
super().__init__(config)
if question_encoder is None:
from ..auto.modeling_auto import AutoModel
question_encoder = AutoModel.from_config(config.question_encoder)
if generator is None:
from ..auto.modeling_auto import AutoModelForSeq2SeqLM
generator = AutoModelForSeq2SeqLM.from_config(config.generator)
self.retriever = retriever
if self.retriever is not None:
assert isinstance(
retriever, RagRetriever
), f"`self.retriever` is of type {type(self.retriever)}, but should be of type `RagRetriever`"
self.retriever = retriever
self.question_encoder = question_encoder
self.generator = generator
self.ctx_encoder = None
self.context_encoder_training = False
@add_start_docstrings_to_model_forward(RAG_FORWARD_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=RetrievAugLMOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
doc_scores: Optional[torch.FloatTensor] = None,
context_input_ids: Optional[torch.LongTensor] = None,
context_attention_mask=None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
output_retrieved: Optional[bool] = None,
n_docs: Optional[int] = None,
) -> Union[Tuple[torch.Tensor], RetrievAugLMOutput]:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RagRetriever, RagModel
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/rag-token-base")
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-token-base", index_name="exact", use_dummy_dataset=True
... )
>>> # initialize with RagRetriever to do everything in one forward call
>>> model = RagModel.from_pretrained("facebook/rag-token-base", retriever=retriever)
>>> inputs = tokenizer("How many people live in Paris?", return_tensors="pt")
>>> outputs = model(input_ids=inputs["input_ids"])
```"""
n_docs = n_docs if n_docs is not None else self.config.n_docs
use_cache = use_cache if use_cache is not None else self.config.use_cache
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
output_retrieved = output_retrieved if output_retrieved is not None else self.config.output_retrieved
# whether retriever has to be used
has_to_retrieve = (
self.retriever is not None
and (context_input_ids is None or context_attention_mask is None or doc_scores is None)
and encoder_outputs is None
)
# encoder_outputs are pre-computed during RAG-token generation
if encoder_outputs is None:
if has_to_retrieve:
question_enc_outputs = self.question_encoder(
input_ids, attention_mask=attention_mask, return_dict=True
)
question_encoder_last_hidden_state = question_enc_outputs[0] # hidden states of question encoder
retriever_outputs = self.retriever(
input_ids,
question_encoder_last_hidden_state.cpu().detach().to(torch.float32).numpy(),
prefix=self.generator.config.prefix,
n_docs=n_docs,
return_tensors="pt",
)
if self.context_encoder_training:
(
context_input_ids,
context_attention_mask,
retrieved_doc_embeds,
retrived_doc_input_ids,
retrived_doc_attention_mask,
retrieved_doc_ids,
) = (
retriever_outputs["context_input_ids"],
retriever_outputs["context_attention_mask"],
retriever_outputs["retrieved_doc_embeds"],
retriever_outputs["tokenized_doc_ids"],
retriever_outputs["tokenized_doc_attention_mask"],
retriever_outputs["doc_ids"],
)
context_input_ids = context_input_ids.to(input_ids)
context_attention_mask = context_attention_mask.to(input_ids)
retrived_doc_input_ids = retrived_doc_input_ids.to(input_ids)
retrived_doc_attention_mask = retrived_doc_attention_mask.to(input_ids)
retrieved_doc_embeds = self.ctx_encoder(
retrived_doc_input_ids, attention_mask=retrived_doc_attention_mask, return_dict=True
).pooler_output
retrieved_doc_embeds = retrieved_doc_embeds.view(
-1, n_docs, question_encoder_last_hidden_state.shape[1]
) # reshaping
# compute doc_scores involving ctx_encoder
doc_scores = torch.bmm(
question_encoder_last_hidden_state.unsqueeze(1), retrieved_doc_embeds.transpose(1, 2)
).squeeze(1)
else:
context_input_ids, context_attention_mask, retrieved_doc_embeds, retrieved_doc_ids = (
retriever_outputs["context_input_ids"],
retriever_outputs["context_attention_mask"],
retriever_outputs["retrieved_doc_embeds"],
retriever_outputs["doc_ids"],
)
# set to correct device
retrieved_doc_embeds = retrieved_doc_embeds.to(question_encoder_last_hidden_state)
context_input_ids = context_input_ids.to(input_ids)
context_attention_mask = context_attention_mask.to(input_ids)
# compute doc_scores
doc_scores = torch.bmm(
question_encoder_last_hidden_state.unsqueeze(1), retrieved_doc_embeds.transpose(1, 2)
).squeeze(1)
else:
assert context_input_ids is not None, (
"Make sure that `context_input_ids` are passed, if no `retriever` is set. Alternatively, you can"
" set a retriever using the `set_retriever(...)` function."
)
assert context_attention_mask is not None, (
"Make sure that `context_attention_mask` are passed, if no `retriever` is set. Alternatively, you"
" can set a retriever using the `set_retriever(...)` function."
)
assert doc_scores is not None, (
"Make sure that `doc_scores` are passed, if no `retriever` is set. Alternatively, you can set a"
" retriever using the `set_retriever(...)` function."
)
assert (
doc_scores is not None
), "Make sure that `doc_scores` are passed when passing `encoder_outputs` to the forward function."
assert (doc_scores.shape[1] % n_docs) == 0, (
f" The first dimension of `context_input_ids` should be a multiple of `n_docs`={n_docs}, but is"
f" {context_input_ids.shape[0]}."
)
# Decoder input without context documents
if decoder_input_ids is not None:
decoder_input_ids = decoder_input_ids.repeat_interleave(n_docs, dim=0)
if decoder_attention_mask is not None:
decoder_attention_mask = decoder_attention_mask.repeat_interleave(n_docs, dim=0)
gen_outputs = self.generator(
input_ids=context_input_ids,
attention_mask=context_attention_mask,
encoder_outputs=encoder_outputs,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
return_dict=True,
)
if not has_to_retrieve:
question_encoder_last_hidden_state = None
question_enc_hidden_states = None
question_enc_attentions = None
retrieved_doc_embeds = None
retrieved_doc_ids = None
else:
question_enc_hidden_states = question_enc_outputs.hidden_states
question_enc_attentions = question_enc_outputs.attentions
if not has_to_retrieve or not output_retrieved:
# don't output retrieved docs
context_input_ids = (None,)
context_attention_mask = None
retrieved_doc_embeds = None
retrieved_doc_ids = None
return RetrievAugLMOutput(
logits=gen_outputs.logits,
doc_scores=doc_scores,
past_key_values=gen_outputs.past_key_values,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
retrieved_doc_embeds=retrieved_doc_embeds,
retrieved_doc_ids=retrieved_doc_ids,
question_encoder_last_hidden_state=question_encoder_last_hidden_state,
question_enc_hidden_states=question_enc_hidden_states,
question_enc_attentions=question_enc_attentions,
generator_enc_last_hidden_state=gen_outputs.encoder_last_hidden_state,
generator_enc_hidden_states=gen_outputs.encoder_hidden_states,
generator_enc_attentions=gen_outputs.encoder_attentions,
generator_dec_hidden_states=gen_outputs.decoder_hidden_states,
generator_dec_attentions=gen_outputs.decoder_attentions,
generator_cross_attentions=gen_outputs.cross_attentions,
)
@add_start_docstrings_to_model_forward(
"""
A RAG-sequence model implementation. It performs RAG-sequence specific marginalization in the forward pass.
""",
RAG_START_DOCSTRING,
)
class RagSequenceForGeneration(RagPreTrainedModel):
def __init__(
self,
config: Optional[PretrainedConfig] = None,
question_encoder: Optional[PreTrainedModel] = None,
generator: Optional[PreTrainedModel] = None,
retriever: Optional[RagRetriever] = None,
**kwargs,
):
assert config is not None or (
question_encoder is not None and generator is not None
), "Either a configuration or an encoder and a generator has to be provided."
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
super().__init__(config)
# instantiate model
self.rag = RagModel(config=config, question_encoder=question_encoder, generator=generator, retriever=retriever)
def set_retriever(self, retriever: RagRetriever):
self.rag.retriever = retriever
def set_context_encoder_for_training(self, ctx_encoder: PreTrainedModel):
self.rag.context_encoder_training = True
self.rag.ctx_encoder = ctx_encoder
@add_start_docstrings_to_model_forward(RAG_FORWARD_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=RetrievAugLMMarginOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.Tensor]]] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
context_input_ids: Optional[torch.LongTensor] = None,
context_attention_mask: Optional[torch.LongTensor] = None,
doc_scores: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
output_retrieved: Optional[bool] = None,
exclude_bos_score: Optional[bool] = None,
reduce_loss: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
n_docs: Optional[int] = None,
**kwargs, # needs kwargs for generation
) -> RetrievAugLMMarginOutput:
r"""
exclude_bos_score (`bool`, *optional*):
Only relevant if `labels` is passed. If `True`, the score of the BOS token is disregarded when computing
the loss.
reduce_loss (`bool`, *optional*):
Only relevant if `labels` is passed. If `True`, the NLL loss is reduced using the `torch.Tensor.sum`
operation.
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Legacy dictionary, which is required so that model can use *generate()* function.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RagRetriever, RagSequenceForGeneration
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/rag-sequence-nq")
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-sequence-nq", index_name="exact", use_dummy_dataset=True
... )
>>> # initialize with RagRetriever to do everything in one forward call
>>> model = RagSequenceForGeneration.from_pretrained("facebook/rag-token-nq", retriever=retriever)
>>> inputs = tokenizer("How many people live in Paris?", return_tensors="pt")
>>> targets = tokenizer(text_target="In Paris, there are 10 million people.", return_tensors="pt")
>>> input_ids = inputs["input_ids"]
>>> labels = targets["input_ids"]
>>> outputs = model(input_ids=input_ids, labels=labels)
>>> # or use retriever separately
>>> model = RagSequenceForGeneration.from_pretrained("facebook/rag-sequence-nq", use_dummy_dataset=True)
>>> # 1. Encode
>>> question_hidden_states = model.question_encoder(input_ids)[0]
>>> # 2. Retrieve
>>> docs_dict = retriever(input_ids.numpy(), question_hidden_states.detach().numpy(), return_tensors="pt")
>>> doc_scores = torch.bmm(
... question_hidden_states.unsqueeze(1), docs_dict["retrieved_doc_embeds"].float().transpose(1, 2)
... ).squeeze(1)
>>> # 3. Forward to generator
>>> outputs = model(
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... decoder_input_ids=labels,
... )
```"""
n_docs = n_docs if n_docs is not None else self.config.n_docs
exclude_bos_score = exclude_bos_score if exclude_bos_score is not None else self.config.exclude_bos_score
reduce_loss = reduce_loss if reduce_loss is not None else self.config.reduce_loss
if labels is not None:
if decoder_input_ids is None:
decoder_input_ids = labels
use_cache = False
outputs = self.rag(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_outputs=encoder_outputs,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
output_retrieved=output_retrieved,
n_docs=n_docs,
)
loss = None
if labels is not None:
loss = self.get_nll(
outputs.logits,
outputs.doc_scores,
decoder_input_ids,
reduce_loss=reduce_loss,
epsilon=self.config.label_smoothing,
exclude_bos_score=exclude_bos_score,
n_docs=n_docs,
)
return RetrievAugLMMarginOutput(
loss=loss,
logits=outputs.logits,
doc_scores=outputs.doc_scores,
past_key_values=outputs.past_key_values,
context_input_ids=outputs.context_input_ids,
context_attention_mask=outputs.context_attention_mask,
retrieved_doc_embeds=outputs.retrieved_doc_embeds,
retrieved_doc_ids=outputs.retrieved_doc_ids,
question_encoder_last_hidden_state=outputs.question_encoder_last_hidden_state,
question_enc_hidden_states=outputs.question_enc_hidden_states,
question_enc_attentions=outputs.question_enc_attentions,
generator_enc_last_hidden_state=outputs.generator_enc_last_hidden_state,
generator_enc_hidden_states=outputs.generator_enc_hidden_states,
generator_enc_attentions=outputs.generator_enc_attentions,
generator_dec_hidden_states=outputs.generator_dec_hidden_states,
generator_dec_attentions=outputs.generator_dec_attentions,
generator_cross_attentions=outputs.generator_cross_attentions,
)
@property
def retriever(self):
return self.rag.retriever
@property
def generator(self):
return self.rag.generator
@property
def question_encoder(self):
return self.rag.question_encoder
@torch.no_grad()
def generate(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
context_input_ids: Optional[torch.LongTensor] = None,
context_attention_mask: Optional[torch.LongTensor] = None,
doc_scores: Optional[torch.FloatTensor] = None,
do_deduplication: Optional[bool] = None, # defaults to True
num_return_sequences: Optional[int] = None, # defaults to 1
num_beams: Optional[int] = None, # defaults to 1
n_docs: Optional[int] = None,
**model_kwargs,
) -> torch.LongTensor:
"""
Implements RAG sequence "thorough" decoding. Read the [`~generation.GenerationMixin.generate`]` documentation
for more information on how to set other generate input parameters.
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
The sequence used as a prompt for the generation. If `input_ids` is not passed, then
`context_input_ids` has to be provided.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
context_input_ids (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input IDs post-processed from the retrieved documents and the question encoder input_ids by the
retriever.
context_attention_mask (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model is not initialized with a `retriever` or `input_ids` is not given, `context_input_ids` and
`context_attention_mask` have to be provided to the forward pass. They are returned by
[`~RagRetriever.__call__`].
doc_scores (`torch.FloatTensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
If the model is not initialized with a `retriever` or `input_ids` is not given, `doc_scores` has to be
provided to the forward pass. `doc_scores` are returned by [`~RagRetriever.__call__`].
do_deduplication (`bool`, *optional*):
Whether or not to deduplicate the generations from different context documents for a given input. Has
to be set to `False` if used while training with distributed backend.
num_return_sequences(`int`, *optional*, defaults to 1):
The number of independently computed returned sequences for each element in the batch. Note that this
is not the value we pass to the `generator`'s `[`~generation.GenerationMixin.generate`]` function,
where we set `num_return_sequences` to `num_beams`.
num_beams (`int`, *optional*, defaults to 1):
Number of beams for beam search. 1 means no beam search.
n_docs (`int`, *optional*, defaults to `config.n_docs`)
Number of documents to retrieve and/or number of documents for which to generate an answer.
kwargs (`Dict[str, Any]`, *optional*):
Additional kwargs will be passed to [`~generation.GenerationMixin.generate`].
Return:
`torch.LongTensor` of shape `(batch_size * num_return_sequences, sequence_length)`: The generated
sequences. The second dimension (sequence length) is either equal to `max_length` or shorter if all batches
finished early due to the `eos_token_id`.
"""
n_docs = n_docs if n_docs is not None else self.config.n_docs
do_deduplication = do_deduplication if do_deduplication is not None else self.config.do_deduplication
num_doc_return_sequences = (
num_return_sequences if num_return_sequences is not None else self.config.num_return_sequences
)
num_beams = num_beams if num_beams is not None else self.config.num_beams
assert (
input_ids is not None or context_input_ids is not None
), " At least one of input_ids or context_input_ids must be given"
if self.retriever is not None and context_input_ids is None:
question_hidden_states = self.question_encoder(input_ids, attention_mask=attention_mask)[0]
context_input_ids = self.retriever(
input_ids,
question_hidden_states.cpu().detach().to(torch.float32).numpy(),
prefix=self.generator.config.prefix,
n_docs=n_docs,
return_tensors="pt",
)["context_input_ids"]
# set to correct device
context_input_ids = context_input_ids.to(input_ids)
hypos = []
model_kwargs["num_beams"] = num_beams
model_kwargs["num_return_sequences"] = num_beams
model_kwargs["attention_mask"] = None
batch_size = input_ids.shape[0] if input_ids is not None else context_input_ids.shape[0] // n_docs
for index in range(batch_size):
# first, generate beams from documents:
generator_input_ids = context_input_ids[index * n_docs : (index + 1) * n_docs] # (n_docs, max_len)
output_sequences = self.generator.generate(
generator_input_ids,
**model_kwargs,
) # n_docs * n_beam, tgt_len
if do_deduplication:
# do_deduplication, max_output_len
output_sequences = torch.stack(list({str(k.tolist()): k for k in output_sequences}.values()))
num_candidates = output_sequences.shape[
0
] # after deduplication, this number can be less than n_docs*n_beam
# then, run model forwards to get nll scores:
if input_ids is not None:
new_input_ids = input_ids[index : index + 1].repeat(num_candidates, 1)
outputs = self(new_input_ids, labels=output_sequences, exclude_bos_score=True)
else: # input_ids is None, need context_input_ids/mask and doc_scores
assert context_attention_mask is not None, (
"Make sure that `context_attention_mask` are passed, if no `input_ids` is set. Alternatively, you"
" can set a retriever using the `set_retriever(...)` function."
)
assert doc_scores is not None, (
"Make sure that `doc_scores` are passed, if no `input_ids` is set. Alternatively, you can set a"
" retriever using the `set_retriever(...)` function."
)
individual_input_ids = generator_input_ids.repeat(
num_candidates, 1
) # (num_candidates*n_docs, max_len)
individual_attention_mask = context_attention_mask[index * n_docs : (index + 1) * n_docs]
individual_attention_mask = individual_attention_mask.repeat(num_candidates, 1)
individual_doc_scores = doc_scores[index : (index + 1), :] # doc_scores.shape = [batch, n_docs]
individual_doc_scores = individual_doc_scores.repeat(num_candidates, 1) # [num_candidates, n_docs]
outputs = self(
context_input_ids=individual_input_ids,
context_attention_mask=individual_attention_mask,
doc_scores=individual_doc_scores,
labels=output_sequences,
exclude_bos_score=True,
)
top_cand_inds = (-outputs["loss"]).topk(num_doc_return_sequences)[1]
# add hypothesis
hypos.append(output_sequences[top_cand_inds])
return self._cat_and_pad(hypos, pad_token_id=self.config.generator.pad_token_id)
def get_nll(
self, seq_logits, doc_scores, target, reduce_loss=False, epsilon=0.0, exclude_bos_score=False, n_docs=None
):
# shift tokens left
target = torch.cat(
[target[:, 1:], target.new(target.shape[0], 1).fill_(self.config.generator.pad_token_id)], 1
)
n_docs = n_docs if n_docs is not None else self.config.n_docs
# bos_token_id is None for T5
bos_token_id = self.config.bos_token_id or self.config.generator.bos_token_id
use_bos = bos_token_id is not None and target[:, 0].eq(bos_token_id).all()
def _mask_pads(ll, smooth_obj):
pad_mask = target.eq(self.config.generator.pad_token_id)
if pad_mask.any():
ll.masked_fill_(pad_mask, 0.0)
smooth_obj.masked_fill_(pad_mask, 0.0)
return ll.squeeze(-1), smooth_obj.squeeze(-1)
# seq_logits dim = (batch*n_docs, tgt_len , #vocabs)
seq_logprobs = nn.functional.log_softmax(seq_logits, dim=-1).view(
seq_logits.shape[0] // n_docs, n_docs, -1, seq_logits.size(-1)
) # batch_size x n_docs x tgt_len x #vocab_size
doc_logprobs = nn.functional.log_softmax(doc_scores, dim=1).unsqueeze(-1).unsqueeze(-1)
# RAG-sequence marginalization
first_token_scores = seq_logprobs[:, :, :1, :]
second_token_scores = seq_logprobs[:, :, 1:2, :]
remainder = seq_logprobs[:, :, 2:, :]
rag_logprobs = torch.cat([first_token_scores, second_token_scores + doc_logprobs, remainder], dim=2)
# calculate loss
target = target.unsqueeze(1).unsqueeze(-1).repeat(1, n_docs, 1, 1)
assert target.dim() == rag_logprobs.dim()
ll = rag_logprobs.gather(dim=-1, index=target)
smooth_obj = rag_logprobs.sum(dim=-1, keepdim=True) # total sum of all (normalised) logits
ll, smooth_obj = _mask_pads(ll, smooth_obj)
# sum over tokens, exclude bos while scoring
ll = ll[:, :, 1:].sum(2) if exclude_bos_score and use_bos else ll.sum(2)
smooth_obj = smooth_obj.sum(2)
ll = ll.logsumexp(1) # logsumexp over docs
smooth_obj = smooth_obj.logsumexp(1)
nll_loss = -ll
smooth_loss = -smooth_obj
if reduce_loss:
nll_loss = nll_loss.sum()
smooth_loss = smooth_loss.sum()
eps_i = epsilon / rag_logprobs.size(-1)
loss = (1.0 - epsilon) * nll_loss + eps_i * smooth_loss
return loss
@staticmethod
def _cat_and_pad(tensors, pad_token_id):
output = (
tensors[0].new(sum([t.shape[0] for t in tensors]), max([t.shape[1] for t in tensors])).fill_(pad_token_id)
)
ind = 0
for t in tensors:
output[ind : ind + t.shape[0], : t.shape[1]] = t
ind += t.shape[0]
return output
@add_start_docstrings_to_model_forward(
"""
A RAG-token model implementation. It performs RAG-token specific marginalization in the forward pass.
""",
RAG_START_DOCSTRING,
)
class RagTokenForGeneration(RagPreTrainedModel):
def __init__(
self,
config: Optional[PretrainedConfig] = None,
question_encoder: Optional[PreTrainedModel] = None,
generator: Optional[PreTrainedModel] = None,
retriever: Optional[RagRetriever] = None,
**kwargs,
):
assert config is not None or (
question_encoder is not None and generator is not None
), "Either a configuration or an encoder and a generator has to be provided."
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
super().__init__(config)
# instantiate model
self.rag = RagModel(config=config, question_encoder=question_encoder, generator=generator, retriever=retriever)
def set_retriever(self, retriever: RagRetriever):
self.rag.retriever = retriever
def set_context_encoder_for_training(self, ctx_encoder: PreTrainedModel):
self.rag.context_encoder_training = True
self.rag.ctx_encoder = ctx_encoder
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
use_cache=None,
encoder_outputs=None,
doc_scores=None,
n_docs=None,
**kwargs,
):
if past_key_values is not None:
# if past is defined use only last decoder_input_ids
decoder_input_ids = decoder_input_ids[:, -1:]
return {
"input_ids": None,
"encoder_outputs": encoder_outputs,
"doc_scores": doc_scores,
"context_attention_mask": attention_mask,
"decoder_input_ids": decoder_input_ids,
"past_key_values": past_key_values,
"use_cache": use_cache,
"do_marginalize": True,
"n_docs": n_docs,
}
@property
def retriever(self):
return self.rag.retriever
@property
def generator(self):
return self.rag.generator
@property
def question_encoder(self):
return self.rag.question_encoder
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
"""Reorders cache for generation. BART-inspired but we need to take care of the extra dimension for docs"""
def _reorder_stacked(hidden_states, new_order):
n_docs = hidden_states.shape[0] // new_order.shape[0]
hidden_states = hidden_states.view(-1, n_docs, *hidden_states.shape[1:])
hidden_states = hidden_states.index_select(0, new_order)
result = hidden_states.view(-1, *hidden_states.shape[2:])
return result
reordered_past = ()
for layer_past in past_key_values:
# get the correct batch idx from decoder layer's batch dim for cross and self-attn
reordered_past += (tuple(_reorder_stacked(past_state, beam_idx) for past_state in layer_past),)
return reordered_past
def marginalize(self, seq_logits, doc_scores, n_docs=None):
n_docs = n_docs if n_docs is not None else self.config.n_docs
# RAG-token marginalization
seq_logprobs = nn.functional.log_softmax(seq_logits, dim=-1).view(
seq_logits.shape[0] // n_docs, n_docs, -1, seq_logits.size(-1)
)
doc_logprobs = torch.log_softmax(doc_scores, dim=1)
log_prob_sum = seq_logprobs + doc_logprobs.unsqueeze(-1).unsqueeze(-1)
return torch.logsumexp(log_prob_sum, dim=1)
@add_start_docstrings_to_model_forward(RAG_FORWARD_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=RetrievAugLMMarginOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
encoder_outputs: Optional[Tuple[Tuple[torch.Tensor]]] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
context_input_ids: Optional[torch.LongTensor] = None,
context_attention_mask: Optional[torch.LongTensor] = None,
doc_scores: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
output_retrieved: Optional[bool] = None,
do_marginalize: Optional[bool] = None,
reduce_loss: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
n_docs: Optional[int] = None,
**kwargs, # needs kwargs for generation
) -> RetrievAugLMMarginOutput:
r"""
do_marginalize (`bool`, *optional*):
If `True`, the logits are marginalized over all documents by making use of
`torch.nn.functional.log_softmax`.
reduce_loss (`bool`, *optional*):
Only relevant if `labels` is passed. If `True`, the NLL loss is reduced using the `torch.Tensor.sum`
operation.
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Legacy dictionary, which is required so that model can use *generate()* function.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RagRetriever, RagTokenForGeneration
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/rag-token-nq")
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-token-nq", index_name="exact", use_dummy_dataset=True
... )
>>> # initialize with RagRetriever to do everything in one forward call
>>> model = RagTokenForGeneration.from_pretrained("facebook/rag-token-nq", retriever=retriever)
>>> inputs = tokenizer("How many people live in Paris?", return_tensors="pt")
>>> targets = tokenizer(text_target="In Paris, there are 10 million people.", return_tensors="pt")
>>> input_ids = inputs["input_ids"]
>>> labels = targets["input_ids"]
>>> outputs = model(input_ids=input_ids, labels=labels)
>>> # or use retriever separately
>>> model = RagTokenForGeneration.from_pretrained("facebook/rag-token-nq", use_dummy_dataset=True)
>>> # 1. Encode
>>> question_hidden_states = model.question_encoder(input_ids)[0]
>>> # 2. Retrieve
>>> docs_dict = retriever(input_ids.numpy(), question_hidden_states.detach().numpy(), return_tensors="pt")
>>> doc_scores = torch.bmm(
... question_hidden_states.unsqueeze(1), docs_dict["retrieved_doc_embeds"].float().transpose(1, 2)
... ).squeeze(1)
>>> # 3. Forward to generator
>>> outputs = model(
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... decoder_input_ids=labels,
... )
>>> # or directly generate
>>> generated = model.generate(
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... )
>>> generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)
```"""
n_docs = n_docs if n_docs is not None else self.config.n_docs
do_marginalize = do_marginalize if do_marginalize is not None else self.config.do_marginalize
reduce_loss = reduce_loss if reduce_loss is not None else self.config.reduce_loss
if labels is not None:
if decoder_input_ids is None:
decoder_input_ids = labels
use_cache = False
outputs = self.rag(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_outputs=encoder_outputs,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
output_retrieved=output_retrieved,
n_docs=n_docs,
)
loss = None
logits = outputs.logits
if labels is not None:
assert decoder_input_ids is not None
loss = self.get_nll(
outputs.logits,
outputs.doc_scores,
labels,
reduce_loss=reduce_loss,
epsilon=self.config.label_smoothing,
n_docs=n_docs,
)
if do_marginalize:
logits = self.marginalize(logits, outputs.doc_scores, n_docs)
return RetrievAugLMMarginOutput(
loss=loss,
logits=logits,
doc_scores=outputs.doc_scores,
past_key_values=outputs.past_key_values,
context_input_ids=outputs.context_input_ids,
context_attention_mask=outputs.context_attention_mask,
retrieved_doc_embeds=outputs.retrieved_doc_embeds,
retrieved_doc_ids=outputs.retrieved_doc_ids,
question_encoder_last_hidden_state=outputs.question_encoder_last_hidden_state,
question_enc_hidden_states=outputs.question_enc_hidden_states,
question_enc_attentions=outputs.question_enc_attentions,
generator_enc_last_hidden_state=outputs.generator_enc_last_hidden_state,
generator_enc_hidden_states=outputs.generator_enc_hidden_states,
generator_enc_attentions=outputs.generator_enc_attentions,
generator_dec_hidden_states=outputs.generator_dec_hidden_states,
generator_dec_attentions=outputs.generator_dec_attentions,
generator_cross_attentions=outputs.generator_cross_attentions,
)
@torch.no_grad()
def generate(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
context_input_ids: Optional[torch.LongTensor] = None,
context_attention_mask: Optional[torch.LongTensor] = None,
doc_scores: Optional[torch.FloatTensor] = None,
n_docs: Optional[int] = None,
generation_config: Optional[GenerationConfig] = None,
prefix_allowed_tokens_fn: Callable[[int, torch.Tensor], List[int]] = None,
logits_processor: Optional[LogitsProcessorList] = LogitsProcessorList(),
stopping_criteria: Optional[StoppingCriteriaList] = StoppingCriteriaList(),
**kwargs,
) -> torch.LongTensor:
"""
Implements RAG token decoding.
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
The sequence used as a prompt for the generation. If `input_ids` is not passed, then
`context_input_ids` has to be provided.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
context_input_ids (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input IDs post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model has is not initialized with a `retriever`, `context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`].
context_attention_mask (`torch.LongTensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model has is not initialized with a `retriever`, `context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`].
doc_scores (`torch.FloatTensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
If the model has is not initialized with a `retriever`, `context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`].
n_docs (`int`, *optional*, defaults to `config.n_docs`)
Number of documents to retrieve and/or number of documents for which to generate an answer.
generation_config (`~generation.GenerationConfig`, *optional*):
The generation configuration to be used as base parametrization for the generation call. `**kwargs`
passed to generate matching the attributes of `generation_config` will override them. If
`generation_config` is not provided, the default will be used, which has the following loading
priority: 1) from the `generation_config.json` model file, if it exists; 2) from the model
configuration. Please note that unspecified parameters will inherit [`~generation.GenerationConfig`]'s
default values, whose documentation should be checked to parameterize generation.
prefix_allowed_tokens_fn (`Callable[[int, torch.Tensor], List[int]]`, *optional*):
If provided, this function constraints the beam search to allowed tokens only at each step. If not
provided no constraint is applied. This function takes 2 arguments `inputs_ids` and the batch ID
`batch_id`. It has to return a list with the allowed tokens for the next generation step conditioned on
the previously generated tokens `inputs_ids` and the batch ID `batch_id`. This argument is useful for
constrained generation conditioned on the prefix, as described in [Autoregressive Entity
Retrieval](https://arxiv.org/abs/2010.00904).
logits_processor (`LogitsProcessorList`, *optional*):
Custom logits processors that complement the default logits processors built from arguments and a
model's config. If a logit processor is passed that is already created with the arguments or a model's
config an error is thrown.
stopping_criteria (`StoppingCriteriaList`, *optional*):
Custom stopping criteria that complement the default stopping criteria built from arguments and a
model's config. If a stopping criteria is passed that is already created with the arguments or a
model's config an error is thrown.
kwargs (`Dict[str, Any]`, *optional*):
Ad hoc parametrization of `generate_config` and/or additional model-specific kwargs that will be
forwarded to the `forward` function of the model.
Return:
`torch.LongTensor` of shape `(batch_size * num_return_sequences, sequence_length)`: The generated
sequences. The second dimension (sequence_length) is either equal to `max_length` or shorter if all batches
finished early due to the `eos_token_id`.
"""
# Handle `generation_config` and kwargs that might update it
if generation_config is None:
generation_config = self.generation_config
generation_config = copy.deepcopy(generation_config)
model_kwargs = generation_config.update(**kwargs) # All unused kwargs must be model kwargs
# set default parameters
n_docs = n_docs if n_docs is not None else self.config.n_docs
# retrieve docs
if self.retriever is not None and context_input_ids is None:
question_hidden_states = self.question_encoder(input_ids, attention_mask=attention_mask)[0]
out = self.retriever(
input_ids,
question_hidden_states.cpu().detach().to(torch.float32).numpy(),
prefix=self.generator.config.prefix,
n_docs=n_docs,
return_tensors="pt",
)
context_input_ids, context_attention_mask, retrieved_doc_embeds = (
out["context_input_ids"],
out["context_attention_mask"],
out["retrieved_doc_embeds"],
)
# set to correct device
retrieved_doc_embeds = retrieved_doc_embeds.to(question_hidden_states)
context_input_ids = context_input_ids.to(input_ids)
context_attention_mask = context_attention_mask.to(input_ids)
# compute doc_scores
doc_scores = torch.bmm(question_hidden_states.unsqueeze(1), retrieved_doc_embeds.transpose(1, 2)).squeeze(
1
)
assert (context_input_ids.shape[0] % n_docs) == 0, (
f" The first dimension of `context_input_ids` should be a multiple of `n_docs`={n_docs}, but is"
f" {context_input_ids.shape[0]}."
)
# batch_size
batch_size = context_input_ids.shape[0] // n_docs
encoder = self.rag.generator.get_encoder()
encoder_outputs = encoder(input_ids=context_input_ids, attention_mask=context_attention_mask, return_dict=True)
input_ids = torch.full(
(batch_size * generation_config.num_beams, 1),
generation_config.decoder_start_token_id,
dtype=torch.long,
device=next(self.parameters()).device,
)
input_ids_seq_length = input_ids.shape[-1]
last_hidden_state = encoder_outputs["last_hidden_state"]
def extend_enc_output(tensor, num_beams=None):
# split into `batch_size`, `num_beams`, `num_docs`
tensor = tensor[None, None, :].reshape((batch_size, 1, n_docs) + tensor.shape[1:])
# repeat same last hidden states over `num_beams` dimension
tensor = tensor.expand((batch_size, num_beams, n_docs) + tensor.shape[3:])
# merge `batch_size`, `num_beams`, `num_docs` dims again
return tensor.reshape((batch_size * num_beams * n_docs,) + tensor.shape[3:])
# correctly extend last_hidden_state and attention mask
context_attention_mask = extend_enc_output(context_attention_mask, num_beams=generation_config.num_beams)
encoder_outputs["last_hidden_state"] = extend_enc_output(
last_hidden_state, num_beams=generation_config.num_beams
)
doc_scores = doc_scores.repeat_interleave(generation_config.num_beams, dim=0)
# define start_len & additional parameters
model_kwargs["doc_scores"] = doc_scores
model_kwargs["encoder_outputs"] = encoder_outputs
model_kwargs["attention_mask"] = context_attention_mask
model_kwargs["n_docs"] = n_docs
pre_processor = self._get_logits_processor(
generation_config=generation_config,
input_ids_seq_length=input_ids_seq_length,
encoder_input_ids=context_input_ids,
prefix_allowed_tokens_fn=prefix_allowed_tokens_fn,
logits_processor=logits_processor,
)
if generation_config.num_beams == 1:
if generation_config.num_return_sequences > 1:
raise ValueError(
f"num_return_sequences has to be 1, but is {generation_config.num_return_sequences} when doing"
" greedy search."
)
return self.greedy_search(
input_ids,
logits_processor=pre_processor,
max_length=generation_config.max_length,
pad_token_id=generation_config.pad_token_id,
eos_token_id=generation_config.eos_token_id,
**model_kwargs,
)
elif generation_config.num_beams > 1:
if generation_config.num_return_sequences > generation_config.num_beams:
raise ValueError("`num_return_sequences` has to be smaller or equal to `num_beams`.")
beam_scorer = BeamSearchScorer(
batch_size=batch_size,
num_beams=generation_config.num_beams,
device=self.device,
length_penalty=generation_config.length_penalty,
do_early_stopping=generation_config.early_stopping,
num_beam_hyps_to_keep=generation_config.num_return_sequences,
max_length=generation_config.max_length,
)
return self.beam_search(
input_ids,
beam_scorer,
logits_processor=pre_processor,
max_length=generation_config.max_length,
pad_token_id=generation_config.pad_token_id,
eos_token_id=generation_config.eos_token_id,
**model_kwargs,
)
else:
raise ValueError(
f"`num_beams` has to be an integer strictly superior to 0 (≥ 1), but is {generation_config.num_beams}"
)
def get_input_embeddings(self):
return self.rag.generator.get_input_embeddings()
def get_output_embeddings(self):
return self.rag.generator.get_output_embeddings()
def set_output_embeddings(self, new_embeddings):
return self.rag.generator.set_output_embeddings(new_embeddings)
def shift_tokens_right(self, input_ids, start_token_id=None):
"""Shift input ids one token to the right, and pad with start_token_id"""
if start_token_id is None:
start_token_id = self.config.decoder_start_token_id
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
shifted_input_ids[:, 0] = start_token_id
return shifted_input_ids
def get_nll(self, seq_logits, doc_scores, target, reduce_loss=False, epsilon=0.0, n_docs=None):
n_docs = n_docs if n_docs is not None else self.config.n_docs
# shift tokens left
target = torch.cat(
[target[:, 1:], target.new(target.shape[0], 1).fill_(self.config.generator.pad_token_id)], 1
)
def _mask_pads(ll, smooth_obj):
pad_mask = target.eq(self.config.generator.pad_token_id)
if pad_mask.any():
ll.masked_fill_(pad_mask, 0.0)
smooth_obj.masked_fill_(pad_mask, 0.0)
return ll.squeeze(-1), smooth_obj.squeeze(-1)
rag_logprobs = self.marginalize(seq_logits, doc_scores, n_docs)
target = target.unsqueeze(-1)
assert target.dim() == rag_logprobs.dim()
ll = rag_logprobs.gather(dim=-1, index=target)
smooth_obj = rag_logprobs.sum(dim=-1, keepdim=True) # total sum of all (normalised) logits
ll, smooth_obj = _mask_pads(ll, smooth_obj)
ll = ll.sum(1) # sum over tokens
smooth_obj = smooth_obj.sum(1)
nll_loss = -ll
smooth_loss = -smooth_obj
if reduce_loss:
nll_loss = nll_loss.sum()
smooth_loss = smooth_loss.sum()
eps_i = epsilon / rag_logprobs.size(-1)
loss = (1.0 - epsilon) * nll_loss + eps_i * smooth_loss
return loss
| 86,078 | 51.679927 | 175 | py |
transformers | transformers-main/src/transformers/models/rag/retrieval_rag.py | # coding=utf-8
# Copyright 2020, The RAG Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""RAG Retriever model implementation."""
import os
import pickle
import time
from typing import Iterable, List, Optional, Tuple
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer
from ...tokenization_utils_base import BatchEncoding
from ...utils import cached_file, is_datasets_available, is_faiss_available, logging, requires_backends
from .configuration_rag import RagConfig
from .tokenization_rag import RagTokenizer
if is_datasets_available():
from datasets import Dataset, load_dataset, load_from_disk
if is_faiss_available():
import faiss
logger = logging.get_logger(__name__)
LEGACY_INDEX_PATH = "https://storage.googleapis.com/huggingface-nlp/datasets/wiki_dpr/"
class Index:
"""
A base class for the Indices encapsulated by the [`RagRetriever`].
"""
def get_doc_dicts(self, doc_ids: np.ndarray) -> List[dict]:
"""
Returns a list of dictionaries, containing titles and text of the retrieved documents.
Args:
doc_ids (`np.ndarray` of shape `(batch_size, n_docs)`):
A tensor of document indices.
"""
raise NotImplementedError
def get_top_docs(self, question_hidden_states: np.ndarray, n_docs=5) -> Tuple[np.ndarray, np.ndarray]:
"""
For each query in the batch, retrieves `n_docs` documents.
Args:
question_hidden_states (`np.ndarray` of shape `(batch_size, vector_size)`):
An array of query vectors.
n_docs (`int`):
The number of docs retrieved per query.
Returns:
`np.ndarray` of shape `(batch_size, n_docs)`: A tensor of indices of retrieved documents. `np.ndarray` of
shape `(batch_size, vector_size)`: A tensor of vector representations of retrieved documents.
"""
raise NotImplementedError
def is_initialized(self):
"""
Returns `True` if index is already initialized.
"""
raise NotImplementedError
def init_index(self):
"""
A function responsible for loading the index into memory. Should be called only once per training run of a RAG
model. E.g. if the model is trained on multiple GPUs in a distributed setup, only one of the workers will load
the index.
"""
raise NotImplementedError
class LegacyIndex(Index):
"""
An index which can be deserialized from the files built using https://github.com/facebookresearch/DPR. We use
default faiss index parameters as specified in that repository.
Args:
vector_size (`int`):
The dimension of indexed vectors.
index_path (`str`):
A path to a *directory* containing index files compatible with [`~models.rag.retrieval_rag.LegacyIndex`]
"""
INDEX_FILENAME = "hf_bert_base.hnswSQ8_correct_phi_128.c_index"
PASSAGE_FILENAME = "psgs_w100.tsv.pkl"
def __init__(self, vector_size, index_path):
self.index_id_to_db_id = []
self.index_path = index_path
self.passages = self._load_passages()
self.vector_size = vector_size
self.index = None
self._index_initialized = False
def _resolve_path(self, index_path, filename):
is_local = os.path.isdir(index_path)
try:
# Load from URL or cache if already cached
resolved_archive_file = cached_file(index_path, filename)
except EnvironmentError:
msg = (
f"Can't load '{filename}'. Make sure that:\n\n"
f"- '{index_path}' is a correct remote path to a directory containing a file named {filename}\n\n"
f"- or '{index_path}' is the correct path to a directory containing a file named {filename}.\n\n"
)
raise EnvironmentError(msg)
if is_local:
logger.info(f"loading file {resolved_archive_file}")
else:
logger.info(f"loading file {filename} from cache at {resolved_archive_file}")
return resolved_archive_file
def _load_passages(self):
logger.info(f"Loading passages from {self.index_path}")
passages_path = self._resolve_path(self.index_path, self.PASSAGE_FILENAME)
with open(passages_path, "rb") as passages_file:
passages = pickle.load(passages_file)
return passages
def _deserialize_index(self):
logger.info(f"Loading index from {self.index_path}")
resolved_index_path = self._resolve_path(self.index_path, self.INDEX_FILENAME + ".index.dpr")
self.index = faiss.read_index(resolved_index_path)
resolved_meta_path = self._resolve_path(self.index_path, self.INDEX_FILENAME + ".index_meta.dpr")
with open(resolved_meta_path, "rb") as metadata_file:
self.index_id_to_db_id = pickle.load(metadata_file)
assert (
len(self.index_id_to_db_id) == self.index.ntotal
), "Deserialized index_id_to_db_id should match faiss index size"
def is_initialized(self):
return self._index_initialized
def init_index(self):
index = faiss.IndexHNSWFlat(self.vector_size + 1, 512)
index.hnsw.efSearch = 128
index.hnsw.efConstruction = 200
self.index = index
self._deserialize_index()
self._index_initialized = True
def get_doc_dicts(self, doc_ids: np.array):
doc_list = []
for doc_ids_i in doc_ids:
ids = [str(int(doc_id)) for doc_id in doc_ids_i]
docs = [self.passages[doc_id] for doc_id in ids]
doc_list.append(docs)
doc_dicts = []
for docs in doc_list:
doc_dict = {}
doc_dict["title"] = [doc[1] for doc in docs]
doc_dict["text"] = [doc[0] for doc in docs]
doc_dicts.append(doc_dict)
return doc_dicts
def get_top_docs(self, question_hidden_states: np.ndarray, n_docs=5) -> Tuple[np.ndarray, np.ndarray]:
aux_dim = np.zeros(len(question_hidden_states), dtype="float32").reshape(-1, 1)
query_nhsw_vectors = np.hstack((question_hidden_states, aux_dim))
_, docs_ids = self.index.search(query_nhsw_vectors, n_docs)
vectors = [[self.index.reconstruct(int(doc_id))[:-1] for doc_id in doc_ids] for doc_ids in docs_ids]
ids = [[int(self.index_id_to_db_id[doc_id]) for doc_id in doc_ids] for doc_ids in docs_ids]
return np.array(ids), np.array(vectors)
class HFIndexBase(Index):
def __init__(self, vector_size, dataset, index_initialized=False):
self.vector_size = vector_size
self.dataset = dataset
self._index_initialized = index_initialized
self._check_dataset_format(with_index=index_initialized)
dataset.set_format("numpy", columns=["embeddings"], output_all_columns=True, dtype="float32")
def _check_dataset_format(self, with_index: bool):
if not isinstance(self.dataset, Dataset):
raise ValueError(f"Dataset should be a datasets.Dataset object, but got {type(self.dataset)}")
if len({"title", "text", "embeddings"} - set(self.dataset.column_names)) > 0:
raise ValueError(
"Dataset should be a dataset with the following columns: "
"title (str), text (str) and embeddings (arrays of dimension vector_size), "
f"but got columns {self.dataset.column_names}"
)
if with_index and "embeddings" not in self.dataset.list_indexes():
raise ValueError(
"Missing faiss index in the dataset. Make sure you called `dataset.add_faiss_index` to compute it "
"or `dataset.load_faiss_index` to load one from the disk."
)
def init_index(self):
raise NotImplementedError()
def is_initialized(self):
return self._index_initialized
def get_doc_dicts(self, doc_ids: np.ndarray) -> List[dict]:
return [self.dataset[doc_ids[i].tolist()] for i in range(doc_ids.shape[0])]
def get_top_docs(self, question_hidden_states: np.ndarray, n_docs=5) -> Tuple[np.ndarray, np.ndarray]:
_, ids = self.dataset.search_batch("embeddings", question_hidden_states, n_docs)
docs = [self.dataset[[i for i in indices if i >= 0]] for indices in ids]
vectors = [doc["embeddings"] for doc in docs]
for i in range(len(vectors)):
if len(vectors[i]) < n_docs:
vectors[i] = np.vstack([vectors[i], np.zeros((n_docs - len(vectors[i]), self.vector_size))])
return np.array(ids), np.array(vectors) # shapes (batch_size, n_docs) and (batch_size, n_docs, d)
class CanonicalHFIndex(HFIndexBase):
"""
A wrapper around an instance of [`~datasets.Datasets`]. If `index_path` is set to `None`, we load the pre-computed
index available with the [`~datasets.arrow_dataset.Dataset`], otherwise, we load the index from the indicated path
on disk.
Args:
vector_size (`int`): the dimension of the passages embeddings used by the index
dataset_name (`str`, optional, defaults to `wiki_dpr`):
A dataset identifier of the indexed dataset on HuggingFace AWS bucket (list all available datasets and ids
with `datasets.list_datasets()`).
dataset_split (`str`, optional, defaults to `train`)
Which split of the `dataset` to load.
index_name (`str`, optional, defaults to `train`)
The index_name of the index associated with the `dataset`. The index loaded from `index_path` will be saved
under this name.
index_path (`str`, optional, defaults to `None`)
The path to the serialized faiss index on disk.
use_dummy_dataset (`bool`, optional, defaults to `False`):
If True, use the dummy configuration of the dataset for tests.
"""
def __init__(
self,
vector_size: int,
dataset_name: str = "wiki_dpr",
dataset_split: str = "train",
index_name: Optional[str] = None,
index_path: Optional[str] = None,
use_dummy_dataset=False,
):
if int(index_path is None) + int(index_name is None) != 1:
raise ValueError("Please provide `index_name` or `index_path`.")
self.dataset_name = dataset_name
self.dataset_split = dataset_split
self.index_name = index_name
self.index_path = index_path
self.use_dummy_dataset = use_dummy_dataset
logger.info(f"Loading passages from {self.dataset_name}")
dataset = load_dataset(
self.dataset_name, with_index=False, split=self.dataset_split, dummy=self.use_dummy_dataset
)
super().__init__(vector_size, dataset, index_initialized=False)
def init_index(self):
if self.index_path is not None:
logger.info(f"Loading index from {self.index_path}")
self.dataset.load_faiss_index("embeddings", file=self.index_path)
else:
logger.info(f"Loading index from {self.dataset_name} with index name {self.index_name}")
self.dataset = load_dataset(
self.dataset_name,
with_embeddings=True,
with_index=True,
split=self.dataset_split,
index_name=self.index_name,
dummy=self.use_dummy_dataset,
)
self.dataset.set_format("numpy", columns=["embeddings"], output_all_columns=True)
self._index_initialized = True
class CustomHFIndex(HFIndexBase):
"""
A wrapper around an instance of [`~datasets.Datasets`]. The dataset and the index are both loaded from the
indicated paths on disk.
Args:
vector_size (`int`): the dimension of the passages embeddings used by the index
dataset_path (`str`):
The path to the serialized dataset on disk. The dataset should have 3 columns: title (str), text (str) and
embeddings (arrays of dimension vector_size)
index_path (`str`)
The path to the serialized faiss index on disk.
"""
def __init__(self, vector_size: int, dataset, index_path=None):
super().__init__(vector_size, dataset, index_initialized=index_path is None)
self.index_path = index_path
@classmethod
def load_from_disk(cls, vector_size, dataset_path, index_path):
logger.info(f"Loading passages from {dataset_path}")
if dataset_path is None or index_path is None:
raise ValueError(
"Please provide `dataset_path` and `index_path` after calling `dataset.save_to_disk(dataset_path)` "
"and `dataset.get_index('embeddings').save(index_path)`."
)
dataset = load_from_disk(dataset_path)
return cls(vector_size=vector_size, dataset=dataset, index_path=index_path)
def init_index(self):
if not self.is_initialized():
logger.info(f"Loading index from {self.index_path}")
self.dataset.load_faiss_index("embeddings", file=self.index_path)
self._index_initialized = True
class RagRetriever:
"""
Retriever used to get documents from vector queries. It retrieves the documents embeddings as well as the documents
contents, and it formats them to be used with a RagModel.
Args:
config ([`RagConfig`]):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which
`Index` to build. You can load your own custom dataset with `config.index_name="custom"` or use a canonical
one (default) from the datasets library with `config.index_name="wiki_dpr"` for example.
question_encoder_tokenizer ([`PreTrainedTokenizer`]):
The tokenizer that was used to tokenize the question. It is used to decode the question and then use the
generator_tokenizer.
generator_tokenizer ([`PreTrainedTokenizer`]):
The tokenizer used for the generator part of the RagModel.
index ([`~models.rag.retrieval_rag.Index`], optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
Examples:
```python
>>> # To load the default "wiki_dpr" dataset with 21M passages from wikipedia (index name is 'compressed' or 'exact')
>>> from transformers import RagRetriever
>>> retriever = RagRetriever.from_pretrained(
... "facebook/dpr-ctx_encoder-single-nq-base", dataset="wiki_dpr", index_name="compressed"
... )
>>> # To load your own indexed dataset built with the datasets library. More info on how to build the indexed dataset in examples/rag/use_own_knowledge_dataset.py
>>> from transformers import RagRetriever
>>> dataset = (
... ...
... ) # dataset must be a datasets.Datasets object with columns "title", "text" and "embeddings", and it must have a faiss index
>>> retriever = RagRetriever.from_pretrained("facebook/dpr-ctx_encoder-single-nq-base", indexed_dataset=dataset)
>>> # To load your own indexed dataset built with the datasets library that was saved on disk. More info in examples/rag/use_own_knowledge_dataset.py
>>> from transformers import RagRetriever
>>> dataset_path = "path/to/my/dataset" # dataset saved via *dataset.save_to_disk(...)*
>>> index_path = "path/to/my/index.faiss" # faiss index saved via *dataset.get_index("embeddings").save(...)*
>>> retriever = RagRetriever.from_pretrained(
... "facebook/dpr-ctx_encoder-single-nq-base",
... index_name="custom",
... passages_path=dataset_path,
... index_path=index_path,
... )
>>> # To load the legacy index built originally for Rag's paper
>>> from transformers import RagRetriever
>>> retriever = RagRetriever.from_pretrained("facebook/dpr-ctx_encoder-single-nq-base", index_name="legacy")
```"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, index=None, init_retrieval=True):
self._init_retrieval = init_retrieval
requires_backends(self, ["datasets", "faiss"])
super().__init__()
self.index = index or self._build_index(config)
self.generator_tokenizer = generator_tokenizer
self.question_encoder_tokenizer = question_encoder_tokenizer
self.n_docs = config.n_docs
self.batch_size = config.retrieval_batch_size
self.config = config
if self._init_retrieval:
self.init_retrieval()
self.ctx_encoder_tokenizer = None
self.return_tokenized_docs = False
@staticmethod
def _build_index(config):
if config.index_name == "legacy":
return LegacyIndex(
config.retrieval_vector_size,
config.index_path or LEGACY_INDEX_PATH,
)
elif config.index_name == "custom":
return CustomHFIndex.load_from_disk(
vector_size=config.retrieval_vector_size,
dataset_path=config.passages_path,
index_path=config.index_path,
)
else:
return CanonicalHFIndex(
vector_size=config.retrieval_vector_size,
dataset_name=config.dataset,
dataset_split=config.dataset_split,
index_name=config.index_name,
index_path=config.index_path,
use_dummy_dataset=config.use_dummy_dataset,
)
@classmethod
def from_pretrained(cls, retriever_name_or_path, indexed_dataset=None, **kwargs):
requires_backends(cls, ["datasets", "faiss"])
config = kwargs.pop("config", None) or RagConfig.from_pretrained(retriever_name_or_path, **kwargs)
rag_tokenizer = RagTokenizer.from_pretrained(retriever_name_or_path, config=config)
question_encoder_tokenizer = rag_tokenizer.question_encoder
generator_tokenizer = rag_tokenizer.generator
if indexed_dataset is not None:
config.index_name = "custom"
index = CustomHFIndex(config.retrieval_vector_size, indexed_dataset)
else:
index = cls._build_index(config)
return cls(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
)
def save_pretrained(self, save_directory):
if isinstance(self.index, CustomHFIndex):
if self.config.index_path is None:
index_path = os.path.join(save_directory, "hf_dataset_index.faiss")
self.index.dataset.get_index("embeddings").save(index_path)
self.config.index_path = index_path
if self.config.passages_path is None:
passages_path = os.path.join(save_directory, "hf_dataset")
# datasets don't support save_to_disk with indexes right now
faiss_index = self.index.dataset._indexes.pop("embeddings")
self.index.dataset.save_to_disk(passages_path)
self.index.dataset._indexes["embeddings"] = faiss_index
self.config.passages_path = passages_path
self.config.save_pretrained(save_directory)
rag_tokenizer = RagTokenizer(
question_encoder=self.question_encoder_tokenizer,
generator=self.generator_tokenizer,
)
rag_tokenizer.save_pretrained(save_directory)
def init_retrieval(self):
"""
Retriever initialization function. It loads the index into memory.
"""
logger.info("initializing retrieval")
self.index.init_index()
def postprocess_docs(self, docs, input_strings, prefix, n_docs, return_tensors=None):
r"""
Postprocessing retrieved `docs` and combining them with `input_strings`.
Args:
docs (`dict`):
Retrieved documents.
input_strings (`str`):
Input strings decoded by `preprocess_query`.
prefix (`str`):
Prefix added at the beginning of each input, typically used with T5-based models.
Return:
`tuple(tensors)`: a tuple consisting of two elements: contextualized `input_ids` and a compatible
`attention_mask`.
"""
def cat_input_and_doc(doc_title, doc_text, input_string, prefix):
# TODO(Patrick): if we train more RAG models, I want to put the input first to take advantage of effortless truncation
# TODO(piktus): better handling of truncation
if doc_title.startswith('"'):
doc_title = doc_title[1:]
if doc_title.endswith('"'):
doc_title = doc_title[:-1]
if prefix is None:
prefix = ""
out = (prefix + doc_title + self.config.title_sep + doc_text + self.config.doc_sep + input_string).replace(
" ", " "
)
return out
rag_input_strings = [
cat_input_and_doc(
docs[i]["title"][j],
docs[i]["text"][j],
input_strings[i],
prefix,
)
for i in range(len(docs))
for j in range(n_docs)
]
contextualized_inputs = self.generator_tokenizer.batch_encode_plus(
rag_input_strings,
max_length=self.config.max_combined_length,
return_tensors=return_tensors,
padding="max_length",
truncation=True,
)
return contextualized_inputs["input_ids"], contextualized_inputs["attention_mask"]
def _chunk_tensor(self, t: Iterable, chunk_size: int) -> List[Iterable]:
return [t[i : i + chunk_size] for i in range(0, len(t), chunk_size)]
def _main_retrieve(self, question_hidden_states: np.ndarray, n_docs: int) -> Tuple[np.ndarray, np.ndarray]:
question_hidden_states_batched = self._chunk_tensor(question_hidden_states, self.batch_size)
ids_batched = []
vectors_batched = []
for question_hidden_states in question_hidden_states_batched:
start_time = time.time()
ids, vectors = self.index.get_top_docs(question_hidden_states, n_docs)
logger.debug(
f"index search time: {time.time() - start_time} sec, batch size {question_hidden_states.shape}"
)
ids_batched.extend(ids)
vectors_batched.extend(vectors)
return (
np.array(ids_batched),
np.array(vectors_batched),
) # shapes (batch_size, n_docs) and (batch_size, n_docs, d)
def retrieve(self, question_hidden_states: np.ndarray, n_docs: int) -> Tuple[np.ndarray, List[dict]]:
"""
Retrieves documents for specified `question_hidden_states`.
Args:
question_hidden_states (`np.ndarray` of shape `(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (`int`):
The number of docs retrieved per query.
Return:
`Tuple[np.ndarray, np.ndarray, List[dict]]`: A tuple with the following objects:
- **retrieved_doc_embeds** (`np.ndarray` of shape `(batch_size, n_docs, dim)`) -- The retrieval embeddings
of the retrieved docs per query.
- **doc_ids** (`np.ndarray` of shape `(batch_size, n_docs)`) -- The ids of the documents in the index
- **doc_dicts** (`List[dict]`): The `retrieved_doc_embeds` examples per query.
"""
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
return retrieved_doc_embeds, doc_ids, self.index.get_doc_dicts(doc_ids)
def set_ctx_encoder_tokenizer(self, ctx_encoder_tokenizer: PreTrainedTokenizer):
# used in end2end retriever training
self.ctx_encoder_tokenizer = ctx_encoder_tokenizer
self.return_tokenized_docs = True
def __call__(
self,
question_input_ids: List[List[int]],
question_hidden_states: np.ndarray,
prefix=None,
n_docs=None,
return_tensors=None,
) -> BatchEncoding:
"""
Retrieves documents for specified `question_hidden_states`.
Args:
question_input_ids (`List[List[int]]`) batch of input ids
question_hidden_states (`np.ndarray` of shape `(batch_size, vector_size)`:
A batch of query vectors to retrieve with.
prefix (`str`, *optional*):
The prefix used by the generator's tokenizer.
n_docs (`int`, *optional*):
The number of docs retrieved per query.
return_tensors (`str` or [`~utils.TensorType`], *optional*, defaults to "pt"):
If set, will return tensors instead of list of python integers. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return Numpy `np.ndarray` objects.
Returns: [`BatchEncoding`]: A [`BatchEncoding`] with the following fields:
- **context_input_ids** -- List of token ids to be fed to a model.
[What are input IDs?](../glossary#input-ids)
- **context_attention_mask** -- List of indices specifying which tokens should be attended to by the model
(when `return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names`).
[What are attention masks?](../glossary#attention-mask)
- **retrieved_doc_embeds** -- List of embeddings of the retrieved documents
- **doc_ids** -- List of ids of the retrieved documents
"""
n_docs = n_docs if n_docs is not None else self.n_docs
prefix = prefix if prefix is not None else self.config.generator.prefix
retrieved_doc_embeds, doc_ids, docs = self.retrieve(question_hidden_states, n_docs)
input_strings = self.question_encoder_tokenizer.batch_decode(question_input_ids, skip_special_tokens=True)
context_input_ids, context_attention_mask = self.postprocess_docs(
docs, input_strings, prefix, n_docs, return_tensors=return_tensors
)
if self.return_tokenized_docs:
retrieved_doc_text = []
retrieved_doc_title = []
for b_idx in range(len(docs)):
for doc_idx in range(n_docs):
retrieved_doc_text.append(docs[b_idx]["text"][doc_idx])
retrieved_doc_title.append(docs[b_idx]["title"][doc_idx])
tokenized_docs = self.ctx_encoder_tokenizer(
retrieved_doc_title,
retrieved_doc_text,
truncation=True,
padding="longest",
return_tensors=return_tensors,
)
return BatchEncoding(
{
"context_input_ids": context_input_ids,
"context_attention_mask": context_attention_mask,
"retrieved_doc_embeds": retrieved_doc_embeds,
"doc_ids": doc_ids,
"tokenized_doc_ids": tokenized_docs["input_ids"],
"tokenized_doc_attention_mask": tokenized_docs["attention_mask"],
},
tensor_type=return_tensors,
)
else:
return BatchEncoding(
{
"context_input_ids": context_input_ids,
"context_attention_mask": context_attention_mask,
"retrieved_doc_embeds": retrieved_doc_embeds,
"doc_ids": doc_ids,
},
tensor_type=return_tensors,
)
| 28,510 | 42.661562 | 166 | py |
transformers | transformers-main/src/transformers/models/rag/modeling_tf_rag.py | # coding=utf-8
# Copyright 2020, The RAG Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TFRAG model implementation."""
from __future__ import annotations
import copy
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...configuration_utils import PretrainedConfig
from ...generation import TFLogitsProcessorList
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
shape_list,
unpack_inputs,
)
from ...utils import ModelOutput, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_rag import RagConfig
from .retrieval_rag import RagRetriever
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "RagConfig"
@dataclass
class TFRetrievAugLMMarginOutput(ModelOutput):
"""
Base class for retriever augmented marginalized models outputs.
Args:
loss (`tf.Tensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss.
logits (`tf.Tensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head. The score is possibly marginalized over all documents for
each vocabulary token.
past_key_values (`List[tf.Tensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `tf.Tensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size, num_heads,
sequence_length, embed_size_per_head)`).
Contains precomputed hidden-states (key and values in the attention blocks) of the decoder that can be used
(see `past_key_values` input) to speed up sequential decoding.
doc_scores (`tf.Tensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
retrieved_doc_embeds (`tf.Tensor` of shape `(batch_size, config.n_docs, hidden_size)`, *optional*, returned when *output_retrieved=True*):
Embedded documents retrieved by the retriever. Is used with `question_encoder_last_hidden_state` to compute
the `doc_scores`.
retrieved_doc_ids (`tf.Tensor` (int32) of shape `(batch_size, config.n_docs)`, *optional*, returned when *output_retrieved=True*):
The indexes of the embedded documents retrieved by the retriever.
context_input_ids (`tf.Tensor`(int32) of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input ids post-processed from the retrieved documents and the question encoder input_ids by the retriever.
context_attention_mask (`tf.Tensor` (int32) of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
question_encoder_last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden states at the output of the last layer of the question encoder pooled output of the
model.
question_enc_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings and one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden states of the question encoder at the output of each layer plus the initial embedding outputs.
question_enc_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the question encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_enc_last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the generator encoder of the model.
generator_enc_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings and one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator encoder at the output of each layer plus the initial embedding outputs.
generator_enc_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_dec_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings and one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator decoder at the output of each layer plus the initial embedding outputs.
generator_dec_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator decoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
"""
loss: tf.Tensor | None = None
logits: tf.Tensor = None
past_key_values: List[tf.Tensor] | None = None
doc_scores: tf.Tensor | None = None
retrieved_doc_embeds: tf.Tensor | None = None
retrieved_doc_ids: tf.Tensor | None = None
context_input_ids: tf.Tensor | None = None
context_attention_mask: tf.Tensor | None = None
question_encoder_last_hidden_state: tf.Tensor | None = None
question_enc_hidden_states: Tuple[tf.Tensor] | None = None
question_enc_attentions: Tuple[tf.Tensor] | None = None
generator_enc_last_hidden_state: tf.Tensor | None = None
generator_enc_hidden_states: Tuple[tf.Tensor] | None = None
generator_enc_attentions: Tuple[tf.Tensor] | None = None
generator_dec_hidden_states: Tuple[tf.Tensor] | None = None
generator_dec_attentions: Tuple[tf.Tensor] | None = None
@dataclass
class TFRetrievAugLMOutput(ModelOutput):
"""
Args:
logits (`tf.Tensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head. The score is possibly marginalized over all documents for
each vocabulary token.
past_key_values (`List[tf.Tensor]`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
List of `tf.Tensor` of length `config.n_layers`, with each tensor of shape `(2, batch_size, num_heads,
sequence_length, embed_size_per_head)`).
Contains precomputed hidden-states (key and values in the attention blocks) of the decoder that can be used
(see `past_key_values` input) to speed up sequential decoding.
doc_scores (`tf.Tensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
retrieved_doc_embeds (`tf.Tensor` of shape `(batch_size, config.n_docs, hidden_size)`, *optional*, returned when *output_retrieved=True*):
Embedded documents retrieved by the retriever. Is used with `question_encoder_last_hidden_state` to compute
the `doc_scores`.
retrieved_doc_ids (`tf.Tensor` of shape `(batch_size, config.n_docs)`, *optional*, returned when *output_retrieved=True*):
The indexes of the embedded documents retrieved by the retriever.
context_input_ids (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input ids post-processed from the retrieved documents and the question encoder input_ids by the retriever.
context_attention_mask (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
question_encoder_last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden states at the output of the last layer of the question encoder pooled output of the
model.
question_enc_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings and one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden states of the question encoder at the output of each layer plus the initial embedding outputs.
question_enc_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the question encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_enc_last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the generator encoder of the model.
generator_enc_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings and one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator encoder at the output of each layer plus the initial embedding outputs.
generator_enc_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator encoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
generator_dec_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings and one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden states of the generator decoder at the output of each layer plus the initial embedding outputs.
generator_dec_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the generator decoder, after the attention softmax, used to compute the weighted
average in the self-attention heads.
"""
logits: tf.Tensor = None
past_key_values: List[tf.Tensor] | None = None
doc_scores: tf.Tensor | None = None
retrieved_doc_embeds: tf.Tensor | None = None
retrieved_doc_ids: tf.Tensor | None = None
context_input_ids: tf.Tensor | None = None
context_attention_mask: tf.Tensor | None = None
question_encoder_last_hidden_state: tf.Tensor | None = None
question_enc_hidden_states: Tuple[tf.Tensor] | None = None
question_enc_attentions: Tuple[tf.Tensor] | None = None
generator_enc_last_hidden_state: tf.Tensor | None = None
generator_enc_hidden_states: Tuple[tf.Tensor] | None = None
generator_enc_attentions: Tuple[tf.Tensor] | None = None
generator_dec_hidden_states: Tuple[tf.Tensor] | None = None
generator_dec_attentions: Tuple[tf.Tensor] | None = None
class TFRagPreTrainedModel(TFPreTrainedModel):
r"""
RAG models were released with the paper [Retrieval-Augmented Generation for Knowledge-Intensive NLP
Tasks](https://arxiv.org/abs/2005.11401) by Patrick Lewis, Ethan Perez, Aleksandra Piktus et al.
RAG is a retriever augmented model and encapsulate three components: a question encoder, a dataset retriever and a
generator, the encoder and generator are trainable while the retriever is just an indexed dataset.
"""
config_class = RagConfig
base_model_prefix = "rag"
_keys_to_ignore_on_load_missing = [r"position_ids"]
@classmethod
def from_pretrained_question_encoder_generator(
cls,
question_encoder_pretrained_model_name_or_path: str = None,
generator_pretrained_model_name_or_path: str = None,
retriever: RagRetriever = None,
*model_args,
**kwargs,
) -> TFPreTrainedModel:
r"""
Instantiates an question encoder and a generator from one or two base classes of the library from pretrained
model checkpoints.
Params:
question_encoder_pretrained_model_name_or_path (`str`, *optional*):
Information necessary to initiate the question encoder. Can be either:
- A string with the *shortcut name* of a pretrained model to load from cache or download, e.g.,
`bert-base-uncased`.
- A string with the *identifier name* of a pretrained model that was user-uploaded to our S3, e.g.,
`dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~TFPreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *pytorch index checkpoint file* (e.g, `./pt_model/`). In this case,
`question_encoder_from_pt` should be set to `True`.
generator_pretrained_model_name_or_path (`str`, *optional*, defaults to `None`):
Information necessary to initiate the generator. Can be either:
- A string with the *shortcut name* of a pretrained model to load from cache or download, e.g.,
`t5-small`.
- A string with the *identifier name* of a pretrained model that was user-uploaded to our S3, e.g.,
`facebook/bart-base`.
- A path to a *directory* containing model weights saved using
[`~TFPreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *pytorch checkpoint file* (e.g, `./pt_model/`). In this case,
`generator_from_pt` should be set to `True`.
model_args (remaining positional arguments, *optional*):
All remaining positional arguments will be passed to the underlying model's `__init__` method.
retriever ([`RagRetriever`], *optional*):
The retriever to use.
kwargs (remaining dictionary of keyword arguments, *optional*):
Can be used to update the configuration object (after it being loaded) and initiate the model (e.g.,
`output_attentions=True`).
- To update the question_encoder configuration, use the prefix *question_encoder_* for each
configuration parameter.
- To update the generator configuration, use the prefix *generator_* for each configuration parameter.
- To update the parent model configuration, do not use a prefix for each configuration parameter.
Behaves differently depending on whether a `config` is provided or automatically loaded.
Example:
```python
>>> from transformers import RagRetriever, TFRagModel
>>> # initialize a RAG from two pretrained models.
>>> model = TFRagModel.from_pretrained_question_encoder_generator(
... "facebook/dpr-question_encoder-single-nq-base", "t5-small"
... )
>>> # alternatively, initialize from pytorch pretrained models can also be done
>>> model = TFRagModel.from_pretrained_question_encoder_generator(
... "facebook/dpr-question_encoder-single-nq-base",
... "facebook/bart-base",
... generator_from_pt=True,
... question_encoder_from_pt=True,
... )
>>> # saving model after fine-tuning
>>> model.save_pretrained("./rag")
>>> # load retriever
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-token-base", index_name="exact", use_dummy_dataset=True
... )
>>> # load fine-tuned model with retriever
>>> model = TFRagModel.from_pretrained("./rag", retriever=retriever)
```"""
kwargs_question_encoder = {
argument[len("question_encoder_") :]: value
for argument, value in kwargs.items()
if argument.startswith("question_encoder_")
}
kwargs_generator = {
argument[len("generator_") :]: value
for argument, value in kwargs.items()
if argument.startswith("generator_")
}
# remove question_encoder, generator kwargs from kwargs
for key in kwargs_question_encoder.keys():
del kwargs["question_encoder_" + key]
for key in kwargs_generator.keys():
del kwargs["generator_" + key]
# Load and initialize the question_encoder and generator
# The distinction between question_encoder and generator at the model level is made
# by the value of the flag `is_generator` that we need to set correctly.
question_encoder = kwargs_question_encoder.pop("model", None)
if question_encoder is None:
assert question_encoder_pretrained_model_name_or_path is not None, (
"If `model` is not defined as an argument, a `question_encoder_pretrained_model_name_or_path` has to"
" be defined"
)
from ..auto.modeling_tf_auto import TFAutoModel
if "config" not in kwargs_question_encoder:
from ..auto.configuration_auto import AutoConfig
question_encoder_config = AutoConfig.from_pretrained(question_encoder_pretrained_model_name_or_path)
kwargs_question_encoder["config"] = question_encoder_config
question_encoder = TFAutoModel.from_pretrained(
question_encoder_pretrained_model_name_or_path,
name="question_encoder",
load_weight_prefix=cls.load_weight_prefix,
*model_args,
**kwargs_question_encoder,
)
generator = kwargs_generator.pop("generator", None)
if generator is None:
assert generator_pretrained_model_name_or_path is not None, (
"If `generator_model` is not defined as an argument, a `generator_pretrained_model_name_or_path` has"
" to be defined"
)
from ..auto.modeling_tf_auto import TFAutoModelForSeq2SeqLM
if "config" not in kwargs_generator:
from ..auto.configuration_auto import AutoConfig
generator_config = AutoConfig.from_pretrained(generator_pretrained_model_name_or_path)
kwargs_generator["config"] = generator_config
generator = TFAutoModelForSeq2SeqLM.from_pretrained(
generator_pretrained_model_name_or_path,
name="generator",
load_weight_prefix=cls.load_weight_prefix,
**kwargs_generator,
)
# instantiate config with corresponding kwargs
config = kwargs.get("config", None)
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
return cls(question_encoder=question_encoder, generator=generator, config=config, retriever=retriever)
RAG_START_DOCSTRING = r"""
RAG is a sequence-to-sequence model which encapsulates two core components: a question encoder and a generator.
During a forward pass, we encode the input with the question encoder and pass it to the retriever to extract
relevant context documents. The documents are then prepended to the input. Such contextualized inputs is passed to
the generator.
The question encoder can be any *autoencoding* model, preferably [`TFDPRQuestionEncoder`], and the generator can be
any *seq2seq* model, preferably [`TFBartForConditionalGeneration`].
The model can be initialized with a [`RagRetriever`] for end-to-end generation or used in combination with the
outputs of a retriever in multiple steps---see examples for more details. The model is compatible any
*autoencoding* model as the `question_encoder` and any *seq2seq* model with language model head as the `generator`.
It has been tested with [`TFDPRQuestionEncoder`] as the `question_encoder` and [`TFBartForConditionalGeneration`]
as the `generator`.
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Tensorflow [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model)
subclass. Use it as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to
general usage and behavior.
The model is in a developing state as it is now fully supports in eager-mode only, and may not be exported in
SavedModel format.
Args:
config ([`RagConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
question_encoder ([`TFPreTrainedModel`]):
An encoder model compatible with the faiss index encapsulated by the `retriever`.
generator ([`TFPreTrainedModel`]):
A seq2seq model used as the generator in the RAG architecture.
retriever ([`RagRetriever`]):
A retriever class encapsulating a faiss index queried to obtain context documents for current inputs.
"""
RAG_FORWARD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. [`RagConfig`], used to initialize the model, specifies
which generator to use, it also specifies a compatible generator tokenizer. Use that tokenizer class to
obtain the indices.
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_outputs (`tuple(tuple(tf.Tensor)`, *optional*)
Tuple consists of (`generator_enc_last_hidden_state`, *optional*: `generator_enc_hidden_states`,
*optional*: `generator_enc_attentions`). `generator_enc_last_hidden_state` of shape `(batch_size, n_docs *
sequence_length, hidden_size)` is a sequence of hidden-states at the output of the last layer of the
generator's encoder.
Used by the ([`TFRagModel`]) model during decoding.
decoder_input_ids (`tf.Tensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Provide for generation tasks. `None` by default, construct as per instructions for the generator model
you're using with your RAG instance.
decoder_attention_mask (`torch.BoolTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
past_key_values (`tuple(tuple(tf.Tensor))`):
Tuple consists of two elements: `encoder_outputs` of the RAG model (see `encoder_outputs`) and
`past_key_values` of the underlying generator. Can be used to speed up decoding. `past_key_values` are used
in the ([`RagTokenForGeneration`]) model during decoding.
doc_scores (`tf.Tensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`. If the model has is not initialized with a `retriever` `doc_scores`
has to be provided to the forward pass. `doc_scores` can be computed via
`question_encoder_last_hidden_state` and `retrieved_doc_embeds`, see examples for more information.
context_input_ids (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input IDs post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model has is not initialized with a `retriever` ``context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`]. context_attention_mask
(`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when
*output_retrieved=True*): Attention mask post-processed from the retrieved documents and the question
encoder `input_ids` by the retriever.
If the model has is not initialized with a `retriever` `context_attention_mask` has to be provided to the
forward pass. `context_attention_mask` are returned by [`~RagRetriever.__call__`].
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
output_retrieved(`bool`, *optional*):
Whether or not to return the `retrieved_doc_embeds`, `retrieved_doc_ids`, `context_input_ids` and
`context_attention_mask`. See returned tensors for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`TFRetrievAugLMOutput`] instead of a plain tuple.
n_docs (`int`, *optional*, defaults to `config.n_docs``)
Number of documents to retrieve and/or number of documents for which to generate an answer.
"""
@add_start_docstrings_to_model_forward(RAG_START_DOCSTRING)
class TFRagModel(TFRagPreTrainedModel):
load_weight_prefix = "tf_rag_model_1"
def __init__(
self,
config: Optional[PretrainedConfig] = None,
question_encoder: Optional[TFPreTrainedModel] = None,
generator: Optional[TFPreTrainedModel] = None,
retriever: Optional[RagRetriever] = None,
load_weight_prefix: Optional[str] = None,
**kwargs,
):
assert config is not None or (
question_encoder is not None and generator is not None
), "Either a configuration or an question_encoder and a generator has to be provided."
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
else:
assert isinstance(config, self.config_class), f"config: {config} has to be of type {self.config_class}"
super().__init__(config, **kwargs)
if question_encoder is None:
from ..auto.modeling_tf_auto import TFAutoModel
question_encoder = TFAutoModel.from_config(config.question_encoder, name="question_encoder")
if generator is None:
from ..auto.modeling_tf_auto import TFAutoModelForSeq2SeqLM
load_weight_prefix = load_weight_prefix if load_weight_prefix is not None else self.load_weight_prefix
generator = TFAutoModelForSeq2SeqLM.from_config(
config.generator, name="generator", load_weight_prefix=load_weight_prefix + "/generator"
)
self.retriever = retriever
if self.retriever is not None:
assert isinstance(
retriever, RagRetriever
), f"`self.retriever` is of type {type(self.retriever)}, but should be of type `RagRetriever`"
self.retriever = retriever
self.question_encoder = question_encoder
self.generator = generator
def set_retriever(self, retriever: RagRetriever):
self.retriever = retriever
@unpack_inputs
@add_start_docstrings_to_model_forward(RAG_FORWARD_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFRetrievAugLMOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
doc_scores: np.ndarray | tf.Tensor | None = None,
context_input_ids: np.ndarray | tf.Tensor | None = None,
context_attention_mask: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
output_retrieved: Optional[bool] = None,
n_docs: Optional[int] = None,
return_dict: Optional[bool] = None,
training: bool = False,
**kwargs,
):
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RagRetriever, TFRagModel
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/rag-token-base")
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-token-base", index_name="exact", use_dummy_dataset=True
... )
>>> # initialize with RagRetriever to do everything in one forward call
>>> model = TFRagModel.from_pretrained("facebook/rag-token-base", retriever=retriever, from_pt=True)
>>> input_dict = tokenizer.prepare_seq2seq_batch(
... "How many people live in Paris?", "In Paris, there are 10 million people.", return_tensors="tf"
... )
>>> input_ids = input_dict["input_ids"]
>>> outputs = model(input_ids)
```"""
assert (
"decoder_cached_states" not in kwargs
), "Please use past_key_values to cache intermediate outputs" # from modeling_tf_bart.py
# aliasing to minimize code changing
n_docs = n_docs if n_docs is not None else self.config.n_docs
# whether retriever has to be used
has_to_retrieve = (
self.retriever is not None
and (context_input_ids is None or context_attention_mask is None or doc_scores is None)
and encoder_outputs is None
)
# encoder_outputs are pre-computed during RAG-token generation
if encoder_outputs is None:
if has_to_retrieve:
question_enc_outputs = self.question_encoder(
input_ids, attention_mask=attention_mask, return_dict=True, training=training
)
# see https://github.com/huggingface/transformers/blob/main/src/transformers/models/dpr/modeling_tf_dpr.py#L91
question_encoder_last_hidden_state = question_enc_outputs[
0
] # hidden states of question encoder => pooler_output
retriever_outputs = self.retriever(
input_ids,
question_encoder_last_hidden_state.numpy(),
prefix=self.generator.config.prefix,
n_docs=n_docs,
return_tensors="tf",
)
context_input_ids, context_attention_mask, retrieved_doc_embeds, retrieved_doc_ids = (
retriever_outputs["context_input_ids"],
retriever_outputs["context_attention_mask"],
retriever_outputs["retrieved_doc_embeds"],
retriever_outputs["doc_ids"],
)
context_input_ids = tf.cast(context_input_ids, tf.int32)
context_attention_mask = tf.cast(context_attention_mask, tf.int32)
retrieved_doc_embeds = tf.cast(retrieved_doc_embeds, tf.float32)
retrieved_doc_ids = tf.cast(retrieved_doc_ids, tf.int32)
# compute doc_scores
doc_scores = tf.squeeze(
tf.matmul(
tf.expand_dims(question_encoder_last_hidden_state, axis=1),
retrieved_doc_embeds,
transpose_b=True,
),
axis=1,
)
else:
assert context_input_ids is not None, (
"Make sure that `context_input_ids` are passed, if no `retriever` is set. Alternatively, you can"
" set a retriever using the `set_retriever(...)` function."
)
assert context_attention_mask is not None, (
"Make sure that `context_attention_mask` are passed, if no `retriever` is set. Alternatively, you"
" can set a retriever using the `set_retriever(...)` function."
)
assert doc_scores is not None, (
"Make sure that `doc_scores` are passed, if no `retriever` is set. Alternatively, you can set a"
" retriever using the `set_retriever(...)` function."
)
assert (
doc_scores is not None
), "Make sure that `doc_scores` are passed when passing `encoder_outputs` to the forward function."
assert (doc_scores.shape[1] % n_docs) == 0, (
f" The first dimension of `context_input_ids` should be a multiple of `n_docs`={n_docs}, but is"
f" {context_input_ids.shape[0]}."
)
# Decoder input without context documents
if decoder_input_ids is not None:
decoder_input_ids = tf.repeat(decoder_input_ids, n_docs, axis=0)
if decoder_attention_mask is not None:
decoder_attention_mask = tf.repeat(decoder_attention_mask, n_docs, axis=0)
gen_outputs = self.generator(
context_input_ids,
attention_mask=context_attention_mask,
encoder_outputs=encoder_outputs,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
return_dict=True,
training=training,
)
if not has_to_retrieve:
question_encoder_last_hidden_state = None
question_enc_hidden_states = None
question_enc_attentions = None
retrieved_doc_embeds = None
retrieved_doc_ids = None
else:
question_enc_hidden_states = question_enc_outputs.hidden_states
question_enc_attentions = question_enc_outputs.attentions
if not has_to_retrieve or not output_retrieved:
# don't output retrieved docs
context_input_ids = (None,)
context_attention_mask = None
retrieved_doc_embeds = None
retrieved_doc_ids = None
return TFRetrievAugLMOutput(
logits=gen_outputs.logits,
doc_scores=doc_scores,
past_key_values=gen_outputs.past_key_values,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
retrieved_doc_embeds=retrieved_doc_embeds,
retrieved_doc_ids=retrieved_doc_ids,
question_encoder_last_hidden_state=question_encoder_last_hidden_state,
question_enc_hidden_states=question_enc_hidden_states,
question_enc_attentions=question_enc_attentions,
generator_enc_last_hidden_state=gen_outputs.encoder_last_hidden_state,
generator_enc_hidden_states=gen_outputs.encoder_hidden_states,
generator_enc_attentions=gen_outputs.encoder_attentions,
generator_dec_hidden_states=gen_outputs.decoder_hidden_states,
generator_dec_attentions=gen_outputs.decoder_attentions,
)
@add_start_docstrings_to_model_forward(
"""
A TF RAG-token model implementation. It performs RAG-token specific marginalization in the forward pass.
""",
RAG_START_DOCSTRING,
)
class TFRagTokenForGeneration(TFRagPreTrainedModel, TFCausalLanguageModelingLoss):
load_weight_prefix = "tf_rag_token_for_generation_1/rag"
def __init__(
self,
config: Optional[PretrainedConfig] = None,
question_encoder: Optional[TFPreTrainedModel] = None,
generator: Optional[TFPreTrainedModel] = None,
retriever: Optional[RagRetriever] = None,
**kwargs,
):
assert config is not None or (
question_encoder is not None and generator is not None
), "Either a configuration or an encoder and a generator has to be provided."
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
super().__init__(config)
# instantiate model
self.rag = TFRagModel(
config=config,
question_encoder=question_encoder,
generator=generator,
retriever=retriever,
load_weight_prefix=self.load_weight_prefix,
name="rag",
)
def set_retriever(self, retriever: RagRetriever):
self.rag.retriever = retriever
# Adapted from https://github.com/huggingface/transformers/blob/main/src/transformers/modeling_tf_bart.py
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
use_cache=None,
encoder_outputs=None,
doc_scores=None,
n_docs=None,
**kwargs,
):
if past_key_values is not None:
# if past is defined use only last decoder_input_ids
decoder_input_ids = decoder_input_ids[:, -1:]
return {
"input_ids": None,
"encoder_outputs": encoder_outputs,
"doc_scores": doc_scores,
"context_attention_mask": attention_mask,
"decoder_input_ids": decoder_input_ids,
"past_key_values": past_key_values,
"use_cache": use_cache,
"do_marginalize": True,
"n_docs": n_docs,
}
@property
def retriever(self):
return self.rag.retriever
@property
def generator(self):
return self.rag.generator
@property
def question_encoder(self):
return self.rag.question_encoder
@staticmethod
def _gather_beams(nested, beam_indices, batch_axis=0):
"""
RAG-specific `_gather_beams`: gathers the beam slices indexed by beam_indices into new beam array. If the
nested tensor has a shape mismatch with the beam indices, then it means it is the cache. In that case, isolates
and takes care of the extra dimension for ndocs.
"""
def gather_fn(tensor):
is_rag_cache = tensor.shape[0] != beam_indices.shape[0]
if is_rag_cache:
n_docs = tensor.shape[0] // beam_indices.shape[0]
batch_size = beam_indices.shape[0]
# reshapes into (batch size, num beams, n_docs, ...), the cache format expected by RAG
tensor = tf.reshape(tensor, (batch_size, -1, n_docs, *tensor.shape[2:]))
gathered_tensor = tf.gather(params=tensor, indices=beam_indices, axis=1, batch_dims=1)
if is_rag_cache:
# reshapes back into the shape expected by beam search
gathered_tensor = tf.reshape(gathered_tensor, (batch_size * n_docs, -1, *gathered_tensor.shape[3:]))
return gathered_tensor
return tf.nest.map_structure(gather_fn, nested)
def marginalize(self, seq_logits, doc_scores, n_docs=None):
n_docs = n_docs if n_docs is not None else self.config.n_docs
# RAG-token marginalization
seq_logprobs = tf.nn.log_softmax(seq_logits, axis=-1)
seq_logprobs = tf.reshape(seq_logprobs, [seq_logits.shape[0] // n_docs, n_docs, -1, seq_logits.shape[-1]])
doc_logprobs = tf.nn.log_softmax(doc_scores, axis=1)
doc_logprobs = tf.expand_dims(doc_logprobs, axis=-1)
doc_logprobs = tf.expand_dims(doc_logprobs, axis=-1) # twice
log_prob_sum = seq_logprobs + doc_logprobs
return tf.reduce_logsumexp(log_prob_sum, axis=1)
@unpack_inputs
@add_start_docstrings_to_model_forward(RAG_FORWARD_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFRetrievAugLMMarginOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
doc_scores: np.ndarray | tf.Tensor | None = None,
context_input_ids: np.ndarray | tf.Tensor | None = None,
context_attention_mask: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
output_retrieved: Optional[bool] = None,
n_docs: Optional[int] = None,
do_marginalize: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
reduce_loss: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
**kwargs, # needs kwargs for generation
):
r"""
do_marginalize (`bool`, *optional*):
If `True`, the logits are marginalized over all documents by making use of
`torch.nn.functional.log_softmax`.
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss according to Rag-Token model formulation See
https://arxiv.org/pdf/2005.11401.pdf Section 2.1 for details about Rag-Token formulation. Indices should be
in `[0, ..., config.vocab_size - 1]`.
reduce_loss (`bool`, *optional*):
Only relevant if `labels` is passed. If `True`, the NLL loss is reduced using the `tf.Tensor.sum`
operation.
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Legacy dictionary, which is required so that model can use *generate()* function.
Returns:
Example:
```python
>>> import tensorflow as tf
>>> from transformers import AutoTokenizer, RagRetriever, TFRagTokenForGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/rag-token-nq")
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-token-nq", index_name="exact", use_dummy_dataset=True
... )
>>> # initialize with RagRetriever to do everything in one forward call
>>> model = TFRagTokenForGeneration.from_pretrained("facebook/rag-token-nq", retriever=retriever, from_pt=True)
>>> input_dict = tokenizer.prepare_seq2seq_batch(
... "How many people live in Paris?", "In Paris, there are 10 million people.", return_tensors="tf"
... )
>>> outputs = model(input_dict, output_retrieved=True)
>>> # or use retriever separately
>>> # 1. Encode
>>> input_ids = input_dict["input_ids"]
>>> question_hidden_states = model.question_encoder(input_ids)[0]
>>> # 2. Retrieve
>>> docs_dict = retriever(input_ids.numpy(), question_hidden_states.numpy(), return_tensors="tf")
>>> doc_scores = tf.squeeze(
... tf.matmul(
... tf.expand_dims(question_hidden_states, axis=1), docs_dict["retrieved_doc_embeds"], transpose_b=True
... ),
... axis=1,
... )
>>> # 3. Forward to generator
>>> outputs = model(
... inputs=None,
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... decoder_input_ids=input_dict["labels"],
... )
>>> # or directly generate
>>> generated = model.generate(
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... )
>>> generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)
```"""
assert (
"decoder_cached_states" not in kwargs
), "Please use past_key_values to cache intermediate outputs" # from modeling_tf_bart.py
do_marginalize = do_marginalize if do_marginalize else self.config.do_marginalize
reduce_loss = reduce_loss if reduce_loss else self.config.reduce_loss
if labels is not None:
if decoder_input_ids is None:
decoder_input_ids = labels
use_cache = False
outputs = self.rag(
input_ids,
attention_mask=attention_mask,
encoder_outputs=encoder_outputs,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
output_retrieved=output_retrieved,
n_docs=n_docs,
training=training,
)
loss = None
logits = outputs.logits
if labels is not None:
assert decoder_input_ids is not None
loss = self.get_nll(
outputs.logits,
outputs.doc_scores,
labels,
reduce_loss=reduce_loss,
epsilon=self.config.label_smoothing,
n_docs=n_docs,
)
if do_marginalize:
logits = self.marginalize(logits, outputs.doc_scores, n_docs)
return TFRetrievAugLMMarginOutput(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
doc_scores=outputs.doc_scores,
context_input_ids=outputs.context_input_ids,
context_attention_mask=outputs.context_attention_mask,
retrieved_doc_embeds=outputs.retrieved_doc_embeds,
retrieved_doc_ids=outputs.retrieved_doc_ids,
question_encoder_last_hidden_state=outputs.question_encoder_last_hidden_state,
question_enc_hidden_states=outputs.question_enc_hidden_states,
question_enc_attentions=outputs.question_enc_attentions,
generator_enc_last_hidden_state=outputs.generator_enc_last_hidden_state,
generator_enc_hidden_states=outputs.generator_enc_hidden_states,
generator_enc_attentions=outputs.generator_enc_attentions,
generator_dec_hidden_states=outputs.generator_dec_hidden_states,
generator_dec_attentions=outputs.generator_dec_attentions,
)
def generate(
self,
input_ids: TFModelInputType | None = None,
attention_mask: tf.Tensor | None = None,
context_input_ids=None,
context_attention_mask=None,
doc_scores=None,
n_docs=None,
generation_config=None,
logits_processor=TFLogitsProcessorList(),
**kwargs,
):
"""
Implements TFRAG token decoding.
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
The sequence used as a prompt for the generation. If `input_ids` is not passed, then
`context_input_ids` has to be provided.
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
context_input_ids (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input IDs post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model has is not initialized with a `retriever`, `context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`].
context_attention_mask (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever.
If the model has is not initialized with a `retriever`, `context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`].
doc_scores (`tf.Tensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`.
If the model has is not initialized with a `retriever`, `context_input_ids` has to be provided to the
forward pass. `context_input_ids` are returned by [`~RagRetriever.__call__`].
n_docs (`int`, *optional*, defaults to `config.n_docs`)
Number of documents to retrieve and/or number of documents for which to generate an answer.
generation_config (`~generation.GenerationConfig`, *optional*):
The generation configuration to be used as base parametrization for the generation call. `**kwargs`
passed to generate matching the attributes of `generation_config` will override them. If
`generation_config` is not provided, the default will be used, which had the following loading
priority: 1) from the `generation_config.json` model file, if it exists; 2) from the model
configuration. Please note that unspecified parameters will inherit [`~generation.GenerationConfig`]'s
default values, whose documentation should be checked to parameterize generation.
logits_processor (`TFLogitsProcessorList`, *optional*):
Custom logits processors that complement the default logits processors built from arguments and a
model's config. If a logit processor is passed that is already created with the arguments or a model's
config an error is thrown.
kwargs (`Dict[str, Any]`, *optional*):
Ad hoc parametrization of `generate_config` and/or additional model-specific kwargs that will be
forwarded to the `forward` function of the model.
Return:
`tf.Tensor` of shape `(batch_size * num_return_sequences, sequence_length)`: The generated sequences. The
second dimension (sequence_length) is either equal to `max_length` or shorter if all batches finished early
due to the `eos_token_id`.
"""
# Handle `generation_config` and kwargs that might update it
if generation_config is None:
generation_config = self.generation_config
generation_config = copy.deepcopy(generation_config)
model_kwargs = generation_config.update(**kwargs) # All unused kwargs must be model kwargs
# set default parameters
n_docs = n_docs if n_docs is not None else self.config.n_docs
# retrieve docs
if self.retriever is not None and context_input_ids is None:
question_hidden_states = self.question_encoder(input_ids, attention_mask=attention_mask)[0]
out = self.retriever(
input_ids,
question_hidden_states.numpy().astype(np.float32),
prefix=self.generator.config.prefix,
n_docs=n_docs,
return_tensors="tf",
)
context_input_ids, context_attention_mask, retrieved_doc_embeds = (
out["context_input_ids"],
out["context_attention_mask"],
out["retrieved_doc_embeds"],
)
context_input_ids = tf.cast(context_input_ids, tf.int32)
context_attention_mask = tf.cast(context_attention_mask, tf.int32)
retrieved_doc_embeds = tf.cast(retrieved_doc_embeds, tf.float32)
# compute doc_scores
doc_scores = tf.matmul(
tf.expand_dims(question_hidden_states, axis=1), retrieved_doc_embeds, transpose_b=True
)
doc_scores = tf.squeeze(doc_scores, axis=1)
assert (context_input_ids.shape[0] % n_docs) == 0, (
f" The first dimension of `context_input_ids` should be a multiple of `n_docs`={n_docs}, but is"
f" {context_input_ids.shape[0]}."
)
batch_size = context_input_ids.shape[0] // n_docs
encoder = self.rag.generator.get_encoder()
encoder_outputs = encoder(
input_ids=context_input_ids,
attention_mask=context_attention_mask,
output_attentions=generation_config.output_attentions,
output_hidden_states=generation_config.output_hidden_states,
return_dict=True,
)
decoder_input_ids = tf.fill(
(batch_size * generation_config.num_beams, 1),
tf.cast(generation_config.decoder_start_token_id, tf.int32),
)
last_hidden_state = encoder_outputs["last_hidden_state"]
def extend_enc_output(tensor, num_beams=None):
"""
Broadcast tensor with `num_beams` replica, with correct order Input: tensor of shape (batch_size*n_docs ,
d) Output: tensor of shape (batch_size*num_beams*n_docs , d)
"""
# expand batch_size & num_beam dimensions
d_shape_list = tensor.shape[1:]
# split n_docs dimensions
new_shape = (batch_size, 1, n_docs) + d_shape_list
tensor = tf.reshape(tensor, new_shape)
# repeat same last hidden states over `num_beams` dimension
new_shape = (batch_size, num_beams, n_docs) + d_shape_list
tensor = tf.broadcast_to(tensor, new_shape)
# merge `batch_size`, `num_beams`, `num_docs` dims again
new_shape = (batch_size * num_beams * n_docs,) + d_shape_list
return tf.reshape(tensor, new_shape)
# correctly extend last_hidden_state and attention mask
context_attention_mask = extend_enc_output(context_attention_mask, num_beams=generation_config.num_beams)
encoder_outputs["last_hidden_state"] = extend_enc_output(
last_hidden_state, num_beams=generation_config.num_beams
)
doc_scores = tf.repeat(doc_scores, generation_config.num_beams, axis=0)
# define start_len & additional parameters
model_kwargs["doc_scores"] = doc_scores
model_kwargs["encoder_outputs"] = encoder_outputs
model_kwargs["attention_mask"] = context_attention_mask
model_kwargs["n_docs"] = n_docs
pre_processor = self._get_logits_processor(
generation_config=generation_config,
input_ids_seq_length=tf.shape(decoder_input_ids)[-1],
logits_processor=logits_processor,
)
if generation_config.num_beams == 1:
return self.greedy_search(
input_ids=decoder_input_ids,
max_length=generation_config.max_length,
pad_token_id=generation_config.pad_token_id,
eos_token_id=generation_config.eos_token_id,
logits_processor=pre_processor,
output_attentions=generation_config.output_attentions,
output_hidden_states=generation_config.output_hidden_states,
output_scores=generation_config.output_scores,
return_dict_in_generate=generation_config.return_dict_in_generate,
**model_kwargs,
)
elif generation_config.num_beams > 1:
if generation_config.num_beams < generation_config.num_return_sequences:
raise ValueError(
"Beam search decoding cannot return more sequences than it has beams. Please set num_beams >="
f" num_return_sequences, got {generation_config.num_beams} and"
f" {generation_config.num_return_sequences} (respectivelly)"
)
def unflatten_beam_dim(tensor):
"""Unflattens the first, flat batch*beam dimension of a non-scalar array."""
shape = shape_list(tensor)
return tf.reshape(tensor, [-1, generation_config.num_beams] + shape[1:])
decoder_input_ids = unflatten_beam_dim(decoder_input_ids)
model_kwargs["attention_mask"] = unflatten_beam_dim(model_kwargs["attention_mask"])
model_kwargs["encoder_outputs"]["last_hidden_state"] = unflatten_beam_dim(
model_kwargs["encoder_outputs"]["last_hidden_state"]
)
return self.beam_search(
input_ids=decoder_input_ids,
max_length=generation_config.max_length,
pad_token_id=generation_config.pad_token_id,
eos_token_id=generation_config.eos_token_id,
logits_processor=pre_processor,
output_attentions=generation_config.output_attentions,
output_hidden_states=generation_config.output_hidden_states,
output_scores=generation_config.output_scores,
return_dict_in_generate=generation_config.return_dict_in_generate,
**model_kwargs,
)
else:
raise ValueError(
f"`num_beams` has to be an integer strictly superior to 0 (≥ 1), but is {generation_config.num_beams}"
)
def get_input_embeddings(self):
return self.rag.generator.get_input_embeddings()
def get_output_embeddings(self):
return self.rag.generator.get_output_embeddings()
# Adapted from tf_t5's & tf_bart's _shift_right
def shift_tokens_right(self, input_ids, start_token_id=None):
"""Shift input ids one token to the right, and pad with start_token_id"""
if start_token_id is None:
start_token_id = self.generator.config.decoder_start_token_id
assert start_token_id is not None, (
"self.generator.config.decoder_start_token_id has to be defined. In Rag we commonly use Bart as"
" generator, see Bart docs for more information"
)
pad_token_id = self.generator.config.pad_token_id
assert pad_token_id is not None, "self.model.config.pad_token_id has to be defined."
start_tokens = tf.fill((shape_list(input_ids)[0], 1), tf.cast(start_token_id, input_ids.dtype))
shifted_input_ids = tf.concat([start_tokens, input_ids[:, :-1]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100,
tf.fill(shape_list(shifted_input_ids), tf.cast(pad_token_id, input_ids.dtype)),
shifted_input_ids,
)
# "Verify that `labels` has only positive values and -100"
assert_gte0 = tf.debugging.assert_greater_equal(shifted_input_ids, tf.cast(0, shifted_input_ids.dtype))
# Make sure the assertion op is called by wrapping the result in an identity no-op
with tf.control_dependencies([assert_gte0]):
shifted_input_ids = tf.identity(shifted_input_ids)
return shifted_input_ids
# nll stands for 'negative log likelihood'
def get_nll(self, seq_logits, doc_scores, target, reduce_loss=False, epsilon=0.0, n_docs=None):
n_docs = n_docs if n_docs is not None else self.config.n_docs
# shift tokens left (from original Pytorch's version)
target = tf.concat(
[target[:, 1:], tf.fill([target.shape[0], 1], tf.cast(self.config.generator.pad_token_id, target.dtype))],
axis=1,
)
rag_logprobs = self.marginalize(seq_logits, doc_scores, n_docs)
loss = self.hf_compute_loss(target, rag_logprobs, from_logits=True, reduce_loss=reduce_loss)
return loss
# Adopted modeling_tf_bart + add smooth_loss to match with pytorch version
def hf_compute_loss(self, labels, y_pred, smooth_epsilon=0.0, from_logits=True, reduce_loss=False):
"""CrossEntropyLoss that ignores pad tokens"""
# Matt: As written, this loss is not XLA-compatible, but it's doing some very weird things
# and I don't feel comfortable converting it.
loss_fn = tf.keras.losses.SparseCategoricalCrossentropy(
from_logits=True,
reduction=tf.keras.losses.Reduction.SUM,
)
if from_logits is False: # convert to logits
eps = 1e-9
y_pred = tf.clip_by_value(y_pred, clip_value_min=eps, clip_value_max=1 - eps)
y_pred = tf.math.log(y_pred)
logits = y_pred
melted_labels = tf.reshape(labels, (-1,))
active_loss = tf.not_equal(melted_labels, self.config.generator.pad_token_id)
reduced_logits = tf.boolean_mask(tf.reshape(logits, (-1, logits.shape[2])), active_loss)
labels = tf.boolean_mask(melted_labels, active_loss)
nll_loss = loss_fn(labels, reduced_logits)
smooth_loss = -tf.reduce_sum(reduced_logits, axis=-1)
smooth_loss = tf.reduce_sum(smooth_loss) # sum and squeeze like torch
eps_i = smooth_epsilon / reduced_logits.shape[-1]
loss = (1.0 - smooth_epsilon) * nll_loss + eps_i * smooth_loss
return loss
@add_start_docstrings_to_model_forward(
"""
A TF RAG-sequence model implementation. It performs RAG-sequence specific marginalization in the forward pass.
""",
RAG_START_DOCSTRING,
)
class TFRagSequenceForGeneration(TFRagPreTrainedModel, TFCausalLanguageModelingLoss):
load_weight_prefix = "tf_rag_sequence_for_generation_1/rag"
def __init__(
self,
config: Optional[PretrainedConfig] = None,
question_encoder: Optional[TFPreTrainedModel] = None,
generator: Optional[TFPreTrainedModel] = None,
retriever: Optional[RagRetriever] = None,
**kwargs,
):
assert config is not None or (
question_encoder is not None and generator is not None
), "Either a configuration or an encoder and a generator has to be provided."
if config is None:
config = RagConfig.from_question_encoder_generator_configs(
question_encoder.config, generator.config, **kwargs
)
super().__init__(config)
# instantiate model
self.rag = TFRagModel(
config=config,
question_encoder=question_encoder,
generator=generator,
retriever=retriever,
load_weight_prefix=self.load_weight_prefix,
name="rag",
)
def set_retriever(self, retriever: RagRetriever):
self.rag.retriever = retriever
@property
def retriever(self):
return self.rag.retriever
@property
def generator(self):
return self.rag.generator
@property
def question_encoder(self):
return self.rag.question_encoder
@unpack_inputs
@add_start_docstrings_to_model_forward(RAG_FORWARD_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFRetrievAugLMMarginOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
decoder_input_ids: np.ndarray | tf.Tensor | None = None,
decoder_attention_mask: np.ndarray | tf.Tensor | None = None,
encoder_outputs: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
doc_scores: np.ndarray | tf.Tensor | None = None,
context_input_ids: np.ndarray | tf.Tensor | None = None,
context_attention_mask: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
output_retrieved: Optional[bool] = None,
n_docs: Optional[int] = None,
exclude_bos_score: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
reduce_loss: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
**kwargs, # needs kwargs for generation
) -> Union[Tuple[tf.Tensor], TFRetrievAugLMMarginOutput]:
r"""
exclude_bos_score (`bool`, *optional*):
Only relevant if `labels` is passed. If `True`, the score of the BOS token is disregarded when computing
the loss.
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss according to Rag-Sequence model formulation See
https://arxiv.org/pdf/2005.11401.pdf Section 2.1 for details about Rag-Sequence formulation. Indices should
be in `[0, ..., config.vocab_size - 1]`.
reduce_loss (`bool`, *optional*):
Only relevant if `labels` is passed. If `True`, the NLL loss is reduced using the `tf.Tensor.sum`
operation.
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Legacy dictionary, which is required so that model can use *generate()* function.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, RagRetriever, TFRagSequenceForGeneration
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/rag-sequence-nq")
>>> retriever = RagRetriever.from_pretrained(
... "facebook/rag-sequence-nq", index_name="exact", use_dummy_dataset=True
... )
>>> # initialize with RagRetriever to do everything in one forward call
>>> model = TFRagSequenceForGeneration.from_pretrained(
... "facebook/rag-sequence-nq", retriever=retriever, from_pt=True
... )
>>> input_dict = tokenizer.prepare_seq2seq_batch(
... "How many people live in Paris?", "In Paris, there are 10 million people.", return_tensors="tf"
... )
>>> outputs = model(input_dict, output_retrieved=True)
>>> # or use retriever separately
>>> # 1. Encode
>>> input_ids = input_dict["input_ids"]
>>> question_hidden_states = model.question_encoder(input_ids)[0]
>>> # 2. Retrieve
>>> docs_dict = retriever(input_ids.numpy(), question_hidden_states.numpy(), return_tensors="tf")
>>> doc_scores = tf.squeeze(
... tf.matmul(
... tf.expand_dims(question_hidden_states, axis=1), docs_dict["retrieved_doc_embeds"], transpose_b=True
... ),
... axis=1,
... )
>>> # 3. Forward to generator
>>> outputs = model(
... inputs=None,
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... decoder_input_ids=input_dict["labels"],
... )
>>> # or directly generate
>>> generated = model.generate(
... context_input_ids=docs_dict["context_input_ids"],
... context_attention_mask=docs_dict["context_attention_mask"],
... doc_scores=doc_scores,
... )
>>> generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)
```"""
assert (
"decoder_cached_states" not in kwargs
), "Please use past_key_values to cache intermediate outputs" # from modeling_tf_bart.py
exclude_bos_score = exclude_bos_score if exclude_bos_score else self.config.exclude_bos_score
reduce_loss = reduce_loss if reduce_loss else self.config.reduce_loss
if labels is not None:
if decoder_input_ids is None:
decoder_input_ids = labels
use_cache = False
outputs = self.rag(
input_ids,
attention_mask=attention_mask,
encoder_outputs=encoder_outputs,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
context_input_ids=context_input_ids,
context_attention_mask=context_attention_mask,
doc_scores=doc_scores,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
output_retrieved=output_retrieved,
n_docs=n_docs,
training=training,
)
loss = None
if labels is not None:
loss = self.get_nll(
outputs.logits,
outputs.doc_scores,
labels,
reduce_loss=reduce_loss,
epsilon=self.config.label_smoothing,
n_docs=n_docs,
)
return TFRetrievAugLMMarginOutput(
loss=loss,
logits=outputs.logits,
doc_scores=outputs.doc_scores,
past_key_values=outputs.past_key_values,
context_input_ids=outputs.context_input_ids,
context_attention_mask=outputs.context_attention_mask,
retrieved_doc_embeds=outputs.retrieved_doc_embeds,
retrieved_doc_ids=outputs.retrieved_doc_ids,
question_encoder_last_hidden_state=outputs.question_encoder_last_hidden_state,
question_enc_hidden_states=outputs.question_enc_hidden_states,
question_enc_attentions=outputs.question_enc_attentions,
generator_enc_last_hidden_state=outputs.generator_enc_last_hidden_state,
generator_enc_hidden_states=outputs.generator_enc_hidden_states,
generator_enc_attentions=outputs.generator_enc_attentions,
generator_dec_hidden_states=outputs.generator_dec_hidden_states,
generator_dec_attentions=outputs.generator_dec_attentions,
)
def get_nll(
self, seq_logits, doc_scores, target, reduce_loss=False, epsilon=0.0, exclude_bos_score=False, n_docs=None
):
# shift tokens left
target = tf.concat(
[target[:, 1:], tf.fill([target.shape[0], 1], tf.cast(self.config.generator.pad_token_id, target.dtype))],
axis=1,
)
# bos_token_id is None for T5
bos_token_id = self.config.bos_token_id or self.config.generator.bos_token_id
n_docs = n_docs if n_docs is not None else self.config.n_docs
equal_bos_token_id_all = tf.reduce_all(tf.equal(target[:, 0], bos_token_id))
use_bos = bos_token_id is not None and equal_bos_token_id_all
def _mask_pads(ll, smooth_obj):
pad_mask = tf.equal(target, tf.cast(self.config.generator.pad_token_id, target.dtype))
if tf.reduce_any(pad_mask):
ll = tf.where(pad_mask, 0.0, ll)
smooth_obj = tf.where(pad_mask, 0.0, smooth_obj)
return tf.squeeze(ll, axis=-1), tf.squeeze(smooth_obj, axis=-1)
# seq_logits.shape = (batch*n_docs, tgt_len , vocabs)
seq_logprobs = tf.nn.log_softmax(seq_logits, axis=-1)
seq_logprobs = tf.reshape(
seq_logprobs, (seq_logits.shape[0] // n_docs, n_docs, -1, seq_logits.shape[-1])
) # (batch_size, n_docs, tgt_len, vocabs)
doc_logprobs = tf.nn.log_softmax(doc_scores, axis=1)
doc_logprobs = tf.expand_dims(doc_logprobs, axis=-1)
doc_logprobs = tf.expand_dims(doc_logprobs, axis=-1) # done twice to get 4-D
# RAG-sequence marginalization
first_token_scores = seq_logprobs[:, :, :1, :]
second_token_scores = seq_logprobs[:, :, 1:2, :]
remainder = seq_logprobs[:, :, 2:, :]
rag_logprobs = tf.concat([first_token_scores, second_token_scores + doc_logprobs, remainder], axis=2)
# calculate loss
target = tf.expand_dims(target, axis=1) # n_docs dimension
target = tf.expand_dims(target, axis=-1) # logits dimension
target = tf.repeat(target, n_docs, axis=1)
assert len(target.shape) == len(rag_logprobs.shape)
# last-axis gathering only - use 2D-reshape-trick for Torch's style nD gathering
def torch_gather(param, id_tensor):
# 2d-gather torch equivalent: https://stackoverflow.com/questions/52129909/tensorflow-equivalent-of-torch-gather
def gather2d(target, id_tensor):
idx = tf.stack([tf.range(tf.shape(id_tensor)[0], dtype=id_tensor.dtype), id_tensor[:, 0]], axis=-1)
result = tf.gather_nd(target, idx)
return tf.expand_dims(result, axis=-1)
target = tf.reshape(param, (-1, param.shape[-1])) # reshape 2D
target_shape = id_tensor.shape
id_tensor = tf.reshape(id_tensor, (-1, 1)) # also 2D-index
result = gather2d(target, id_tensor)
return tf.reshape(result, target_shape)
ll = torch_gather(rag_logprobs, id_tensor=target)
smooth_obj = tf.reduce_sum(rag_logprobs, axis=-1, keepdims=True) # total sum of all (normalised) logits
ll, smooth_obj = _mask_pads(ll, smooth_obj)
# sum over tokens, exclude bos while scoring
if exclude_bos_score and use_bos:
ll = tf.reduce_sum(ll[:, :, 1:], axis=2)
else:
ll = tf.reduce_sum(ll, axis=2)
smooth_obj = tf.reduce_sum(smooth_obj, axis=2)
ll = tf.math.reduce_logsumexp(ll, axis=1) # logsumexp over docs
smooth_obj = tf.math.reduce_logsumexp(smooth_obj, axis=1)
nll_loss = -ll
smooth_loss = -smooth_obj
if reduce_loss:
nll_loss = tf.reduce_sum(nll_loss)
smooth_loss = tf.reduce_sum(smooth_loss)
eps_i = epsilon / rag_logprobs.shape[-1]
loss = (1.0 - epsilon) * nll_loss + eps_i * smooth_loss
return loss
def generate(
self,
input_ids: TFModelInputType | None = None,
attention_mask: tf.Tensor | None = None,
context_input_ids=None,
context_attention_mask=None,
doc_scores=None,
do_deduplication=None, # defaults to True
num_return_sequences=None, # defaults to 1
num_beams=None, # defaults to 1
n_docs=None,
**model_kwargs,
):
"""
Implements RAG sequence "thorough" decoding. Read the [`~generation.GenerationMixin.generate`]` documentation
for more information on how to set other generate input parameters
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
The sequence used as a prompt for the generation. If `input_ids` is not passed, then
`context_input_ids` has to be provided.
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`: - 1 for
tokens that are **not masked**, - 0 for tokens that are **masked**. [What are attention
masks?](../glossary#attention-mask)
context_input_ids (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Input IDs post-processed from the retrieved documents and the question encoder input_ids by the
retriever.
context_attention_mask (`tf.Tensor` of shape `(batch_size * config.n_docs, config.max_combined_length)`, *optional*, returned when *output_retrieved=True*):
Attention mask post-processed from the retrieved documents and the question encoder `input_ids` by the
retriever. If the model has is not initialized with a `retriever` or `input_ids` is not given,
`context_input_ids` and `context_attention_mask` have to be provided to the forward pass. They are
returned by [`~RagRetriever.__call__`].
doc_scores (`tf.Tensor` of shape `(batch_size, config.n_docs)`):
Score between each retrieved document embeddings (see `retrieved_doc_embeds`) and
`question_encoder_last_hidden_state`. If the model has is not initialized with a `retriever` or
`input_ids` is not given, `doc_scores` has to be provided to the forward pass. `doc_scores` are
returned by [`~RagRetriever.__call__`].
do_deduplication (`bool`, *optional*):
Whether or not to deduplicate the generations from different context documents for a given input. Has
to be set to `False` if used while training with distributed backend.
num_return_sequences(`int`, *optional*, defaults to 1):
The number of independently computed returned sequences for each element in the batch. Note that this
is not the value we pass to the `generator`'s `[`~generation.GenerationMixin.generate`]` function,
where we set `num_return_sequences` to `num_beams`.
num_beams (`int`, *optional*, defaults to 1):
Number of beams for beam search. 1 means no beam search.
n_docs (`int`, *optional*, defaults to `config.n_docs`)
Number of documents to retrieve and/or number of documents for which to generate an answer.
kwargs (`Dict[str, Any]`, *optional*):
Additional kwargs will be passed to [`~generation.GenerationMixin.generate`]
Return:
`tf.Tensor` of shape `(batch_size * num_return_sequences, sequence_length)`: The generated sequences. The
second dimension (sequence length) is either equal to `max_length` or shorter if all batches finished early
due to the `eos_token_id`.
"""
n_docs = n_docs if n_docs is not None else self.config.n_docs
do_deduplication = do_deduplication if do_deduplication is not None else self.config.do_deduplication
num_doc_return_sequences = (
num_return_sequences if num_return_sequences is not None else self.config.num_return_sequences
)
num_beams = num_beams if num_beams is not None else self.config.num_beams
assert (
input_ids is not None or context_input_ids is not None
), " At least one of input_ids or context_input_ids must be given"
if self.retriever is not None and context_input_ids is None:
question_hidden_states = self.question_encoder(input_ids, attention_mask=attention_mask)[0]
context_input_ids = self.retriever(
input_ids,
question_hidden_states.numpy(),
prefix=self.generator.config.prefix,
n_docs=n_docs,
return_tensors="tf",
)["context_input_ids"]
hypos = []
model_kwargs["num_beams"] = num_beams
model_kwargs["num_return_sequences"] = num_beams # put here so that not confused with num_doc_return_sequences
model_kwargs["attention_mask"] = None
batch_size = input_ids.shape[0] if input_ids is not None else context_input_ids.shape[0] // n_docs
for index in range(batch_size):
# first, generate beams from documents:
generator_input_ids = context_input_ids[index * n_docs : (index + 1) * n_docs] # (n_docs, max_len)
output_sequences = self.generator.generate(
generator_input_ids,
**model_kwargs,
) # n_docs * n_beam, tgt_len
if do_deduplication:
# do_deduplication -- for TF, work on Eager mode only!
output_sequences = tf.stack(list({str(k.numpy().tolist()): k for k in output_sequences}.values()))
num_candidates = output_sequences.shape[
0
] # after deduplication, this number can be less than n_docs*n_beam
# then, run model forwards to get nll scores:
if input_ids is not None:
new_input_ids = tf.tile(input_ids[index : index + 1], (num_candidates, 1))
outputs = self(new_input_ids, labels=output_sequences, exclude_bos_score=True)
else: # input_ids is None, need context_input_ids/mask and doc_scores
assert context_attention_mask is not None, (
"Make sure that `context_attention_mask` are passed, if no `input_ids` is set. Alternatively, you"
" can set a retriever using the `set_retriever(...)` function."
)
assert doc_scores is not None, (
"Make sure that `doc_scores` are passed, if no `input_ids` is set. Alternatively, you can set a"
" retriever using the `set_retriever(...)` function."
)
individual_input_ids = tf.tile(
generator_input_ids, (num_candidates, 1)
) # (num_candidates*n_docs, max_len)
individual_attention_mask = context_attention_mask[index * n_docs : (index + 1) * n_docs]
individual_attention_mask = tf.tile(individual_attention_mask, (num_candidates, 1))
individual_doc_scores = doc_scores[index : (index + 1), :] # doc_scores.shape = [batch, n_docs]
individual_doc_scores = tf.tile(individual_doc_scores, (num_candidates, 1)) # [num_candidates, n_docs]
outputs = self(
input_ids=None,
context_input_ids=individual_input_ids,
context_attention_mask=individual_attention_mask,
doc_scores=individual_doc_scores,
labels=output_sequences,
exclude_bos_score=True,
)
top_cand_inds = tf.math.top_k((-outputs["loss"]), k=num_doc_return_sequences)[1]
# add hypothesis
hypos.append(tf.gather(output_sequences, top_cand_inds))
return self._cat_and_pad(hypos, pad_token_id=self.config.generator.pad_token_id)
@staticmethod
def _cat_and_pad(tensors, pad_token_id):
# used by generate(): tensors is a (batched) list of (candidates, len); len is varied across batch
# Initialize padded tensor with shape ( all_candidates , max_candidate_length ),
# where all_candidates counted from all inputs
new_shape = sum([t.shape[0] for t in tensors]), max([t.shape[1] for t in tensors])
output = tf.fill(new_shape, pad_token_id)
# Normal tensor doesn't support slice assignment, so we need tf.Variable
output = tf.Variable(output)
# Assign, and then convert back to tensor
ind = 0
for t in tensors:
output[ind : ind + t.shape[0], : t.shape[1]].assign(t)
ind += t.shape[0]
output = tf.convert_to_tensor(output)
return tf.cast(output, tensors[0][0][0].dtype)
| 87,919 | 49.383954 | 172 | py |
transformers | transformers-main/src/transformers/models/rag/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_rag": ["RagConfig"],
"retrieval_rag": ["RagRetriever"],
"tokenization_rag": ["RagTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_rag"] = [
"RagModel",
"RagPreTrainedModel",
"RagSequenceForGeneration",
"RagTokenForGeneration",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_rag"] = [
"TFRagModel",
"TFRagPreTrainedModel",
"TFRagSequenceForGeneration",
"TFRagTokenForGeneration",
]
if TYPE_CHECKING:
from .configuration_rag import RagConfig
from .retrieval_rag import RagRetriever
from .tokenization_rag import RagTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_rag import RagModel, RagPreTrainedModel, RagSequenceForGeneration, RagTokenForGeneration
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_rag import (
TFRagModel,
TFRagPreTrainedModel,
TFRagSequenceForGeneration,
TFRagTokenForGeneration,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 2,426 | 28.240964 | 113 | py |
transformers | transformers-main/src/transformers/models/rag/configuration_rag.py | # coding=utf-8
# Copyright 2020, The RAG Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" RAG model configuration"""
import copy
from ...configuration_utils import PretrainedConfig
from ...utils import add_start_docstrings
RAG_CONFIG_DOC = r"""
[`RagConfig`] stores the configuration of a *RagModel*. Configuration objects inherit from [`PretrainedConfig`] and
can be used to control the model outputs. Read the documentation from [`PretrainedConfig`] for more information.
Args:
title_sep (`str`, *optional*, defaults to `" / "`):
Separator inserted between the title and the text of the retrieved document when calling [`RagRetriever`].
doc_sep (`str`, *optional*, defaults to `" // "`):
Separator inserted between the text of the retrieved document and the original input when calling
[`RagRetriever`].
n_docs (`int`, *optional*, defaults to 5):
Number of documents to retrieve.
max_combined_length (`int`, *optional*, defaults to 300):
Max length of contextualized input returned by [`~RagRetriever.__call__`].
retrieval_vector_size (`int`, *optional*, defaults to 768):
Dimensionality of the document embeddings indexed by [`RagRetriever`].
retrieval_batch_size (`int`, *optional*, defaults to 8):
Retrieval batch size, defined as the number of queries issues concurrently to the faiss index encapsulated
[`RagRetriever`].
dataset (`str`, *optional*, defaults to `"wiki_dpr"`):
A dataset identifier of the indexed dataset in HuggingFace Datasets (list all available datasets and ids
using `datasets.list_datasets()`).
dataset_split (`str`, *optional*, defaults to `"train"`)
Which split of the `dataset` to load.
index_name (`str`, *optional*, defaults to `"compressed"`)
The index name of the index associated with the `dataset`. One can choose between `"legacy"`, `"exact"` and
`"compressed"`.
index_path (`str`, *optional*)
The path to the serialized faiss index on disk.
passages_path (`str`, *optional*):
A path to text passages compatible with the faiss index. Required if using
[`~models.rag.retrieval_rag.LegacyIndex`]
use_dummy_dataset (`bool`, *optional*, defaults to `False`)
Whether to load a "dummy" variant of the dataset specified by `dataset`.
label_smoothing (`float`, *optional*, defaults to 0.0):
Only relevant if `return_loss` is set to `True`. Controls the `epsilon` parameter value for label smoothing
in the loss calculation. If set to 0, no label smoothing is performed.
do_marginalize (`bool`, *optional*, defaults to `False`):
If `True`, the logits are marginalized over all documents by making use of
`torch.nn.functional.log_softmax`.
reduce_loss (`bool`, *optional*, defaults to `False`):
Whether or not to reduce the NLL loss using the `torch.Tensor.sum` operation.
do_deduplication (`bool`, *optional*, defaults to `True`):
Whether or not to deduplicate the generations from different context documents for a given input. Has to be
set to `False` if used while training with distributed backend.
exclude_bos_score (`bool`, *optional*, defaults to `False`):
Whether or not to disregard the BOS token when computing the loss.
output_retrieved(`bool`, *optional*, defaults to `False`):
If set to `True`, `retrieved_doc_embeds`, `retrieved_doc_ids`, `context_input_ids` and
`context_attention_mask` are returned. See returned tensors for more detail.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
forced_eos_token_id (`int`, *optional*):
The id of the token to force as the last generated token when `max_length` is reached. Usually set to
`eos_token_id`.
"""
@add_start_docstrings(RAG_CONFIG_DOC)
class RagConfig(PretrainedConfig):
model_type = "rag"
is_composition = True
def __init__(
self,
vocab_size=None,
is_encoder_decoder=True,
prefix=None,
bos_token_id=None,
pad_token_id=None,
eos_token_id=None,
decoder_start_token_id=None,
title_sep=" / ",
doc_sep=" // ",
n_docs=5,
max_combined_length=300,
retrieval_vector_size=768,
retrieval_batch_size=8,
dataset="wiki_dpr",
dataset_split="train",
index_name="compressed",
index_path=None,
passages_path=None,
use_dummy_dataset=False,
reduce_loss=False,
label_smoothing=0.0,
do_deduplication=True,
exclude_bos_score=False,
do_marginalize=False,
output_retrieved=False,
use_cache=True,
forced_eos_token_id=None,
**kwargs,
):
super().__init__(
bos_token_id=bos_token_id,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
decoder_start_token_id=decoder_start_token_id,
forced_eos_token_id=forced_eos_token_id,
is_encoder_decoder=is_encoder_decoder,
prefix=prefix,
vocab_size=vocab_size,
**kwargs,
)
assert (
"question_encoder" in kwargs and "generator" in kwargs
), "Config has to be initialized with question_encoder and generator config"
question_encoder_config = kwargs.pop("question_encoder")
question_encoder_model_type = question_encoder_config.pop("model_type")
decoder_config = kwargs.pop("generator")
decoder_model_type = decoder_config.pop("model_type")
from ..auto.configuration_auto import AutoConfig
self.question_encoder = AutoConfig.for_model(question_encoder_model_type, **question_encoder_config)
self.generator = AutoConfig.for_model(decoder_model_type, **decoder_config)
self.reduce_loss = reduce_loss
self.label_smoothing = label_smoothing
self.exclude_bos_score = exclude_bos_score
self.do_marginalize = do_marginalize
self.title_sep = title_sep
self.doc_sep = doc_sep
self.n_docs = n_docs
self.max_combined_length = max_combined_length
self.dataset = dataset
self.dataset_split = dataset_split
self.index_name = index_name
self.retrieval_vector_size = retrieval_vector_size
self.retrieval_batch_size = retrieval_batch_size
self.passages_path = passages_path
self.index_path = index_path
self.use_dummy_dataset = use_dummy_dataset
self.output_retrieved = output_retrieved
self.do_deduplication = do_deduplication
self.use_cache = use_cache
if self.forced_eos_token_id is None:
self.forced_eos_token_id = getattr(self.generator, "forced_eos_token_id", None)
@classmethod
def from_question_encoder_generator_configs(
cls, question_encoder_config: PretrainedConfig, generator_config: PretrainedConfig, **kwargs
) -> PretrainedConfig:
r"""
Instantiate a [`EncoderDecoderConfig`] (or a derived class) from a pre-trained encoder model configuration and
decoder model configuration.
Returns:
[`EncoderDecoderConfig`]: An instance of a configuration object
"""
return cls(question_encoder=question_encoder_config.to_dict(), generator=generator_config.to_dict(), **kwargs)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
output["question_encoder"] = self.question_encoder.to_dict()
output["generator"] = self.generator.to_dict()
output["model_type"] = self.__class__.model_type
return output
| 8,800 | 44.133333 | 119 | py |
transformers | transformers-main/src/transformers/models/efficientformer/modeling_efficientformer.py | # coding=utf-8
# Copyright 2022 Snapchat Research and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch EfficientFormer model."""
import itertools
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling, ImageClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
)
from .configuration_efficientformer import EfficientFormerConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "EfficientFormerConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "snap-research/efficientformer-l1-300"
_EXPECTED_OUTPUT_SHAPE = [1, 49, 448]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "snap-research/efficientformer-l1-300"
_IMAGE_CLASS_EXPECTED_OUTPUT = "Egyptian cat"
EFFICIENTFORMER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"snap-research/efficientformer-l1-300",
# See all EfficientFormer models at https://huggingface.co/models?filter=efficientformer
]
class EfficientFormerPatchEmbeddings(nn.Module):
"""
This class performs downsampling between two stages. For the input tensor with the shape [batch_size, num_channels,
height, width] it produces output tensor with the shape [batch_size, num_channels, height/stride, width/stride]
"""
def __init__(self, config: EfficientFormerConfig, num_channels: int, embed_dim: int, apply_norm: bool = True):
super().__init__()
self.num_channels = num_channels
self.projection = nn.Conv2d(
num_channels,
embed_dim,
kernel_size=config.downsample_patch_size,
stride=config.downsample_stride,
padding=config.downsample_pad,
)
self.norm = nn.BatchNorm2d(embed_dim, eps=config.batch_norm_eps) if apply_norm else nn.Identity()
def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
embeddings = self.projection(pixel_values)
embeddings = self.norm(embeddings)
return embeddings
class EfficientFormerSelfAttention(nn.Module):
def __init__(self, dim: int, key_dim: int, num_heads: int, attention_ratio: int, resolution: int):
super().__init__()
self.num_heads = num_heads
self.key_dim = key_dim
self.attention_ratio = attention_ratio
self.scale = key_dim**-0.5
self.total_key_dim = key_dim * num_heads
self.expanded_key_dim = int(attention_ratio * key_dim)
self.total_expanded_key_dim = int(self.expanded_key_dim * num_heads)
hidden_size = self.total_expanded_key_dim + self.total_key_dim * 2
self.qkv = nn.Linear(dim, hidden_size)
self.projection = nn.Linear(self.total_expanded_key_dim, dim)
points = list(itertools.product(range(resolution), range(resolution)))
num_points = len(points)
attention_offsets = {}
idxs = []
for point_1 in points:
for point_2 in points:
offset = (abs(point_1[0] - point_2[0]), abs(point_1[1] - point_2[1]))
if offset not in attention_offsets:
attention_offsets[offset] = len(attention_offsets)
idxs.append(attention_offsets[offset])
self.attention_biases = torch.nn.Parameter(torch.zeros(num_heads, len(attention_offsets)))
self.register_buffer("attention_bias_idxs", torch.LongTensor(idxs).view(num_points, num_points))
@torch.no_grad()
def train(self, mode=True):
super().train(mode)
if mode and hasattr(self, "ab"):
del self.ab
else:
self.ab = self.attention_biases[:, self.attention_bias_idxs]
def forward(self, hidden_states: torch.Tensor, output_attentions: bool = False) -> Tuple[torch.Tensor]:
batch_size, sequence_length, num_channels = hidden_states.shape
qkv = self.qkv(hidden_states)
query_layer, key_layer, value_layer = qkv.reshape(batch_size, sequence_length, self.num_heads, -1).split(
[self.key_dim, self.key_dim, self.expanded_key_dim], dim=3
)
query_layer = query_layer.permute(0, 2, 1, 3)
key_layer = key_layer.permute(0, 2, 1, 3)
value_layer = value_layer.permute(0, 2, 1, 3)
# set `model.to(torch_device)` won't change `self.ab.device`, if there is no follow-up `train` or `eval` call.
# Let's do it manually here, so users won't have to do this everytime.
if not self.training:
self.ab = self.ab.to(self.attention_biases.device)
attention_probs = (torch.matmul(query_layer, key_layer.transpose(-2, -1))) * self.scale + (
self.attention_biases[:, self.attention_bias_idxs] if self.training else self.ab
)
attention_probs = attention_probs.softmax(dim=-1)
context_layer = torch.matmul(attention_probs, value_layer).transpose(1, 2)
context_layer = context_layer.reshape(batch_size, sequence_length, self.total_expanded_key_dim)
context_layer = self.projection(context_layer)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
class EfficientFormerConvStem(nn.Module):
def __init__(self, config: EfficientFormerConfig, out_channels: int):
super().__init__()
self.convolution1 = nn.Conv2d(config.num_channels, out_channels // 2, kernel_size=3, stride=2, padding=1)
self.batchnorm_before = nn.BatchNorm2d(out_channels // 2, eps=config.batch_norm_eps)
self.convolution2 = nn.Conv2d(out_channels // 2, out_channels, kernel_size=3, stride=2, padding=1)
self.batchnorm_after = nn.BatchNorm2d(out_channels, eps=config.batch_norm_eps)
self.activation = nn.ReLU()
def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
features = self.batchnorm_before(self.convolution1(pixel_values))
features = self.activation(features)
features = self.batchnorm_after(self.convolution2(features))
features = self.activation(features)
return features
class EfficientFormerPooling(nn.Module):
def __init__(self, pool_size: int):
super().__init__()
self.pool = nn.AvgPool2d(pool_size, stride=1, padding=pool_size // 2, count_include_pad=False)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
output = self.pool(hidden_states) - hidden_states
return output
class EfficientFormerDenseMlp(nn.Module):
def __init__(
self,
config: EfficientFormerConfig,
in_features: int,
hidden_features: Optional[int] = None,
out_features: Optional[int] = None,
):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.linear_in = nn.Linear(in_features, hidden_features)
self.activation = ACT2FN[config.hidden_act]
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.linear_out = nn.Linear(hidden_features, out_features)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.linear_in(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.linear_out(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
class EfficientFormerConvMlp(nn.Module):
def __init__(
self,
config: EfficientFormerConfig,
in_features: int,
hidden_features: Optional[int] = None,
out_features: Optional[int] = None,
drop: float = 0.0,
):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.convolution1 = nn.Conv2d(in_features, hidden_features, 1)
self.activation = ACT2FN[config.hidden_act]
self.convolution2 = nn.Conv2d(hidden_features, out_features, 1)
self.dropout = nn.Dropout(drop)
self.batchnorm_before = nn.BatchNorm2d(hidden_features, eps=config.batch_norm_eps)
self.batchnorm_after = nn.BatchNorm2d(out_features, eps=config.batch_norm_eps)
def forward(self, hidden_state: torch.Tensor) -> torch.Tensor:
hidden_state = self.convolution1(hidden_state)
hidden_state = self.batchnorm_before(hidden_state)
hidden_state = self.activation(hidden_state)
hidden_state = self.dropout(hidden_state)
hidden_state = self.convolution2(hidden_state)
hidden_state = self.batchnorm_after(hidden_state)
hidden_state = self.dropout(hidden_state)
return hidden_state
# Copied from transformers.models.convnext.modeling_convnext.drop_path
def drop_path(input, drop_prob: float = 0.0, training: bool = False):
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output
# Copied from transformers.models.beit.modeling_beit.BeitDropPath with Beit->EfficientFormer
class EfficientFormerDropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""
def __init__(self, drop_prob: Optional[float] = None) -> None:
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
return drop_path(hidden_states, self.drop_prob, self.training)
def extra_repr(self) -> str:
return "p={}".format(self.drop_prob)
class EfficientFormerFlat(nn.Module):
def __init__(self):
super().__init__()
def forward(self, hidden_states: torch.Tensor) -> Tuple[torch.Tensor]:
hidden_states = hidden_states.flatten(2).transpose(1, 2)
return hidden_states
class EfficientFormerMeta3D(nn.Module):
def __init__(self, config: EfficientFormerConfig, dim: int, drop_path: float = 0.0):
super().__init__()
self.token_mixer = EfficientFormerSelfAttention(
dim=config.dim,
key_dim=config.key_dim,
num_heads=config.num_attention_heads,
attention_ratio=config.attention_ratio,
resolution=config.resolution,
)
self.layernorm1 = nn.LayerNorm(dim, eps=config.layer_norm_eps)
self.layernorm2 = nn.LayerNorm(dim, eps=config.layer_norm_eps)
mlp_hidden_dim = int(dim * config.mlp_expansion_ratio)
self.mlp = EfficientFormerDenseMlp(config, in_features=dim, hidden_features=mlp_hidden_dim)
self.drop_path = EfficientFormerDropPath(drop_path) if drop_path > 0.0 else nn.Identity()
self.use_layer_scale = config.use_layer_scale
if config.use_layer_scale:
self.layer_scale_1 = nn.Parameter(config.layer_scale_init_value * torch.ones((dim)), requires_grad=True)
self.layer_scale_2 = nn.Parameter(config.layer_scale_init_value * torch.ones((dim)), requires_grad=True)
def forward(self, hidden_states: torch.Tensor, output_attentions: bool = False) -> Tuple[torch.Tensor]:
self_attention_outputs = self.token_mixer(self.layernorm1(hidden_states), output_attentions)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
if self.use_layer_scale:
layer_output = hidden_states + self.drop_path(
self.layer_scale_1.unsqueeze(0).unsqueeze(0) * attention_output
)
layer_output = layer_output + self.drop_path(
self.layer_scale_2.unsqueeze(0).unsqueeze(0) * self.mlp(self.layernorm2(layer_output))
)
else:
layer_output = hidden_states + self.drop_path(attention_output)
layer_output = layer_output + self.drop_path(self.mlp(self.layernorm2(layer_output)))
outputs = (layer_output,) + outputs
return outputs
class EfficientFormerMeta3DLayers(nn.Module):
def __init__(self, config: EfficientFormerConfig):
super().__init__()
drop_paths = [
config.drop_path_rate * (block_idx + sum(config.depths[:-1]))
for block_idx in range(config.num_meta3d_blocks)
]
self.blocks = nn.ModuleList(
[EfficientFormerMeta3D(config, config.hidden_sizes[-1], drop_path=drop_path) for drop_path in drop_paths]
)
def forward(self, hidden_states: torch.Tensor, output_attentions: bool = False) -> Tuple[torch.Tensor]:
all_attention_outputs = () if output_attentions else None
for layer_module in self.blocks:
if isinstance(hidden_states, tuple):
hidden_states = hidden_states[0]
hidden_states = layer_module(hidden_states, output_attentions)
if output_attentions:
all_attention_outputs = all_attention_outputs + (hidden_states[1],)
if output_attentions:
outputs = (hidden_states[0],) + all_attention_outputs
return outputs
return hidden_states
class EfficientFormerMeta4D(nn.Module):
def __init__(self, config: EfficientFormerConfig, dim: int, drop_path: float = 0.0):
super().__init__()
pool_size = config.pool_size if config.pool_size is not None else 3
self.token_mixer = EfficientFormerPooling(pool_size=pool_size)
mlp_hidden_dim = int(dim * config.mlp_expansion_ratio)
self.mlp = EfficientFormerConvMlp(
config, in_features=dim, hidden_features=mlp_hidden_dim, drop=config.hidden_dropout_prob
)
self.drop_path = EfficientFormerDropPath(drop_path) if drop_path > 0.0 else nn.Identity()
self.use_layer_scale = config.use_layer_scale
if config.use_layer_scale:
self.layer_scale_1 = nn.Parameter(config.layer_scale_init_value * torch.ones((dim)), requires_grad=True)
self.layer_scale_2 = nn.Parameter(config.layer_scale_init_value * torch.ones((dim)), requires_grad=True)
def forward(self, hidden_states: torch.Tensor) -> Tuple[torch.Tensor]:
outputs = self.token_mixer(hidden_states)
if self.use_layer_scale:
layer_output = hidden_states + self.drop_path(self.layer_scale_1.unsqueeze(-1).unsqueeze(-1) * outputs)
layer_output = layer_output + self.drop_path(
self.layer_scale_2.unsqueeze(-1).unsqueeze(-1) * self.mlp(layer_output)
)
else:
layer_output = hidden_states + self.drop_path(outputs)
layer_output = layer_output + self.drop_path(self.mlp(layer_output))
return layer_output
class EfficientFormerMeta4DLayers(nn.Module):
def __init__(self, config: EfficientFormerConfig, stage_idx: int):
super().__init__()
num_layers = (
config.depths[stage_idx] if stage_idx != -1 else config.depths[stage_idx] - config.num_meta3d_blocks
)
drop_paths = [
config.drop_path_rate * (block_idx + sum(config.depths[:stage_idx])) for block_idx in range(num_layers)
]
self.blocks = nn.ModuleList(
[
EfficientFormerMeta4D(config, config.hidden_sizes[stage_idx], drop_path=drop_path)
for drop_path in drop_paths
]
)
def forward(self, hidden_states: torch.Tensor) -> Tuple[torch.Tensor]:
for layer_module in self.blocks:
hidden_states = layer_module(hidden_states)
return hidden_states
class EfficientFormerIntermediateStage(nn.Module):
def __init__(self, config: EfficientFormerConfig, index: int):
super().__init__()
self.meta4D_layers = EfficientFormerMeta4DLayers(config, index)
def forward(self, hidden_states: torch.Tensor) -> Tuple[torch.Tensor]:
hidden_states = self.meta4D_layers(hidden_states)
return hidden_states
class EfficientFormerLastStage(nn.Module):
def __init__(self, config: EfficientFormerConfig):
super().__init__()
self.meta4D_layers = EfficientFormerMeta4DLayers(config, -1)
self.flat = EfficientFormerFlat()
self.meta3D_layers = EfficientFormerMeta3DLayers(config)
def forward(self, hidden_states: torch.Tensor, output_attentions: bool = False) -> Tuple[torch.Tensor]:
hidden_states = self.meta4D_layers(hidden_states)
hidden_states = self.flat(hidden_states)
hidden_states = self.meta3D_layers(hidden_states, output_attentions)
return hidden_states
class EfficientFormerEncoder(nn.Module):
def __init__(self, config: EfficientFormerConfig):
super().__init__()
self.config = config
num_intermediate_stages = len(config.depths) - 1
downsamples = [
config.downsamples[i] or config.hidden_sizes[i] != config.hidden_sizes[i + 1]
for i in range(num_intermediate_stages)
]
intermediate_stages = []
for i in range(num_intermediate_stages):
intermediate_stages.append(EfficientFormerIntermediateStage(config, i))
if downsamples[i]:
intermediate_stages.append(
EfficientFormerPatchEmbeddings(config, config.hidden_sizes[i], config.hidden_sizes[i + 1])
)
self.intermediate_stages = nn.ModuleList(intermediate_stages)
self.last_stage = EfficientFormerLastStage(config)
def forward(
self,
hidden_states: torch.Tensor,
output_hidden_states: bool = False,
output_attentions: bool = False,
return_dict: bool = True,
) -> BaseModelOutput:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
for layer_module in self.intermediate_stages:
hidden_states = layer_module(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_output = self.last_stage(hidden_states, output_attentions=output_attentions)
if output_attentions:
all_self_attentions = all_self_attentions + layer_output[1:]
if output_hidden_states:
all_hidden_states = all_hidden_states + (layer_output[0],)
if not return_dict:
return tuple(v for v in [layer_output[0], all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=layer_output[0],
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class EfficientFormerPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EfficientFormerConfig
base_model_prefix = "efficientformer"
main_input_name = "pixel_values"
supports_gradient_checkpointing = False
def _init_weights(self, module: nn.Module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
EFFICIENTFORMER_START_DOCSTRING = r"""
This model is a PyTorch [nn.Module](https://pytorch.org/docs/stable/nn.html#nn.Module) subclass. Use it as a
regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and behavior.
Parameters:
config ([`EfficientFormerConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
EFFICIENTFORMER_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`ViTImageProcessor`]. See
[`ViTImageProcessor.preprocess`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare EfficientFormer Model transformer outputting raw hidden-states without any specific head on top.",
EFFICIENTFORMER_START_DOCSTRING,
)
class EfficientFormerModel(EfficientFormerPreTrainedModel):
def __init__(self, config: EfficientFormerConfig):
super().__init__(config)
self.config = config
self.patch_embed = EfficientFormerConvStem(config, config.hidden_sizes[0])
self.encoder = EfficientFormerEncoder(config)
self.layernorm = nn.LayerNorm(config.hidden_sizes[-1], eps=config.layer_norm_eps)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(EFFICIENTFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPooling,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
embedding_output = self.patch_embed(pixel_values)
encoder_outputs = self.encoder(
embedding_output, output_attentions=output_attentions, output_hidden_states=output_hidden_states
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output)
if not return_dict:
head_outputs = (sequence_output,)
return head_outputs + encoder_outputs[1:]
return BaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings(
"""
EfficientFormer Model transformer with an image classification head on top (a linear layer on top of the final
hidden state of the [CLS] token) e.g. for ImageNet.
""",
EFFICIENTFORMER_START_DOCSTRING,
)
class EfficientFormerForImageClassification(EfficientFormerPreTrainedModel):
def __init__(self, config: EfficientFormerConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.efficientformer = EfficientFormerModel(config)
# Classifier head
self.classifier = (
nn.Linear(config.hidden_sizes[-1], config.num_labels) if config.num_labels > 0 else nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(EFFICIENTFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=ImageClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, ImageClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.efficientformer(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output.mean(-2))
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@dataclass
class EfficientFormerForImageClassificationWithTeacherOutput(ModelOutput):
"""
Output type of [`EfficientFormerForImageClassificationWithTeacher`].
Args:
logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores as the average of the cls_logits and distillation logits.
cls_logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the classification head (i.e. the linear layer on top of the final hidden state of the
class token).
distillation_logits (`torch.FloatTensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the distillation head (i.e. the linear layer on top of the final hidden state of the
distillation token).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
logits: torch.FloatTensor = None
cls_logits: torch.FloatTensor = None
distillation_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@add_start_docstrings(
"""
EfficientFormer Model transformer with image classification heads on top (a linear layer on top of the final hidden
state of the [CLS] token and a linear layer on top of the final hidden state of the distillation token) e.g. for
ImageNet.
<Tip warning={true}>
This model supports inference-only. Fine-tuning with distillation (i.e. with a teacher) is not yet
supported.
</Tip>
""",
EFFICIENTFORMER_START_DOCSTRING,
)
class EfficientFormerForImageClassificationWithTeacher(EfficientFormerPreTrainedModel):
def __init__(self, config: EfficientFormerConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.efficientformer = EfficientFormerModel(config)
# Classifier head
self.classifier = nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
# Distillation head
self.distillation_classifier = (
nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(EFFICIENTFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=EfficientFormerForImageClassificationWithTeacherOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, EfficientFormerForImageClassificationWithTeacherOutput]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.efficientformer(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
cls_logits = self.classifier(sequence_output.mean(-2))
distillation_logits = self.distillation_classifier(sequence_output.mean(-2))
# during inference, return the average of both classifier predictions
logits = (cls_logits + distillation_logits) / 2
if not return_dict:
output = (logits, cls_logits, distillation_logits) + outputs[1:]
return output
return EfficientFormerForImageClassificationWithTeacherOutput(
logits=logits,
cls_logits=cls_logits,
distillation_logits=distillation_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 33,848 | 40.944238 | 159 | py |
transformers | transformers-main/src/transformers/models/efficientformer/modeling_tf_efficientformer.py | # coding=utf-8
# Copyright 2023 Snapchat Research and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TensorFlow EfficientFormer model."""
import itertools
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import ACT2FN
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPooling,
TFImageClassifierOutput,
)
from ...modeling_tf_utils import (
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
)
from .configuration_efficientformer import EfficientFormerConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "EfficientFormerConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "snap-research/efficientformer-l1-300"
_EXPECTED_OUTPUT_SHAPE = [1, 49, 448]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "snap-research/efficientformer-l1-300"
_IMAGE_CLASS_EXPECTED_OUTPUT = "LABEL_281"
TF_EFFICIENTFORMER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"snap-research/efficientformer-l1-300",
# See all EfficientFormer models at https://huggingface.co/models?filter=efficientformer
]
class TFEfficientFormerPatchEmbeddings(tf.keras.layers.Layer):
"""
This class performs downsampling between two stages. For the input tensor with the shape [batch_size, num_channels,
height, width] it produces output tensor with the shape [batch_size, num_channels, height/stride, width/stride]
"""
def __init__(
self, config: EfficientFormerConfig, num_channels: int, embed_dim: int, apply_norm: bool = True, **kwargs
) -> None:
super().__init__(**kwargs)
self.num_channels = num_channels
self.padding = tf.keras.layers.ZeroPadding2D(padding=config.downsample_pad)
self.projection = tf.keras.layers.Conv2D(
filters=embed_dim,
kernel_size=config.downsample_patch_size,
strides=config.downsample_stride,
padding="valid",
name="projection",
)
# Use same default momentum and epsilon as PyTorch equivalent for BatchNormalization
self.norm = (
tf.keras.layers.BatchNormalization(axis=-1, epsilon=config.batch_norm_eps, momentum=0.9, name="norm")
if apply_norm
else tf.identity
)
def call(self, pixel_values: tf.Tensor, training: bool = False) -> tf.Tensor:
tf.debugging.assert_shapes(
[(pixel_values, (..., None, None, self.num_channels))],
message="Make sure that the channel dimension of the pixel values match with the one set in the configuration.",
)
embeddings = self.projection(self.padding(pixel_values))
embeddings = self.norm(embeddings, training=training)
return embeddings
class TFEfficientFormerSelfAttention(tf.keras.layers.Layer):
def __init__(
self,
dim: int,
key_dim: int,
num_heads: int,
attention_ratio: int,
resolution: int,
config: EfficientFormerConfig,
**kwargs,
):
super().__init__(**kwargs)
self.num_heads = num_heads
self.key_dim = key_dim
self.attention_ratio = attention_ratio
self.scale = key_dim**-0.5
self.total_key_dim = key_dim * num_heads
self.expanded_key_dim = int(attention_ratio * key_dim)
self.total_expanded_key_dim = int(self.expanded_key_dim * num_heads)
hidden_size = self.total_expanded_key_dim + self.total_key_dim * 2
self.qkv = tf.keras.layers.Dense(
units=hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="qkv"
)
self.projection = tf.keras.layers.Dense(
units=dim, kernel_initializer=get_initializer(config.initializer_range), name="projection"
)
self.resolution = resolution
def build(self, input_shape: tf.TensorShape) -> None:
points = list(itertools.product(range(self.resolution), range(self.resolution)))
num_points = len(points)
attention_offsets = {}
idxs = []
for point_1 in points:
for point_2 in points:
offset = (abs(point_1[0] - point_2[0]), abs(point_1[1] - point_2[1]))
if offset not in attention_offsets:
attention_offsets[offset] = len(attention_offsets)
idxs.append(attention_offsets[offset])
self.attention_biases = self.add_weight(
shape=(self.num_heads, len(attention_offsets)),
initializer=tf.keras.initializers.zeros(),
trainable=True,
name="attention_biases",
)
self.attention_bias_idxs = self.add_weight(
shape=(num_points, num_points),
trainable=False,
dtype=tf.int32,
name="attention_bias_idxs",
)
self.attention_bias_idxs.assign(tf.reshape(tf.cast(idxs, dtype=tf.int32), (num_points, num_points)))
super().build(input_shape)
def call(
self, hidden_states: tf.Tensor, output_attentions: bool = False, training: bool = False
) -> Tuple[tf.Tensor]:
batch_size, sequence_length, *_ = shape_list(hidden_states)
qkv = self.qkv(inputs=hidden_states)
query_layer, key_layer, value_layer = tf.split(
tf.reshape(tensor=qkv, shape=(batch_size, sequence_length, self.num_heads, -1)),
num_or_size_splits=[self.key_dim, self.key_dim, self.expanded_key_dim],
axis=3,
)
query_layer = tf.transpose(query_layer, perm=[0, 2, 1, 3])
key_layer = tf.transpose(key_layer, perm=[0, 2, 1, 3])
value_layer = tf.transpose(value_layer, perm=[0, 2, 1, 3])
attention_probs = tf.matmul(query_layer, tf.transpose(key_layer, perm=[0, 1, 3, 2]))
scale = tf.cast(self.scale, dtype=attention_probs.dtype)
attention_probs = tf.multiply(attention_probs, scale)
attention_biases = tf.gather(params=self.attention_biases, indices=self.attention_bias_idxs, axis=1)
attention_probs = attention_probs + attention_biases
attention_probs = stable_softmax(logits=attention_probs, axis=-1)
context_layer = tf.matmul(attention_probs, value_layer)
context_layer = tf.transpose(context_layer, perm=[0, 2, 1, 3])
context_layer = tf.reshape(
tensor=context_layer, shape=(batch_size, sequence_length, self.total_expanded_key_dim)
)
context_layer = self.projection(context_layer)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
class TFEfficientFormerConvStem(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, out_channels: int, **kwargs):
super().__init__(**kwargs)
self.padding = tf.keras.layers.ZeroPadding2D(padding=1)
self.convolution1 = tf.keras.layers.Conv2D(
filters=out_channels // 2, kernel_size=3, strides=2, padding="valid", name="convolution1"
)
# Use same default momentum and epsilon as PyTorch equivalent for BatchNormalization
self.batchnorm_before = tf.keras.layers.BatchNormalization(
axis=-1, epsilon=config.batch_norm_eps, momentum=0.9, name="batchnorm_before"
)
self.convolution2 = tf.keras.layers.Conv2D(
filters=out_channels,
kernel_size=3,
strides=2,
padding="valid",
name="convolution2",
)
# Use same default momentum and epsilon as PyTorch equivalent for BatchNormalization
self.batchnorm_after = tf.keras.layers.BatchNormalization(
axis=-1, epsilon=config.batch_norm_eps, momentum=0.9, name="batchnorm_after"
)
self.activation = tf.keras.layers.Activation(activation=tf.keras.activations.relu, name="activation")
def call(self, pixel_values: tf.Tensor, training: bool = False) -> tf.Tensor:
features = self.batchnorm_before(self.convolution1(self.padding(pixel_values)), training=training)
features = self.activation(features)
features = self.batchnorm_after(self.convolution2(self.padding(features)), training=training)
features = self.activation(features)
return features
class TFEfficientFormerPooling(tf.keras.layers.Layer):
def __init__(self, pool_size: int, **kwargs):
super().__init__(**kwargs)
self.pool = tf.keras.layers.AveragePooling2D(pool_size=pool_size, strides=1, padding="same")
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
output = self.pool(hidden_states)
output = output - hidden_states
return output
class TFEfficientFormerDenseMlp(tf.keras.layers.Layer):
def __init__(
self,
config: EfficientFormerConfig,
in_features: int,
hidden_features: Optional[int] = None,
out_features: Optional[int] = None,
**kwargs,
):
super().__init__(**kwargs)
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.linear_in = tf.keras.layers.Dense(
units=hidden_features, kernel_initializer=get_initializer(config.initializer_range), name="linear_in"
)
self.activation = ACT2FN[config.hidden_act]
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
self.linear_out = tf.keras.layers.Dense(
units=out_features, kernel_initializer=get_initializer(config.initializer_range), name="linear_out"
)
def call(self, hidden_states: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.linear_in(inputs=hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.linear_out(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
return hidden_states
class TFEfficientFormerConvMlp(tf.keras.layers.Layer):
def __init__(
self,
config: EfficientFormerConfig,
in_features: int,
hidden_features: Optional[int] = None,
out_features: Optional[int] = None,
drop: float = 0.0,
**kwargs,
):
super().__init__(**kwargs)
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.convolution1 = tf.keras.layers.Conv2D(
filters=hidden_features,
kernel_size=1,
name="convolution1",
padding="valid",
)
self.activation = ACT2FN[config.hidden_act]
self.convolution2 = tf.keras.layers.Conv2D(
filters=out_features,
kernel_size=1,
name="convolution2",
padding="valid",
)
self.dropout = tf.keras.layers.Dropout(rate=drop)
# Use same default momentum and epsilon as PyTorch equivalent for BatchNormalization
self.batchnorm_before = tf.keras.layers.BatchNormalization(
axis=-1, epsilon=config.batch_norm_eps, momentum=0.9, name="batchnorm_before"
)
# Use same default momentum and epsilon as PyTorch equivalent for BatchNormalization
self.batchnorm_after = tf.keras.layers.BatchNormalization(
axis=-1, epsilon=config.batch_norm_eps, momentum=0.9, name="batchnorm_after"
)
def call(self, hidden_state: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_state = self.convolution1(hidden_state)
hidden_state = self.batchnorm_before(hidden_state, training=training)
hidden_state = self.activation(hidden_state)
hidden_state = self.dropout(hidden_state, training=training)
hidden_state = self.convolution2(hidden_state)
hidden_state = self.batchnorm_after(hidden_state, training=training)
hidden_state = self.dropout(hidden_state, training=training)
return hidden_state
# Copied from transformers.models.convnext.modeling_tf_convnext.TFConvNextDropPath with ConvNext->EfficientFormer
class TFEfficientFormerDropPath(tf.keras.layers.Layer):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
References:
(1) github.com:rwightman/pytorch-image-models
"""
def __init__(self, drop_path, **kwargs):
super().__init__(**kwargs)
self.drop_path = drop_path
def call(self, x, training=None):
if training:
keep_prob = 1 - self.drop_path
shape = (tf.shape(x)[0],) + (1,) * (len(tf.shape(x)) - 1)
random_tensor = keep_prob + tf.random.uniform(shape, 0, 1)
random_tensor = tf.floor(random_tensor)
return (x / keep_prob) * random_tensor
return x
class TFEfficientFormerFlat(tf.keras.layers.Layer):
def __init__(self, **kwargs):
super().__init__(**kwargs)
def call(self, hidden_states: tf.Tensor) -> Tuple[tf.Tensor]:
batch_size, _, _, in_channels = shape_list(hidden_states)
hidden_states = tf.reshape(hidden_states, shape=[batch_size, -1, in_channels])
return hidden_states
class TFEfficientFormerMeta3D(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, dim: int, drop_path: float = 0.0, **kwargs):
super().__init__(**kwargs)
self.token_mixer = TFEfficientFormerSelfAttention(
dim=config.dim,
key_dim=config.key_dim,
num_heads=config.num_attention_heads,
attention_ratio=config.attention_ratio,
resolution=config.resolution,
name="token_mixer",
config=config,
)
self.dim = dim
self.config = config
self.layernorm1 = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layernorm1")
self.layernorm2 = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layernorm2")
mlp_hidden_dim = int(dim * config.mlp_expansion_ratio)
self.mlp = TFEfficientFormerDenseMlp(config, in_features=dim, hidden_features=mlp_hidden_dim, name="mlp")
# Using `layers.Activation` instead of `tf.identity` to better control `training' behavior.
self.drop_path = (
TFEfficientFormerDropPath(drop_path)
if drop_path > 0.0
else tf.keras.layers.Activation("linear", name="drop_path")
)
self.config = config
def build(self, input_shape: tf.TensorShape):
self.layer_scale_1 = None
self.layer_scale_2 = None
if self.config.use_layer_scale:
self.layer_scale_1 = self.add_weight(
shape=(self.dim,),
initializer=tf.keras.initializers.Constant(value=self.config.layer_scale_init_value),
trainable=True,
name="layer_scale_1",
)
self.layer_scale_2 = self.add_weight(
shape=(self.dim,),
initializer=tf.keras.initializers.Constant(value=self.config.layer_scale_init_value),
trainable=True,
name="layer_scale_2",
)
super().build(input_shape)
def call(
self, hidden_states: tf.Tensor, output_attentions: bool = False, training: bool = False
) -> Tuple[tf.Tensor]:
self_attention_outputs = self.token_mixer(
hidden_states=self.layernorm1(hidden_states, training=training),
output_attentions=output_attentions,
training=training,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
if self.config.use_layer_scale:
layer_output = hidden_states + self.drop_path(
tf.expand_dims(tf.expand_dims(self.layer_scale_1, 0), 0) * attention_output,
training=training,
)
layer_output = layer_output + self.drop_path(
tf.expand_dims(tf.expand_dims(self.layer_scale_2, 0), 0)
* self.mlp(hidden_states=self.layernorm2(inputs=layer_output, training=training), training=training),
training=training,
)
else:
layer_output = hidden_states + self.drop_path(attention_output, training=training)
layer_output = layer_output + self.drop_path(
self.mlp(hidden_states=self.layernorm2(inputs=layer_output, training=training), training=training),
training=training,
)
outputs = (layer_output,) + outputs
return outputs
class TFEfficientFormerMeta3DLayers(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, **kwargs):
super().__init__(**kwargs)
drop_paths = [
config.drop_path_rate * (block_idx + sum(config.depths[:-1]))
for block_idx in range(config.num_meta3d_blocks)
]
self.blocks = [
TFEfficientFormerMeta3D(config, config.hidden_sizes[-1], drop_path=drop_path, name=f"blocks.{i}")
for i, drop_path in enumerate(drop_paths)
]
def call(
self, hidden_states: tf.Tensor, output_attentions: bool = False, training: bool = False
) -> Tuple[tf.Tensor]:
all_attention_outputs = () if output_attentions else None
for i, layer_module in enumerate(self.blocks):
if isinstance(hidden_states, tuple):
hidden_states = hidden_states[0]
hidden_states = layer_module(
hidden_states=hidden_states, output_attentions=output_attentions, training=training
)
if output_attentions:
all_attention_outputs = all_attention_outputs + (hidden_states[1],)
if output_attentions:
outputs = (hidden_states[0],) + all_attention_outputs
return outputs
return hidden_states
class TFEfficientFormerMeta4D(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, dim: int, drop_path: float = 0.0, **kwargs):
super().__init__(**kwargs)
pool_size = config.pool_size if config.pool_size is not None else 3
self.token_mixer = TFEfficientFormerPooling(pool_size=pool_size, name="token_mixer")
self.dim = dim
mlp_hidden_dim = int(dim * config.mlp_expansion_ratio)
self.mlp = TFEfficientFormerConvMlp(
config=config, in_features=dim, hidden_features=mlp_hidden_dim, drop=config.hidden_dropout_prob, name="mlp"
)
self.drop_path = (
TFEfficientFormerDropPath(drop_path, name="drop_path")
if drop_path > 0.0
else tf.keras.layers.Activation("linear", name="drop_path")
)
self.config = config
def build(self, input_shape: tf.TensorShape):
self.layer_scale_1 = None
self.layer_scale_2 = None
if self.config.use_layer_scale:
self.layer_scale_1 = self.add_weight(
shape=(self.dim),
initializer=tf.keras.initializers.Constant(value=self.config.layer_scale_init_value),
trainable=True,
name="layer_scale_1",
)
self.layer_scale_2 = self.add_weight(
shape=(self.dim),
initializer=tf.keras.initializers.Constant(value=self.config.layer_scale_init_value),
trainable=True,
name="layer_scale_2",
)
super().build(input_shape)
def call(self, hidden_states: tf.Tensor, training: bool = False) -> Tuple[tf.Tensor]:
outputs = self.token_mixer(hidden_states)
if self.config.use_layer_scale:
layer_output = hidden_states + self.drop_path(
tf.expand_dims(tf.expand_dims(self.layer_scale_1, 0), 0) * outputs,
training=training,
)
layer_output = layer_output + self.drop_path(
tf.expand_dims(tf.expand_dims(self.layer_scale_2, 0), 0)
* self.mlp(hidden_state=layer_output, training=training),
training=training,
)
else:
layer_output = hidden_states + self.drop_path(outputs, training=training)
layer_output = layer_output + self.drop_path(
self.mlp(hidden_state=layer_output, training=training), training=training
)
return layer_output
class TFEfficientFormerMeta4DLayers(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, stage_idx: int, **kwargs):
super().__init__(**kwargs)
num_layers = (
config.depths[stage_idx] if stage_idx != -1 else config.depths[stage_idx] - config.num_meta3d_blocks
)
drop_paths = [
config.drop_path_rate * (block_idx + sum(config.depths[:stage_idx])) for block_idx in range(num_layers)
]
self.blocks = [
TFEfficientFormerMeta4D(
config=config, dim=config.hidden_sizes[stage_idx], drop_path=drop_paths[i], name=f"blocks.{i}"
)
for i in range(len(drop_paths))
]
def call(self, hidden_states: tf.Tensor, training: bool = False) -> Tuple[tf.Tensor]:
for layer_module in self.blocks:
hidden_states = layer_module(hidden_states=hidden_states, training=training)
return hidden_states
class TFEfficientFormerIntermediateStage(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, index: int, **kwargs):
super().__init__(**kwargs)
self.meta4D_layers = TFEfficientFormerMeta4DLayers(config=config, stage_idx=index, name="meta4D_layers")
def call(self, hidden_states: tf.Tensor, training: bool = False) -> Tuple[tf.Tensor]:
hidden_states = self.meta4D_layers(hidden_states=hidden_states, training=training)
return hidden_states
class TFEfficientFormerLastStage(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, **kwargs):
super().__init__(**kwargs)
self.meta4D_layers = TFEfficientFormerMeta4DLayers(config=config, stage_idx=-1, name="meta4D_layers")
self.flat = TFEfficientFormerFlat(name="flat")
self.meta3D_layers = TFEfficientFormerMeta3DLayers(config, name="meta3D_layers")
def call(
self, hidden_states: tf.Tensor, output_attentions: bool = False, training: bool = False
) -> Tuple[tf.Tensor]:
hidden_states = self.meta4D_layers(hidden_states=hidden_states, training=training)
hidden_states = self.flat(hidden_states=hidden_states)
hidden_states = self.meta3D_layers(
hidden_states=hidden_states, output_attentions=output_attentions, training=training
)
return hidden_states
class TFEfficientFormerEncoder(tf.keras.layers.Layer):
def __init__(self, config: EfficientFormerConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
num_intermediate_stages = len(config.depths) - 1
downsamples = [
config.downsamples[i] or config.hidden_sizes[i] != config.hidden_sizes[i + 1]
for i in range(num_intermediate_stages)
]
intermediate_stages = []
layer_count = -1
for i in range(num_intermediate_stages):
layer_count += 1
intermediate_stages.append(
TFEfficientFormerIntermediateStage(config, i, name=f"intermediate_stages.{layer_count}")
)
if downsamples[i]:
layer_count += 1
intermediate_stages.append(
TFEfficientFormerPatchEmbeddings(
config,
config.hidden_sizes[i],
config.hidden_sizes[i + 1],
name=f"intermediate_stages.{layer_count}",
)
)
self.intermediate_stages = intermediate_stages
self.last_stage = TFEfficientFormerLastStage(config, name="last_stage")
def call(
self,
hidden_states: tf.Tensor,
output_hidden_states: bool,
output_attentions: bool,
return_dict: bool,
training: bool = False,
) -> TFBaseModelOutput:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
for layer_module in self.intermediate_stages:
hidden_states = layer_module(hidden_states, training=training)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_output = self.last_stage(hidden_states, output_attentions=output_attentions, training=training)
if output_attentions:
all_self_attentions = all_self_attentions + layer_output[1:]
if output_hidden_states:
all_hidden_states = all_hidden_states + (layer_output[0],)
if not return_dict:
return tuple(v for v in [layer_output[0], all_hidden_states, all_self_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=layer_output[0],
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
@keras_serializable
class TFEfficientFormerMainLayer(tf.keras.layers.Layer):
config_class = EfficientFormerConfig
def __init__(self, config: EfficientFormerConfig, **kwargs) -> None:
super().__init__(**kwargs)
self.config = config
self.patch_embed = TFEfficientFormerConvStem(config, config.hidden_sizes[0], name="patch_embed")
self.encoder = TFEfficientFormerEncoder(config, name="encoder")
self.layernorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layernorm")
@unpack_inputs
def call(
self,
pixel_values: Optional[tf.Tensor] = None,
output_attentions: Optional[tf.Tensor] = None,
output_hidden_states: Optional[tf.Tensor] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor, ...]]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# When running on CPU, tf.keras.layers.Conv2D and tf.keras.layers.AveragePool2D do not
# support channels first NCHW format. A number of blocks contain both.
# So change the input format from (batch_size, num_channels, height, width) to
# (batch_size, height, width, num_channels) here.
# shape = (batch_size, in_height, in_width, in_channels=num_channels)
pixel_values = tf.transpose(pixel_values, perm=(0, 2, 3, 1))
embedding_output = self.patch_embed(pixel_values, training=training)
encoder_outputs = self.encoder(
hidden_states=embedding_output,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output, training=training)
# Change the hidden states from (batch_size, height, width, num_channels) to
# (batch_size, num_channels, height, width).
# The hidden states are in (batch_size, height, width, num_channels)
# shape after all stages except the MB3D blocks.
if output_hidden_states:
hidden_states = tuple([tf.transpose(h, perm=(0, 3, 1, 2)) for h in encoder_outputs[1][:-1]]) + (
encoder_outputs[1][-1],
)
if not return_dict:
head_outputs = (sequence_output,)
return head_outputs + encoder_outputs[1:]
return TFBaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=hidden_states if output_hidden_states else encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TFEfficientFormerPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EfficientFormerConfig
base_model_prefix = "efficientformer"
main_input_name = "pixel_values"
EFFICIENTFORMER_START_DOCSTRING = r"""
This model is a TensorFlow
[tf.keras.layers.Layer](https://www.tensorflow.org/api_docs/python/tf/keras/layers/Layer). Use it as a regular
TensorFlow Module and refer to the TensorFlow documentation for all matter related to general usage and behavior.
Parameters:
config ([`EfficientFormerConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
EFFICIENTFORMER_INPUTS_DOCSTRING = r"""
Args:
pixel_values ((`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`EfficientFormerImageProcessor.__call__`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare EfficientFormer Model transformer outputting raw hidden-states without any specific head on top.",
EFFICIENTFORMER_START_DOCSTRING,
)
class TFEfficientFormerModel(TFEfficientFormerPreTrainedModel):
def __init__(self, config: EfficientFormerConfig, **kwargs) -> None:
super().__init__(config, **kwargs)
self.efficientformer = TFEfficientFormerMainLayer(config, name="efficientformer")
@unpack_inputs
@add_start_docstrings_to_model_forward(EFFICIENTFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPooling,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def call(
self,
pixel_values: Optional[tf.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[Tuple, TFBaseModelOutput]:
outputs = self.efficientformer(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
@add_start_docstrings(
"""
EfficientFormer Model transformer with an image classification head on top of pooled last hidden state, e.g. for
ImageNet.
""",
EFFICIENTFORMER_START_DOCSTRING,
)
class TFEfficientFormerForImageClassification(TFEfficientFormerPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config: EfficientFormerConfig):
super().__init__(config)
self.num_labels = config.num_labels
self.efficientformer = TFEfficientFormerMainLayer(config, name="efficientformer")
# Classifier head
self.classifier = (
tf.keras.layers.Dense(config.num_labels, name="classifier")
if config.num_labels > 0
else tf.keras.layers.Activation("linear", name="classifier")
)
@unpack_inputs
@add_start_docstrings_to_model_forward(EFFICIENTFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=TFImageClassifierOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def call(
self,
pixel_values: Optional[tf.Tensor] = None,
labels: Optional[tf.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[tf.Tensor, TFImageClassifierOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.efficientformer(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(tf.reduce_mean(sequence_output, axis=-2))
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFImageClassifierOutput(
loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions
)
@dataclass
class TFEfficientFormerForImageClassificationWithTeacherOutput(ModelOutput):
"""
Args:
Output type of [`EfficientFormerForImageClassificationWithTeacher`].
logits (`tf.Tensor` of shape `(batch_size, config.num_labels)`):
Prediction scores as the average of the cls_logits and distillation logits.
cls_logits (`tf.Tensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the classification head (i.e. the linear layer on top of the final hidden state of the
class token).
distillation_logits (`tf.Tensor` of shape `(batch_size, config.num_labels)`):
Prediction scores of the distillation head (i.e. the linear layer on top of the final hidden state of the
distillation token).
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when
`config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer plus
the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when
`config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
"""
logits: tf.Tensor = None
cls_logits: tf.Tensor = None
distillation_logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
@add_start_docstrings(
"""
EfficientFormer Model transformer with image classification heads on top (a linear layer on top of the final hidden
state and a linear layer on top of the final hidden state of the distillation token) e.g. for ImageNet.
.. warning::
This model supports inference-only. Fine-tuning with distillation (i.e. with a teacher) is not yet
supported.
""",
EFFICIENTFORMER_START_DOCSTRING,
)
class TFEfficientFormerForImageClassificationWithTeacher(TFEfficientFormerPreTrainedModel):
def __init__(self, config: EfficientFormerConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.efficientformer = TFEfficientFormerMainLayer(config, name="efficientformer")
# Classifier heads
self.classifier = (
tf.keras.layers.Dense(config.num_labels, name="classifier")
if config.num_labels > 0
else tf.keras.layers.Activation("linear", name="classifier")
)
self.distillation_classifier = (
tf.keras.layers.Dense(config.num_labels, name="distillation_classifier")
if config.num_labels > 0
else tf.keras.layers.Activation("linear", name="distillation_classifier")
)
@unpack_inputs
@add_start_docstrings_to_model_forward(EFFICIENTFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=TFEfficientFormerForImageClassificationWithTeacherOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def call(
self,
pixel_values: Optional[tf.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[tuple, TFEfficientFormerForImageClassificationWithTeacherOutput]:
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if training:
raise Exception(
"This model supports inference-only. Fine-tuning with distillation (i.e. with a teacher) is not yet supported."
)
outputs = self.efficientformer(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
cls_logits = self.classifier(tf.reduce_mean(sequence_output, axis=-2))
distillation_logits = self.distillation_classifier(tf.reduce_mean(sequence_output, axis=-2))
logits = (cls_logits + distillation_logits) / 2
if not return_dict:
output = (logits, cls_logits, distillation_logits) + outputs[1:]
return output
return TFEfficientFormerForImageClassificationWithTeacherOutput(
logits=logits,
cls_logits=cls_logits,
distillation_logits=distillation_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 40,444 | 39.97771 | 127 | py |
transformers | transformers-main/src/transformers/models/efficientformer/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_torch_available,
is_vision_available,
)
_import_structure = {
"configuration_efficientformer": [
"EFFICIENTFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP",
"EfficientFormerConfig",
]
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_efficientformer"] = ["EfficientFormerImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_efficientformer"] = [
"EFFICIENTFORMER_PRETRAINED_MODEL_ARCHIVE_LIST",
"EfficientFormerForImageClassification",
"EfficientFormerForImageClassificationWithTeacher",
"EfficientFormerModel",
"EfficientFormerPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_efficientformer"] = [
"TF_EFFICIENTFORMER_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFEfficientFormerForImageClassification",
"TFEfficientFormerForImageClassificationWithTeacher",
"TFEfficientFormerModel",
"TFEfficientFormerPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_efficientformer import EFFICIENTFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP, EfficientFormerConfig
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_efficientformer import EfficientFormerImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_efficientformer import (
EFFICIENTFORMER_PRETRAINED_MODEL_ARCHIVE_LIST,
EfficientFormerForImageClassification,
EfficientFormerForImageClassificationWithTeacher,
EfficientFormerModel,
EfficientFormerPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_efficientformer import (
TF_EFFICIENTFORMER_PRETRAINED_MODEL_ARCHIVE_LIST,
TFEfficientFormerForImageClassification,
TFEfficientFormerForImageClassificationWithTeacher,
TFEfficientFormerModel,
TFEfficientFormerPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 3,550 | 31.281818 | 115 | py |
transformers | transformers-main/src/transformers/models/efficientformer/image_processing_efficientformer.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for EfficientFormer."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
center_crop,
get_resize_output_image_size,
normalize,
rescale,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
is_batched,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, logging
logger = logging.get_logger(__name__)
class EfficientFormerImageProcessor(BaseImageProcessor):
r"""
Constructs a EfficientFormer image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `(size["height"],
size["width"])`. Can be overridden by the `do_resize` parameter in the `preprocess` method.
size (`dict`, *optional*, defaults to `{"height": 224, "width": 224}`):
Size of the output image after resizing. Can be overridden by the `size` parameter in the `preprocess`
method.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BILINEAR`):
Resampling filter to use if resizing the image. Can be overridden by the `resample` parameter in the
`preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image to the specified `crop_size`. Can be overridden by `do_center_crop` in the
`preprocess` method.
crop_size (`Dict[str, int]` *optional*, defaults to 224):
Size of the output image after applying `center_crop`. Can be overridden by `crop_size` in the `preprocess`
method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize:
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Optional[Dict[str, int]] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_center_crop: bool = True,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
crop_size: Dict[str, int] = None,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"height": 224, "width": 224}
size = get_size_dict(size)
crop_size = crop_size if crop_size is not None else {"height": 224, "width": 224}
crop_size = get_size_dict(crop_size, default_to_square=True, param_name="crop_size")
self.do_resize = do_resize
self.do_rescale = do_rescale
self.do_normalize = do_normalize
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.size = size
self.resample = resample
self.rescale_factor = rescale_factor
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BILINEAR,
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to `(size["height"], size["width"])`.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Dictionary in the format `{"height": int, "width": int}` specifying the size of the output image.
resample:
`PILImageResampling` filter to use when resizing the image e.g. `PILImageResampling.BILINEAR`.
data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
Returns:
`np.ndarray`: The resized image.
"""
size = get_size_dict(size)
if "shortest_edge" in size:
size = get_resize_output_image_size(image, size=size["shortest_edge"], default_to_square=False)
# size = get_resize_output_image_size(image, size["shortest_edge"], size["longest_edge"])
elif "height" in size and "width" in size:
size = (size["height"], size["width"])
else:
raise ValueError(f"Size must contain 'height' and 'width' keys or 'shortest_edge' key. Got {size.keys()}")
return resize(image, size=size, resample=resample, data_format=data_format, **kwargs)
def center_crop(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Center crop an image. If the image is too small to be cropped to the size given, it will be padded (so the
returned result will always be of size `size`).
Args:
image (`np.ndarray`):
Image to center crop.
size (`Dict[str, int]`):
Size of the output image in the form of a dictionary with keys `height` and `width`.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The `size` parameter must contain the keys (height, width). Got {size.keys()}")
return center_crop(image, size=(size["height"], size["width"]), data_format=data_format, **kwargs)
def rescale(
self, image: np.ndarray, scale: float, data_format: Optional[Union[str, ChannelDimension]] = None, **kwargs
) -> np.ndarray:
"""
Rescale an image by a scale factor. image = image * scale.
Args:
image (`np.ndarray`):
Image to rescale.
scale (`float`):
The scaling factor to rescale pixel values by.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
Returns:
`np.ndarray`: The rescaled image.
"""
return rescale(image, scale=scale, data_format=data_format, **kwargs)
def normalize(
self,
image: np.ndarray,
mean: Union[float, List[float]],
std: Union[float, List[float]],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Normalize an image. image = (image - image_mean) / image_std.
Args:
image (`np.ndarray`):
Image to normalize.
mean (`float` or `List[float]`):
Image mean to use for normalization.
std (`float` or `List[float]`):
Image standard deviation to use for normalization.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
Returns:
`np.ndarray`: The normalized image.
"""
return normalize(image, mean=mean, std=std, data_format=data_format, **kwargs)
def preprocess(
self,
images: ImageInput,
do_resize: Optional[bool] = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: int = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Union[str, ChannelDimension] = ChannelDimension.FIRST,
**kwargs,
) -> BatchFeature:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Dictionary in the format `{"height": h, "width": w}` specifying the size of the output image after
resizing.
resample (`PILImageResampling` filter, *optional*, defaults to `self.resample`):
`PILImageResampling` filter to use if resizing the image e.g. `PILImageResampling.BILINEAR`. Only has
an effect if `do_resize` is set to `True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the center crop. Only has an effect if `do_center_crop` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to use if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to use if `do_normalize` is set to `True`.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size", default_to_square=True)
resample = resample if resample is not None else self.resample
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size_dict = get_size_dict(size)
if not is_batched(images):
images = [images]
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if do_resize and size is None:
raise ValueError("Size must be specified if do_resize is True.")
if do_center_crop and crop_size is None:
raise ValueError("Crop size must be specified if do_center_crop is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if do_resize:
images = [self.resize(image=image, size=size_dict, resample=resample) for image in images]
if do_center_crop:
images = [self.center_crop(image=image, size=crop_size) for image in images]
if do_rescale:
images = [self.rescale(image=image, scale=rescale_factor) for image in images]
if do_normalize:
images = [self.normalize(image=image, mean=image_mean, std=image_std) for image in images]
images = [to_channel_dimension_format(image, data_format) for image in images]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
| 16,416 | 47.571006 | 119 | py |
transformers | transformers-main/src/transformers/models/efficientformer/configuration_efficientformer.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" EfficientFormer model configuration"""
from typing import List
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
EFFICIENTFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"snap-research/efficientformer-l1-300": (
"https://huggingface.co/snap-research/efficientformer-l1-300/resolve/main/config.json"
),
}
class EfficientFormerConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of an [`EfficientFormerModel`]. It is used to
instantiate an EfficientFormer model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the EfficientFormer
[snap-research/efficientformer-l1](https://huggingface.co/snap-research/efficientformer-l1) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
depths (`List(int)`, *optional*, defaults to `[3, 2, 6, 4]`)
Depth of each stage.
hidden_sizes (`List(int)`, *optional*, defaults to `[48, 96, 224, 448]`)
Dimensionality of each stage.
downsamples (`List(bool)`, *optional*, defaults to `[True, True, True, True]`)
Whether or not to downsample inputs between two stages.
dim (`int`, *optional*, defaults to 448):
Number of channels in Meta3D layers
key_dim (`int`, *optional*, defaults to 32):
The size of the key in meta3D block.
attention_ratio (`int`, *optional*, defaults to 4):
Ratio of the dimension of the query and value to the dimension of the key in MSHA block
resolution (`int`, *optional*, defaults to 7)
Size of each patch
num_hidden_layers (`int`, *optional*, defaults to 5):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the 3D MetaBlock.
mlp_expansion_ratio (`int`, *optional*, defaults to 4):
Ratio of size of the hidden dimensionality of an MLP to the dimensionality of its input.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings and encoder.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
pool_size (`int`, *optional*, defaults to 3):
Kernel size of pooling layers.
downsample_patch_size (`int`, *optional*, defaults to 3):
The size of patches in downsampling layers.
downsample_stride (`int`, *optional*, defaults to 2):
The stride of convolution kernels in downsampling layers.
downsample_pad (`int`, *optional*, defaults to 1):
Padding in downsampling layers.
drop_path_rate (`int`, *optional*, defaults to 0):
Rate at which to increase dropout probability in DropPath.
num_meta3d_blocks (`int`, *optional*, defaults to 1):
The number of 3D MetaBlocks in the last stage.
distillation (`bool`, *optional*, defaults to `True`):
Whether to add a distillation head.
use_layer_scale (`bool`, *optional*, defaults to `True`):
Whether to scale outputs from token mixers.
layer_scale_init_value (`float`, *optional*, defaults to 1e-5):
Factor by which outputs from token mixers are scaled.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to `224`):
The size (resolution) of each image.
Example:
```python
>>> from transformers import EfficientFormerConfig, EfficientFormerModel
>>> # Initializing a EfficientFormer efficientformer-l1 style configuration
>>> configuration = EfficientFormerConfig()
>>> # Initializing a EfficientFormerModel (with random weights) from the efficientformer-l3 style configuration
>>> model = EfficientFormerModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "efficientformer"
def __init__(
self,
depths: List[int] = [3, 2, 6, 4],
hidden_sizes: List[int] = [48, 96, 224, 448],
downsamples: List[bool] = [True, True, True, True],
dim: int = 448,
key_dim: int = 32,
attention_ratio: int = 4,
resolution: int = 7,
num_hidden_layers: int = 5,
num_attention_heads: int = 8,
mlp_expansion_ratio: int = 4,
hidden_dropout_prob: float = 0.0,
patch_size: int = 16,
num_channels: int = 3,
pool_size: int = 3,
downsample_patch_size: int = 3,
downsample_stride: int = 2,
downsample_pad: int = 1,
drop_path_rate: float = 0.0,
num_meta3d_blocks: int = 1,
distillation: bool = True,
use_layer_scale: bool = True,
layer_scale_init_value: float = 1e-5,
hidden_act: str = "gelu",
initializer_range: float = 0.02,
layer_norm_eps: float = 1e-12,
image_size: int = 224,
batch_norm_eps: float = 1e-05,
**kwargs,
) -> None:
super().__init__(**kwargs)
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.hidden_sizes = hidden_sizes
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.patch_size = patch_size
self.num_channels = num_channels
self.depths = depths
self.mlp_expansion_ratio = mlp_expansion_ratio
self.downsamples = downsamples
self.dim = dim
self.key_dim = key_dim
self.attention_ratio = attention_ratio
self.resolution = resolution
self.pool_size = pool_size
self.downsample_patch_size = downsample_patch_size
self.downsample_stride = downsample_stride
self.downsample_pad = downsample_pad
self.drop_path_rate = drop_path_rate
self.num_meta3d_blocks = num_meta3d_blocks
self.distillation = distillation
self.use_layer_scale = use_layer_scale
self.layer_scale_init_value = layer_scale_init_value
self.image_size = image_size
self.batch_norm_eps = batch_norm_eps
| 7,919 | 44.517241 | 117 | py |
transformers | transformers-main/src/transformers/models/efficientformer/convert_efficientformer_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert EfficientFormer checkpoints from the original repository.
URL: https://github.com/snap-research/EfficientFormer
"""
import argparse
import re
from pathlib import Path
import requests
import torch
from PIL import Image
from torchvision.transforms import CenterCrop, Compose, Normalize, Resize, ToTensor
from transformers import (
EfficientFormerConfig,
EfficientFormerForImageClassificationWithTeacher,
EfficientFormerImageProcessor,
)
from transformers.image_utils import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD, PILImageResampling
def rename_key(old_name, num_meta4D_last_stage):
new_name = old_name
if "patch_embed" in old_name:
_, layer, param = old_name.split(".")
if layer == "0":
new_name = old_name.replace("0", "convolution1")
elif layer == "1":
new_name = old_name.replace("1", "batchnorm_before")
elif layer == "3":
new_name = old_name.replace("3", "convolution2")
else:
new_name = old_name.replace("4", "batchnorm_after")
if "network" in old_name and re.search(r"\d\.\d", old_name):
two_digit_num = r"\b\d{2}\b"
if bool(re.search(two_digit_num, old_name)):
match = re.search(r"\d\.\d\d.", old_name).group()
else:
match = re.search(r"\d\.\d.", old_name).group()
if int(match[0]) < 6:
trimmed_name = old_name.replace(match, "")
trimmed_name = trimmed_name.replace("network", match[0] + ".meta4D_layers.blocks." + match[2:-1])
new_name = "intermediate_stages." + trimmed_name
else:
trimmed_name = old_name.replace(match, "")
if int(match[2]) < num_meta4D_last_stage:
trimmed_name = trimmed_name.replace("network", "meta4D_layers.blocks." + match[2])
else:
layer_index = str(int(match[2]) - num_meta4D_last_stage)
trimmed_name = trimmed_name.replace("network", "meta3D_layers.blocks." + layer_index)
if "norm1" in old_name:
trimmed_name = trimmed_name.replace("norm1", "layernorm1")
elif "norm2" in old_name:
trimmed_name = trimmed_name.replace("norm2", "layernorm2")
elif "fc1" in old_name:
trimmed_name = trimmed_name.replace("fc1", "linear_in")
elif "fc2" in old_name:
trimmed_name = trimmed_name.replace("fc2", "linear_out")
new_name = "last_stage." + trimmed_name
elif "network" in old_name and re.search(r".\d.", old_name):
new_name = old_name.replace("network", "intermediate_stages")
if "fc" in new_name:
new_name = new_name.replace("fc", "convolution")
elif ("norm1" in new_name) and ("layernorm1" not in new_name):
new_name = new_name.replace("norm1", "batchnorm_before")
elif ("norm2" in new_name) and ("layernorm2" not in new_name):
new_name = new_name.replace("norm2", "batchnorm_after")
if "proj" in new_name:
new_name = new_name.replace("proj", "projection")
if "dist_head" in new_name:
new_name = new_name.replace("dist_head", "distillation_classifier")
elif "head" in new_name:
new_name = new_name.replace("head", "classifier")
elif "patch_embed" in new_name:
new_name = "efficientformer." + new_name
elif new_name == "norm.weight" or new_name == "norm.bias":
new_name = new_name.replace("norm", "layernorm")
new_name = "efficientformer." + new_name
else:
new_name = "efficientformer.encoder." + new_name
return new_name
def convert_torch_checkpoint(checkpoint, num_meta4D_last_stage):
for key in checkpoint.copy().keys():
val = checkpoint.pop(key)
checkpoint[rename_key(key, num_meta4D_last_stage)] = val
return checkpoint
# We will verify our results on a COCO image
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
return image
def convert_efficientformer_checkpoint(
checkpoint_path: Path, efficientformer_config_file: Path, pytorch_dump_path: Path, push_to_hub: bool
):
orig_state_dict = torch.load(checkpoint_path, map_location="cpu")["model"]
config = EfficientFormerConfig.from_json_file(efficientformer_config_file)
model = EfficientFormerForImageClassificationWithTeacher(config)
model_name = "_".join(checkpoint_path.split("/")[-1].split(".")[0].split("_")[:-1])
num_meta4D_last_stage = config.depths[-1] - config.num_meta3d_blocks + 1
new_state_dict = convert_torch_checkpoint(orig_state_dict, num_meta4D_last_stage)
model.load_state_dict(new_state_dict)
model.eval()
pillow_resamplings = {
"bilinear": PILImageResampling.BILINEAR,
"bicubic": PILImageResampling.BICUBIC,
"nearest": PILImageResampling.NEAREST,
}
# prepare image
image = prepare_img()
image_size = 256
crop_size = 224
processor = EfficientFormerImageProcessor(
size={"shortest_edge": image_size},
crop_size={"height": crop_size, "width": crop_size},
resample=pillow_resamplings["bicubic"],
)
pixel_values = processor(images=image, return_tensors="pt").pixel_values
# original processing pipeline
image_transforms = Compose(
[
Resize(image_size, interpolation=pillow_resamplings["bicubic"]),
CenterCrop(crop_size),
ToTensor(),
Normalize(IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD),
]
)
original_pixel_values = image_transforms(image).unsqueeze(0)
assert torch.allclose(original_pixel_values, pixel_values)
outputs = model(pixel_values)
logits = outputs.logits
expected_shape = (1, 1000)
if "l1" in model_name:
expected_logits = torch.Tensor(
[-0.1312, 0.4353, -1.0499, -0.5124, 0.4183, -0.6793, -1.3777, -0.0893, -0.7358, -2.4328]
)
assert torch.allclose(logits[0, :10], expected_logits, atol=1e-3)
assert logits.shape == expected_shape
elif "l3" in model_name:
expected_logits = torch.Tensor(
[-1.3150, -1.5456, -1.2556, -0.8496, -0.7127, -0.7897, -0.9728, -0.3052, 0.3751, -0.3127]
)
assert torch.allclose(logits[0, :10], expected_logits, atol=1e-3)
assert logits.shape == expected_shape
elif "l7" in model_name:
expected_logits = torch.Tensor(
[-1.0283, -1.4131, -0.5644, -1.3115, -0.5785, -1.2049, -0.7528, 0.1992, -0.3822, -0.0878]
)
assert logits.shape == expected_shape
else:
raise ValueError(
f"Unknown model checkpoint: {checkpoint_path}. Supported version of efficientformer are l1, l3 and l7"
)
# Save Checkpoints
Path(pytorch_dump_path).mkdir(exist_ok=True)
model.save_pretrained(pytorch_dump_path)
print(f"Checkpoint successfuly converted. Model saved at {pytorch_dump_path}")
processor.save_pretrained(pytorch_dump_path)
print(f"Processor successfuly saved at {pytorch_dump_path}")
if push_to_hub:
print("Pushing model to the hub...")
model.push_to_hub(
repo_id=f"Bearnardd/{pytorch_dump_path}",
commit_message="Add model",
use_temp_dir=True,
)
processor.push_to_hub(
repo_id=f"Bearnardd/{pytorch_dump_path}",
commit_message="Add image processor",
use_temp_dir=True,
)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--pytorch_model_path",
default=None,
type=str,
required=True,
help="Path to EfficientFormer pytorch checkpoint.",
)
parser.add_argument(
"--config_file",
default=None,
type=str,
required=True,
help="The json file for EfficientFormer model config.",
)
parser.add_argument(
"--pytorch_dump_path", default=None, type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument("--push_to_hub", action="store_true", help="Push model and image processor to the hub")
parser.add_argument(
"--no-push_to_hub",
dest="push_to_hub",
action="store_false",
help="Do not push model and image processor to the hub",
)
parser.set_defaults(push_to_hub=True)
args = parser.parse_args()
convert_efficientformer_checkpoint(
checkpoint_path=args.pytorch_model_path,
efficientformer_config_file=args.config_file,
pytorch_dump_path=args.pytorch_dump_path,
push_to_hub=args.push_to_hub,
)
| 9,381 | 36.083004 | 114 | py |
transformers | transformers-main/src/transformers/models/vision_text_dual_encoder/modeling_flax_vision_text_dual_encoder.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Flax VisionTextDualEncoder model."""
from typing import Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.traverse_util import flatten_dict, unflatten_dict
from ...modeling_flax_utils import FlaxPreTrainedModel, append_replace_return_docstrings, overwrite_call_docstring
from ...utils import add_start_docstrings, logging
from ..auto.configuration_auto import AutoConfig
from ..auto.modeling_flax_auto import FLAX_MODEL_MAPPING, FlaxAutoModel
from ..clip.modeling_flax_clip import FlaxCLIPOutput, FlaxCLIPVisionModel
from .configuration_vision_text_dual_encoder import VisionTextDualEncoderConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "VisionTextDualEncoderConfig"
VISION_TEXT_DUAL_ENCODER_START_DOCSTRING = r"""
This class can be used to initialize a vision-text dual encoder model with any pretrained vision autoencoding model
as the vision encoder and any pretrained text model as the text encoder. The vision and text encoders are loaded
via the [`~FlaxAutoModel.from_pretrained`] method. The projection layers are automatically added to the model and
should be fine-tuned on a downstream task, like contrastive image-text modeling.
In [LiT: Zero-Shot Transfer with Locked-image Text Tuning](https://arxiv.org/abs/2111.07991) it is shown how
leveraging pre-trained (locked/frozen) image and text model for contrastive learning yields significant improvment
on new zero-shot vision tasks such as image classification or retrieval.
After such a Vision-Text-Dual-Encoder model has been trained/fine-tuned, it can be saved/loaded just like any other
models (see the examples for more information).
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen [flax.linen.Module](https://flax.readthedocs.io/en/latest/flax.linen.html#module)
subclass. Use it as a regular Flax linen Module and refer to the Flax documentation for all matter related to
general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`VisionTextDualEncoderConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
VISION_TEXT_DUAL_ENCODER_INPUTS_DOCSTRING = r"""
Args:
input_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
an image processor (e.g. if you use ViT as the encoder, you should use [`AutoImageProcessor`]). See
[`ViTImageProcessor.__call__`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class FlaxVisionTextDualEncoderModule(nn.Module):
config: VisionTextDualEncoderConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
vision_config = self.config.vision_config
text_config = self.config.text_config
self.vision_embed_dim = vision_config.hidden_size
self.text_embed_dim = text_config.hidden_size
self.projection_dim = self.config.projection_dim
vision_module = FLAX_MODEL_MAPPING.get(self.config.vision_config.__class__, FlaxCLIPVisionModel).module_class
text_module = FLAX_MODEL_MAPPING[self.config.text_config.__class__].module_class
self.vision_model = vision_module(vision_config, dtype=self.dtype)
self.text_model = text_module(text_config, dtype=self.dtype)
self.visual_projection = nn.Dense(
self.projection_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(0.02),
use_bias=False,
)
self.text_projection = nn.Dense(
self.projection_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(0.02),
use_bias=False,
)
self.logit_scale = self.param(
"logit_scale", lambda _, shape: jnp.ones(shape) * self.config.logit_scale_init_value, []
)
def __call__(
self,
input_ids=None,
pixel_values=None,
attention_mask=None,
position_ids=None,
token_type_ids=None,
deterministic: bool = True,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
return_dict = return_dict if return_dict is not None else self.config.return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[1]
image_embeds = self.visual_projection(image_embeds)
text_embeds = text_outputs[1]
text_embeds = self.text_projection(text_embeds)
# normalized features
image_embeds = image_embeds / jnp.linalg.norm(image_embeds, axis=-1, keepdims=True)
text_embeds = text_embeds / jnp.linalg.norm(text_embeds, axis=-1, keepdims=True)
# cosine similarity as logits
logit_scale = jnp.exp(self.logit_scale)
logits_per_text = jnp.matmul(text_embeds, image_embeds.T) * logit_scale
logits_per_image = logits_per_text.T
if not return_dict:
return (logits_per_image, logits_per_text, text_embeds, image_embeds, text_outputs, vision_outputs)
return FlaxCLIPOutput(
logits_per_image=logits_per_image,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
image_embeds=image_embeds,
text_model_output=text_outputs,
vision_model_output=vision_outputs,
)
@add_start_docstrings(VISION_TEXT_DUAL_ENCODER_START_DOCSTRING)
class FlaxVisionTextDualEncoderModel(FlaxPreTrainedModel):
config_class = VisionTextDualEncoderConfig
module_class = FlaxVisionTextDualEncoderModule
def __init__(
self,
config: VisionTextDualEncoderConfig,
input_shape: Optional[Tuple] = None,
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
if not _do_init:
raise ValueError(
"`FlaxVisionTextDualEncoderModel` cannot be created without initializing, `_do_init` must be `True`."
)
if input_shape is None:
input_shape = ((1, 1), (1, config.vision_config.image_size, config.vision_config.image_size, 3))
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensor
input_ids = jnp.zeros(input_shape[0], dtype="i4")
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_shape[0])
token_type_ids = jnp.ones_like(input_ids)
attention_mask = jnp.ones_like(input_ids)
pixel_values = jax.random.normal(rng, input_shape[1])
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
random_params = self.module.init(rngs, input_ids, pixel_values, attention_mask, position_ids, token_type_ids)[
"params"
]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def __call__(
self,
input_ids,
pixel_values,
attention_mask=None,
position_ids=None,
token_type_ids=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
pixel_values = jnp.transpose(pixel_values, (0, 2, 3, 1))
if position_ids is None:
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
if token_type_ids is None:
token_type_ids = jnp.zeros_like(input_ids)
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(pixel_values, dtype=jnp.float32),
jnp.array(attention_mask, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
not train,
output_attentions,
output_hidden_states,
return_dict,
rngs=rngs,
)
def get_text_features(
self,
input_ids,
attention_mask=None,
position_ids=None,
token_type_ids=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train=False,
):
r"""
Args:
input_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using [`PreTrainedTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
Returns:
text_features (`jnp.ndarray` of shape `(batch_size, output_dim`): The text embeddings obtained by applying
the projection layer to the pooled output of text model.
"""
if position_ids is None:
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
if token_type_ids is None:
token_type_ids = jnp.zeros_like(input_ids)
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _get_features(module, input_ids, attention_mask, position_ids, token_type_ids, deterministic):
text_outputs = module.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
token_type_ids=token_type_ids,
deterministic=deterministic,
)
pooled_output = text_outputs[1]
text_features = module.text_projection(pooled_output)
return text_features
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
not train,
method=_get_features,
rngs=rngs,
)
def get_image_features(
self, pixel_values, params: dict = None, dropout_rng: jax.random.PRNGKey = None, train=False
):
r"""
Args:
pixel_values (`numpy.ndarray` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained
using [`ImageFeatureExtractionMixin`]. See [`ImageFeatureExtractionMixin.__call__`] for details.
Returns:
image_features (`jnp.ndarray` of shape `(batch_size, output_dim`): The image embeddings obtained by
applying the projection layer to the pooled output of vision model.
"""
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _get_features(module, pixel_values, deterministic):
vision_outputs = module.vision_model(pixel_values=pixel_values, deterministic=deterministic)
pooled_output = vision_outputs[1] # pooled_output
image_features = module.visual_projection(pooled_output)
return image_features
return self.module.apply(
{"params": params or self.params},
jnp.array(pixel_values, dtype=jnp.float32),
not train,
method=_get_features,
rngs=rngs,
)
@classmethod
def from_vision_text_pretrained(
cls,
vision_model_name_or_path: str = None,
text_model_name_or_path: str = None,
*model_args,
**kwargs,
) -> FlaxPreTrainedModel:
"""
Params:
vision_model_name_or_path (`str`, *optional*, defaults to `None`):
Information necessary to initiate the vision model. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~FlaxPreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *PyTorch checkpoint folder* (e.g, `./pt_model`). In this case, `from_pt`
should be set to `True` and a configuration object should be provided as `config` argument. This
loading path is slower than converting the PyTorch checkpoint in a Flax model using the provided
conversion scripts and loading the Flax model afterwards.
text_model_name_or_path (`str`, *optional*):
Information necessary to initiate the text model. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~FlaxPreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *PyTorch checkpoint folder* (e.g, `./pt_model`). In this case, `from_pt`
should be set to `True` and a configuration object should be provided as `config` argument. This
loading path is slower than converting the PyTorch checkpoint in a Flax model using the provided
conversion scripts and loading the Flax model afterwards.
model_args (remaining positional arguments, *optional*):
All remaning positional arguments will be passed to the underlying model's `__init__` method.
kwargs (remaining dictionary of keyword arguments, *optional*):
Can be used to update the configuration object (after it being loaded) and initiate the model (e.g.,
`output_attentions=True`).
- To update the text configuration, use the prefix *text_* for each configuration parameter.
- To update the vision configuration, use the prefix *vision_* for each configuration parameter.
- To update the parent model configuration, do not use a prefix for each configuration parameter.
Behaves differently depending on whether a `config` is provided or automatically loaded.
Example:
```python
>>> from transformers import FlaxVisionTextDualEncoderModel
>>> # initialize a model from pretrained ViT and BERT models. Note that the projection layers will be randomly initialized.
>>> model = FlaxVisionTextDualEncoderModel.from_vision_text_pretrained(
... "google/vit-base-patch16-224", "bert-base-uncased"
... )
>>> # saving model after fine-tuning
>>> model.save_pretrained("./vit-bert")
>>> # load fine-tuned model
>>> model = FlaxVisionTextDualEncoderModel.from_pretrained("./vit-bert")
```"""
kwargs_vision = {
argument[len("vision_") :]: value for argument, value in kwargs.items() if argument.startswith("vision_")
}
kwargs_text = {
argument[len("text_") :]: value for argument, value in kwargs.items() if argument.startswith("text_")
}
# remove text, vision kwargs from kwargs
for key in kwargs_vision.keys():
del kwargs["vision_" + key]
for key in kwargs_text.keys():
del kwargs["text_" + key]
# Load and initialize the text and vision model
vision_model = kwargs_vision.pop("model", None)
if vision_model is None:
if vision_model_name_or_path is None:
raise ValueError(
"If `vision_model` is not defined as an argument, a `vision_model_name_or_path` has to be defined"
)
if "config" not in kwargs_vision:
vision_config = AutoConfig.from_pretrained(vision_model_name_or_path)
if vision_config.model_type == "clip":
kwargs_vision["config"] = vision_config.vision_config
vision_model = FlaxCLIPVisionModel.from_pretrained(
vision_model_name_or_path, *model_args, **kwargs_vision
)
else:
kwargs_vision["config"] = vision_config
vision_model = FlaxAutoModel.from_pretrained(vision_model_name_or_path, *model_args, **kwargs_vision)
text_model = kwargs_text.pop("model", None)
if text_model is None:
if text_model_name_or_path is None:
raise ValueError(
"If `text_model` is not defined as an argument, a `text_model_name_or_path` has to be defined"
)
if "config" not in kwargs_text:
text_config = AutoConfig.from_pretrained(text_model_name_or_path)
kwargs_text["config"] = text_config
text_model = FlaxAutoModel.from_pretrained(text_model_name_or_path, *model_args, **kwargs_text)
# instantiate config with corresponding kwargs
dtype = kwargs.pop("dtype", jnp.float32)
config = VisionTextDualEncoderConfig.from_vision_text_configs(vision_model.config, text_model.config, **kwargs)
# init model
model = cls(config, *model_args, dtype=dtype, **kwargs)
model.params["vision_model"] = vision_model.params
model.params["text_model"] = text_model.params
# the projection layers are always newly initialized when loading the model
# using pre-trained vision and text model.
logger.warning(
"The projection layer and logit scale weights `[('visual_projection', 'kernel'), ('text_projection',"
" 'kernel'), ('logit_scale',)]` are newly initialized. You should probably TRAIN this model on a"
" down-stream task to be able to use it for predictions and inference."
)
return model
VISION_TEXT_DUAL_ENCODER_MODEL_DOCSTRING = r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> import jax
>>> from transformers import (
... FlaxVisionTextDualEncoderModel,
... VisionTextDualEncoderProcessor,
... AutoImageProcessor,
... AutoTokenizer,
... )
>>> tokenizer = AutoTokenizer.from_pretrained("bert-base-uncased")
>>> image_processor = AutoImageProcesor.from_pretrained("google/vit-base-patch16-224")
>>> processor = VisionTextDualEncoderProcessor(image_processor, tokenizer)
>>> model = FlaxVisionTextDualEncoderModel.from_vision_text_pretrained(
... "google/vit-base-patch16-224", "bert-base-uncased"
... )
>>> # contrastive training
>>> urls = [
... "http://images.cocodataset.org/val2017/000000039769.jpg",
... "https://farm3.staticflickr.com/2674/5850229113_4fe05d5265_z.jpg",
... ]
>>> images = [Image.open(requests.get(url, stream=True).raw) for url in urls]
>>> inputs = processor(
... text=["a photo of a cat", "a photo of a dog"], images=images, return_tensors="np", padding=True
... )
>>> outputs = model(
... input_ids=inputs.input_ids,
... attention_mask=inputs.attention_mask,
... pixel_values=inputs.pixel_values,
... )
>>> logits_per_image = outputs.logits_per_image # this is the image-text similarity score
>>> # save and load from pretrained
>>> model.save_pretrained("vit-bert")
>>> model = FlaxVisionTextDualEncoderModel.from_pretrained("vit-bert")
>>> # inference
>>> outputs = model(**inputs)
>>> logits_per_image = outputs.logits_per_image # this is the image-text similarity score
>>> probs = jax.nn.softmax(logits_per_image, axis=1) # we can take the softmax to get the label probabilities
```
"""
overwrite_call_docstring(
FlaxVisionTextDualEncoderModel,
VISION_TEXT_DUAL_ENCODER_INPUTS_DOCSTRING + VISION_TEXT_DUAL_ENCODER_MODEL_DOCSTRING,
)
append_replace_return_docstrings(
FlaxVisionTextDualEncoderModel, output_type=FlaxCLIPOutput, config_class=_CONFIG_FOR_DOC
)
| 26,682 | 43.250415 | 131 | py |
transformers | transformers-main/src/transformers/models/vision_text_dual_encoder/modeling_tf_vision_text_dual_encoder.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""TensorFlow VisionTextDualEncoder model."""
from __future__ import annotations
import re
from typing import Optional, Tuple, Union
import tensorflow as tf
from tensorflow.keras.layers import Dense
from ...configuration_utils import PretrainedConfig
from ...modeling_tf_utils import TFPreTrainedModel, unpack_inputs
from ...tf_utils import shape_list
from ...utils import (
DUMMY_INPUTS,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from ..auto.configuration_auto import AutoConfig
from ..auto.modeling_tf_auto import TFAutoModel
from ..clip.modeling_tf_clip import CLIPVisionConfig, TFCLIPOutput, TFCLIPVisionModel
from .configuration_vision_text_dual_encoder import VisionTextDualEncoderConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "VisionTextDualEncoderConfig"
VISION_TEXT_DUAL_ENCODER_START_DOCSTRING = r"""
This class can be used to initialize a vision-text dual encoder model with any pretrained vision autoencoding model
as the vision encoder and any pretrained text model as the text encoder. The vision and text encoders are loaded
via the [`~TFAutoModel.from_pretrained`] method. The projection layers are automatically added to the model and
should be fine-tuned on a downstream task, like contrastive image-text modeling.
In [LiT: Zero-Shot Transfer with Locked-image Text Tuning](https://arxiv.org/abs/2111.07991) it is shown how
leveraging pre-trained (locked/frozen) image and text model for contrastive learning yields significant improvment
on new zero-shot vision tasks such as image classification or retrieval.
After such a Vision-Text-Dual-Encoder model has been trained/fine-tuned, it can be saved/loaded just like any other
models (see the examples for more information).
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Keras [Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it as a
regular Keras Model and refer to the TF documentation for all matter related to general usage and behavior.
Parameters:
config ([`VisionEncoderDecoderConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
VISION_TEXT_DUAL_ENCODER_TEXT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`PreTrainedTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
VISION_TEXT_DUAL_ENCODER_VISION_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
[`AutoImageProcessor`]. See [`CLIPImageProcessor.__call__`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
VISION_TEXT_DUAL_ENCODER_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
an image processor (e.g. if you use ViT as the encoder, you should use [`AutoImageProcessor`]). See
[`ViTImageProcessor.__call__`] for details.
return_loss (`bool`, *optional*):
Whether or not to return the contrastive loss.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.clip.modeling_tf_clip.contrastive_loss
def contrastive_loss(logits: tf.Tensor) -> tf.Tensor:
return tf.math.reduce_mean(
tf.keras.metrics.sparse_categorical_crossentropy(
y_true=tf.range(shape_list(logits)[0]), y_pred=logits, from_logits=True
)
)
# Copied from transformers.models.clip.modeling_tf_clip.clip_loss
def clip_loss(similarity: tf.Tensor) -> tf.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(tf.transpose(similarity))
return (caption_loss + image_loss) / 2.0
@add_start_docstrings(VISION_TEXT_DUAL_ENCODER_START_DOCSTRING)
class TFVisionTextDualEncoderModel(TFPreTrainedModel):
config_class = VisionTextDualEncoderConfig
base_model_prefix = "vision_text_dual_encoder"
load_weight_prefix = "tf_vision_text_dual_encoder_model"
def __init__(
self,
config: Optional[VisionTextDualEncoderConfig] = None,
vision_model: Optional[TFPreTrainedModel] = None,
text_model: Optional[TFPreTrainedModel] = None,
):
if config is None and (vision_model is None or text_model is None):
raise ValueError("Either a configuration or an vision and a text model has to be provided")
if config is None:
config = VisionTextDualEncoderConfig.from_vision_text_configs(vision_model.config, text_model.config)
else:
if not isinstance(config, self.config_class):
raise ValueError(f"config: {config} has to be of type {self.config_class}")
# initialize with config
super().__init__(config)
if vision_model is None:
if isinstance(config.vision_config, CLIPVisionConfig):
vision_model = TFCLIPVisionModel.from_config(config.vision_config, name="vision_model")
else:
vision_model = TFAutoModel.from_config(config.vision_config, name="vision_model")
if text_model is None:
text_model = TFAutoModel.from_config(config.text_config, name="text_model")
self.vision_model = vision_model
self.text_model = text_model
# make sure that the individual model's config refers to the shared config
# so that the updates to the config will be synced
self.vision_model.config = self.config.vision_config
self.text_model.config = self.config.text_config
self.vision_embed_dim = config.vision_config.hidden_size
self.text_embed_dim = config.text_config.hidden_size
self.projection_dim = config.projection_dim
self.visual_projection = Dense(self.projection_dim, use_bias=False, name="visual_projection")
self.text_projection = Dense(self.projection_dim, use_bias=False, name="text_projection")
self.logit_scale = None
def build(self, input_shape=None):
# Build in the build() method to make sure the names are right
initializer = tf.keras.initializers.Constant(self.config.logit_scale_init_value)
self.logit_scale = self.add_weight(shape=(1,), initializer=initializer, name="logit_scale")
super().build(input_shape)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
# Matt: The TF and PT weights don't align because our TF base classes have an extra layer compared to PT models
# (the main model stem is in the MainLayer class). If we remove that layer, then weight names sync up as normal.
# However, the name of that extra layer is the name of the MainLayer in the base model.
if kwargs.get("from_pt", False):
def tf_to_pt_weight_rename(tf_weight):
if "vision_model" in tf_weight:
if tf_weight.count("vision_model") == 1:
return re.sub(r"vision_model\..*?\.", "vision_model.", tf_weight)
elif tf_weight.count("vision_model") == 2:
return re.sub(r"vision_model\..*?\.vision_model", "vision_model.vision_model", tf_weight)
else:
raise ValueError(
f"Unexpected weight name {tf_weight}. Please file an issue on the"
" Transformers repo to let us know about this error!"
)
elif "text_model" in tf_weight:
return re.sub(r"text_model\..*?\.", "text_model.", tf_weight)
else:
return tf_weight
kwargs["tf_to_pt_weight_rename"] = tf_to_pt_weight_rename
return super().from_pretrained(pretrained_model_name_or_path, *model_args, **kwargs)
@add_start_docstrings_to_model_forward(VISION_TEXT_DUAL_ENCODER_TEXT_INPUTS_DOCSTRING)
def get_text_features(
self,
input_ids=None,
attention_mask=None,
position_ids=None,
token_type_ids=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Returns:
text_features (`tf.Tensor` of shape `(batch_size, output_dim`): The text embeddings obtained by applying
the projection layer to the pooled output of [`TFCLIPTextModel`].
Examples:
```python
>>> from transformers import TFVisionTextDualEncoderModel, AutoTokenizer
>>> model = TFVisionTextDualEncoderModel.from_pretrained("clip-italian/clip-italian", from_pt=True)
>>> tokenizer = AutoTokenizer.from_pretrained("clip-italian/clip-italian")
>>> inputs = tokenizer(["una foto di un gatto", "una foto di un cane"], padding=True, return_tensors="np")
>>> text_features = model.get_text_features(**inputs)
```"""
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
token_type_ids=token_type_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = text_outputs[1]
text_features = self.text_projection(pooled_output)
return text_features
@add_start_docstrings_to_model_forward(VISION_TEXT_DUAL_ENCODER_VISION_INPUTS_DOCSTRING)
def get_image_features(
self,
pixel_values=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Returns:
image_features (`tf.Tensor` of shape `(batch_size, output_dim`): The image embeddings obtained by applying
the projection layer to the pooled output of [`TFCLIPVisionModel`].
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import TFVisionTextDualEncoderModel, AutoImageProcessor
>>> model = TFVisionTextDualEncoderModel.from_pretrained("clip-italian/clip-italian", from_pt=True)
>>> image_processor = AutoImageProcessor.from_pretrained("google/vit-base-patch16-224")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = image_processor(images=image, return_tensors="np")
>>> image_features = model.get_image_features(**inputs)
```"""
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = vision_outputs[1] # pooled_output
image_features = self.visual_projection(pooled_output)
return image_features
@unpack_inputs
@add_start_docstrings_to_model_forward(VISION_TEXT_DUAL_ENCODER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFCLIPOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: tf.Tensor | None = None,
pixel_values: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
return_loss: Optional[bool] = None,
token_type_ids: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[Tuple[tf.Tensor], TFCLIPOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import (
... TFVisionTextDualEncoderModel,
... VisionTextDualEncoderProcessor,
... AutoImageProcessor,
... AutoTokenizer,
... )
>>> tokenizer = AutoTokenizer.from_pretrained("bert-base-uncased")
>>> image_processor = AutoImageProcessor.from_pretrained("google/vit-base-patch16-224")
>>> processor = VisionTextDualEncoderProcessor(image_processor, tokenizer)
>>> model = TFVisionTextDualEncoderModel.from_vision_text_pretrained(
... "google/vit-base-patch16-224", "bert-base-uncased"
... )
>>> # contrastive training
>>> urls = [
... "http://images.cocodataset.org/val2017/000000039769.jpg",
... "https://farm3.staticflickr.com/2674/5850229113_4fe05d5265_z.jpg",
... ]
>>> images = [Image.open(requests.get(url, stream=True).raw) for url in urls]
>>> inputs = processor(
... text=["a photo of a cat", "a photo of a dog"], images=images, return_tensors="np", padding=True
... )
>>> outputs = model(
... input_ids=inputs.input_ids,
... attention_mask=inputs.attention_mask,
... pixel_values=inputs.pixel_values,
... return_loss=True,
... )
>>> loss, logits_per_image = outputs.loss, outputs.logits_per_image # this is the image-text similarity score
>>> # save and load from pretrained
>>> model.save_pretrained("vit-bert")
>>> model = TFVisionTextDualEncoderModel.from_pretrained("vit-bert")
>>> # inference
>>> outputs = model(**inputs)
>>> logits_per_image = outputs.logits_per_image # this is the image-text similarity score
>>> probs = tf.nn.softmax(logits_per_image, axis=1) # we can take the softmax to get the label probabilities
```"""
return_dict = return_dict if return_dict is not None else self.config.return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
image_embeds = vision_outputs[1] # pooler_output
image_embeds = self.visual_projection(image_embeds)
text_embeds = text_outputs[1] # pooler_output
text_embeds = self.text_projection(text_embeds)
# normalized features
image_embeds = image_embeds / tf.norm(image_embeds, axis=-1, keepdims=True)
text_embeds = text_embeds / tf.norm(text_embeds, axis=-1, keepdims=True)
# cosine similarity as logits
logit_scale = tf.math.exp(self.logit_scale)
logits_per_text = tf.matmul(text_embeds, image_embeds, transpose_b=True) * logit_scale
logits_per_image = tf.transpose(logits_per_text)
loss = None
if return_loss:
loss = clip_loss(logits_per_text)
if loss.shape.rank == 0:
loss = tf.expand_dims(loss, 0)
if not return_dict:
output = (logits_per_image, logits_per_text, text_embeds, image_embeds, text_outputs, vision_outputs)
return ((loss,) + output) if loss is not None else output
return TFCLIPOutput(
loss=loss,
logits_per_image=logits_per_image,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
image_embeds=image_embeds,
text_model_output=text_outputs,
vision_model_output=vision_outputs,
)
@classmethod
def from_vision_text_pretrained(
cls,
vision_model_name_or_path: str = None,
text_model_name_or_path: str = None,
*model_args,
**kwargs,
) -> TFPreTrainedModel:
"""
Params:
vision_model_name_or_path (`str`, *optional*, defaults to `None`):
Information necessary to initiate the vision model. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~TFPreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *PyTorch checkpoint folder* (e.g, `./pt_model`). In this case, `from_pt`
should be set to `True` and a configuration object should be provided as `config` argument.
text_model_name_or_path (`str`, *optional*):
Information necessary to initiate the text model. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~TFPreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *PyTorch checkpoint folder* (e.g, `./pt_model`). In this case, `from_pt`
should be set to `True` and a configuration object should be provided as `config` argument.
model_args (remaining positional arguments, *optional*):
All remaning positional arguments will be passed to the underlying model's `__init__` method.
kwargs (remaining dictionary of keyword arguments, *optional*):
Can be used to update the configuration object (after it being loaded) and initiate the model (e.g.,
`output_attentions=True`).
- To update the text configuration, use the prefix *text_* for each configuration parameter.
- To update the vision configuration, use the prefix *vision_* for each configuration parameter.
- To update the parent model configuration, do not use a prefix for each configuration parameter.
Behaves differently depending on whether a `config` is provided or automatically loaded.
Example:
```python
>>> from transformers import TFVisionTextDualEncoderModel
>>> # initialize a model from pretrained ViT and BERT models. Note that the projection layers will be randomly initialized.
>>> model = TFVisionTextDualEncoderModel.from_vision_text_pretrained(
... "google/vit-base-patch16-224", "bert-base-uncased"
... )
>>> # saving model after fine-tuning
>>> model.save_pretrained("./vit-bert")
>>> # load fine-tuned model
>>> model = TFVisionTextDualEncoderModel.from_pretrained("./vit-bert")
```"""
kwargs_vision = {
argument[len("vision_") :]: value for argument, value in kwargs.items() if argument.startswith("vision_")
}
kwargs_text = {
argument[len("text_") :]: value for argument, value in kwargs.items() if argument.startswith("text_")
}
# remove vision, text kwargs from kwargs
for key in kwargs_vision.keys():
del kwargs["vision_" + key]
for key in kwargs_text.keys():
del kwargs["text_" + key]
# Load and initialize the vision and text model
vision_model = kwargs_vision.pop("model", None)
if vision_model is None:
if vision_model_name_or_path is None:
raise ValueError(
"If `vision_model` is not defined as an argument, a `vision_model_name_or_path` has to be defined"
)
kwargs_vision["name"] = "vision_model"
kwargs_vision["load_weight_prefix"] = cls.load_weight_prefix
vision_config_dict, unused_args = PretrainedConfig.get_config_dict(vision_model_name_or_path, **kwargs)
if vision_config_dict.get("model_type", None) == "clip_vision_model":
vision_config = CLIPVisionConfig.from_dict(vision_config_dict)
else:
vision_config = AutoConfig.from_pretrained(vision_model_name_or_path)
if vision_config.model_type == "clip_vision_model":
kwargs_vision["config"] = vision_config
vision_class = TFCLIPVisionModel
elif vision_config.model_type == "clip":
kwargs_vision["config"] = vision_config.vision_config
vision_class = TFCLIPVisionModel
else:
kwargs_vision["config"] = vision_config
vision_class = TFAutoModel
vision_model = vision_class.from_pretrained(vision_model_name_or_path, *model_args, **kwargs_vision)
text_model = kwargs_text.pop("model", None)
if text_model is None:
if text_model_name_or_path is None:
raise ValueError(
"If `text_model` is not defined as an argument, a `text_model_name_or_path` has to be defined"
)
kwargs_text["name"] = "text_model"
kwargs_text["load_weight_prefix"] = cls.load_weight_prefix
if "config" not in kwargs_text:
text_config = AutoConfig.from_pretrained(text_model_name_or_path)
kwargs_text["config"] = text_config
text_model = TFAutoModel.from_pretrained(text_model_name_or_path, *model_args, **kwargs_text)
# instantiate config with corresponding kwargs
config = VisionTextDualEncoderConfig.from_vision_text_configs(vision_model.config, text_model.config, **kwargs)
# init model
model = cls(config=config, vision_model=vision_model, text_model=text_model)
# the projection layers are always newly initialized when loading the model
# using pre-trained vision and text model.
logger.warning(
"The projection layer and logit scale weights `['visual_projection.weight', 'text_projection.weight',"
" 'logit_scale']` are newly initialized. You should probably TRAIN this model on a down-stream task to be"
" able to use it for predictions and inference."
)
if vision_model.name != "vision_model":
raise ValueError("vision model must be created with the name `vision_model`.")
if text_model.name != "text_model":
raise ValueError("text model must be created with the name `text_model`.")
model.build() # Ensure model is fully built
return model
@property
def dummy_inputs(self):
"""
Dummy inputs to build the network.
Returns:
`Dict[str, tf.Tensor]`: The dummy inputs.
"""
input_ids = tf.constant(DUMMY_INPUTS, dtype=tf.int32)
batch_size, seq_len = input_ids.shape
VISION_DUMMY_INPUTS = tf.random.uniform(
shape=(
batch_size,
self.config.vision_config.num_channels,
self.config.vision_config.image_size,
self.config.vision_config.image_size,
),
dtype=tf.float32,
)
pixel_values = tf.constant(VISION_DUMMY_INPUTS)
dummy = {"pixel_values": pixel_values, "input_ids": input_ids}
return dummy
| 28,773 | 45.26045 | 131 | py |
transformers | transformers-main/src/transformers/models/vision_text_dual_encoder/processing_vision_text_dual_encoder.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for VisionTextDualEncoder
"""
import warnings
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import BatchEncoding
class VisionTextDualEncoderProcessor(ProcessorMixin):
r"""
Constructs a VisionTextDualEncoder processor which wraps an image processor and a tokenizer into a single
processor.
[`VisionTextDualEncoderProcessor`] offers all the functionalities of [`AutoImageProcessor`] and [`AutoTokenizer`].
See the [`~VisionTextDualEncoderProcessor.__call__`] and [`~VisionTextDualEncoderProcessor.decode`] for more
information.
Args:
image_processor ([`AutoImageProcessor`]):
The image processor is a required input.
tokenizer ([`PreTrainedTokenizer`]):
The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "AutoImageProcessor"
tokenizer_class = "AutoTokenizer"
def __init__(self, image_processor=None, tokenizer=None, **kwargs):
feature_extractor = None
if "feature_extractor" in kwargs:
warnings.warn(
"The `feature_extractor` argument is deprecated and will be removed in v5, use `image_processor`"
" instead.",
FutureWarning,
)
feature_extractor = kwargs.pop("feature_extractor")
image_processor = image_processor if image_processor is not None else feature_extractor
if image_processor is None:
raise ValueError("You have to specify an image_processor.")
if tokenizer is None:
raise ValueError("You have to specify a tokenizer.")
super().__init__(image_processor, tokenizer)
self.current_processor = self.image_processor
def __call__(self, text=None, images=None, return_tensors=None, **kwargs):
"""
Main method to prepare for the model one or several sequences(s) and image(s). This method forwards the `text`
and `kwargs` arguments to VisionTextDualEncoderTokenizer's [`~PreTrainedTokenizer.__call__`] if `text` is not
`None` to encode the text. To prepare the image(s), this method forwards the `images` and `kwrags` arguments to
AutoImageProcessor's [`~AutoImageProcessor.__call__`] if `images` is not `None`. Please refer to the doctsring
of the above two methods for more information.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence can be a string or a list of strings
(pretokenized string). If the sequences are provided as list of strings (pretokenized), you must set
`is_split_into_words=True` (to lift the ambiguity with a batch of sequences).
images (`PIL.Image.Image`, `np.ndarray`, `torch.Tensor`, `List[PIL.Image.Image]`, `List[np.ndarray]`, `List[torch.Tensor]`):
The image or batch of images to be prepared. Each image can be a PIL image, NumPy array or PyTorch
tensor. In case of a NumPy array/PyTorch tensor, each image should be of shape (C, H, W), where C is a
number of channels, H and W are image height and width.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors of a particular framework. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return NumPy `np.ndarray` objects.
- `'jax'`: Return JAX `jnp.ndarray` objects.
Returns:
[`BatchEncoding`]: A [`BatchEncoding`] with the following fields:
- **input_ids** -- List of token ids to be fed to a model. Returned when `text` is not `None`.
- **attention_mask** -- List of indices specifying which tokens should be attended to by the model (when
`return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names` and if `text` is not
`None`).
- **pixel_values** -- Pixel values to be fed to a model. Returned when `images` is not `None`.
"""
if text is None and images is None:
raise ValueError("You have to specify either text or images. Both cannot be none.")
if text is not None:
encoding = self.tokenizer(text, return_tensors=return_tensors, **kwargs)
if images is not None:
image_features = self.image_processor(images, return_tensors=return_tensors, **kwargs)
if text is not None and images is not None:
encoding["pixel_values"] = image_features.pixel_values
return encoding
elif text is not None:
return encoding
else:
return BatchEncoding(data=dict(**image_features), tensor_type=return_tensors)
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to VisionTextDualEncoderTokenizer's
[`~PreTrainedTokenizer.batch_decode`]. Please refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to VisionTextDualEncoderTokenizer's [`~PreTrainedTokenizer.decode`].
Please refer to the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@property
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + image_processor_input_names))
@property
def feature_extractor_class(self):
warnings.warn(
"`feature_extractor_class` is deprecated and will be removed in v5. Use `image_processor_class` instead.",
FutureWarning,
)
return self.image_processor_class
@property
def feature_extractor(self):
warnings.warn(
"`feature_extractor` is deprecated and will be removed in v5. Use `image_processor` instead.",
FutureWarning,
)
return self.image_processor
| 7,010 | 45.430464 | 136 | py |
transformers | transformers-main/src/transformers/models/vision_text_dual_encoder/configuration_vision_text_dual_encoder.py | # coding=utf-8
# Copyright The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" VisionTextDualEncoder model configuration"""
import copy
from ...configuration_utils import PretrainedConfig
from ...utils import logging
from ..auto.configuration_auto import AutoConfig
from ..clip.configuration_clip import CLIPVisionConfig
logger = logging.get_logger(__name__)
class VisionTextDualEncoderConfig(PretrainedConfig):
r"""
[`VisionTextDualEncoderConfig`] is the configuration class to store the configuration of a
[`VisionTextDualEncoderModel`]. It is used to instantiate [`VisionTextDualEncoderModel`] model according to the
specified arguments, defining the text model and vision model configs.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
text_config (`dict`):
Dictionary of configuration options that defines text model config.
vision_config (`dict`):
Dictionary of configuration options that defines vison model config.
projection_dim (`int`, *optional*, defaults to 512):
Dimentionality of text and vision projection layers.
logit_scale_init_value (`float`, *optional*, defaults to 2.6592):
The inital value of the *logit_scale* paramter. Default is used as per the original CLIP implementation.
kwargs (*optional*):
Dictionary of keyword arguments.
Examples:
```python
>>> from transformers import ViTConfig, BertConfig, VisionTextDualEncoderConfig, VisionTextDualEncoderModel
>>> # Initializing a BERT and ViT configuration
>>> config_vision = ViTConfig()
>>> config_text = BertConfig()
>>> config = VisionTextDualEncoderConfig.from_vision_text_configs(config_vision, config_text, projection_dim=512)
>>> # Initializing a BERT and ViT model (with random weights)
>>> model = VisionTextDualEncoderModel(config=config)
>>> # Accessing the model configuration
>>> config_vision = model.config.vision_config
>>> config_text = model.config.text_config
>>> # Saving the model, including its configuration
>>> model.save_pretrained("vit-bert")
>>> # loading model and config from pretrained folder
>>> vision_text_config = VisionTextDualEncoderConfig.from_pretrained("vit-bert")
>>> model = VisionTextDualEncoderModel.from_pretrained("vit-bert", config=vision_text_config)
```"""
model_type = "vision-text-dual-encoder"
is_composition = True
def __init__(self, projection_dim=512, logit_scale_init_value=2.6592, **kwargs):
super().__init__(**kwargs)
if "vision_config" not in kwargs:
raise ValueError("`vision_config` can not be `None`.")
if "text_config" not in kwargs:
raise ValueError("`text_config` can not be `None`.")
vision_config = kwargs.pop("vision_config")
text_config = kwargs.pop("text_config")
vision_model_type = vision_config.pop("model_type")
text_model_type = text_config.pop("model_type")
if vision_model_type == "clip":
self.vision_config = AutoConfig.for_model(vision_model_type, **vision_config).vision_config
elif vision_model_type == "clip_vision_model":
self.vision_config = CLIPVisionConfig(**vision_config)
else:
self.vision_config = AutoConfig.for_model(vision_model_type, **vision_config)
self.text_config = AutoConfig.for_model(text_model_type, **text_config)
self.projection_dim = projection_dim
self.logit_scale_init_value = logit_scale_init_value
@classmethod
def from_vision_text_configs(cls, vision_config: PretrainedConfig, text_config: PretrainedConfig, **kwargs):
r"""
Instantiate a [`VisionTextDualEncoderConfig`] (or a derived class) from text model configuration and vision
model configuration.
Returns:
[`VisionTextDualEncoderConfig`]: An instance of a configuration object
"""
return cls(vision_config=vision_config.to_dict(), text_config=text_config.to_dict(), **kwargs)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
output["vision_config"] = self.vision_config.to_dict()
output["text_config"] = self.text_config.to_dict()
output["model_type"] = self.__class__.model_type
return output
| 5,289 | 40.007752 | 117 | py |
transformers | transformers-main/src/transformers/models/vision_text_dual_encoder/__init__.py | # Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_torch_available,
)
_import_structure = {
"configuration_vision_text_dual_encoder": ["VisionTextDualEncoderConfig"],
"processing_vision_text_dual_encoder": ["VisionTextDualEncoderProcessor"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_vision_text_dual_encoder"] = ["VisionTextDualEncoderModel"]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_vision_text_dual_encoder"] = ["FlaxVisionTextDualEncoderModel"]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_vision_text_dual_encoder"] = ["TFVisionTextDualEncoderModel"]
if TYPE_CHECKING:
from .configuration_vision_text_dual_encoder import VisionTextDualEncoderConfig
from .processing_vision_text_dual_encoder import VisionTextDualEncoderProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_vision_text_dual_encoder import VisionTextDualEncoderModel
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_vision_text_dual_encoder import FlaxVisionTextDualEncoderModel
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_vision_text_dual_encoder import TFVisionTextDualEncoderModel
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 2,730 | 29.344444 | 100 | py |
transformers | transformers-main/src/transformers/models/vision_text_dual_encoder/modeling_vision_text_dual_encoder.py | # coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch VisionTextDualEncoder model."""
from typing import Optional, Tuple, Union
import torch
from torch import nn
from ...modeling_utils import PreTrainedModel
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from ..auto.configuration_auto import AutoConfig
from ..auto.modeling_auto import AutoModel
from ..clip.modeling_clip import CLIPOutput, CLIPVisionConfig, CLIPVisionModel
from .configuration_vision_text_dual_encoder import VisionTextDualEncoderConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "VisionTextDualEncoderConfig"
VISION_TEXT_DUAL_ENCODER_START_DOCSTRING = r"""
This class can be used to initialize a vision-text dual encoder model with any pretrained vision autoencoding model
as the vision encoder and any pretrained text model as the text encoder. The vision and text encoders are loaded
via the [`~AutoModel.from_pretrained`] method. The projection layers are automatically added to the model and
should be fine-tuned on a downstream task, like contrastive image-text modeling.
In [LiT: Zero-Shot Transfer with Locked-image Text Tuning](https://arxiv.org/abs/2111.07991) it is shown how
leveraging pre-trained (locked/frozen) image and text model for contrastive learning yields significant improvment
on new zero-shot vision tasks such as image classification or retrieval.
After such a Vision-Text-Dual-Encoder model has been trained/fine-tuned, it can be saved/loaded just like any other
models (see the examples for more information).
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`VisionEncoderDecoderConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
VISION_TEXT_DUAL_ENCODER_TEXT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`PreTrainedTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
VISION_TEXT_DUAL_ENCODER_VISION_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
[`AutoImageProcessor`]. See [`CLIPImageProcessor.__call__`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
VISION_TEXT_DUAL_ENCODER_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
an image processor (e.g. if you use ViT as the encoder, you should use [`AutoImageProcessor`]). See
[`ViTImageProcessor.__call__`] for details.
return_loss (`bool`, *optional*):
Whether or not to return the contrastive loss.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.clip.modeling_clip.contrastive_loss
def contrastive_loss(logits: torch.Tensor) -> torch.Tensor:
return nn.functional.cross_entropy(logits, torch.arange(len(logits), device=logits.device))
# Copied from transformers.models.clip.modeling_clip.clip_loss
def clip_loss(similarity: torch.Tensor) -> torch.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(similarity.t())
return (caption_loss + image_loss) / 2.0
@add_start_docstrings(VISION_TEXT_DUAL_ENCODER_START_DOCSTRING)
class VisionTextDualEncoderModel(PreTrainedModel):
config_class = VisionTextDualEncoderConfig
base_model_prefix = "vision_text_dual_encoder"
def __init__(
self,
config: Optional[VisionTextDualEncoderConfig] = None,
vision_model: Optional[PreTrainedModel] = None,
text_model: Optional[PreTrainedModel] = None,
):
if config is None and (vision_model is None or text_model is None):
raise ValueError("Either a configuration or an vision and a text model has to be provided")
if config is None:
config = VisionTextDualEncoderConfig.from_vision_text_configs(vision_model.config, text_model.config)
else:
if not isinstance(config, self.config_class):
raise ValueError(f"config: {config} has to be of type {self.config_class}")
# initialize with config
super().__init__(config)
if vision_model is None:
if isinstance(config.vision_config, CLIPVisionConfig):
vision_model = CLIPVisionModel(config.vision_config)
else:
vision_model = AutoModel.from_config(config.vision_config)
if text_model is None:
text_model = AutoModel.from_config(config.text_config)
self.vision_model = vision_model
self.text_model = text_model
# make sure that the individual model's config refers to the shared config
# so that the updates to the config will be synced
self.vision_model.config = self.config.vision_config
self.text_model.config = self.config.text_config
self.vision_embed_dim = config.vision_config.hidden_size
self.text_embed_dim = config.text_config.hidden_size
self.projection_dim = config.projection_dim
self.visual_projection = nn.Linear(self.vision_embed_dim, self.projection_dim, bias=False)
self.text_projection = nn.Linear(self.text_embed_dim, self.projection_dim, bias=False)
self.logit_scale = nn.Parameter(torch.tensor(self.config.logit_scale_init_value))
@add_start_docstrings_to_model_forward(VISION_TEXT_DUAL_ENCODER_TEXT_INPUTS_DOCSTRING)
def get_text_features(
self,
input_ids=None,
attention_mask=None,
position_ids=None,
token_type_ids=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Returns:
text_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The text embeddings obtained by
applying the projection layer to the pooled output of [`CLIPTextModel`].
Examples:
```python
>>> from transformers import VisionTextDualEncoderModel, AutoTokenizer
>>> model = VisionTextDualEncoderModel.from_pretrained("clip-italian/clip-italian")
>>> tokenizer = AutoTokenizer.from_pretrained("clip-italian/clip-italian")
>>> inputs = tokenizer(["una foto di un gatto", "una foto di un cane"], padding=True, return_tensors="pt")
>>> text_features = model.get_text_features(**inputs)
```"""
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
token_type_ids=token_type_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = text_outputs[1]
text_features = self.text_projection(pooled_output)
return text_features
@add_start_docstrings_to_model_forward(VISION_TEXT_DUAL_ENCODER_VISION_INPUTS_DOCSTRING)
def get_image_features(
self,
pixel_values=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Returns:
image_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The image embeddings obtained by
applying the projection layer to the pooled output of [`CLIPVisionModel`].
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import VisionTextDualEncoderModel, AutoImageProcessor
>>> model = VisionTextDualEncoderModel.from_pretrained("clip-italian/clip-italian")
>>> image_processor = AutoImageProcessor.from_pretrained("google/vit-base-patch16-224")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> image_features = model.get_image_features(**inputs)
```"""
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = vision_outputs[1] # pooled_output
image_features = self.visual_projection(pooled_output)
return image_features
@add_start_docstrings_to_model_forward(VISION_TEXT_DUAL_ENCODER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=CLIPOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
return_loss: Optional[bool] = None,
token_type_ids: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], CLIPOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import (
... VisionTextDualEncoderModel,
... VisionTextDualEncoderProcessor,
... AutoImageProcessor,
... AutoTokenizer,
... )
>>> tokenizer = AutoTokenizer.from_pretrained("bert-base-uncased")
>>> image_processor = AutoImageProcessor.from_pretrained("google/vit-base-patch16-224")
>>> processor = VisionTextDualEncoderProcessor(image_processor, tokenizer)
>>> model = VisionTextDualEncoderModel.from_vision_text_pretrained(
... "google/vit-base-patch16-224", "bert-base-uncased"
... )
>>> # contrastive training
>>> urls = [
... "http://images.cocodataset.org/val2017/000000039769.jpg",
... "https://farm3.staticflickr.com/2674/5850229113_4fe05d5265_z.jpg",
... ]
>>> images = [Image.open(requests.get(url, stream=True).raw) for url in urls]
>>> inputs = processor(
... text=["a photo of a cat", "a photo of a dog"], images=images, return_tensors="pt", padding=True
... )
>>> outputs = model(
... input_ids=inputs.input_ids,
... attention_mask=inputs.attention_mask,
... pixel_values=inputs.pixel_values,
... return_loss=True,
... )
>>> loss, logits_per_image = outputs.loss, outputs.logits_per_image # this is the image-text similarity score
>>> # save and load from pretrained
>>> model.save_pretrained("vit-bert")
>>> model = VisionTextDualEncoderModel.from_pretrained("vit-bert")
>>> # inference
>>> outputs = model(**inputs)
>>> logits_per_image = outputs.logits_per_image # this is the image-text similarity score
>>> probs = logits_per_image.softmax(dim=1) # we can take the softmax to get the label probabilities
```"""
return_dict = return_dict if return_dict is not None else self.config.return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[1] # pooler_output
image_embeds = self.visual_projection(image_embeds)
text_embeds = text_outputs[1] # pooler_output
text_embeds = self.text_projection(text_embeds)
# normalized features
image_embeds = image_embeds / image_embeds.norm(dim=-1, keepdim=True)
text_embeds = text_embeds / text_embeds.norm(dim=-1, keepdim=True)
# cosine similarity as logits
logit_scale = self.logit_scale.exp()
logits_per_text = torch.matmul(text_embeds, image_embeds.t()) * logit_scale
logits_per_image = logits_per_text.T
loss = None
if return_loss:
loss = clip_loss(logits_per_text)
if not return_dict:
output = (logits_per_image, logits_per_text, text_embeds, image_embeds, text_outputs, vision_outputs)
return ((loss,) + output) if loss is not None else output
return CLIPOutput(
loss=loss,
logits_per_image=logits_per_image,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
image_embeds=image_embeds,
text_model_output=text_outputs,
vision_model_output=vision_outputs,
)
@classmethod
def from_pretrained(cls, *args, **kwargs):
# At the moment fast initialization is not supported
# for composite models
kwargs["_fast_init"] = False
return super().from_pretrained(*args, **kwargs)
@classmethod
def from_vision_text_pretrained(
cls,
vision_model_name_or_path: str = None,
text_model_name_or_path: str = None,
*model_args,
**kwargs,
) -> PreTrainedModel:
"""
Params:
vision_model_name_or_path (`str`, *optional*, defaults to `None`):
Information necessary to initiate the vision model. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~PreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *PyTorch checkpoint folder* (e.g, `./pt_model`). In this case, `from_pt`
should be set to `True` and a configuration object should be provided as `config` argument. This
loading path is slower than converting the PyTorch checkpoint in a Flax model using the provided
conversion scripts and loading the Flax model afterwards.
text_model_name_or_path (`str`, *optional*):
Information necessary to initiate the text model. Can be either:
- A string, the *model id* of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like `bert-base-uncased`, or namespaced under a
user or organization name, like `dbmdz/bert-base-german-cased`.
- A path to a *directory* containing model weights saved using
[`~PreTrainedModel.save_pretrained`], e.g., `./my_model_directory/`.
- A path or url to a *PyTorch checkpoint folder* (e.g, `./pt_model`). In this case, `from_pt`
should be set to `True` and a configuration object should be provided as `config` argument. This
loading path is slower than converting the PyTorch checkpoint in a Flax model using the provided
conversion scripts and loading the Flax model afterwards.
model_args (remaining positional arguments, *optional*):
All remaning positional arguments will be passed to the underlying model's `__init__` method.
kwargs (remaining dictionary of keyword arguments, *optional*):
Can be used to update the configuration object (after it being loaded) and initiate the model (e.g.,
`output_attentions=True`).
- To update the text configuration, use the prefix *text_* for each configuration parameter.
- To update the vision configuration, use the prefix *vision_* for each configuration parameter.
- To update the parent model configuration, do not use a prefix for each configuration parameter.
Behaves differently depending on whether a `config` is provided or automatically loaded.
Example:
```python
>>> from transformers import VisionTextDualEncoderModel
>>> # initialize a model from pretrained ViT and BERT models. Note that the projection layers will be randomly initialized.
>>> model = VisionTextDualEncoderModel.from_vision_text_pretrained(
... "google/vit-base-patch16-224", "bert-base-uncased"
... )
>>> # saving model after fine-tuning
>>> model.save_pretrained("./vit-bert")
>>> # load fine-tuned model
>>> model = VisionTextDualEncoderModel.from_pretrained("./vit-bert")
```"""
kwargs_vision = {
argument[len("vision_") :]: value for argument, value in kwargs.items() if argument.startswith("vision_")
}
kwargs_text = {
argument[len("text_") :]: value for argument, value in kwargs.items() if argument.startswith("text_")
}
# remove vision, text kwargs from kwargs
for key in kwargs_vision.keys():
del kwargs["vision_" + key]
for key in kwargs_text.keys():
del kwargs["text_" + key]
# Load and initialize the vision and text model
vision_model = kwargs_vision.pop("model", None)
if vision_model is None:
if vision_model_name_or_path is None:
raise ValueError(
"If `vision_model` is not defined as an argument, a `vision_model_name_or_path` has to be defined"
)
if "config" not in kwargs_vision:
vision_config = AutoConfig.from_pretrained(vision_model_name_or_path)
if vision_config.model_type == "clip":
kwargs_vision["config"] = vision_config.vision_config
vision_model = CLIPVisionModel.from_pretrained(vision_model_name_or_path, *model_args, **kwargs_vision)
# TODO: Should we use the pre-trained projection as well ?
else:
kwargs_vision["config"] = vision_config
vision_model = AutoModel.from_pretrained(vision_model_name_or_path, *model_args, **kwargs_vision)
text_model = kwargs_text.pop("model", None)
if text_model is None:
if text_model_name_or_path is None:
raise ValueError(
"If `text_model` is not defined as an argument, a `text_model_name_or_path` has to be defined"
)
if "config" not in kwargs_text:
text_config = AutoConfig.from_pretrained(text_model_name_or_path)
kwargs_text["config"] = text_config
text_model = AutoModel.from_pretrained(text_model_name_or_path, *model_args, **kwargs_text)
# instantiate config with corresponding kwargs
config = VisionTextDualEncoderConfig.from_vision_text_configs(vision_model.config, text_model.config, **kwargs)
# init model
model = cls(config=config, vision_model=vision_model, text_model=text_model)
# the projection layers are always newly initialized when loading the model
# using pre-trained vision and text model.
logger.warning(
"The projection layer and logit scale weights `['visual_projection.weight', 'text_projection.weight',"
" 'logit_scale']` are newly initialized. You should probably TRAIN this model on a down-stream task to be"
" able to use it for predictions and inference."
)
return model
| 25,315 | 46.055762 | 131 | py |
transformers | transformers-main/src/transformers/models/qdqbert/configuration_qdqbert.py | # coding=utf-8
# Copyright 2021 NVIDIA Corporation and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" QDQBERT model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
QDQBERT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"bert-base-uncased": "https://huggingface.co/bert-base-uncased/resolve/main/config.json",
# QDQBERT models can be loaded from any BERT checkpoint, available at https://huggingface.co/models?filter=bert
}
class QDQBertConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`QDQBertModel`]. It is used to instantiate an
QDQBERT model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the BERT
[bert-base-uncased](https://huggingface.co/bert-base-uncased) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the QDQBERT model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`QDQBertModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimension of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimension of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probabilitiy for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`QDQBertModel`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
Examples:
```python
>>> from transformers import QDQBertModel, QDQBertConfig
>>> # Initializing a QDQBERT bert-base-uncased style configuration
>>> configuration = QDQBertConfig()
>>> # Initializing a model from the bert-base-uncased style configuration
>>> model = QDQBertModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "qdqbert"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
use_cache=True,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.type_vocab_size = type_vocab_size
self.layer_norm_eps = layer_norm_eps
self.use_cache = use_cache
| 5,895 | 46.168 | 119 | py |
transformers | transformers-main/src/transformers/models/qdqbert/modeling_qdqbert.py | # coding=utf-8
# Copyright 2021 NVIDIA Corporation and The HuggingFace Team.
# Copyright (c) 2018-2021, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch QDQBERT model."""
import math
import os
import warnings
from typing import Dict, List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
NextSentencePredictorOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_pytorch_quantization_available,
logging,
replace_return_docstrings,
requires_backends,
)
from .configuration_qdqbert import QDQBertConfig
logger = logging.get_logger(__name__)
# soft dependency
if is_pytorch_quantization_available():
try:
from pytorch_quantization import nn as quant_nn
from pytorch_quantization.nn.modules.tensor_quantizer import TensorQuantizer
except OSError:
logger.error(
"QDQBERT model are not usable since `pytorch_quantization` can't be loaded. Please try to reinstall it"
" following the instructions here:"
" https://github.com/NVIDIA/TensorRT/tree/master/tools/pytorch-quantization."
)
_CHECKPOINT_FOR_DOC = "bert-base-uncased"
_CONFIG_FOR_DOC = "QDQBertConfig"
QDQBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"bert-base-uncased",
# See all BERT models at https://huggingface.co/models?filter=bert
]
def load_tf_weights_in_qdqbert(model, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model
# Copied from transformers.models.bert.modeling_bert.BertEmbeddings with Bert -> QDQBert
class QDQBertEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.register_buffer(
"token_type_ids", torch.zeros(self.position_ids.size(), dtype=torch.long), persistent=False
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
past_key_values_length: int = 0,
) -> torch.Tensor:
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class QDQBertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = quant_nn.QuantLinear(config.hidden_size, self.all_head_size)
self.key = quant_nn.QuantLinear(config.hidden_size, self.all_head_size)
self.value = quant_nn.QuantLinear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
self.matmul_q_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
self.matmul_k_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
self.matmul_v_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
self.matmul_a_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(
self.matmul_q_input_quantizer(query_layer), self.matmul_k_input_quantizer(key_layer.transpose(-1, -2))
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in QDQBertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.Softmax(dim=-1)(attention_scores)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(
self.matmul_a_input_quantizer(attention_probs), self.matmul_v_input_quantizer(value_layer)
)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class QDQBertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
# Quantize Linear layer
self.dense = quant_nn.QuantLinear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# Quantize the inputs to the residual add
self.add_local_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
self.add_residual_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
# Quantize the inputs to the residual add
add_local = self.add_local_input_quantizer(hidden_states)
add_residual = self.add_residual_input_quantizer(input_tensor)
hidden_states = self.LayerNorm(add_local + add_residual)
return hidden_states
# Based on transformers.models.bert.modeling_bert.BertAttention with Bert -> QDQBert
class QDQBertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = QDQBertSelfAttention(config)
self.output = QDQBertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class QDQBertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
# Quantize Linear layer
self.dense = quant_nn.QuantLinear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class QDQBertOutput(nn.Module):
def __init__(self, config):
super().__init__()
# Quantize Linear layer
self.dense = quant_nn.QuantLinear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# Quantize the inputs to the residual add
self.add_local_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
self.add_residual_input_quantizer = TensorQuantizer(quant_nn.QuantLinear.default_quant_desc_input)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
# Quantize the inputs to the residual add
add_local = self.add_local_input_quantizer(hidden_states)
add_residual = self.add_residual_input_quantizer(input_tensor)
hidden_states = self.LayerNorm(add_local + add_residual)
return hidden_states
# Based on transformers.models.bert.modeling_bert.BertLayer with Bert -> QDQBert
class QDQBertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.seq_len_dim = 1
self.attention = QDQBertAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = QDQBertAttention(config)
self.intermediate = QDQBertIntermediate(config)
self.output = QDQBertOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = self.feed_forward_chunk(attention_output)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
# Based on transformers.models.bert.modeling_bert.BertEncoder with Bert -> QDQBert
class QDQBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([QDQBertLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler with Bert -> QDQBert
class QDQBertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
# Copied from transformers.models.bert.modeling_bert.BertPredictionHeadTransform with Bert -> QDQBert
class QDQBertPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
# Based on transformers.models.bert.modeling_bert.BertLMPredictionHead with Bert -> QDQBert
class QDQBertLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = QDQBertPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
# Based on transformers.models.bert.modeling_bert.BertOnlyMLMHead with Bert -> QDQBert
class QDQBertOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = QDQBertLMPredictionHead(config)
def forward(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
# Copied from transformers.models.bert.modeling_bert.BertOnlyNSPHead with Bert -> QDQBert
class QDQBertOnlyNSPHead(nn.Module):
def __init__(self, config):
super().__init__()
self.seq_relationship = nn.Linear(config.hidden_size, 2)
def forward(self, pooled_output):
seq_relationship_score = self.seq_relationship(pooled_output)
return seq_relationship_score
# Based on transformers.models.bert.modeling_bert.BertPreTrainingHeads with Bert -> QDQBert
class QDQBertPreTrainingHeads(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = QDQBertLMPredictionHead(config)
self.seq_relationship = nn.Linear(config.hidden_size, 2)
def forward(self, sequence_output, pooled_output):
prediction_scores = self.predictions(sequence_output)
seq_relationship_score = self.seq_relationship(pooled_output)
return prediction_scores, seq_relationship_score
# Based on transformers.models.bert.modeling_bert.BertPreTrainedModel with Bert -> QDQBert
class QDQBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = QDQBertConfig
load_tf_weights = load_tf_weights_in_qdqbert
base_model_prefix = "bert"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, QDQBertEncoder):
module.gradient_checkpointing = value
QDQBERT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`QDQBertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
QDQBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare QDQBERT Model transformer outputting raw hidden-states without any specific head on top.",
QDQBERT_START_DOCSTRING,
)
class QDQBertModel(QDQBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config, add_pooling_layer: bool = True):
requires_backends(self, "pytorch_quantization")
super().__init__(config)
self.config = config
self.embeddings = QDQBertEmbeddings(config)
self.encoder = QDQBertEncoder(config)
self.pooler = QDQBertPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune: Dict[int, List[int]]):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
batch_size, seq_length = input_shape
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size, seq_length = input_shape
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings(
"""QDQBERT Model with a `language modeling` head on top for CLM fine-tuning.""", QDQBERT_START_DOCSTRING
)
class QDQBertLMHeadModel(QDQBertPreTrainedModel):
_tied_weights_keys = ["predictions.decoder.weight", "predictions.decoder.bias"]
def __init__(self, config):
super().__init__(config)
if not config.is_decoder:
logger.warning("If you want to use `QDQBertLMHeadModel` as a standalone, add `is_decoder=True.`")
self.bert = QDQBertModel(config, add_pooling_layer=False)
self.cls = QDQBertOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=CausalLMOutputWithCrossAttentions, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.LongTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, CausalLMOutputWithCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels n `[0, ..., config.vocab_size]`
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, QDQBertLMHeadModel, QDQBertConfig
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("bert-base-cased")
>>> config = QDQBertConfig.from_pretrained("bert-base-cased")
>>> config.is_decoder = True
>>> model = QDQBertLMHeadModel.from_pretrained("bert-base-cased", config=config)
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous()
labels = labels[:, 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((lm_loss,) + output) if lm_loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(
self,
input_ids: Optional[torch.LongTensor],
past_key_values=None,
attention_mask: Optional[torch.Tensor] = None,
**model_kwargs,
):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_shape)
# cut decoder_input_ids if past is used
if past_key_values is not None:
input_ids = input_ids[:, -1:]
return {"input_ids": input_ids, "attention_mask": attention_mask, "past_key_values": past_key_values}
def _reorder_cache(self, past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (tuple(past_state.index_select(0, beam_idx) for past_state in layer_past),)
return reordered_past
@add_start_docstrings("""QDQBERT Model with a `language modeling` head on top.""", QDQBERT_START_DOCSTRING)
class QDQBertForMaskedLM(QDQBertPreTrainedModel):
_tied_weights_keys = ["predictions.decoder.weight", "predictions.decoder.bias"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `QDQBertForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.bert = QDQBertModel(config, add_pooling_layer=False)
self.cls = QDQBertOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def prepare_inputs_for_generation(
self, input_ids: torch.LongTensor, attention_mask: Optional[torch.FloatTensor] = None, **model_kwargs
):
input_shape = input_ids.shape
effective_batch_size = input_shape[0]
# add a dummy token
if self.config.pad_token_id is None:
raise ValueError("The PAD token should be defined for generation")
attention_mask = torch.cat([attention_mask, attention_mask.new_zeros((attention_mask.shape[0], 1))], dim=-1)
dummy_token = torch.full(
(effective_batch_size, 1), self.config.pad_token_id, dtype=torch.long, device=input_ids.device
)
input_ids = torch.cat([input_ids, dummy_token], dim=1)
return {"input_ids": input_ids, "attention_mask": attention_mask}
@add_start_docstrings(
"""Bert Model with a `next sentence prediction (classification)` head on top.""",
QDQBERT_START_DOCSTRING,
)
class QDQBertForNextSentencePrediction(QDQBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bert = QDQBertModel(config)
self.cls = QDQBertOnlyNSPHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=NextSentencePredictorOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> Union[Tuple, NextSentencePredictorOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the next sequence prediction (classification) loss. Input should be a sequence pair
(see `input_ids` docstring). Indices should be in `[0, 1]`:
- 0 indicates sequence B is a continuation of sequence A,
- 1 indicates sequence B is a random sequence.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, QDQBertForNextSentencePrediction
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("bert-base-uncased")
>>> model = QDQBertForNextSentencePrediction.from_pretrained("bert-base-uncased")
>>> prompt = "In Italy, pizza served in formal settings, such as at a restaurant, is presented unsliced."
>>> next_sentence = "The sky is blue due to the shorter wavelength of blue light."
>>> encoding = tokenizer(prompt, next_sentence, return_tensors="pt")
>>> outputs = model(**encoding, labels=torch.LongTensor([1]))
>>> logits = outputs.logits
>>> assert logits[0, 0] < logits[0, 1] # next sentence was random
```"""
if "next_sentence_label" in kwargs:
warnings.warn(
"The `next_sentence_label` argument is deprecated and will be removed in a future version, use"
" `labels` instead.",
FutureWarning,
)
labels = kwargs.pop("next_sentence_label")
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
seq_relationship_scores = self.cls(pooled_output)
next_sentence_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
next_sentence_loss = loss_fct(seq_relationship_scores.view(-1, 2), labels.view(-1))
if not return_dict:
output = (seq_relationship_scores,) + outputs[2:]
return ((next_sentence_loss,) + output) if next_sentence_loss is not None else output
return NextSentencePredictorOutput(
loss=next_sentence_loss,
logits=seq_relationship_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
QDQBERT_START_DOCSTRING,
)
class QDQBertForSequenceClassification(QDQBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.bert = QDQBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
QDQBERT_START_DOCSTRING,
)
class QDQBertForMultipleChoice(QDQBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bert = QDQBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MultipleChoiceModelOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
QDQBERT Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
QDQBERT_START_DOCSTRING,
)
class QDQBertForTokenClassification(QDQBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = QDQBertModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
QDQBERT Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
QDQBERT_START_DOCSTRING,
)
class QDQBertForQuestionAnswering(QDQBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = QDQBertModel(config, add_pooling_layer=False)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(QDQBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 77,045 | 43.355786 | 198 | py |
transformers | transformers-main/src/transformers/models/qdqbert/__init__.py | # Copyright 2021 NVIDIA Corporation and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_qdqbert": ["QDQBERT_PRETRAINED_CONFIG_ARCHIVE_MAP", "QDQBertConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_qdqbert"] = [
"QDQBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"QDQBertForMaskedLM",
"QDQBertForMultipleChoice",
"QDQBertForNextSentencePrediction",
"QDQBertForQuestionAnswering",
"QDQBertForSequenceClassification",
"QDQBertForTokenClassification",
"QDQBertLayer",
"QDQBertLMHeadModel",
"QDQBertModel",
"QDQBertPreTrainedModel",
"load_tf_weights_in_qdqbert",
]
if TYPE_CHECKING:
from .configuration_qdqbert import QDQBERT_PRETRAINED_CONFIG_ARCHIVE_MAP, QDQBertConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_qdqbert import (
QDQBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
QDQBertForMaskedLM,
QDQBertForMultipleChoice,
QDQBertForNextSentencePrediction,
QDQBertForQuestionAnswering,
QDQBertForSequenceClassification,
QDQBertForTokenClassification,
QDQBertLayer,
QDQBertLMHeadModel,
QDQBertModel,
QDQBertPreTrainedModel,
load_tf_weights_in_qdqbert,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 2,402 | 32.375 | 113 | py |
transformers | transformers-main/src/transformers/models/cvt/convert_cvt_original_pytorch_checkpoint_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert CvT checkpoints from the original repository.
URL: https://github.com/microsoft/CvT"""
import argparse
import json
from collections import OrderedDict
import torch
from huggingface_hub import cached_download, hf_hub_url
from transformers import AutoImageProcessor, CvtConfig, CvtForImageClassification
def embeddings(idx):
"""
The function helps in renaming embedding layer weights.
Args:
idx: stage number in original model
"""
embed = []
embed.append(
(
f"cvt.encoder.stages.{idx}.embedding.convolution_embeddings.projection.weight",
f"stage{idx}.patch_embed.proj.weight",
)
)
embed.append(
(
f"cvt.encoder.stages.{idx}.embedding.convolution_embeddings.projection.bias",
f"stage{idx}.patch_embed.proj.bias",
)
)
embed.append(
(
f"cvt.encoder.stages.{idx}.embedding.convolution_embeddings.normalization.weight",
f"stage{idx}.patch_embed.norm.weight",
)
)
embed.append(
(
f"cvt.encoder.stages.{idx}.embedding.convolution_embeddings.normalization.bias",
f"stage{idx}.patch_embed.norm.bias",
)
)
return embed
def attention(idx, cnt):
"""
The function helps in renaming attention block layers weights.
Args:
idx: stage number in original model
cnt: count of blocks in each stage
"""
attention_weights = []
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_query.convolution_projection.convolution.weight",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_q.conv.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_query.convolution_projection.normalization.weight",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_q.bn.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_query.convolution_projection.normalization.bias",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_q.bn.bias",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_query.convolution_projection.normalization.running_mean",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_q.bn.running_mean",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_query.convolution_projection.normalization.running_var",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_q.bn.running_var",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_query.convolution_projection.normalization.num_batches_tracked",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_q.bn.num_batches_tracked",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_key.convolution_projection.convolution.weight",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_k.conv.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_key.convolution_projection.normalization.weight",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_k.bn.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_key.convolution_projection.normalization.bias",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_k.bn.bias",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_key.convolution_projection.normalization.running_mean",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_k.bn.running_mean",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_key.convolution_projection.normalization.running_var",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_k.bn.running_var",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_key.convolution_projection.normalization.num_batches_tracked",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_k.bn.num_batches_tracked",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_value.convolution_projection.convolution.weight",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_v.conv.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_value.convolution_projection.normalization.weight",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_v.bn.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_value.convolution_projection.normalization.bias",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_v.bn.bias",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_value.convolution_projection.normalization.running_mean",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_v.bn.running_mean",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_value.convolution_projection.normalization.running_var",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_v.bn.running_var",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.convolution_projection_value.convolution_projection.normalization.num_batches_tracked",
f"stage{idx}.blocks.{cnt}.attn.conv_proj_v.bn.num_batches_tracked",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.projection_query.weight",
f"stage{idx}.blocks.{cnt}.attn.proj_q.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.projection_query.bias",
f"stage{idx}.blocks.{cnt}.attn.proj_q.bias",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.projection_key.weight",
f"stage{idx}.blocks.{cnt}.attn.proj_k.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.projection_key.bias",
f"stage{idx}.blocks.{cnt}.attn.proj_k.bias",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.projection_value.weight",
f"stage{idx}.blocks.{cnt}.attn.proj_v.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.attention.projection_value.bias",
f"stage{idx}.blocks.{cnt}.attn.proj_v.bias",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.output.dense.weight",
f"stage{idx}.blocks.{cnt}.attn.proj.weight",
)
)
attention_weights.append(
(
f"cvt.encoder.stages.{idx}.layers.{cnt}.attention.output.dense.bias",
f"stage{idx}.blocks.{cnt}.attn.proj.bias",
)
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.intermediate.dense.weight", f"stage{idx}.blocks.{cnt}.mlp.fc1.weight")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.intermediate.dense.bias", f"stage{idx}.blocks.{cnt}.mlp.fc1.bias")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.output.dense.weight", f"stage{idx}.blocks.{cnt}.mlp.fc2.weight")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.output.dense.bias", f"stage{idx}.blocks.{cnt}.mlp.fc2.bias")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.layernorm_before.weight", f"stage{idx}.blocks.{cnt}.norm1.weight")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.layernorm_before.bias", f"stage{idx}.blocks.{cnt}.norm1.bias")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.layernorm_after.weight", f"stage{idx}.blocks.{cnt}.norm2.weight")
)
attention_weights.append(
(f"cvt.encoder.stages.{idx}.layers.{cnt}.layernorm_after.bias", f"stage{idx}.blocks.{cnt}.norm2.bias")
)
return attention_weights
def cls_token(idx):
"""
Function helps in renaming cls_token weights
"""
token = []
token.append((f"cvt.encoder.stages.{idx}.cls_token", "stage2.cls_token"))
return token
def final():
"""
Function helps in renaming final classification layer
"""
head = []
head.append(("layernorm.weight", "norm.weight"))
head.append(("layernorm.bias", "norm.bias"))
head.append(("classifier.weight", "head.weight"))
head.append(("classifier.bias", "head.bias"))
return head
def convert_cvt_checkpoint(cvt_model, image_size, cvt_file_name, pytorch_dump_folder):
"""
Fucntion to convert the microsoft cvt checkpoint to huggingface checkpoint
"""
img_labels_file = "imagenet-1k-id2label.json"
num_labels = 1000
repo_id = "huggingface/label-files"
num_labels = num_labels
id2label = json.load(open(cached_download(hf_hub_url(repo_id, img_labels_file, repo_type="dataset")), "r"))
id2label = {int(k): v for k, v in id2label.items()}
id2label = id2label
label2id = {v: k for k, v in id2label.items()}
config = config = CvtConfig(num_labels=num_labels, id2label=id2label, label2id=label2id)
# For depth size 13 (13 = 1+2+10)
if cvt_model.rsplit("/", 1)[-1][4:6] == "13":
config.depth = [1, 2, 10]
# For depth size 21 (21 = 1+4+16)
elif cvt_model.rsplit("/", 1)[-1][4:6] == "21":
config.depth = [1, 4, 16]
# For wide cvt (similar to wide-resnet) depth size 24 (w24 = 2 + 2 20)
else:
config.depth = [2, 2, 20]
config.num_heads = [3, 12, 16]
config.embed_dim = [192, 768, 1024]
model = CvtForImageClassification(config)
image_processor = AutoImageProcessor.from_pretrained("facebook/convnext-base-224-22k-1k")
image_processor.size["shortest_edge"] = image_size
original_weights = torch.load(cvt_file_name, map_location=torch.device("cpu"))
huggingface_weights = OrderedDict()
list_of_state_dict = []
for idx in range(len(config.depth)):
if config.cls_token[idx]:
list_of_state_dict = list_of_state_dict + cls_token(idx)
list_of_state_dict = list_of_state_dict + embeddings(idx)
for cnt in range(config.depth[idx]):
list_of_state_dict = list_of_state_dict + attention(idx, cnt)
list_of_state_dict = list_of_state_dict + final()
for gg in list_of_state_dict:
print(gg)
for i in range(len(list_of_state_dict)):
huggingface_weights[list_of_state_dict[i][0]] = original_weights[list_of_state_dict[i][1]]
model.load_state_dict(huggingface_weights)
model.save_pretrained(pytorch_dump_folder)
image_processor.save_pretrained(pytorch_dump_folder)
# Download the weights from zoo: https://1drv.ms/u/s!AhIXJn_J-blW9RzF3rMW7SsLHa8h?e=blQ0Al
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--cvt_model",
default="cvt-w24",
type=str,
help="Name of the cvt model you'd like to convert.",
)
parser.add_argument(
"--image_size",
default=384,
type=int,
help="Input Image Size",
)
parser.add_argument(
"--cvt_file_name",
default=r"cvtmodels\CvT-w24-384x384-IN-22k.pth",
type=str,
help="Input Image Size",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model directory."
)
args = parser.parse_args()
convert_cvt_checkpoint(args.cvt_model, args.image_size, args.cvt_file_name, args.pytorch_dump_folder_path)
| 13,570 | 36.385675 | 159 | py |
transformers | transformers-main/src/transformers/models/cvt/configuration_cvt.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" CvT model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
CVT_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"microsoft/cvt-13": "https://huggingface.co/microsoft/cvt-13/resolve/main/config.json",
# See all Cvt models at https://huggingface.co/models?filter=cvt
}
class CvtConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`CvtModel`]. It is used to instantiate a CvT model
according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the CvT
[microsoft/cvt-13](https://huggingface.co/microsoft/cvt-13) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
patch_sizes (`List[int]`, *optional*, defaults to `[7, 3, 3]`):
The kernel size of each encoder's patch embedding.
patch_stride (`List[int]`, *optional*, defaults to `[4, 2, 2]`):
The stride size of each encoder's patch embedding.
patch_padding (`List[int]`, *optional*, defaults to `[2, 1, 1]`):
The padding size of each encoder's patch embedding.
embed_dim (`List[int]`, *optional*, defaults to `[64, 192, 384]`):
Dimension of each of the encoder blocks.
num_heads (`List[int]`, *optional*, defaults to `[1, 3, 6]`):
Number of attention heads for each attention layer in each block of the Transformer encoder.
depth (`List[int]`, *optional*, defaults to `[1, 2, 10]`):
The number of layers in each encoder block.
mlp_ratios (`List[float]`, *optional*, defaults to `[4.0, 4.0, 4.0, 4.0]`):
Ratio of the size of the hidden layer compared to the size of the input layer of the Mix FFNs in the
encoder blocks.
attention_drop_rate (`List[float]`, *optional*, defaults to `[0.0, 0.0, 0.0]`):
The dropout ratio for the attention probabilities.
drop_rate (`List[float]`, *optional*, defaults to `[0.0, 0.0, 0.0]`):
The dropout ratio for the patch embeddings probabilities.
drop_path_rate (`List[float]`, *optional*, defaults to `[0.0, 0.0, 0.1]`):
The dropout probability for stochastic depth, used in the blocks of the Transformer encoder.
qkv_bias (`List[bool]`, *optional*, defaults to `[True, True, True]`):
The bias bool for query, key and value in attentions
cls_token (`List[bool]`, *optional*, defaults to `[False, False, True]`):
Whether or not to add a classification token to the output of each of the last 3 stages.
qkv_projection_method (`List[string]`, *optional*, defaults to ["dw_bn", "dw_bn", "dw_bn"]`):
The projection method for query, key and value Default is depth-wise convolutions with batch norm. For
Linear projection use "avg".
kernel_qkv (`List[int]`, *optional*, defaults to `[3, 3, 3]`):
The kernel size for query, key and value in attention layer
padding_kv (`List[int]`, *optional*, defaults to `[1, 1, 1]`):
The padding size for key and value in attention layer
stride_kv (`List[int]`, *optional*, defaults to `[2, 2, 2]`):
The stride size for key and value in attention layer
padding_q (`List[int]`, *optional*, defaults to `[1, 1, 1]`):
The padding size for query in attention layer
stride_q (`List[int]`, *optional*, defaults to `[1, 1, 1]`):
The stride size for query in attention layer
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-6):
The epsilon used by the layer normalization layers.
Example:
```python
>>> from transformers import CvtConfig, CvtModel
>>> # Initializing a Cvt msft/cvt style configuration
>>> configuration = CvtConfig()
>>> # Initializing a model (with random weights) from the msft/cvt style configuration
>>> model = CvtModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "cvt"
def __init__(
self,
num_channels=3,
patch_sizes=[7, 3, 3],
patch_stride=[4, 2, 2],
patch_padding=[2, 1, 1],
embed_dim=[64, 192, 384],
num_heads=[1, 3, 6],
depth=[1, 2, 10],
mlp_ratio=[4.0, 4.0, 4.0],
attention_drop_rate=[0.0, 0.0, 0.0],
drop_rate=[0.0, 0.0, 0.0],
drop_path_rate=[0.0, 0.0, 0.1],
qkv_bias=[True, True, True],
cls_token=[False, False, True],
qkv_projection_method=["dw_bn", "dw_bn", "dw_bn"],
kernel_qkv=[3, 3, 3],
padding_kv=[1, 1, 1],
stride_kv=[2, 2, 2],
padding_q=[1, 1, 1],
stride_q=[1, 1, 1],
initializer_range=0.02,
layer_norm_eps=1e-12,
**kwargs,
):
super().__init__(**kwargs)
self.num_channels = num_channels
self.patch_sizes = patch_sizes
self.patch_stride = patch_stride
self.patch_padding = patch_padding
self.embed_dim = embed_dim
self.num_heads = num_heads
self.depth = depth
self.mlp_ratio = mlp_ratio
self.attention_drop_rate = attention_drop_rate
self.drop_rate = drop_rate
self.drop_path_rate = drop_path_rate
self.qkv_bias = qkv_bias
self.cls_token = cls_token
self.qkv_projection_method = qkv_projection_method
self.kernel_qkv = kernel_qkv
self.padding_kv = padding_kv
self.stride_kv = stride_kv
self.padding_q = padding_q
self.stride_q = stride_q
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
| 6,860 | 45.358108 | 119 | py |
transformers | transformers-main/src/transformers/models/cvt/modeling_tf_cvt.py | # coding=utf-8
# Copyright 2022 Microsoft Research and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 Cvt model."""
from __future__ import annotations
import collections.abc
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...modeling_tf_outputs import TFImageClassifierOutputWithNoAttention
from ...modeling_tf_utils import (
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_cvt import CvtConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "CvtConfig"
TF_CVT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"microsoft/cvt-13",
"microsoft/cvt-13-384",
"microsoft/cvt-13-384-22k",
"microsoft/cvt-21",
"microsoft/cvt-21-384",
"microsoft/cvt-21-384-22k",
# See all Cvt models at https://huggingface.co/models?filter=cvt
]
@dataclass
class TFBaseModelOutputWithCLSToken(ModelOutput):
"""
Base class for model's outputs.
Args:
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
cls_token_value (`tf.Tensor` of shape `(batch_size, 1, hidden_size)`):
Classification token at the output of the last layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer plus
the initial embedding outputs.
"""
last_hidden_state: tf.Tensor = None
cls_token_value: tf.Tensor = None
hidden_states: Tuple[tf.Tensor] | None = None
class TFCvtDropPath(tf.keras.layers.Layer):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
References:
(1) github.com:rwightman/pytorch-image-models
"""
def __init__(self, drop_prob: float, **kwargs):
super().__init__(**kwargs)
self.drop_prob = drop_prob
def call(self, x: tf.Tensor, training=None):
if self.drop_prob == 0.0 or not training:
return x
keep_prob = 1 - self.drop_prob
shape = (tf.shape(x)[0],) + (1,) * (len(tf.shape(x)) - 1)
random_tensor = keep_prob + tf.random.uniform(shape, 0, 1, dtype=self.compute_dtype)
random_tensor = tf.floor(random_tensor)
return (x / keep_prob) * random_tensor
class TFCvtEmbeddings(tf.keras.layers.Layer):
"""Construct the Convolutional Token Embeddings."""
def __init__(
self,
config: CvtConfig,
patch_size: int,
embed_dim: int,
stride: int,
padding: int,
dropout_rate: float,
**kwargs,
):
super().__init__(**kwargs)
self.convolution_embeddings = TFCvtConvEmbeddings(
config,
patch_size=patch_size,
embed_dim=embed_dim,
stride=stride,
padding=padding,
name="convolution_embeddings",
)
self.dropout = tf.keras.layers.Dropout(dropout_rate)
def call(self, pixel_values: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_state = self.convolution_embeddings(pixel_values)
hidden_state = self.dropout(hidden_state, training=training)
return hidden_state
class TFCvtConvEmbeddings(tf.keras.layers.Layer):
"""Image to Convolution Embeddings. This convolutional operation aims to model local spatial contexts."""
def __init__(self, config: CvtConfig, patch_size: int, embed_dim: int, stride: int, padding: int, **kwargs):
super().__init__(**kwargs)
self.padding = tf.keras.layers.ZeroPadding2D(padding=padding)
self.patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
self.projection = tf.keras.layers.Conv2D(
filters=embed_dim,
kernel_size=patch_size,
strides=stride,
padding="valid",
data_format="channels_last",
kernel_initializer=get_initializer(config.initializer_range),
name="projection",
)
# Using the same default epsilon as PyTorch
self.normalization = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="normalization")
def call(self, pixel_values: tf.Tensor) -> tf.Tensor:
if isinstance(pixel_values, dict):
pixel_values = pixel_values["pixel_values"]
pixel_values = self.projection(self.padding(pixel_values))
# "batch_size, height, width, num_channels -> batch_size, (height*width), num_channels"
batch_size, height, width, num_channels = shape_list(pixel_values)
hidden_size = height * width
pixel_values = tf.reshape(pixel_values, shape=(batch_size, hidden_size, num_channels))
pixel_values = self.normalization(pixel_values)
# "batch_size, (height*width), num_channels -> batch_size, height, width, num_channels"
pixel_values = tf.reshape(pixel_values, shape=(batch_size, height, width, num_channels))
return pixel_values
class TFCvtSelfAttentionConvProjection(tf.keras.layers.Layer):
"""Convolutional projection layer."""
def __init__(self, config: CvtConfig, embed_dim: int, kernel_size: int, stride: int, padding: int, **kwargs):
super().__init__(**kwargs)
self.padding = tf.keras.layers.ZeroPadding2D(padding=padding)
self.convolution = tf.keras.layers.Conv2D(
filters=embed_dim,
kernel_size=kernel_size,
kernel_initializer=get_initializer(config.initializer_range),
padding="valid",
strides=stride,
use_bias=False,
name="convolution",
groups=embed_dim,
)
# Using the same default epsilon as PyTorch, TF uses (1 - pytorch momentum)
self.normalization = tf.keras.layers.BatchNormalization(epsilon=1e-5, momentum=0.9, name="normalization")
def call(self, hidden_state: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_state = self.convolution(self.padding(hidden_state))
hidden_state = self.normalization(hidden_state, training=training)
return hidden_state
class TFCvtSelfAttentionLinearProjection(tf.keras.layers.Layer):
"""Linear projection layer used to flatten tokens into 1D."""
def call(self, hidden_state: tf.Tensor) -> tf.Tensor:
# "batch_size, height, width, num_channels -> batch_size, (height*width), num_channels"
batch_size, height, width, num_channels = shape_list(hidden_state)
hidden_size = height * width
hidden_state = tf.reshape(hidden_state, shape=(batch_size, hidden_size, num_channels))
return hidden_state
class TFCvtSelfAttentionProjection(tf.keras.layers.Layer):
"""Convolutional Projection for Attention."""
def __init__(
self,
config: CvtConfig,
embed_dim: int,
kernel_size: int,
stride: int,
padding: int,
projection_method: str = "dw_bn",
**kwargs,
):
super().__init__(**kwargs)
if projection_method == "dw_bn":
self.convolution_projection = TFCvtSelfAttentionConvProjection(
config, embed_dim, kernel_size, stride, padding, name="convolution_projection"
)
self.linear_projection = TFCvtSelfAttentionLinearProjection()
def call(self, hidden_state: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_state = self.convolution_projection(hidden_state, training=training)
hidden_state = self.linear_projection(hidden_state)
return hidden_state
class TFCvtSelfAttention(tf.keras.layers.Layer):
"""
Self-attention layer. A depth-wise separable convolution operation (Convolutional Projection), is applied for
query, key, and value embeddings.
"""
def __init__(
self,
config: CvtConfig,
num_heads: int,
embed_dim: int,
kernel_size: int,
stride_q: int,
stride_kv: int,
padding_q: int,
padding_kv: int,
qkv_projection_method: str,
qkv_bias: bool,
attention_drop_rate: float,
with_cls_token: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.scale = embed_dim**-0.5
self.with_cls_token = with_cls_token
self.embed_dim = embed_dim
self.num_heads = num_heads
self.convolution_projection_query = TFCvtSelfAttentionProjection(
config,
embed_dim,
kernel_size,
stride_q,
padding_q,
projection_method="linear" if qkv_projection_method == "avg" else qkv_projection_method,
name="convolution_projection_query",
)
self.convolution_projection_key = TFCvtSelfAttentionProjection(
config,
embed_dim,
kernel_size,
stride_kv,
padding_kv,
projection_method=qkv_projection_method,
name="convolution_projection_key",
)
self.convolution_projection_value = TFCvtSelfAttentionProjection(
config,
embed_dim,
kernel_size,
stride_kv,
padding_kv,
projection_method=qkv_projection_method,
name="convolution_projection_value",
)
self.projection_query = tf.keras.layers.Dense(
units=embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
use_bias=qkv_bias,
bias_initializer="zeros",
name="projection_query",
)
self.projection_key = tf.keras.layers.Dense(
units=embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
use_bias=qkv_bias,
bias_initializer="zeros",
name="projection_key",
)
self.projection_value = tf.keras.layers.Dense(
units=embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
use_bias=qkv_bias,
bias_initializer="zeros",
name="projection_value",
)
self.dropout = tf.keras.layers.Dropout(attention_drop_rate)
def rearrange_for_multi_head_attention(self, hidden_state: tf.Tensor) -> tf.Tensor:
batch_size, hidden_size, _ = shape_list(hidden_state)
head_dim = self.embed_dim // self.num_heads
hidden_state = tf.reshape(hidden_state, shape=(batch_size, hidden_size, self.num_heads, head_dim))
hidden_state = tf.transpose(hidden_state, perm=(0, 2, 1, 3))
return hidden_state
def call(self, hidden_state: tf.Tensor, height: int, width: int, training: bool = False) -> tf.Tensor:
if self.with_cls_token:
cls_token, hidden_state = tf.split(hidden_state, [1, height * width], 1)
# "batch_size, (height*width), num_channels -> batch_size, height, width, num_channels"
batch_size, hidden_size, num_channels = shape_list(hidden_state)
hidden_state = tf.reshape(hidden_state, shape=(batch_size, height, width, num_channels))
key = self.convolution_projection_key(hidden_state, training=training)
query = self.convolution_projection_query(hidden_state, training=training)
value = self.convolution_projection_value(hidden_state, training=training)
if self.with_cls_token:
query = tf.concat((cls_token, query), axis=1)
key = tf.concat((cls_token, key), axis=1)
value = tf.concat((cls_token, value), axis=1)
head_dim = self.embed_dim // self.num_heads
query = self.rearrange_for_multi_head_attention(self.projection_query(query))
key = self.rearrange_for_multi_head_attention(self.projection_key(key))
value = self.rearrange_for_multi_head_attention(self.projection_value(value))
attention_score = tf.matmul(query, key, transpose_b=True) * self.scale
attention_probs = stable_softmax(logits=attention_score, axis=-1)
attention_probs = self.dropout(attention_probs, training=training)
context = tf.matmul(attention_probs, value)
# "batch_size, num_heads, hidden_size, head_dim -> batch_size, hidden_size, (num_heads*head_dim)"
_, _, hidden_size, _ = shape_list(context)
context = tf.transpose(context, perm=(0, 2, 1, 3))
context = tf.reshape(context, (batch_size, hidden_size, self.num_heads * head_dim))
return context
class TFCvtSelfOutput(tf.keras.layers.Layer):
"""Output of the Attention layer ."""
def __init__(self, config: CvtConfig, embed_dim: int, drop_rate: float, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=embed_dim, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = tf.keras.layers.Dropout(drop_rate)
def call(self, hidden_state: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_state = self.dense(inputs=hidden_state)
hidden_state = self.dropout(inputs=hidden_state, training=training)
return hidden_state
class TFCvtAttention(tf.keras.layers.Layer):
"""Attention layer. First chunk of the convolutional transformer block."""
def __init__(
self,
config: CvtConfig,
num_heads: int,
embed_dim: int,
kernel_size: int,
stride_q: int,
stride_kv: int,
padding_q: int,
padding_kv: int,
qkv_projection_method: str,
qkv_bias: bool,
attention_drop_rate: float,
drop_rate: float,
with_cls_token: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.attention = TFCvtSelfAttention(
config,
num_heads,
embed_dim,
kernel_size,
stride_q,
stride_kv,
padding_q,
padding_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
with_cls_token,
name="attention",
)
self.dense_output = TFCvtSelfOutput(config, embed_dim, drop_rate, name="output")
def prune_heads(self, heads):
raise NotImplementedError
def call(self, hidden_state: tf.Tensor, height: int, width: int, training: bool = False):
self_output = self.attention(hidden_state, height, width, training=training)
attention_output = self.dense_output(self_output, training=training)
return attention_output
class TFCvtIntermediate(tf.keras.layers.Layer):
"""Intermediate dense layer. Second chunk of the convolutional transformer block."""
def __init__(self, config: CvtConfig, embed_dim: int, mlp_ratio: int, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=int(embed_dim * mlp_ratio),
kernel_initializer=get_initializer(config.initializer_range),
activation="gelu",
name="dense",
)
def call(self, hidden_state: tf.Tensor) -> tf.Tensor:
hidden_state = self.dense(hidden_state)
return hidden_state
class TFCvtOutput(tf.keras.layers.Layer):
"""
Output of the Convolutional Transformer Block (last chunk). It consists of a MLP and a residual connection.
"""
def __init__(self, config: CvtConfig, embed_dim: int, drop_rate: int, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=embed_dim, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = tf.keras.layers.Dropout(drop_rate)
def call(self, hidden_state: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_state = self.dense(inputs=hidden_state)
hidden_state = self.dropout(inputs=hidden_state, training=training)
hidden_state = hidden_state + input_tensor
return hidden_state
class TFCvtLayer(tf.keras.layers.Layer):
"""
Convolutional Transformer Block composed by attention layers, normalization and multi-layer perceptrons (mlps). It
consists of 3 chunks : an attention layer, an intermediate dense layer and an output layer. This corresponds to the
`Block` class in the original implementation.
"""
def __init__(
self,
config: CvtConfig,
num_heads: int,
embed_dim: int,
kernel_size: int,
stride_q: int,
stride_kv: int,
padding_q: int,
padding_kv: int,
qkv_projection_method: str,
qkv_bias: bool,
attention_drop_rate: float,
drop_rate: float,
mlp_ratio: float,
drop_path_rate: float,
with_cls_token: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.attention = TFCvtAttention(
config,
num_heads,
embed_dim,
kernel_size,
stride_q,
stride_kv,
padding_q,
padding_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
drop_rate,
with_cls_token,
name="attention",
)
self.intermediate = TFCvtIntermediate(config, embed_dim, mlp_ratio, name="intermediate")
self.dense_output = TFCvtOutput(config, embed_dim, drop_rate, name="output")
# Using `layers.Activation` instead of `tf.identity` to better control `training` behaviour.
self.drop_path = (
TFCvtDropPath(drop_path_rate, name="drop_path")
if drop_path_rate > 0.0
else tf.keras.layers.Activation("linear", name="drop_path")
)
# Using the same default epsilon as PyTorch
self.layernorm_before = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_before")
self.layernorm_after = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_after")
def call(self, hidden_state: tf.Tensor, height: int, width: int, training: bool = False) -> tf.Tensor:
# in Cvt, layernorm is applied before self-attention
attention_output = self.attention(self.layernorm_before(hidden_state), height, width, training=training)
attention_output = self.drop_path(attention_output, training=training)
# first residual connection
hidden_state = attention_output + hidden_state
# in Cvt, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_state)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.dense_output(layer_output, hidden_state)
layer_output = self.drop_path(layer_output, training=training)
return layer_output
class TFCvtStage(tf.keras.layers.Layer):
"""
Cvt stage (encoder block). Each stage has 2 parts :
- (1) A Convolutional Token Embedding layer
- (2) A Convolutional Transformer Block (layer).
The classification token is added only in the last stage.
Args:
config ([`CvtConfig`]): Model configuration class.
stage (`int`): Stage number.
"""
def __init__(self, config: CvtConfig, stage: int, **kwargs):
super().__init__(**kwargs)
self.config = config
self.stage = stage
if self.config.cls_token[self.stage]:
self.cls_token = self.add_weight(
shape=(1, 1, self.config.embed_dim[-1]),
initializer=get_initializer(self.config.initializer_range),
trainable=True,
name="cvt.encoder.stages.2.cls_token",
)
self.embedding = TFCvtEmbeddings(
self.config,
patch_size=config.patch_sizes[self.stage],
stride=config.patch_stride[self.stage],
embed_dim=config.embed_dim[self.stage],
padding=config.patch_padding[self.stage],
dropout_rate=config.drop_rate[self.stage],
name="embedding",
)
drop_path_rates = tf.linspace(0.0, config.drop_path_rate[self.stage], config.depth[stage])
drop_path_rates = [x.numpy().item() for x in drop_path_rates]
self.layers = [
TFCvtLayer(
config,
num_heads=config.num_heads[self.stage],
embed_dim=config.embed_dim[self.stage],
kernel_size=config.kernel_qkv[self.stage],
stride_q=config.stride_q[self.stage],
stride_kv=config.stride_kv[self.stage],
padding_q=config.padding_q[self.stage],
padding_kv=config.padding_kv[self.stage],
qkv_projection_method=config.qkv_projection_method[self.stage],
qkv_bias=config.qkv_bias[self.stage],
attention_drop_rate=config.attention_drop_rate[self.stage],
drop_rate=config.drop_rate[self.stage],
mlp_ratio=config.mlp_ratio[self.stage],
drop_path_rate=drop_path_rates[self.stage],
with_cls_token=config.cls_token[self.stage],
name=f"layers.{j}",
)
for j in range(config.depth[self.stage])
]
def call(self, hidden_state: tf.Tensor, training: bool = False):
cls_token = None
hidden_state = self.embedding(hidden_state, training)
# "batch_size, height, width, num_channels -> batch_size, (height*width), num_channels"
batch_size, height, width, num_channels = shape_list(hidden_state)
hidden_size = height * width
hidden_state = tf.reshape(hidden_state, shape=(batch_size, hidden_size, num_channels))
if self.config.cls_token[self.stage]:
cls_token = tf.repeat(self.cls_token, repeats=batch_size, axis=0)
hidden_state = tf.concat((cls_token, hidden_state), axis=1)
for layer in self.layers:
layer_outputs = layer(hidden_state, height, width, training=training)
hidden_state = layer_outputs
if self.config.cls_token[self.stage]:
cls_token, hidden_state = tf.split(hidden_state, [1, height * width], 1)
# "batch_size, (height*width), num_channels -> batch_size, height, width, num_channels"
hidden_state = tf.reshape(hidden_state, shape=(batch_size, height, width, num_channels))
return hidden_state, cls_token
class TFCvtEncoder(tf.keras.layers.Layer):
"""
Convolutional Vision Transformer encoder. CVT has 3 stages of encoder blocks with their respective number of layers
(depth) being 1, 2 and 10.
Args:
config ([`CvtConfig`]): Model configuration class.
"""
config_class = CvtConfig
def __init__(self, config: CvtConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.stages = [
TFCvtStage(config, stage_idx, name=f"stages.{stage_idx}") for stage_idx in range(len(config.depth))
]
def call(
self,
pixel_values: TFModelInputType,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithCLSToken, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
hidden_state = pixel_values
# When running on CPU, `tf.keras.layers.Conv2D` doesn't support (batch_size, num_channels, height, width)
# as input format. So change the input format to (batch_size, height, width, num_channels).
hidden_state = tf.transpose(hidden_state, perm=(0, 2, 3, 1))
cls_token = None
for _, (stage_module) in enumerate(self.stages):
hidden_state, cls_token = stage_module(hidden_state, training=training)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
# Change back to (batch_size, num_channels, height, width) format to have uniformity in the modules
hidden_state = tf.transpose(hidden_state, perm=(0, 3, 1, 2))
if output_hidden_states:
all_hidden_states = tuple([tf.transpose(hs, perm=(0, 3, 1, 2)) for hs in all_hidden_states])
if not return_dict:
return tuple(v for v in [hidden_state, cls_token, all_hidden_states] if v is not None)
return TFBaseModelOutputWithCLSToken(
last_hidden_state=hidden_state,
cls_token_value=cls_token,
hidden_states=all_hidden_states,
)
@keras_serializable
class TFCvtMainLayer(tf.keras.layers.Layer):
"""Construct the Cvt model."""
config_class = CvtConfig
def __init__(self, config: CvtConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.encoder = TFCvtEncoder(config, name="encoder")
@unpack_inputs
def call(
self,
pixel_values: TFModelInputType | None = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithCLSToken, Tuple[tf.Tensor]]:
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
encoder_outputs = self.encoder(
pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
if not return_dict:
return (sequence_output,) + encoder_outputs[1:]
return TFBaseModelOutputWithCLSToken(
last_hidden_state=sequence_output,
cls_token_value=encoder_outputs.cls_token_value,
hidden_states=encoder_outputs.hidden_states,
)
class TFCvtPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = CvtConfig
base_model_prefix = "cvt"
main_input_name = "pixel_values"
TFCVT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TF 2.0 models accepts two formats as inputs:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional arguments.
This second option is useful when using [`tf.keras.Model.fit`] method which currently requires having all the
tensors in the first argument of the model call function: `model(inputs)`.
</Tip>
Args:
config ([`CvtConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
TFCVT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`np.ndarray`, `tf.Tensor`, `List[tf.Tensor]` ``Dict[str, tf.Tensor]` or `Dict[str, np.ndarray]` and each example must have the shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`CvtImageProcessor.__call__`]
for details.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False``):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare Cvt Model transformer outputting raw hidden-states without any specific head on top.",
TFCVT_START_DOCSTRING,
)
class TFCvtModel(TFCvtPreTrainedModel):
def __init__(self, config: CvtConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.cvt = TFCvtMainLayer(config, name="cvt")
@unpack_inputs
@add_start_docstrings_to_model_forward(TFCVT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBaseModelOutputWithCLSToken, config_class=_CONFIG_FOR_DOC)
def call(
self,
pixel_values: tf.Tensor | None = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithCLSToken, Tuple[tf.Tensor]]:
r"""
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, TFCvtModel
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("microsoft/cvt-13")
>>> model = TFCvtModel.from_pretrained("microsoft/cvt-13")
>>> inputs = image_processor(images=image, return_tensors="tf")
>>> outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
```"""
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
outputs = self.cvt(
pixel_values=pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
if not return_dict:
return (outputs[0],) + outputs[1:]
return TFBaseModelOutputWithCLSToken(
last_hidden_state=outputs.last_hidden_state,
cls_token_value=outputs.cls_token_value,
hidden_states=outputs.hidden_states,
)
@add_start_docstrings(
"""
Cvt Model transformer with an image classification head on top (a linear layer on top of the final hidden state of
the [CLS] token) e.g. for ImageNet.
""",
TFCVT_START_DOCSTRING,
)
class TFCvtForImageClassification(TFCvtPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config: CvtConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.cvt = TFCvtMainLayer(config, name="cvt")
# Using same default epsilon as in the original implementation.
self.layernorm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm")
# Classifier head
self.classifier = tf.keras.layers.Dense(
units=config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
use_bias=True,
bias_initializer="zeros",
name="classifier",
)
@unpack_inputs
@add_start_docstrings_to_model_forward(TFCVT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFImageClassifierOutputWithNoAttention, config_class=_CONFIG_FOR_DOC)
def call(
self,
pixel_values: tf.Tensor | None = None,
labels: tf.Tensor | None = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFImageClassifierOutputWithNoAttention, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, TFCvtForImageClassification
>>> import tensorflow as tf
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("microsoft/cvt-13")
>>> model = TFCvtForImageClassification.from_pretrained("microsoft/cvt-13")
>>> inputs = image_processor(images=image, return_tensors="tf")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_class_idx = tf.math.argmax(logits, axis=-1)[0]
>>> print("Predicted class:", model.config.id2label[int(predicted_class_idx)])
```"""
outputs = self.cvt(
pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
cls_token = outputs[1]
if self.config.cls_token[-1]:
sequence_output = self.layernorm(cls_token)
else:
# rearrange "batch_size, num_channels, height, width -> batch_size, (height*width), num_channels"
batch_size, num_channels, height, width = shape_list(sequence_output)
sequence_output = tf.reshape(sequence_output, shape=(batch_size, num_channels, height * width))
sequence_output = tf.transpose(sequence_output, perm=(0, 2, 1))
sequence_output = self.layernorm(sequence_output)
sequence_output_mean = tf.reduce_mean(sequence_output, axis=1)
logits = self.classifier(sequence_output_mean)
loss = None if labels is None else self.hf_compute_loss(labels=labels, logits=logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFImageClassifierOutputWithNoAttention(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
| 36,051 | 38.530702 | 200 | py |
transformers | transformers-main/src/transformers/models/cvt/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {"configuration_cvt": ["CVT_PRETRAINED_CONFIG_ARCHIVE_MAP", "CvtConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_cvt"] = [
"CVT_PRETRAINED_MODEL_ARCHIVE_LIST",
"CvtForImageClassification",
"CvtModel",
"CvtPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_cvt"] = [
"TF_CVT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFCvtForImageClassification",
"TFCvtModel",
"TFCvtPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_cvt import CVT_PRETRAINED_CONFIG_ARCHIVE_MAP, CvtConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_cvt import (
CVT_PRETRAINED_MODEL_ARCHIVE_LIST,
CvtForImageClassification,
CvtModel,
CvtPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_cvt import (
TF_CVT_PRETRAINED_MODEL_ARCHIVE_LIST,
TFCvtForImageClassification,
TFCvtModel,
TFCvtPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 2,434 | 28.695122 | 113 | py |
transformers | transformers-main/src/transformers/models/cvt/modeling_cvt.py | # coding=utf-8
# Copyright 2022 Microsoft Research and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch CvT model."""
import collections.abc
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import ImageClassifierOutputWithNoAttention, ModelOutput
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_cvt import CvtConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "CvtConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "microsoft/cvt-13"
_EXPECTED_OUTPUT_SHAPE = [1, 384, 14, 14]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "microsoft/cvt-13"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
CVT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"microsoft/cvt-13",
"microsoft/cvt-13-384",
"microsoft/cvt-13-384-22k",
"microsoft/cvt-21",
"microsoft/cvt-21-384",
"microsoft/cvt-21-384-22k",
# See all Cvt models at https://huggingface.co/models?filter=cvt
]
@dataclass
class BaseModelOutputWithCLSToken(ModelOutput):
"""
Base class for model's outputs, with potential hidden states and attentions.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
cls_token_value (`torch.FloatTensor` of shape `(batch_size, 1, hidden_size)`):
Classification token at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
"""
last_hidden_state: torch.FloatTensor = None
cls_token_value: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
# Copied from transformers.models.beit.modeling_beit.drop_path
def drop_path(input, drop_prob: float = 0.0, training: bool = False):
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output
# Copied from transformers.models.beit.modeling_beit.BeitDropPath
class CvtDropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""
def __init__(self, drop_prob: Optional[float] = None) -> None:
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
return drop_path(hidden_states, self.drop_prob, self.training)
def extra_repr(self) -> str:
return "p={}".format(self.drop_prob)
class CvtEmbeddings(nn.Module):
"""
Construct the CvT embeddings.
"""
def __init__(self, patch_size, num_channels, embed_dim, stride, padding, dropout_rate):
super().__init__()
self.convolution_embeddings = CvtConvEmbeddings(
patch_size=patch_size, num_channels=num_channels, embed_dim=embed_dim, stride=stride, padding=padding
)
self.dropout = nn.Dropout(dropout_rate)
def forward(self, pixel_values):
hidden_state = self.convolution_embeddings(pixel_values)
hidden_state = self.dropout(hidden_state)
return hidden_state
class CvtConvEmbeddings(nn.Module):
"""
Image to Conv Embedding.
"""
def __init__(self, patch_size, num_channels, embed_dim, stride, padding):
super().__init__()
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
self.patch_size = patch_size
self.projection = nn.Conv2d(num_channels, embed_dim, kernel_size=patch_size, stride=stride, padding=padding)
self.normalization = nn.LayerNorm(embed_dim)
def forward(self, pixel_values):
pixel_values = self.projection(pixel_values)
batch_size, num_channels, height, width = pixel_values.shape
hidden_size = height * width
# rearrange "b c h w -> b (h w) c"
pixel_values = pixel_values.view(batch_size, num_channels, hidden_size).permute(0, 2, 1)
if self.normalization:
pixel_values = self.normalization(pixel_values)
# rearrange "b (h w) c" -> b c h w"
pixel_values = pixel_values.permute(0, 2, 1).view(batch_size, num_channels, height, width)
return pixel_values
class CvtSelfAttentionConvProjection(nn.Module):
def __init__(self, embed_dim, kernel_size, padding, stride):
super().__init__()
self.convolution = nn.Conv2d(
embed_dim,
embed_dim,
kernel_size=kernel_size,
padding=padding,
stride=stride,
bias=False,
groups=embed_dim,
)
self.normalization = nn.BatchNorm2d(embed_dim)
def forward(self, hidden_state):
hidden_state = self.convolution(hidden_state)
hidden_state = self.normalization(hidden_state)
return hidden_state
class CvtSelfAttentionLinearProjection(nn.Module):
def forward(self, hidden_state):
batch_size, num_channels, height, width = hidden_state.shape
hidden_size = height * width
# rearrange " b c h w -> b (h w) c"
hidden_state = hidden_state.view(batch_size, num_channels, hidden_size).permute(0, 2, 1)
return hidden_state
class CvtSelfAttentionProjection(nn.Module):
def __init__(self, embed_dim, kernel_size, padding, stride, projection_method="dw_bn"):
super().__init__()
if projection_method == "dw_bn":
self.convolution_projection = CvtSelfAttentionConvProjection(embed_dim, kernel_size, padding, stride)
self.linear_projection = CvtSelfAttentionLinearProjection()
def forward(self, hidden_state):
hidden_state = self.convolution_projection(hidden_state)
hidden_state = self.linear_projection(hidden_state)
return hidden_state
class CvtSelfAttention(nn.Module):
def __init__(
self,
num_heads,
embed_dim,
kernel_size,
padding_q,
padding_kv,
stride_q,
stride_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
with_cls_token=True,
**kwargs,
):
super().__init__()
self.scale = embed_dim**-0.5
self.with_cls_token = with_cls_token
self.embed_dim = embed_dim
self.num_heads = num_heads
self.convolution_projection_query = CvtSelfAttentionProjection(
embed_dim,
kernel_size,
padding_q,
stride_q,
projection_method="linear" if qkv_projection_method == "avg" else qkv_projection_method,
)
self.convolution_projection_key = CvtSelfAttentionProjection(
embed_dim, kernel_size, padding_kv, stride_kv, projection_method=qkv_projection_method
)
self.convolution_projection_value = CvtSelfAttentionProjection(
embed_dim, kernel_size, padding_kv, stride_kv, projection_method=qkv_projection_method
)
self.projection_query = nn.Linear(embed_dim, embed_dim, bias=qkv_bias)
self.projection_key = nn.Linear(embed_dim, embed_dim, bias=qkv_bias)
self.projection_value = nn.Linear(embed_dim, embed_dim, bias=qkv_bias)
self.dropout = nn.Dropout(attention_drop_rate)
def rearrange_for_multi_head_attention(self, hidden_state):
batch_size, hidden_size, _ = hidden_state.shape
head_dim = self.embed_dim // self.num_heads
# rearrange 'b t (h d) -> b h t d'
return hidden_state.view(batch_size, hidden_size, self.num_heads, head_dim).permute(0, 2, 1, 3)
def forward(self, hidden_state, height, width):
if self.with_cls_token:
cls_token, hidden_state = torch.split(hidden_state, [1, height * width], 1)
batch_size, hidden_size, num_channels = hidden_state.shape
# rearrange "b (h w) c -> b c h w"
hidden_state = hidden_state.permute(0, 2, 1).view(batch_size, num_channels, height, width)
key = self.convolution_projection_key(hidden_state)
query = self.convolution_projection_query(hidden_state)
value = self.convolution_projection_value(hidden_state)
if self.with_cls_token:
query = torch.cat((cls_token, query), dim=1)
key = torch.cat((cls_token, key), dim=1)
value = torch.cat((cls_token, value), dim=1)
head_dim = self.embed_dim // self.num_heads
query = self.rearrange_for_multi_head_attention(self.projection_query(query))
key = self.rearrange_for_multi_head_attention(self.projection_key(key))
value = self.rearrange_for_multi_head_attention(self.projection_value(value))
attention_score = torch.einsum("bhlk,bhtk->bhlt", [query, key]) * self.scale
attention_probs = torch.nn.functional.softmax(attention_score, dim=-1)
attention_probs = self.dropout(attention_probs)
context = torch.einsum("bhlt,bhtv->bhlv", [attention_probs, value])
# rearrange"b h t d -> b t (h d)"
_, _, hidden_size, _ = context.shape
context = context.permute(0, 2, 1, 3).contiguous().view(batch_size, hidden_size, self.num_heads * head_dim)
return context
class CvtSelfOutput(nn.Module):
"""
The residual connection is defined in CvtLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, embed_dim, drop_rate):
super().__init__()
self.dense = nn.Linear(embed_dim, embed_dim)
self.dropout = nn.Dropout(drop_rate)
def forward(self, hidden_state, input_tensor):
hidden_state = self.dense(hidden_state)
hidden_state = self.dropout(hidden_state)
return hidden_state
class CvtAttention(nn.Module):
def __init__(
self,
num_heads,
embed_dim,
kernel_size,
padding_q,
padding_kv,
stride_q,
stride_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
drop_rate,
with_cls_token=True,
):
super().__init__()
self.attention = CvtSelfAttention(
num_heads,
embed_dim,
kernel_size,
padding_q,
padding_kv,
stride_q,
stride_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
with_cls_token,
)
self.output = CvtSelfOutput(embed_dim, drop_rate)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.attention.num_attention_heads, self.attention.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(heads)
self.attention.all_head_size = self.attention.attention_head_size * self.attention.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(self, hidden_state, height, width):
self_output = self.attention(hidden_state, height, width)
attention_output = self.output(self_output, hidden_state)
return attention_output
class CvtIntermediate(nn.Module):
def __init__(self, embed_dim, mlp_ratio):
super().__init__()
self.dense = nn.Linear(embed_dim, int(embed_dim * mlp_ratio))
self.activation = nn.GELU()
def forward(self, hidden_state):
hidden_state = self.dense(hidden_state)
hidden_state = self.activation(hidden_state)
return hidden_state
class CvtOutput(nn.Module):
def __init__(self, embed_dim, mlp_ratio, drop_rate):
super().__init__()
self.dense = nn.Linear(int(embed_dim * mlp_ratio), embed_dim)
self.dropout = nn.Dropout(drop_rate)
def forward(self, hidden_state, input_tensor):
hidden_state = self.dense(hidden_state)
hidden_state = self.dropout(hidden_state)
hidden_state = hidden_state + input_tensor
return hidden_state
class CvtLayer(nn.Module):
"""
CvtLayer composed by attention layers, normalization and multi-layer perceptrons (mlps).
"""
def __init__(
self,
num_heads,
embed_dim,
kernel_size,
padding_q,
padding_kv,
stride_q,
stride_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
drop_rate,
mlp_ratio,
drop_path_rate,
with_cls_token=True,
):
super().__init__()
self.attention = CvtAttention(
num_heads,
embed_dim,
kernel_size,
padding_q,
padding_kv,
stride_q,
stride_kv,
qkv_projection_method,
qkv_bias,
attention_drop_rate,
drop_rate,
with_cls_token,
)
self.intermediate = CvtIntermediate(embed_dim, mlp_ratio)
self.output = CvtOutput(embed_dim, mlp_ratio, drop_rate)
self.drop_path = CvtDropPath(drop_prob=drop_path_rate) if drop_path_rate > 0.0 else nn.Identity()
self.layernorm_before = nn.LayerNorm(embed_dim)
self.layernorm_after = nn.LayerNorm(embed_dim)
def forward(self, hidden_state, height, width):
self_attention_output = self.attention(
self.layernorm_before(hidden_state), # in Cvt, layernorm is applied before self-attention
height,
width,
)
attention_output = self_attention_output
attention_output = self.drop_path(attention_output)
# first residual connection
hidden_state = attention_output + hidden_state
# in Cvt, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_state)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_state)
layer_output = self.drop_path(layer_output)
return layer_output
class CvtStage(nn.Module):
def __init__(self, config, stage):
super().__init__()
self.config = config
self.stage = stage
if self.config.cls_token[self.stage]:
self.cls_token = nn.Parameter(torch.randn(1, 1, self.config.embed_dim[-1]))
self.embedding = CvtEmbeddings(
patch_size=config.patch_sizes[self.stage],
stride=config.patch_stride[self.stage],
num_channels=config.num_channels if self.stage == 0 else config.embed_dim[self.stage - 1],
embed_dim=config.embed_dim[self.stage],
padding=config.patch_padding[self.stage],
dropout_rate=config.drop_rate[self.stage],
)
drop_path_rates = [x.item() for x in torch.linspace(0, config.drop_path_rate[self.stage], config.depth[stage])]
self.layers = nn.Sequential(
*[
CvtLayer(
num_heads=config.num_heads[self.stage],
embed_dim=config.embed_dim[self.stage],
kernel_size=config.kernel_qkv[self.stage],
padding_q=config.padding_q[self.stage],
padding_kv=config.padding_kv[self.stage],
stride_kv=config.stride_kv[self.stage],
stride_q=config.stride_q[self.stage],
qkv_projection_method=config.qkv_projection_method[self.stage],
qkv_bias=config.qkv_bias[self.stage],
attention_drop_rate=config.attention_drop_rate[self.stage],
drop_rate=config.drop_rate[self.stage],
drop_path_rate=drop_path_rates[self.stage],
mlp_ratio=config.mlp_ratio[self.stage],
with_cls_token=config.cls_token[self.stage],
)
for _ in range(config.depth[self.stage])
]
)
def forward(self, hidden_state):
cls_token = None
hidden_state = self.embedding(hidden_state)
batch_size, num_channels, height, width = hidden_state.shape
# rearrange b c h w -> b (h w) c"
hidden_state = hidden_state.view(batch_size, num_channels, height * width).permute(0, 2, 1)
if self.config.cls_token[self.stage]:
cls_token = self.cls_token.expand(batch_size, -1, -1)
hidden_state = torch.cat((cls_token, hidden_state), dim=1)
for layer in self.layers:
layer_outputs = layer(hidden_state, height, width)
hidden_state = layer_outputs
if self.config.cls_token[self.stage]:
cls_token, hidden_state = torch.split(hidden_state, [1, height * width], 1)
hidden_state = hidden_state.permute(0, 2, 1).view(batch_size, num_channels, height, width)
return hidden_state, cls_token
class CvtEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.stages = nn.ModuleList([])
for stage_idx in range(len(config.depth)):
self.stages.append(CvtStage(config, stage_idx))
def forward(self, pixel_values, output_hidden_states=False, return_dict=True):
all_hidden_states = () if output_hidden_states else None
hidden_state = pixel_values
cls_token = None
for _, (stage_module) in enumerate(self.stages):
hidden_state, cls_token = stage_module(hidden_state)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_state,)
if not return_dict:
return tuple(v for v in [hidden_state, cls_token, all_hidden_states] if v is not None)
return BaseModelOutputWithCLSToken(
last_hidden_state=hidden_state,
cls_token_value=cls_token,
hidden_states=all_hidden_states,
)
class CvtPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = CvtConfig
base_model_prefix = "cvt"
main_input_name = "pixel_values"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
module.weight.data = nn.init.trunc_normal_(module.weight.data, mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, CvtStage):
if self.config.cls_token[module.stage]:
module.cls_token.data = nn.init.trunc_normal_(
torch.zeros(1, 1, self.config.embed_dim[-1]), mean=0.0, std=self.config.initializer_range
)
CVT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`CvtConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CVT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`CvtImageProcessor.__call__`]
for details.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Cvt Model transformer outputting raw hidden-states without any specific head on top.",
CVT_START_DOCSTRING,
)
class CvtModel(CvtPreTrainedModel):
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.encoder = CvtEncoder(config)
self.post_init()
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(CVT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithCLSToken,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithCLSToken]:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
encoder_outputs = self.encoder(
pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
if not return_dict:
return (sequence_output,) + encoder_outputs[1:]
return BaseModelOutputWithCLSToken(
last_hidden_state=sequence_output,
cls_token_value=encoder_outputs.cls_token_value,
hidden_states=encoder_outputs.hidden_states,
)
@add_start_docstrings(
"""
Cvt Model transformer with an image classification head on top (a linear layer on top of the final hidden state of
the [CLS] token) e.g. for ImageNet.
""",
CVT_START_DOCSTRING,
)
class CvtForImageClassification(CvtPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.cvt = CvtModel(config, add_pooling_layer=False)
self.layernorm = nn.LayerNorm(config.embed_dim[-1])
# Classifier head
self.classifier = (
nn.Linear(config.embed_dim[-1], config.num_labels) if config.num_labels > 0 else nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(CVT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=ImageClassifierOutputWithNoAttention,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, ImageClassifierOutputWithNoAttention]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.cvt(
pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
cls_token = outputs[1]
if self.config.cls_token[-1]:
sequence_output = self.layernorm(cls_token)
else:
batch_size, num_channels, height, width = sequence_output.shape
# rearrange "b c h w -> b (h w) c"
sequence_output = sequence_output.view(batch_size, num_channels, height * width).permute(0, 2, 1)
sequence_output = self.layernorm(sequence_output)
sequence_output_mean = sequence_output.mean(dim=1)
logits = self.classifier(sequence_output_mean)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.config.num_labels == 1:
self.config.problem_type = "regression"
elif self.config.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.config.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.config.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutputWithNoAttention(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
| 28,913 | 38.392371 | 159 | py |
transformers | transformers-main/src/transformers/models/deberta/modeling_tf_deberta.py | # coding=utf-8
# Copyright 2021 Microsoft and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 DeBERTa model."""
from __future__ import annotations
import math
from typing import Dict, Optional, Sequence, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "DebertaConfig"
_CHECKPOINT_FOR_DOC = "kamalkraj/deberta-base"
TF_DEBERTA_PRETRAINED_MODEL_ARCHIVE_LIST = [
"kamalkraj/deberta-base",
# See all DeBERTa models at https://huggingface.co/models?filter=DeBERTa
]
class TFDebertaContextPooler(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.pooler_hidden_size, name="dense")
self.dropout = TFDebertaStableDropout(config.pooler_dropout, name="dropout")
self.config = config
def call(self, hidden_states, training: bool = False):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
context_token = hidden_states[:, 0]
context_token = self.dropout(context_token, training=training)
pooled_output = self.dense(context_token)
pooled_output = get_tf_activation(self.config.pooler_hidden_act)(pooled_output)
return pooled_output
@property
def output_dim(self) -> int:
return self.config.hidden_size
class TFDebertaXSoftmax(tf.keras.layers.Layer):
"""
Masked Softmax which is optimized for saving memory
Args:
input (`tf.Tensor`): The input tensor that will apply softmax.
mask (`tf.Tensor`): The mask matrix where 0 indicate that element will be ignored in the softmax calculation.
dim (int): The dimension that will apply softmax
"""
def __init__(self, axis=-1, **kwargs):
super().__init__(**kwargs)
self.axis = axis
def call(self, inputs: tf.Tensor, mask: tf.Tensor):
rmask = tf.logical_not(tf.cast(mask, tf.bool))
output = tf.where(rmask, float("-inf"), inputs)
output = stable_softmax(output, self.axis)
output = tf.where(rmask, 0.0, output)
return output
class TFDebertaStableDropout(tf.keras.layers.Layer):
"""
Optimized dropout module for stabilizing the training
Args:
drop_prob (float): the dropout probabilities
"""
def __init__(self, drop_prob, **kwargs):
super().__init__(**kwargs)
self.drop_prob = drop_prob
@tf.custom_gradient
def xdropout(self, inputs):
"""
Applies dropout to the inputs, as vanilla dropout, but also scales the remaining elements up by 1/drop_prob.
"""
mask = tf.cast(
1
- tf.compat.v1.distributions.Bernoulli(probs=1.0 - self.drop_prob).sample(sample_shape=shape_list(inputs)),
tf.bool,
)
scale = tf.convert_to_tensor(1.0 / (1 - self.drop_prob), dtype=tf.float32)
if self.drop_prob > 0:
inputs = tf.where(mask, 0.0, inputs) * scale
def grad(upstream):
if self.drop_prob > 0:
return tf.where(mask, 0.0, upstream) * scale
else:
return upstream
return inputs, grad
def call(self, inputs: tf.Tensor, training: tf.Tensor = False):
if training:
return self.xdropout(inputs)
return inputs
class TFDebertaLayerNorm(tf.keras.layers.Layer):
"""LayerNorm module in the TF style (epsilon inside the square root)."""
def __init__(self, size, eps=1e-12, **kwargs):
super().__init__(**kwargs)
self.size = size
self.eps = eps
def build(self, input_shape):
self.gamma = self.add_weight(shape=[self.size], initializer=tf.ones_initializer(), name="weight")
self.beta = self.add_weight(shape=[self.size], initializer=tf.zeros_initializer(), name="bias")
return super().build(input_shape)
def call(self, x: tf.Tensor) -> tf.Tensor:
mean = tf.reduce_mean(x, axis=[-1], keepdims=True)
variance = tf.reduce_mean(tf.square(x - mean), axis=[-1], keepdims=True)
std = tf.math.sqrt(variance + self.eps)
return self.gamma * (x - mean) / std + self.beta
class TFDebertaSelfOutput(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.hidden_size, name="dense")
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = TFDebertaStableDropout(config.hidden_dropout_prob, name="dropout")
def call(self, hidden_states, input_tensor, training: bool = False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class TFDebertaAttention(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.self = TFDebertaDisentangledSelfAttention(config, name="self")
self.dense_output = TFDebertaSelfOutput(config, name="output")
self.config = config
def call(
self,
input_tensor: tf.Tensor,
attention_mask: tf.Tensor,
query_states: tf.Tensor = None,
relative_pos: tf.Tensor = None,
rel_embeddings: tf.Tensor = None,
output_attentions: bool = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
self_outputs = self.self(
hidden_states=input_tensor,
attention_mask=attention_mask,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
output_attentions=output_attentions,
training=training,
)
if query_states is None:
query_states = input_tensor
attention_output = self.dense_output(
hidden_states=self_outputs[0], input_tensor=query_states, training=training
)
output = (attention_output,) + self_outputs[1:]
return output
class TFDebertaIntermediate(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class TFDebertaOutput(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = TFDebertaStableDropout(config.hidden_dropout_prob, name="dropout")
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class TFDebertaLayer(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.attention = TFDebertaAttention(config, name="attention")
self.intermediate = TFDebertaIntermediate(config, name="intermediate")
self.bert_output = TFDebertaOutput(config, name="output")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
query_states: tf.Tensor = None,
relative_pos: tf.Tensor = None,
rel_embeddings: tf.Tensor = None,
output_attentions: bool = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
attention_outputs = self.attention(
input_tensor=hidden_states,
attention_mask=attention_mask,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
output_attentions=output_attentions,
training=training,
)
attention_output = attention_outputs[0]
intermediate_output = self.intermediate(hidden_states=attention_output)
layer_output = self.bert_output(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + attention_outputs[1:] # add attentions if we output them
return outputs
class TFDebertaEncoder(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.layer = [TFDebertaLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
self.relative_attention = getattr(config, "relative_attention", False)
self.config = config
if self.relative_attention:
self.max_relative_positions = getattr(config, "max_relative_positions", -1)
if self.max_relative_positions < 1:
self.max_relative_positions = config.max_position_embeddings
def build(self, input_shape):
if self.relative_attention:
self.rel_embeddings = self.add_weight(
name="rel_embeddings.weight",
shape=[self.max_relative_positions * 2, self.config.hidden_size],
initializer=get_initializer(self.config.initializer_range),
)
return super().build(input_shape)
def get_rel_embedding(self):
rel_embeddings = self.rel_embeddings if self.relative_attention else None
return rel_embeddings
def get_attention_mask(self, attention_mask):
if len(shape_list(attention_mask)) <= 2:
extended_attention_mask = tf.expand_dims(tf.expand_dims(attention_mask, 1), 2)
attention_mask = extended_attention_mask * tf.expand_dims(tf.squeeze(extended_attention_mask, -2), -1)
attention_mask = tf.cast(attention_mask, tf.uint8)
elif len(shape_list(attention_mask)) == 3:
attention_mask = tf.expand_dims(attention_mask, 1)
return attention_mask
def get_rel_pos(self, hidden_states, query_states=None, relative_pos=None):
if self.relative_attention and relative_pos is None:
q = shape_list(query_states)[-2] if query_states is not None else shape_list(hidden_states)[-2]
relative_pos = build_relative_position(q, shape_list(hidden_states)[-2])
return relative_pos
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
query_states: tf.Tensor = None,
relative_pos: tf.Tensor = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
attention_mask = self.get_attention_mask(attention_mask)
relative_pos = self.get_rel_pos(hidden_states, query_states, relative_pos)
if isinstance(hidden_states, Sequence):
next_kv = hidden_states[0]
else:
next_kv = hidden_states
rel_embeddings = self.get_rel_embedding()
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states=next_kv,
attention_mask=attention_mask,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if query_states is not None:
query_states = hidden_states
if isinstance(hidden_states, Sequence):
next_kv = hidden_states[i + 1] if i + 1 < len(self.layer) else None
else:
next_kv = hidden_states
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
def build_relative_position(query_size, key_size):
"""
Build relative position according to the query and key
We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key
\\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q -
P_k\\)
Args:
query_size (int): the length of query
key_size (int): the length of key
Return:
`tf.Tensor`: A tensor with shape [1, query_size, key_size]
"""
q_ids = tf.range(query_size, dtype=tf.int32)
k_ids = tf.range(key_size, dtype=tf.int32)
rel_pos_ids = q_ids[:, None] - tf.tile(tf.reshape(k_ids, [1, -1]), [query_size, 1])
rel_pos_ids = rel_pos_ids[:query_size, :]
rel_pos_ids = tf.expand_dims(rel_pos_ids, axis=0)
return tf.cast(rel_pos_ids, tf.int64)
def c2p_dynamic_expand(c2p_pos, query_layer, relative_pos):
shapes = [
shape_list(query_layer)[0],
shape_list(query_layer)[1],
shape_list(query_layer)[2],
shape_list(relative_pos)[-1],
]
return tf.broadcast_to(c2p_pos, shapes)
def p2c_dynamic_expand(c2p_pos, query_layer, key_layer):
shapes = [
shape_list(query_layer)[0],
shape_list(query_layer)[1],
shape_list(key_layer)[-2],
shape_list(key_layer)[-2],
]
return tf.broadcast_to(c2p_pos, shapes)
def pos_dynamic_expand(pos_index, p2c_att, key_layer):
shapes = shape_list(p2c_att)[:2] + [shape_list(pos_index)[-2], shape_list(key_layer)[-2]]
return tf.broadcast_to(pos_index, shapes)
def torch_gather(x, indices, gather_axis):
if gather_axis < 0:
gather_axis = tf.rank(x) + gather_axis
if gather_axis != tf.rank(x) - 1:
pre_roll = tf.rank(x) - 1 - gather_axis
permutation = tf.roll(tf.range(tf.rank(x)), pre_roll, axis=0)
x = tf.transpose(x, perm=permutation)
indices = tf.transpose(indices, perm=permutation)
else:
pre_roll = 0
flat_x = tf.reshape(x, (-1, tf.shape(x)[-1]))
flat_indices = tf.reshape(indices, (-1, tf.shape(indices)[-1]))
gathered = tf.gather(flat_x, flat_indices, batch_dims=1)
gathered = tf.reshape(gathered, tf.shape(indices))
if pre_roll != 0:
permutation = tf.roll(tf.range(tf.rank(x)), -pre_roll, axis=0)
gathered = tf.transpose(gathered, perm=permutation)
return gathered
class TFDebertaDisentangledSelfAttention(tf.keras.layers.Layer):
"""
Disentangled self-attention module
Parameters:
config (`str`):
A model config class instance with the configuration to build a new model. The schema is similar to
*BertConfig*, for more details, please refer [`DebertaConfig`]
"""
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.in_proj = tf.keras.layers.Dense(
self.all_head_size * 3,
kernel_initializer=get_initializer(config.initializer_range),
name="in_proj",
use_bias=False,
)
self.pos_att_type = config.pos_att_type if config.pos_att_type is not None else []
self.relative_attention = getattr(config, "relative_attention", False)
self.talking_head = getattr(config, "talking_head", False)
if self.talking_head:
self.head_logits_proj = tf.keras.layers.Dense(
self.num_attention_heads,
kernel_initializer=get_initializer(config.initializer_range),
name="head_logits_proj",
use_bias=False,
)
self.head_weights_proj = tf.keras.layers.Dense(
self.num_attention_heads,
kernel_initializer=get_initializer(config.initializer_range),
name="head_weights_proj",
use_bias=False,
)
self.softmax = TFDebertaXSoftmax(axis=-1)
if self.relative_attention:
self.max_relative_positions = getattr(config, "max_relative_positions", -1)
if self.max_relative_positions < 1:
self.max_relative_positions = config.max_position_embeddings
self.pos_dropout = TFDebertaStableDropout(config.hidden_dropout_prob, name="pos_dropout")
if "c2p" in self.pos_att_type:
self.pos_proj = tf.keras.layers.Dense(
self.all_head_size,
kernel_initializer=get_initializer(config.initializer_range),
name="pos_proj",
use_bias=False,
)
if "p2c" in self.pos_att_type:
self.pos_q_proj = tf.keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="pos_q_proj"
)
self.dropout = TFDebertaStableDropout(config.attention_probs_dropout_prob, name="dropout")
def build(self, input_shape):
self.q_bias = self.add_weight(
name="q_bias", shape=(self.all_head_size), initializer=tf.keras.initializers.Zeros()
)
self.v_bias = self.add_weight(
name="v_bias", shape=(self.all_head_size), initializer=tf.keras.initializers.Zeros()
)
return super().build(input_shape)
def transpose_for_scores(self, tensor: tf.Tensor) -> tf.Tensor:
shape = shape_list(tensor)[:-1] + [self.num_attention_heads, -1]
# Reshape from [batch_size, seq_length, all_head_size] to [batch_size, seq_length, num_attention_heads, attention_head_size]
tensor = tf.reshape(tensor=tensor, shape=shape)
# Transpose the tensor from [batch_size, seq_length, num_attention_heads, attention_head_size] to [batch_size, num_attention_heads, seq_length, attention_head_size]
return tf.transpose(tensor, perm=[0, 2, 1, 3])
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
query_states: tf.Tensor = None,
relative_pos: tf.Tensor = None,
rel_embeddings: tf.Tensor = None,
output_attentions: bool = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
"""
Call the module
Args:
hidden_states (`tf.Tensor`):
Input states to the module usually the output from previous layer, it will be the Q,K and V in
*Attention(Q,K,V)*
attention_mask (`tf.Tensor`):
An attention mask matrix of shape [*B*, *N*, *N*] where *B* is the batch size, *N* is the maximum
sequence length in which element [i,j] = *1* means the *i* th token in the input can attend to the *j*
th token.
return_att (`bool`, optional):
Whether return the attention matrix.
query_states (`tf.Tensor`, optional):
The *Q* state in *Attention(Q,K,V)*.
relative_pos (`tf.Tensor`):
The relative position encoding between the tokens in the sequence. It's of shape [*B*, *N*, *N*] with
values ranging in [*-max_relative_positions*, *max_relative_positions*].
rel_embeddings (`tf.Tensor`):
The embedding of relative distances. It's a tensor of shape [\\(2 \\times
\\text{max_relative_positions}\\), *hidden_size*].
"""
if query_states is None:
qp = self.in_proj(hidden_states) # .split(self.all_head_size, dim=-1)
query_layer, key_layer, value_layer = tf.split(
self.transpose_for_scores(qp), num_or_size_splits=3, axis=-1
)
else:
def linear(w, b, x):
out = tf.matmul(x, w, transpose_b=True)
if b is not None:
out += tf.transpose(b)
return out
ws = tf.split(
tf.transpose(self.in_proj.weight[0]), num_or_size_splits=self.num_attention_heads * 3, axis=0
)
qkvw = tf.TensorArray(dtype=tf.float32, size=3)
for k in tf.range(3):
qkvw_inside = tf.TensorArray(dtype=tf.float32, size=self.num_attention_heads)
for i in tf.range(self.num_attention_heads):
qkvw_inside = qkvw_inside.write(i, ws[i * 3 + k])
qkvw = qkvw.write(k, qkvw_inside.concat())
qkvb = [None] * 3
q = linear(qkvw[0], qkvb[0], query_states)
k = linear(qkvw[1], qkvb[1], hidden_states)
v = linear(qkvw[2], qkvb[2], hidden_states)
query_layer = self.transpose_for_scores(q)
key_layer = self.transpose_for_scores(k)
value_layer = self.transpose_for_scores(v)
query_layer = query_layer + self.transpose_for_scores(self.q_bias[None, None, :])
value_layer = value_layer + self.transpose_for_scores(self.v_bias[None, None, :])
rel_att = None
# Take the dot product between "query" and "key" to get the raw attention scores.
scale_factor = 1 + len(self.pos_att_type)
scale = math.sqrt(shape_list(query_layer)[-1] * scale_factor)
query_layer = query_layer / scale
attention_scores = tf.matmul(query_layer, tf.transpose(key_layer, [0, 1, 3, 2]))
if self.relative_attention:
rel_embeddings = self.pos_dropout(rel_embeddings, training=training)
rel_att = self.disentangled_att_bias(query_layer, key_layer, relative_pos, rel_embeddings, scale_factor)
if rel_att is not None:
attention_scores = attention_scores + rel_att
if self.talking_head:
attention_scores = tf.transpose(
self.head_logits_proj(tf.transpose(attention_scores, [0, 2, 3, 1])), [0, 3, 1, 2]
)
attention_probs = self.softmax(attention_scores, attention_mask)
attention_probs = self.dropout(attention_probs, training=training)
if self.talking_head:
attention_probs = tf.transpose(
self.head_weights_proj(tf.transpose(attention_probs, [0, 2, 3, 1])), [0, 3, 1, 2]
)
context_layer = tf.matmul(attention_probs, value_layer)
context_layer = tf.transpose(context_layer, [0, 2, 1, 3])
context_layer_shape = shape_list(context_layer)
# Set the final dimension here explicitly.
# Calling tf.reshape(context_layer, (*context_layer_shape[:-2], -1)) raises an error when executing
# the model in graph mode as context_layer is reshaped to (None, 7, None) and Dense layer in TFDebertaV2SelfOutput
# requires final input dimension to be defined
new_context_layer_shape = context_layer_shape[:-2] + [context_layer_shape[-2] * context_layer_shape[-1]]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
def disentangled_att_bias(self, query_layer, key_layer, relative_pos, rel_embeddings, scale_factor):
if relative_pos is None:
q = shape_list(query_layer)[-2]
relative_pos = build_relative_position(q, shape_list(key_layer)[-2])
shape_list_pos = shape_list(relative_pos)
if len(shape_list_pos) == 2:
relative_pos = tf.expand_dims(tf.expand_dims(relative_pos, 0), 0)
elif len(shape_list_pos) == 3:
relative_pos = tf.expand_dims(relative_pos, 1)
# bxhxqxk
elif len(shape_list_pos) != 4:
raise ValueError(f"Relative position ids must be of dim 2 or 3 or 4. {len(shape_list_pos)}")
att_span = tf.cast(
tf.minimum(
tf.maximum(shape_list(query_layer)[-2], shape_list(key_layer)[-2]), self.max_relative_positions
),
tf.int64,
)
rel_embeddings = tf.expand_dims(
rel_embeddings[self.max_relative_positions - att_span : self.max_relative_positions + att_span, :], 0
)
score = 0
# content->position
if "c2p" in self.pos_att_type:
pos_key_layer = self.pos_proj(rel_embeddings)
pos_key_layer = self.transpose_for_scores(pos_key_layer)
c2p_att = tf.matmul(query_layer, tf.transpose(pos_key_layer, [0, 1, 3, 2]))
c2p_pos = tf.clip_by_value(relative_pos + att_span, 0, att_span * 2 - 1)
c2p_att = torch_gather(c2p_att, c2p_dynamic_expand(c2p_pos, query_layer, relative_pos), -1)
score += c2p_att
# position->content
if "p2c" in self.pos_att_type:
pos_query_layer = self.pos_q_proj(rel_embeddings)
pos_query_layer = self.transpose_for_scores(pos_query_layer)
pos_query_layer /= tf.math.sqrt(tf.cast(shape_list(pos_query_layer)[-1] * scale_factor, dtype=tf.float32))
if shape_list(query_layer)[-2] != shape_list(key_layer)[-2]:
r_pos = build_relative_position(shape_list(key_layer)[-2], shape_list(key_layer)[-2])
else:
r_pos = relative_pos
p2c_pos = tf.clip_by_value(-r_pos + att_span, 0, att_span * 2 - 1)
p2c_att = tf.matmul(key_layer, tf.transpose(pos_query_layer, [0, 1, 3, 2]))
p2c_att = tf.transpose(
torch_gather(p2c_att, p2c_dynamic_expand(p2c_pos, query_layer, key_layer), -1), [0, 1, 3, 2]
)
if shape_list(query_layer)[-2] != shape_list(key_layer)[-2]:
pos_index = tf.expand_dims(relative_pos[:, :, :, 0], -1)
p2c_att = torch_gather(p2c_att, pos_dynamic_expand(pos_index, p2c_att, key_layer), -2)
score += p2c_att
return score
class TFDebertaEmbeddings(tf.keras.layers.Layer):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embedding_size = getattr(config, "embedding_size", config.hidden_size)
self.hidden_size = config.hidden_size
self.max_position_embeddings = config.max_position_embeddings
self.position_biased_input = getattr(config, "position_biased_input", True)
self.initializer_range = config.initializer_range
if self.embedding_size != config.hidden_size:
self.embed_proj = tf.keras.layers.Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
name="embed_proj",
use_bias=False,
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = TFDebertaStableDropout(config.hidden_dropout_prob, name="dropout")
def build(self, input_shape: tf.TensorShape):
with tf.name_scope("word_embeddings"):
self.weight = self.add_weight(
name="weight",
shape=[self.config.vocab_size, self.embedding_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("token_type_embeddings"):
if self.config.type_vocab_size > 0:
self.token_type_embeddings = self.add_weight(
name="embeddings",
shape=[self.config.type_vocab_size, self.embedding_size],
initializer=get_initializer(self.initializer_range),
)
else:
self.token_type_embeddings = None
with tf.name_scope("position_embeddings"):
if self.position_biased_input:
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
else:
self.position_embeddings = None
super().build(input_shape)
def call(
self,
input_ids: tf.Tensor = None,
position_ids: tf.Tensor = None,
token_type_ids: tf.Tensor = None,
inputs_embeds: tf.Tensor = None,
mask: tf.Tensor = None,
training: bool = False,
) -> tf.Tensor:
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (`tf.Tensor`): output embedding tensor.
"""
if input_ids is None and inputs_embeds is None:
raise ValueError("Need to provide either `input_ids` or `input_embeds`.")
if input_ids is not None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
if position_ids is None:
position_ids = tf.expand_dims(tf.range(start=0, limit=input_shape[-1]), axis=0)
final_embeddings = inputs_embeds
if self.position_biased_input:
position_embeds = tf.gather(params=self.position_embeddings, indices=position_ids)
final_embeddings += position_embeds
if self.config.type_vocab_size > 0:
token_type_embeds = tf.gather(params=self.token_type_embeddings, indices=token_type_ids)
final_embeddings += token_type_embeds
if self.embedding_size != self.hidden_size:
final_embeddings = self.embed_proj(final_embeddings)
final_embeddings = self.LayerNorm(final_embeddings)
if mask is not None:
if len(shape_list(mask)) != len(shape_list(final_embeddings)):
if len(shape_list(mask)) == 4:
mask = tf.squeeze(tf.squeeze(mask, axis=1), axis=1)
mask = tf.cast(tf.expand_dims(mask, axis=2), tf.float32)
final_embeddings = final_embeddings * mask
final_embeddings = self.dropout(final_embeddings, training=training)
return final_embeddings
class TFDebertaPredictionHeadTransform(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.embedding_size = getattr(config, "embedding_size", config.hidden_size)
self.dense = tf.keras.layers.Dense(
units=self.embedding_size,
kernel_initializer=get_initializer(config.initializer_range),
name="dense",
)
if isinstance(config.hidden_act, str):
self.transform_act_fn = get_tf_activation(config.hidden_act)
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class TFDebertaLMPredictionHead(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, input_embeddings: tf.keras.layers.Layer, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embedding_size = getattr(config, "embedding_size", config.hidden_size)
self.transform = TFDebertaPredictionHeadTransform(config, name="transform")
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.input_embeddings = input_embeddings
def build(self, input_shape: tf.TensorShape):
self.bias = self.add_weight(shape=(self.config.vocab_size,), initializer="zeros", trainable=True, name="bias")
super().build(input_shape)
def get_output_embeddings(self) -> tf.keras.layers.Layer:
return self.input_embeddings
def set_output_embeddings(self, value: tf.Variable):
self.input_embeddings.weight = value
self.input_embeddings.vocab_size = shape_list(value)[0]
def get_bias(self) -> Dict[str, tf.Variable]:
return {"bias": self.bias}
def set_bias(self, value: tf.Variable):
self.bias = value["bias"]
self.config.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.transform(hidden_states=hidden_states)
seq_length = shape_list(hidden_states)[1]
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, self.embedding_size])
hidden_states = tf.matmul(a=hidden_states, b=self.input_embeddings.weight, transpose_b=True)
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, seq_length, self.config.vocab_size])
hidden_states = tf.nn.bias_add(value=hidden_states, bias=self.bias)
return hidden_states
class TFDebertaOnlyMLMHead(tf.keras.layers.Layer):
def __init__(self, config: DebertaConfig, input_embeddings: tf.keras.layers.Layer, **kwargs):
super().__init__(**kwargs)
self.predictions = TFDebertaLMPredictionHead(config, input_embeddings, name="predictions")
def call(self, sequence_output: tf.Tensor) -> tf.Tensor:
prediction_scores = self.predictions(hidden_states=sequence_output)
return prediction_scores
# @keras_serializable
class TFDebertaMainLayer(tf.keras.layers.Layer):
config_class = DebertaConfig
def __init__(self, config: DebertaConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embeddings = TFDebertaEmbeddings(config, name="embeddings")
self.encoder = TFDebertaEncoder(config, name="encoder")
def get_input_embeddings(self) -> tf.keras.layers.Layer:
return self.embeddings
def set_input_embeddings(self, value: tf.Variable):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if attention_mask is None:
attention_mask = tf.fill(dims=input_shape, value=1)
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
mask=attention_mask,
training=training,
)
encoder_outputs = self.encoder(
hidden_states=embedding_output,
attention_mask=attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
if not return_dict:
return (sequence_output,) + encoder_outputs[1:]
return TFBaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TFDebertaPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DebertaConfig
base_model_prefix = "deberta"
DEBERTA_START_DOCSTRING = r"""
The DeBERTa model was proposed in [DeBERTa: Decoding-enhanced BERT with Disentangled
Attention](https://arxiv.org/abs/2006.03654) by Pengcheng He, Xiaodong Liu, Jianfeng Gao, Weizhu Chen. It's build
on top of BERT/RoBERTa with two improvements, i.e. disentangled attention and enhanced mask decoder. With those two
improvements, it out perform BERT/RoBERTa on a majority of tasks with 80GB pretraining data.
This model is also a [tf.keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`DebertaConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DEBERTA_INPUTS_DOCSTRING = r"""
Args:
input_ids (`np.ndarray`, `tf.Tensor`, `List[tf.Tensor]` ``Dict[str, tf.Tensor]` or `Dict[str, np.ndarray]` and each example must have the shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`np.ndarray` or `tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
inputs_embeds (`np.ndarray` or `tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert *input_ids* indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput``] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare DeBERTa Model transformer outputting raw hidden-states without any specific head on top.",
DEBERTA_START_DOCSTRING,
)
class TFDebertaModel(TFDebertaPreTrainedModel):
def __init__(self, config: DebertaConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.deberta = TFDebertaMainLayer(config, name="deberta")
@unpack_inputs
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
outputs = self.deberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
@add_start_docstrings("""DeBERTa Model with a `language modeling` head on top.""", DEBERTA_START_DOCSTRING)
class TFDebertaForMaskedLM(TFDebertaPreTrainedModel, TFMaskedLanguageModelingLoss):
def __init__(self, config: DebertaConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
if config.is_decoder:
logger.warning(
"If you want to use `TFDebertaForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.deberta = TFDebertaMainLayer(config, name="deberta")
self.mlm = TFDebertaOnlyMLMHead(config, input_embeddings=self.deberta.embeddings, name="cls")
def get_lm_head(self) -> tf.keras.layers.Layer:
return self.mlm.predictions
@unpack_inputs
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
"""
outputs = self.deberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.mlm(sequence_output=sequence_output, training=training)
loss = None if labels is None else self.hf_compute_loss(labels=labels, logits=prediction_scores)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFMaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DeBERTa Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
DEBERTA_START_DOCSTRING,
)
class TFDebertaForSequenceClassification(TFDebertaPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config: DebertaConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.deberta = TFDebertaMainLayer(config, name="deberta")
self.pooler = TFDebertaContextPooler(config, name="pooler")
drop_out = getattr(config, "cls_dropout", None)
drop_out = self.config.hidden_dropout_prob if drop_out is None else drop_out
self.dropout = TFDebertaStableDropout(drop_out, name="cls_dropout")
self.classifier = tf.keras.layers.Dense(
units=config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
name="classifier",
)
@unpack_inputs
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
outputs = self.deberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
pooled_output = self.pooler(sequence_output, training=training)
pooled_output = self.dropout(pooled_output, training=training)
logits = self.classifier(pooled_output)
loss = None if labels is None else self.hf_compute_loss(labels=labels, logits=logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DeBERTa Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
DEBERTA_START_DOCSTRING,
)
class TFDebertaForTokenClassification(TFDebertaPreTrainedModel, TFTokenClassificationLoss):
def __init__(self, config: DebertaConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.deberta = TFDebertaMainLayer(config, name="deberta")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
units=config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@unpack_inputs
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` or `np.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
outputs = self.deberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(inputs=sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels=labels, logits=logits)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
DeBERTa Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
DEBERTA_START_DOCSTRING,
)
class TFDebertaForQuestionAnswering(TFDebertaPreTrainedModel, TFQuestionAnsweringLoss):
def __init__(self, config: DebertaConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.deberta = TFDebertaMainLayer(config, name="deberta")
self.qa_outputs = tf.keras.layers.Dense(
units=config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="qa_outputs"
)
@unpack_inputs
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
start_positions: np.ndarray | tf.Tensor | None = None,
end_positions: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[TFQuestionAnsweringModelOutput, Tuple[tf.Tensor]]:
r"""
start_positions (`tf.Tensor` or `np.ndarray` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`tf.Tensor` or `np.ndarray` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
outputs = self.deberta(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.qa_outputs(inputs=sequence_output)
start_logits, end_logits = tf.split(value=logits, num_or_size_splits=2, axis=-1)
start_logits = tf.squeeze(input=start_logits, axis=-1)
end_logits = tf.squeeze(input=end_logits, axis=-1)
loss = None
if start_positions is not None and end_positions is not None:
labels = {"start_position": start_positions}
labels["end_position"] = end_positions
loss = self.hf_compute_loss(labels=labels, logits=(start_logits, end_logits))
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 60,370 | 41.1291 | 172 | py |
transformers | transformers-main/src/transformers/models/deberta/tokenization_deberta_fast.py | # coding=utf-8
# Copyright 2020 Microsoft and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fast Tokenization class for model DeBERTa."""
import json
from typing import TYPE_CHECKING, List, Optional, Tuple
from tokenizers import pre_tokenizers
from ...tokenization_utils_base import AddedToken, BatchEncoding
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_deberta import DebertaTokenizer
if TYPE_CHECKING:
from transformers.pipelines.conversational import Conversation
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"microsoft/deberta-base": "https://huggingface.co/microsoft/deberta-base/resolve/main/vocab.json",
"microsoft/deberta-large": "https://huggingface.co/microsoft/deberta-large/resolve/main/vocab.json",
"microsoft/deberta-xlarge": "https://huggingface.co/microsoft/deberta-xlarge/resolve/main/vocab.json",
"microsoft/deberta-base-mnli": "https://huggingface.co/microsoft/deberta-base-mnli/resolve/main/vocab.json",
"microsoft/deberta-large-mnli": "https://huggingface.co/microsoft/deberta-large-mnli/resolve/main/vocab.json",
"microsoft/deberta-xlarge-mnli": (
"https://huggingface.co/microsoft/deberta-xlarge-mnli/resolve/main/vocab.json"
),
},
"merges_file": {
"microsoft/deberta-base": "https://huggingface.co/microsoft/deberta-base/resolve/main/merges.txt",
"microsoft/deberta-large": "https://huggingface.co/microsoft/deberta-large/resolve/main/merges.txt",
"microsoft/deberta-xlarge": "https://huggingface.co/microsoft/deberta-xlarge/resolve/main/merges.txt",
"microsoft/deberta-base-mnli": "https://huggingface.co/microsoft/deberta-base-mnli/resolve/main/merges.txt",
"microsoft/deberta-large-mnli": "https://huggingface.co/microsoft/deberta-large-mnli/resolve/main/merges.txt",
"microsoft/deberta-xlarge-mnli": (
"https://huggingface.co/microsoft/deberta-xlarge-mnli/resolve/main/merges.txt"
),
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"microsoft/deberta-base": 512,
"microsoft/deberta-large": 512,
"microsoft/deberta-xlarge": 512,
"microsoft/deberta-base-mnli": 512,
"microsoft/deberta-large-mnli": 512,
"microsoft/deberta-xlarge-mnli": 512,
}
PRETRAINED_INIT_CONFIGURATION = {
"microsoft/deberta-base": {"do_lower_case": False},
"microsoft/deberta-large": {"do_lower_case": False},
}
class DebertaTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" DeBERTa tokenizer (backed by HuggingFace's *tokenizers* library). Based on byte-level
Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import DebertaTokenizerFast
>>> tokenizer = DebertaTokenizerFast.from_pretrained("microsoft/deberta-base")
>>> tokenizer("Hello world")["input_ids"]
[1, 31414, 232, 2]
>>> tokenizer(" Hello world")["input_ids"]
[1, 20920, 232, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer, but since
the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer needs to be instantiated with `add_prefix_space=True`.
</Tip>
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
tokenizer_file (`str`, *optional*):
The path to a tokenizer file to use instead of the vocab file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"[CLS]"`):
The beginning of sequence token.
eos_token (`str`, *optional*, defaults to `"[SEP]"`):
The end of sequence token.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"[UNK]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (Deberta tokenizer detect beginning of words by the preceding space).
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask", "token_type_ids"]
slow_tokenizer_class = DebertaTokenizer
def __init__(
self,
vocab_file=None,
merges_file=None,
tokenizer_file=None,
errors="replace",
bos_token="[CLS]",
eos_token="[SEP]",
sep_token="[SEP]",
cls_token="[CLS]",
unk_token="[UNK]",
pad_token="[PAD]",
mask_token="[MASK]",
add_prefix_space=False,
**kwargs,
):
super().__init__(
vocab_file,
merges_file,
tokenizer_file=tokenizer_file,
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
**kwargs,
)
self.add_bos_token = kwargs.pop("add_bos_token", False)
pre_tok_state = json.loads(self.backend_tokenizer.pre_tokenizer.__getstate__())
if pre_tok_state.get("add_prefix_space", add_prefix_space) != add_prefix_space:
pre_tok_class = getattr(pre_tokenizers, pre_tok_state.pop("type"))
pre_tok_state["add_prefix_space"] = add_prefix_space
self.backend_tokenizer.pre_tokenizer = pre_tok_class(**pre_tok_state)
self.add_prefix_space = add_prefix_space
@property
def mask_token(self) -> str:
"""
`str`: Mask token, to use when training a model with masked-language modeling. Log an error if used while not
having been set.
Deberta tokenizer has a special mask token to be used in the fill-mask pipeline. The mask token will greedily
comprise the space before the *[MASK]*.
"""
if self._mask_token is None:
if self.verbose:
logger.error("Using mask_token, but it is not set yet.")
return None
return str(self._mask_token)
@mask_token.setter
def mask_token(self, value):
"""
Overriding the default behavior of the mask token to have it eat the space before it.
"""
# Mask token behave like a normal word, i.e. include the space before it
# So we set lstrip to True
value = AddedToken(value, lstrip=True, rstrip=False) if isinstance(value, str) else value
self._mask_token = value
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A DeBERTa sequence has the following format:
- single sequence: [CLS] X [SEP]
- pair of sequences: [CLS] A [SEP] B [SEP]
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + token_ids_1 + sep
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A DeBERTa
sequence pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
# Copied from transformers.models.gpt2.tokenization_gpt2_fast.GPT2TokenizerFast._batch_encode_plus
def _batch_encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
assert self.add_prefix_space or not is_split_into_words, (
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._batch_encode_plus(*args, **kwargs)
# Copied from transformers.models.gpt2.tokenization_gpt2_fast.GPT2TokenizerFast._encode_plus
def _encode_plus(self, *args, **kwargs) -> BatchEncoding:
is_split_into_words = kwargs.get("is_split_into_words", False)
assert self.add_prefix_space or not is_split_into_words, (
f"You need to instantiate {self.__class__.__name__} with add_prefix_space=True "
"to use it with pretokenized inputs."
)
return super()._encode_plus(*args, **kwargs)
# Copied from transformers.models.gpt2.tokenization_gpt2_fast.GPT2TokenizerFast.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
# Copied from transformers.models.gpt2.tokenization_gpt2_fast.GPT2TokenizerFast._build_conversation_input_ids
def _build_conversation_input_ids(self, conversation: "Conversation") -> List[int]:
"""This corresponds to DialoGPT variants of models."""
input_ids = []
for is_user, text in conversation.iter_texts():
input_ids.extend(self.encode(text, add_special_tokens=False) + [self.eos_token_id])
if len(input_ids) > self.model_max_length:
input_ids = input_ids[-self.model_max_length :]
return input_ids
| 13,437 | 43.496689 | 119 | py |
transformers | transformers-main/src/transformers/models/deberta/configuration_deberta.py | # coding=utf-8
# Copyright 2020, Microsoft and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" DeBERTa model configuration"""
from collections import OrderedDict
from typing import TYPE_CHECKING, Any, Mapping, Optional, Union
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
if TYPE_CHECKING:
from ... import FeatureExtractionMixin, PreTrainedTokenizerBase, TensorType
logger = logging.get_logger(__name__)
DEBERTA_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"microsoft/deberta-base": "https://huggingface.co/microsoft/deberta-base/resolve/main/config.json",
"microsoft/deberta-large": "https://huggingface.co/microsoft/deberta-large/resolve/main/config.json",
"microsoft/deberta-xlarge": "https://huggingface.co/microsoft/deberta-xlarge/resolve/main/config.json",
"microsoft/deberta-base-mnli": "https://huggingface.co/microsoft/deberta-base-mnli/resolve/main/config.json",
"microsoft/deberta-large-mnli": "https://huggingface.co/microsoft/deberta-large-mnli/resolve/main/config.json",
"microsoft/deberta-xlarge-mnli": "https://huggingface.co/microsoft/deberta-xlarge-mnli/resolve/main/config.json",
}
class DebertaConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`DebertaModel`] or a [`TFDebertaModel`]. It is
used to instantiate a DeBERTa model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the DeBERTa
[microsoft/deberta-base](https://huggingface.co/microsoft/deberta-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Arguments:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the DeBERTa model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`DebertaModel`] or [`TFDebertaModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"`, `"gelu"`, `"tanh"`, `"gelu_fast"`, `"mish"`, `"linear"`, `"sigmoid"` and `"gelu_new"`
are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`DebertaModel`] or [`TFDebertaModel`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
relative_attention (`bool`, *optional*, defaults to `False`):
Whether use relative position encoding.
max_relative_positions (`int`, *optional*, defaults to 1):
The range of relative positions `[-max_position_embeddings, max_position_embeddings]`. Use the same value
as `max_position_embeddings`.
pad_token_id (`int`, *optional*, defaults to 0):
The value used to pad input_ids.
position_biased_input (`bool`, *optional*, defaults to `True`):
Whether add absolute position embedding to content embedding.
pos_att_type (`List[str]`, *optional*):
The type of relative position attention, it can be a combination of `["p2c", "c2p"]`, e.g. `["p2c"]`,
`["p2c", "c2p"]`.
layer_norm_eps (`float`, optional, defaults to 1e-12):
The epsilon used by the layer normalization layers.
Example:
```python
>>> from transformers import DebertaConfig, DebertaModel
>>> # Initializing a DeBERTa microsoft/deberta-base style configuration
>>> configuration = DebertaConfig()
>>> # Initializing a model (with random weights) from the microsoft/deberta-base style configuration
>>> model = DebertaModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "deberta"
def __init__(
self,
vocab_size=50265,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=0,
initializer_range=0.02,
layer_norm_eps=1e-7,
relative_attention=False,
max_relative_positions=-1,
pad_token_id=0,
position_biased_input=True,
pos_att_type=None,
pooler_dropout=0,
pooler_hidden_act="gelu",
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.relative_attention = relative_attention
self.max_relative_positions = max_relative_positions
self.pad_token_id = pad_token_id
self.position_biased_input = position_biased_input
# Backwards compatibility
if type(pos_att_type) == str:
pos_att_type = [x.strip() for x in pos_att_type.lower().split("|")]
self.pos_att_type = pos_att_type
self.vocab_size = vocab_size
self.layer_norm_eps = layer_norm_eps
self.pooler_hidden_size = kwargs.get("pooler_hidden_size", hidden_size)
self.pooler_dropout = pooler_dropout
self.pooler_hidden_act = pooler_hidden_act
# Copied from transformers.models.deberta_v2.configuration_deberta_v2.DebertaV2OnnxConfig
class DebertaOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
if self._config.type_vocab_size > 0:
return OrderedDict(
[("input_ids", dynamic_axis), ("attention_mask", dynamic_axis), ("token_type_ids", dynamic_axis)]
)
else:
return OrderedDict([("input_ids", dynamic_axis), ("attention_mask", dynamic_axis)])
@property
def default_onnx_opset(self) -> int:
return 12
def generate_dummy_inputs(
self,
preprocessor: Union["PreTrainedTokenizerBase", "FeatureExtractionMixin"],
batch_size: int = -1,
seq_length: int = -1,
num_choices: int = -1,
is_pair: bool = False,
framework: Optional["TensorType"] = None,
num_channels: int = 3,
image_width: int = 40,
image_height: int = 40,
tokenizer: "PreTrainedTokenizerBase" = None,
) -> Mapping[str, Any]:
dummy_inputs = super().generate_dummy_inputs(preprocessor=preprocessor, framework=framework)
if self._config.type_vocab_size == 0 and "token_type_ids" in dummy_inputs:
del dummy_inputs["token_type_ids"]
return dummy_inputs
| 9,389 | 46.18593 | 119 | py |
transformers | transformers-main/src/transformers/models/deberta/tokenization_deberta.py | # coding=utf-8
# Copyright 2020 Microsoft and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Tokenization class for model DeBERTa."""
import json
import os
from typing import TYPE_CHECKING, List, Optional, Tuple
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
if TYPE_CHECKING:
from transformers.pipelines.conversational import Conversation
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"microsoft/deberta-base": "https://huggingface.co/microsoft/deberta-base/resolve/main/vocab.json",
"microsoft/deberta-large": "https://huggingface.co/microsoft/deberta-large/resolve/main/vocab.json",
"microsoft/deberta-xlarge": "https://huggingface.co/microsoft/deberta-xlarge/resolve/main/vocab.json",
"microsoft/deberta-base-mnli": "https://huggingface.co/microsoft/deberta-base-mnli/resolve/main/vocab.json",
"microsoft/deberta-large-mnli": "https://huggingface.co/microsoft/deberta-large-mnli/resolve/main/vocab.json",
"microsoft/deberta-xlarge-mnli": (
"https://huggingface.co/microsoft/deberta-xlarge-mnli/resolve/main/vocab.json"
),
},
"merges_file": {
"microsoft/deberta-base": "https://huggingface.co/microsoft/deberta-base/resolve/main/merges.txt",
"microsoft/deberta-large": "https://huggingface.co/microsoft/deberta-large/resolve/main/merges.txt",
"microsoft/deberta-xlarge": "https://huggingface.co/microsoft/deberta-xlarge/resolve/main/merges.txt",
"microsoft/deberta-base-mnli": "https://huggingface.co/microsoft/deberta-base-mnli/resolve/main/merges.txt",
"microsoft/deberta-large-mnli": "https://huggingface.co/microsoft/deberta-large-mnli/resolve/main/merges.txt",
"microsoft/deberta-xlarge-mnli": (
"https://huggingface.co/microsoft/deberta-xlarge-mnli/resolve/main/merges.txt"
),
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"microsoft/deberta-base": 512,
"microsoft/deberta-large": 512,
"microsoft/deberta-xlarge": 512,
"microsoft/deberta-base-mnli": 512,
"microsoft/deberta-large-mnli": 512,
"microsoft/deberta-xlarge-mnli": 512,
}
PRETRAINED_INIT_CONFIGURATION = {
"microsoft/deberta-base": {"do_lower_case": False},
"microsoft/deberta-large": {"do_lower_case": False},
}
# Copied from transformers.models.gpt2.tokenization_gpt2.bytes_to_unicode
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on.
The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs))
# Copied from transformers.models.gpt2.tokenization_gpt2.get_pairs
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
class DebertaTokenizer(PreTrainedTokenizer):
"""
Construct a DeBERTa tokenizer. Based on byte-level Byte-Pair-Encoding.
This tokenizer has been trained to treat spaces like parts of the tokens (a bit like sentencepiece) so a word will
be encoded differently whether it is at the beginning of the sentence (without space) or not:
```python
>>> from transformers import DebertaTokenizer
>>> tokenizer = DebertaTokenizer.from_pretrained("microsoft/deberta-base")
>>> tokenizer("Hello world")["input_ids"]
[1, 31414, 232, 2]
>>> tokenizer(" Hello world")["input_ids"]
[1, 20920, 232, 2]
```
You can get around that behavior by passing `add_prefix_space=True` when instantiating this tokenizer or when you
call it on some text, but since the model was not pretrained this way, it might yield a decrease in performance.
<Tip>
When used with `is_split_into_words=True`, this tokenizer will add a space before each word (even the first one).
</Tip>
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
errors (`str`, *optional*, defaults to `"replace"`):
Paradigm to follow when decoding bytes to UTF-8. See
[bytes.decode](https://docs.python.org/3/library/stdtypes.html#bytes.decode) for more information.
bos_token (`str`, *optional*, defaults to `"[CLS]"`):
The beginning of sequence token.
eos_token (`str`, *optional*, defaults to `"[SEP]"`):
The end of sequence token.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (`str`, *optional*, defaults to `"[UNK]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (`str`, *optional*, defaults to `"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
add_prefix_space (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial space to the input. This allows to treat the leading word just as any
other word. (Deberta tokenizer detect beginning of words by the preceding space).
add_bos_token (`bool`, *optional*, defaults to `False`):
Whether or not to add an initial <|endoftext|> to the input. This allows to treat the leading word just as
any other word.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask", "token_type_ids"]
def __init__(
self,
vocab_file,
merges_file,
errors="replace",
bos_token="[CLS]",
eos_token="[SEP]",
sep_token="[SEP]",
cls_token="[CLS]",
unk_token="[UNK]",
pad_token="[PAD]",
mask_token="[MASK]",
add_prefix_space=False,
add_bos_token=False,
**kwargs,
):
bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
sep_token = AddedToken(sep_token, lstrip=False, rstrip=False) if isinstance(sep_token, str) else sep_token
cls_token = AddedToken(cls_token, lstrip=False, rstrip=False) if isinstance(cls_token, str) else cls_token
unk_token = AddedToken(unk_token, lstrip=False, rstrip=False) if isinstance(unk_token, str) else unk_token
pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
super().__init__(
errors=errors,
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
add_prefix_space=add_prefix_space,
add_bos_token=add_bos_token,
**kwargs,
)
self.add_bos_token = add_bos_token
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
self.errors = errors # how to handle errors in decoding
self.byte_encoder = bytes_to_unicode()
self.byte_decoder = {v: k for k, v in self.byte_encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
bpe_merges = merges_handle.read().split("\n")[1:-1]
bpe_merges = [tuple(merge.split()) for merge in bpe_merges]
self.bpe_ranks = dict(zip(bpe_merges, range(len(bpe_merges))))
self.cache = {}
self.add_prefix_space = add_prefix_space
# Should have added re.IGNORECASE so BPE merges can happen for capitalized versions of contractions
self.pat = re.compile(r"""'s|'t|'re|'ve|'m|'ll|'d| ?\p{L}+| ?\p{N}+| ?[^\s\p{L}\p{N}]+|\s+(?!\S)|\s+""")
@property
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer.vocab_size
def vocab_size(self):
return len(self.encoder)
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer.get_vocab
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer.bpe
def bpe(self, token):
if token in self.cache:
return self.cache[token]
word = tuple(token)
pairs = get_pairs(word)
if not pairs:
return token
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
self.cache[token] = word
return word
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A DeBERTa sequence has the following format:
- single sequence: [CLS] X [SEP]
- pair of sequences: [CLS] A [SEP] B [SEP]
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieves sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` or `encode_plus` methods.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A DeBERTa
sequence pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer._tokenize
def _tokenize(self, text):
"""Tokenize a string."""
bpe_tokens = []
for token in re.findall(self.pat, text):
token = "".join(
self.byte_encoder[b] for b in token.encode("utf-8")
) # Maps all our bytes to unicode strings, avoiding control tokens of the BPE (spaces in our case)
bpe_tokens.extend(bpe_token for bpe_token in self.bpe(token).split(" "))
return bpe_tokens
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer._convert_token_to_id
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer._convert_id_to_token
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index)
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
text = "".join(tokens)
text = bytearray([self.byte_decoder[c] for c in text]).decode("utf-8", errors=self.errors)
return text
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer.save_vocabulary
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
def prepare_for_tokenization(self, text, is_split_into_words=False, **kwargs):
add_prefix_space = kwargs.pop("add_prefix_space", self.add_prefix_space)
if (is_split_into_words or add_prefix_space) and (len(text) > 0 and not text[0].isspace()):
text = " " + text
return (text, kwargs)
# Copied from transformers.models.gpt2.tokenization_gpt2.GPT2Tokenizer._build_conversation_input_ids
def _build_conversation_input_ids(self, conversation: "Conversation") -> List[int]:
input_ids = []
for is_user, text in conversation.iter_texts():
input_ids.extend(self.encode(text, add_special_tokens=False) + [self.eos_token_id])
if len(input_ids) > self.model_max_length:
input_ids = input_ids[-self.model_max_length :]
return input_ids
| 19,797 | 43.489888 | 119 | py |
transformers | transformers-main/src/transformers/models/deberta/__init__.py | # Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_deberta": ["DEBERTA_PRETRAINED_CONFIG_ARCHIVE_MAP", "DebertaConfig", "DebertaOnnxConfig"],
"tokenization_deberta": ["DebertaTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_deberta_fast"] = ["DebertaTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_deberta"] = [
"DEBERTA_PRETRAINED_MODEL_ARCHIVE_LIST",
"DebertaForMaskedLM",
"DebertaForQuestionAnswering",
"DebertaForSequenceClassification",
"DebertaForTokenClassification",
"DebertaModel",
"DebertaPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_deberta"] = [
"TF_DEBERTA_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFDebertaForMaskedLM",
"TFDebertaForQuestionAnswering",
"TFDebertaForSequenceClassification",
"TFDebertaForTokenClassification",
"TFDebertaModel",
"TFDebertaPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_deberta import DEBERTA_PRETRAINED_CONFIG_ARCHIVE_MAP, DebertaConfig, DebertaOnnxConfig
from .tokenization_deberta import DebertaTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_deberta_fast import DebertaTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_deberta import (
DEBERTA_PRETRAINED_MODEL_ARCHIVE_LIST,
DebertaForMaskedLM,
DebertaForQuestionAnswering,
DebertaForSequenceClassification,
DebertaForTokenClassification,
DebertaModel,
DebertaPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_deberta import (
TF_DEBERTA_PRETRAINED_MODEL_ARCHIVE_LIST,
TFDebertaForMaskedLM,
TFDebertaForQuestionAnswering,
TFDebertaForSequenceClassification,
TFDebertaForTokenClassification,
TFDebertaModel,
TFDebertaPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 3,677 | 29.396694 | 113 | py |
transformers | transformers-main/src/transformers/models/deberta/modeling_deberta.py | # coding=utf-8
# Copyright 2020 Microsoft and the Hugging Face Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch DeBERTa model."""
from collections.abc import Sequence
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "DebertaConfig"
_CHECKPOINT_FOR_DOC = "microsoft/deberta-base"
# Masked LM docstring
_CHECKPOINT_FOR_MASKED_LM = "lsanochkin/deberta-large-feedback"
_MASKED_LM_EXPECTED_OUTPUT = "' Paris'"
_MASKED_LM_EXPECTED_LOSS = "0.54"
# QuestionAnswering docstring
_CHECKPOINT_FOR_QA = "Palak/microsoft_deberta-large_squad"
_QA_EXPECTED_OUTPUT = "' a nice puppet'"
_QA_EXPECTED_LOSS = 0.14
_QA_TARGET_START_INDEX = 12
_QA_TARGET_END_INDEX = 14
DEBERTA_PRETRAINED_MODEL_ARCHIVE_LIST = [
"microsoft/deberta-base",
"microsoft/deberta-large",
"microsoft/deberta-xlarge",
"microsoft/deberta-base-mnli",
"microsoft/deberta-large-mnli",
"microsoft/deberta-xlarge-mnli",
]
class ContextPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.pooler_hidden_size, config.pooler_hidden_size)
self.dropout = StableDropout(config.pooler_dropout)
self.config = config
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
context_token = hidden_states[:, 0]
context_token = self.dropout(context_token)
pooled_output = self.dense(context_token)
pooled_output = ACT2FN[self.config.pooler_hidden_act](pooled_output)
return pooled_output
@property
def output_dim(self):
return self.config.hidden_size
class XSoftmax(torch.autograd.Function):
"""
Masked Softmax which is optimized for saving memory
Args:
input (`torch.tensor`): The input tensor that will apply softmax.
mask (`torch.IntTensor`):
The mask matrix where 0 indicate that element will be ignored in the softmax calculation.
dim (int): The dimension that will apply softmax
Example:
```python
>>> import torch
>>> from transformers.models.deberta.modeling_deberta import XSoftmax
>>> # Make a tensor
>>> x = torch.randn([4, 20, 100])
>>> # Create a mask
>>> mask = (x > 0).int()
>>> # Specify the dimension to apply softmax
>>> dim = -1
>>> y = XSoftmax.apply(x, mask, dim)
```"""
@staticmethod
def forward(self, input, mask, dim):
self.dim = dim
rmask = ~(mask.to(torch.bool))
output = input.masked_fill(rmask, torch.tensor(torch.finfo(input.dtype).min))
output = torch.softmax(output, self.dim)
output.masked_fill_(rmask, 0)
self.save_for_backward(output)
return output
@staticmethod
def backward(self, grad_output):
(output,) = self.saved_tensors
inputGrad = softmax_backward_data(self, grad_output, output, self.dim, output)
return inputGrad, None, None
@staticmethod
def symbolic(g, self, mask, dim):
import torch.onnx.symbolic_helper as sym_help
from torch.onnx.symbolic_opset9 import masked_fill, softmax
mask_cast_value = g.op("Cast", mask, to_i=sym_help.cast_pytorch_to_onnx["Long"])
r_mask = g.op(
"Cast",
g.op("Sub", g.op("Constant", value_t=torch.tensor(1, dtype=torch.int64)), mask_cast_value),
to_i=sym_help.cast_pytorch_to_onnx["Bool"],
)
output = masked_fill(
g, self, r_mask, g.op("Constant", value_t=torch.tensor(torch.finfo(self.type().dtype()).min))
)
output = softmax(g, output, dim)
return masked_fill(g, output, r_mask, g.op("Constant", value_t=torch.tensor(0, dtype=torch.bool)))
class DropoutContext(object):
def __init__(self):
self.dropout = 0
self.mask = None
self.scale = 1
self.reuse_mask = True
def get_mask(input, local_context):
if not isinstance(local_context, DropoutContext):
dropout = local_context
mask = None
else:
dropout = local_context.dropout
dropout *= local_context.scale
mask = local_context.mask if local_context.reuse_mask else None
if dropout > 0 and mask is None:
mask = (1 - torch.empty_like(input).bernoulli_(1 - dropout)).to(torch.bool)
if isinstance(local_context, DropoutContext):
if local_context.mask is None:
local_context.mask = mask
return mask, dropout
class XDropout(torch.autograd.Function):
"""Optimized dropout function to save computation and memory by using mask operation instead of multiplication."""
@staticmethod
def forward(ctx, input, local_ctx):
mask, dropout = get_mask(input, local_ctx)
ctx.scale = 1.0 / (1 - dropout)
if dropout > 0:
ctx.save_for_backward(mask)
return input.masked_fill(mask, 0) * ctx.scale
else:
return input
@staticmethod
def backward(ctx, grad_output):
if ctx.scale > 1:
(mask,) = ctx.saved_tensors
return grad_output.masked_fill(mask, 0) * ctx.scale, None
else:
return grad_output, None
@staticmethod
def symbolic(g: torch._C.Graph, input: torch._C.Value, local_ctx: Union[float, DropoutContext]) -> torch._C.Value:
from torch.onnx import symbolic_opset12
dropout_p = local_ctx
if isinstance(local_ctx, DropoutContext):
dropout_p = local_ctx.dropout
# StableDropout only calls this function when training.
train = True
# TODO: We should check if the opset_version being used to export
# is > 12 here, but there's no good way to do that. As-is, if the
# opset_version < 12, export will fail with a CheckerError.
# Once https://github.com/pytorch/pytorch/issues/78391 is fixed, do something like:
# if opset_version < 12:
# return torch.onnx.symbolic_opset9.dropout(g, input, dropout_p, train)
return symbolic_opset12.dropout(g, input, dropout_p, train)
class StableDropout(nn.Module):
"""
Optimized dropout module for stabilizing the training
Args:
drop_prob (float): the dropout probabilities
"""
def __init__(self, drop_prob):
super().__init__()
self.drop_prob = drop_prob
self.count = 0
self.context_stack = None
def forward(self, x):
"""
Call the module
Args:
x (`torch.tensor`): The input tensor to apply dropout
"""
if self.training and self.drop_prob > 0:
return XDropout.apply(x, self.get_context())
return x
def clear_context(self):
self.count = 0
self.context_stack = None
def init_context(self, reuse_mask=True, scale=1):
if self.context_stack is None:
self.context_stack = []
self.count = 0
for c in self.context_stack:
c.reuse_mask = reuse_mask
c.scale = scale
def get_context(self):
if self.context_stack is not None:
if self.count >= len(self.context_stack):
self.context_stack.append(DropoutContext())
ctx = self.context_stack[self.count]
ctx.dropout = self.drop_prob
self.count += 1
return ctx
else:
return self.drop_prob
class DebertaLayerNorm(nn.Module):
"""LayerNorm module in the TF style (epsilon inside the square root)."""
def __init__(self, size, eps=1e-12):
super().__init__()
self.weight = nn.Parameter(torch.ones(size))
self.bias = nn.Parameter(torch.zeros(size))
self.variance_epsilon = eps
def forward(self, hidden_states):
input_type = hidden_states.dtype
hidden_states = hidden_states.float()
mean = hidden_states.mean(-1, keepdim=True)
variance = (hidden_states - mean).pow(2).mean(-1, keepdim=True)
hidden_states = (hidden_states - mean) / torch.sqrt(variance + self.variance_epsilon)
hidden_states = hidden_states.to(input_type)
y = self.weight * hidden_states + self.bias
return y
class DebertaSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = DebertaLayerNorm(config.hidden_size, config.layer_norm_eps)
self.dropout = StableDropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class DebertaAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = DisentangledSelfAttention(config)
self.output = DebertaSelfOutput(config)
self.config = config
def forward(
self,
hidden_states,
attention_mask,
output_attentions=False,
query_states=None,
relative_pos=None,
rel_embeddings=None,
):
self_output = self.self(
hidden_states,
attention_mask,
output_attentions,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
)
if output_attentions:
self_output, att_matrix = self_output
if query_states is None:
query_states = hidden_states
attention_output = self.output(self_output, query_states)
if output_attentions:
return (attention_output, att_matrix)
else:
return attention_output
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->Deberta
class DebertaIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class DebertaOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = DebertaLayerNorm(config.hidden_size, config.layer_norm_eps)
self.dropout = StableDropout(config.hidden_dropout_prob)
self.config = config
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class DebertaLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = DebertaAttention(config)
self.intermediate = DebertaIntermediate(config)
self.output = DebertaOutput(config)
def forward(
self,
hidden_states,
attention_mask,
query_states=None,
relative_pos=None,
rel_embeddings=None,
output_attentions=False,
):
attention_output = self.attention(
hidden_states,
attention_mask,
output_attentions=output_attentions,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
)
if output_attentions:
attention_output, att_matrix = attention_output
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
if output_attentions:
return (layer_output, att_matrix)
else:
return layer_output
class DebertaEncoder(nn.Module):
"""Modified BertEncoder with relative position bias support"""
def __init__(self, config):
super().__init__()
self.layer = nn.ModuleList([DebertaLayer(config) for _ in range(config.num_hidden_layers)])
self.relative_attention = getattr(config, "relative_attention", False)
if self.relative_attention:
self.max_relative_positions = getattr(config, "max_relative_positions", -1)
if self.max_relative_positions < 1:
self.max_relative_positions = config.max_position_embeddings
self.rel_embeddings = nn.Embedding(self.max_relative_positions * 2, config.hidden_size)
self.gradient_checkpointing = False
def get_rel_embedding(self):
rel_embeddings = self.rel_embeddings.weight if self.relative_attention else None
return rel_embeddings
def get_attention_mask(self, attention_mask):
if attention_mask.dim() <= 2:
extended_attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
attention_mask = extended_attention_mask * extended_attention_mask.squeeze(-2).unsqueeze(-1)
elif attention_mask.dim() == 3:
attention_mask = attention_mask.unsqueeze(1)
return attention_mask
def get_rel_pos(self, hidden_states, query_states=None, relative_pos=None):
if self.relative_attention and relative_pos is None:
q = query_states.size(-2) if query_states is not None else hidden_states.size(-2)
relative_pos = build_relative_position(q, hidden_states.size(-2), hidden_states.device)
return relative_pos
def forward(
self,
hidden_states,
attention_mask,
output_hidden_states=True,
output_attentions=False,
query_states=None,
relative_pos=None,
return_dict=True,
):
attention_mask = self.get_attention_mask(attention_mask)
relative_pos = self.get_rel_pos(hidden_states, query_states, relative_pos)
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
if isinstance(hidden_states, Sequence):
next_kv = hidden_states[0]
else:
next_kv = hidden_states
rel_embeddings = self.get_rel_embedding()
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
hidden_states = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
next_kv,
attention_mask,
query_states,
relative_pos,
rel_embeddings,
)
else:
hidden_states = layer_module(
next_kv,
attention_mask,
query_states=query_states,
relative_pos=relative_pos,
rel_embeddings=rel_embeddings,
output_attentions=output_attentions,
)
if output_attentions:
hidden_states, att_m = hidden_states
if query_states is not None:
query_states = hidden_states
if isinstance(hidden_states, Sequence):
next_kv = hidden_states[i + 1] if i + 1 < len(self.layer) else None
else:
next_kv = hidden_states
if output_attentions:
all_attentions = all_attentions + (att_m,)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
def build_relative_position(query_size, key_size, device):
"""
Build relative position according to the query and key
We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key
\\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q -
P_k\\)
Args:
query_size (int): the length of query
key_size (int): the length of key
Return:
`torch.LongTensor`: A tensor with shape [1, query_size, key_size]
"""
q_ids = torch.arange(query_size, dtype=torch.long, device=device)
k_ids = torch.arange(key_size, dtype=torch.long, device=device)
rel_pos_ids = q_ids[:, None] - k_ids.view(1, -1).repeat(query_size, 1)
rel_pos_ids = rel_pos_ids[:query_size, :]
rel_pos_ids = rel_pos_ids.unsqueeze(0)
return rel_pos_ids
@torch.jit.script
def c2p_dynamic_expand(c2p_pos, query_layer, relative_pos):
return c2p_pos.expand([query_layer.size(0), query_layer.size(1), query_layer.size(2), relative_pos.size(-1)])
@torch.jit.script
def p2c_dynamic_expand(c2p_pos, query_layer, key_layer):
return c2p_pos.expand([query_layer.size(0), query_layer.size(1), key_layer.size(-2), key_layer.size(-2)])
@torch.jit.script
def pos_dynamic_expand(pos_index, p2c_att, key_layer):
return pos_index.expand(p2c_att.size()[:2] + (pos_index.size(-2), key_layer.size(-2)))
class DisentangledSelfAttention(nn.Module):
"""
Disentangled self-attention module
Parameters:
config (`str`):
A model config class instance with the configuration to build a new model. The schema is similar to
*BertConfig*, for more details, please refer [`DebertaConfig`]
"""
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.in_proj = nn.Linear(config.hidden_size, self.all_head_size * 3, bias=False)
self.q_bias = nn.Parameter(torch.zeros((self.all_head_size), dtype=torch.float))
self.v_bias = nn.Parameter(torch.zeros((self.all_head_size), dtype=torch.float))
self.pos_att_type = config.pos_att_type if config.pos_att_type is not None else []
self.relative_attention = getattr(config, "relative_attention", False)
self.talking_head = getattr(config, "talking_head", False)
if self.talking_head:
self.head_logits_proj = nn.Linear(config.num_attention_heads, config.num_attention_heads, bias=False)
self.head_weights_proj = nn.Linear(config.num_attention_heads, config.num_attention_heads, bias=False)
if self.relative_attention:
self.max_relative_positions = getattr(config, "max_relative_positions", -1)
if self.max_relative_positions < 1:
self.max_relative_positions = config.max_position_embeddings
self.pos_dropout = StableDropout(config.hidden_dropout_prob)
if "c2p" in self.pos_att_type:
self.pos_proj = nn.Linear(config.hidden_size, self.all_head_size, bias=False)
if "p2c" in self.pos_att_type:
self.pos_q_proj = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = StableDropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, -1)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask,
output_attentions=False,
query_states=None,
relative_pos=None,
rel_embeddings=None,
):
"""
Call the module
Args:
hidden_states (`torch.FloatTensor`):
Input states to the module usually the output from previous layer, it will be the Q,K and V in
*Attention(Q,K,V)*
attention_mask (`torch.BoolTensor`):
An attention mask matrix of shape [*B*, *N*, *N*] where *B* is the batch size, *N* is the maximum
sequence length in which element [i,j] = *1* means the *i* th token in the input can attend to the *j*
th token.
output_attentions (`bool`, optional):
Whether return the attention matrix.
query_states (`torch.FloatTensor`, optional):
The *Q* state in *Attention(Q,K,V)*.
relative_pos (`torch.LongTensor`):
The relative position encoding between the tokens in the sequence. It's of shape [*B*, *N*, *N*] with
values ranging in [*-max_relative_positions*, *max_relative_positions*].
rel_embeddings (`torch.FloatTensor`):
The embedding of relative distances. It's a tensor of shape [\\(2 \\times
\\text{max_relative_positions}\\), *hidden_size*].
"""
if query_states is None:
qp = self.in_proj(hidden_states) # .split(self.all_head_size, dim=-1)
query_layer, key_layer, value_layer = self.transpose_for_scores(qp).chunk(3, dim=-1)
else:
def linear(w, b, x):
if b is not None:
return torch.matmul(x, w.t()) + b.t()
else:
return torch.matmul(x, w.t()) # + b.t()
ws = self.in_proj.weight.chunk(self.num_attention_heads * 3, dim=0)
qkvw = [torch.cat([ws[i * 3 + k] for i in range(self.num_attention_heads)], dim=0) for k in range(3)]
qkvb = [None] * 3
q = linear(qkvw[0], qkvb[0], query_states.to(dtype=qkvw[0].dtype))
k, v = [linear(qkvw[i], qkvb[i], hidden_states.to(dtype=qkvw[i].dtype)) for i in range(1, 3)]
query_layer, key_layer, value_layer = [self.transpose_for_scores(x) for x in [q, k, v]]
query_layer = query_layer + self.transpose_for_scores(self.q_bias[None, None, :])
value_layer = value_layer + self.transpose_for_scores(self.v_bias[None, None, :])
rel_att = None
# Take the dot product between "query" and "key" to get the raw attention scores.
scale_factor = 1 + len(self.pos_att_type)
scale = torch.sqrt(torch.tensor(query_layer.size(-1), dtype=torch.float) * scale_factor)
query_layer = query_layer / scale.to(dtype=query_layer.dtype)
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.relative_attention:
rel_embeddings = self.pos_dropout(rel_embeddings)
rel_att = self.disentangled_att_bias(query_layer, key_layer, relative_pos, rel_embeddings, scale_factor)
if rel_att is not None:
attention_scores = attention_scores + rel_att
# bxhxlxd
if self.talking_head:
attention_scores = self.head_logits_proj(attention_scores.permute(0, 2, 3, 1)).permute(0, 3, 1, 2)
attention_probs = XSoftmax.apply(attention_scores, attention_mask, -1)
attention_probs = self.dropout(attention_probs)
if self.talking_head:
attention_probs = self.head_weights_proj(attention_probs.permute(0, 2, 3, 1)).permute(0, 3, 1, 2)
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (-1,)
context_layer = context_layer.view(new_context_layer_shape)
if output_attentions:
return (context_layer, attention_probs)
else:
return context_layer
def disentangled_att_bias(self, query_layer, key_layer, relative_pos, rel_embeddings, scale_factor):
if relative_pos is None:
q = query_layer.size(-2)
relative_pos = build_relative_position(q, key_layer.size(-2), query_layer.device)
if relative_pos.dim() == 2:
relative_pos = relative_pos.unsqueeze(0).unsqueeze(0)
elif relative_pos.dim() == 3:
relative_pos = relative_pos.unsqueeze(1)
# bxhxqxk
elif relative_pos.dim() != 4:
raise ValueError(f"Relative position ids must be of dim 2 or 3 or 4. {relative_pos.dim()}")
att_span = min(max(query_layer.size(-2), key_layer.size(-2)), self.max_relative_positions)
relative_pos = relative_pos.long().to(query_layer.device)
rel_embeddings = rel_embeddings[
self.max_relative_positions - att_span : self.max_relative_positions + att_span, :
].unsqueeze(0)
score = 0
# content->position
if "c2p" in self.pos_att_type:
pos_key_layer = self.pos_proj(rel_embeddings)
pos_key_layer = self.transpose_for_scores(pos_key_layer)
c2p_att = torch.matmul(query_layer, pos_key_layer.transpose(-1, -2))
c2p_pos = torch.clamp(relative_pos + att_span, 0, att_span * 2 - 1)
c2p_att = torch.gather(c2p_att, dim=-1, index=c2p_dynamic_expand(c2p_pos, query_layer, relative_pos))
score += c2p_att
# position->content
if "p2c" in self.pos_att_type:
pos_query_layer = self.pos_q_proj(rel_embeddings)
pos_query_layer = self.transpose_for_scores(pos_query_layer)
pos_query_layer /= torch.sqrt(torch.tensor(pos_query_layer.size(-1), dtype=torch.float) * scale_factor)
if query_layer.size(-2) != key_layer.size(-2):
r_pos = build_relative_position(key_layer.size(-2), key_layer.size(-2), query_layer.device)
else:
r_pos = relative_pos
p2c_pos = torch.clamp(-r_pos + att_span, 0, att_span * 2 - 1)
p2c_att = torch.matmul(key_layer, pos_query_layer.transpose(-1, -2).to(dtype=key_layer.dtype))
p2c_att = torch.gather(
p2c_att, dim=-1, index=p2c_dynamic_expand(p2c_pos, query_layer, key_layer)
).transpose(-1, -2)
if query_layer.size(-2) != key_layer.size(-2):
pos_index = relative_pos[:, :, :, 0].unsqueeze(-1)
p2c_att = torch.gather(p2c_att, dim=-2, index=pos_dynamic_expand(pos_index, p2c_att, key_layer))
score += p2c_att
return score
class DebertaEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
pad_token_id = getattr(config, "pad_token_id", 0)
self.embedding_size = getattr(config, "embedding_size", config.hidden_size)
self.word_embeddings = nn.Embedding(config.vocab_size, self.embedding_size, padding_idx=pad_token_id)
self.position_biased_input = getattr(config, "position_biased_input", True)
if not self.position_biased_input:
self.position_embeddings = None
else:
self.position_embeddings = nn.Embedding(config.max_position_embeddings, self.embedding_size)
if config.type_vocab_size > 0:
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, self.embedding_size)
if self.embedding_size != config.hidden_size:
self.embed_proj = nn.Linear(self.embedding_size, config.hidden_size, bias=False)
self.LayerNorm = DebertaLayerNorm(config.hidden_size, config.layer_norm_eps)
self.dropout = StableDropout(config.hidden_dropout_prob)
self.config = config
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, mask=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, :seq_length]
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
if self.position_embeddings is not None:
position_embeddings = self.position_embeddings(position_ids.long())
else:
position_embeddings = torch.zeros_like(inputs_embeds)
embeddings = inputs_embeds
if self.position_biased_input:
embeddings += position_embeddings
if self.config.type_vocab_size > 0:
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings += token_type_embeddings
if self.embedding_size != self.config.hidden_size:
embeddings = self.embed_proj(embeddings)
embeddings = self.LayerNorm(embeddings)
if mask is not None:
if mask.dim() != embeddings.dim():
if mask.dim() == 4:
mask = mask.squeeze(1).squeeze(1)
mask = mask.unsqueeze(2)
mask = mask.to(embeddings.dtype)
embeddings = embeddings * mask
embeddings = self.dropout(embeddings)
return embeddings
class DebertaPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DebertaConfig
base_model_prefix = "deberta"
_keys_to_ignore_on_load_unexpected = ["position_embeddings"]
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, DebertaEncoder):
module.gradient_checkpointing = value
DEBERTA_START_DOCSTRING = r"""
The DeBERTa model was proposed in [DeBERTa: Decoding-enhanced BERT with Disentangled
Attention](https://arxiv.org/abs/2006.03654) by Pengcheng He, Xiaodong Liu, Jianfeng Gao, Weizhu Chen. It's build
on top of BERT/RoBERTa with two improvements, i.e. disentangled attention and enhanced mask decoder. With those two
improvements, it out perform BERT/RoBERTa on a majority of tasks with 80GB pretraining data.
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`DebertaConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DEBERTA_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert *input_ids* indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare DeBERTa Model transformer outputting raw hidden-states without any specific head on top.",
DEBERTA_START_DOCSTRING,
)
class DebertaModel(DebertaPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.embeddings = DebertaEmbeddings(config)
self.encoder = DebertaEncoder(config)
self.z_steps = 0
self.config = config
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, new_embeddings):
self.embeddings.word_embeddings = new_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError("The prune function is not implemented in DeBERTa model.")
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
embedding_output = self.embeddings(
input_ids=input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
mask=attention_mask,
inputs_embeds=inputs_embeds,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask,
output_hidden_states=True,
output_attentions=output_attentions,
return_dict=return_dict,
)
encoded_layers = encoder_outputs[1]
if self.z_steps > 1:
hidden_states = encoded_layers[-2]
layers = [self.encoder.layer[-1] for _ in range(self.z_steps)]
query_states = encoded_layers[-1]
rel_embeddings = self.encoder.get_rel_embedding()
attention_mask = self.encoder.get_attention_mask(attention_mask)
rel_pos = self.encoder.get_rel_pos(embedding_output)
for layer in layers[1:]:
query_states = layer(
hidden_states,
attention_mask,
output_attentions=False,
query_states=query_states,
relative_pos=rel_pos,
rel_embeddings=rel_embeddings,
)
encoded_layers.append(query_states)
sequence_output = encoded_layers[-1]
if not return_dict:
return (sequence_output,) + encoder_outputs[(1 if output_hidden_states else 2) :]
return BaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states if output_hidden_states else None,
attentions=encoder_outputs.attentions,
)
@add_start_docstrings("""DeBERTa Model with a `language modeling` head on top.""", DEBERTA_START_DOCSTRING)
class DebertaForMaskedLM(DebertaPreTrainedModel):
_tied_weights_keys = ["cls.predictions.decoder.weight", "cls.predictions.decoder.bias"]
def __init__(self, config):
super().__init__(config)
self.deberta = DebertaModel(config)
self.cls = DebertaOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_MASKED_LM,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="[MASK]",
expected_output=_MASKED_LM_EXPECTED_OUTPUT,
expected_loss=_MASKED_LM_EXPECTED_LOSS,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class DebertaPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.embedding_size = getattr(config, "embedding_size", config.hidden_size)
self.dense = nn.Linear(config.hidden_size, self.embedding_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(self.embedding_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class DebertaLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = DebertaPredictionHeadTransform(config)
self.embedding_size = getattr(config, "embedding_size", config.hidden_size)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(self.embedding_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
# copied from transformers.models.bert.BertOnlyMLMHead with bert -> deberta
class DebertaOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = DebertaLMPredictionHead(config)
def forward(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
@add_start_docstrings(
"""
DeBERTa Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
DEBERTA_START_DOCSTRING,
)
class DebertaForSequenceClassification(DebertaPreTrainedModel):
def __init__(self, config):
super().__init__(config)
num_labels = getattr(config, "num_labels", 2)
self.num_labels = num_labels
self.deberta = DebertaModel(config)
self.pooler = ContextPooler(config)
output_dim = self.pooler.output_dim
self.classifier = nn.Linear(output_dim, num_labels)
drop_out = getattr(config, "cls_dropout", None)
drop_out = self.config.hidden_dropout_prob if drop_out is None else drop_out
self.dropout = StableDropout(drop_out)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.deberta.get_input_embeddings()
def set_input_embeddings(self, new_embeddings):
self.deberta.set_input_embeddings(new_embeddings)
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deberta(
input_ids,
token_type_ids=token_type_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
encoder_layer = outputs[0]
pooled_output = self.pooler(encoder_layer)
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
# regression task
loss_fn = nn.MSELoss()
logits = logits.view(-1).to(labels.dtype)
loss = loss_fn(logits, labels.view(-1))
elif labels.dim() == 1 or labels.size(-1) == 1:
label_index = (labels >= 0).nonzero()
labels = labels.long()
if label_index.size(0) > 0:
labeled_logits = torch.gather(
logits, 0, label_index.expand(label_index.size(0), logits.size(1))
)
labels = torch.gather(labels, 0, label_index.view(-1))
loss_fct = CrossEntropyLoss()
loss = loss_fct(labeled_logits.view(-1, self.num_labels).float(), labels.view(-1))
else:
loss = torch.tensor(0).to(logits)
else:
log_softmax = nn.LogSoftmax(-1)
loss = -((log_softmax(logits) * labels).sum(-1)).mean()
elif self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions
)
@add_start_docstrings(
"""
DeBERTa Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
DEBERTA_START_DOCSTRING,
)
class DebertaForTokenClassification(DebertaPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.deberta = DebertaModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions
)
@add_start_docstrings(
"""
DeBERTa Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
DEBERTA_START_DOCSTRING,
)
class DebertaForQuestionAnswering(DebertaPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.deberta = DebertaModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DEBERTA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_QA,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
expected_output=_QA_EXPECTED_OUTPUT,
expected_loss=_QA_EXPECTED_LOSS,
qa_target_start_index=_QA_TARGET_START_INDEX,
qa_target_end_index=_QA_TARGET_END_INDEX,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
start_positions: Optional[torch.Tensor] = None,
end_positions: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.deberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[1:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 58,332 | 39.424809 | 119 | py |
transformers | transformers-main/src/transformers/models/poolformer/feature_extraction_poolformer.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for PoolFormer."""
import warnings
from ...utils import logging
from .image_processing_poolformer import PoolFormerImageProcessor
logger = logging.get_logger(__name__)
class PoolFormerFeatureExtractor(PoolFormerImageProcessor):
def __init__(self, *args, **kwargs) -> None:
warnings.warn(
"The class PoolFormerFeatureExtractor is deprecated and will be removed in version 5 of Transformers."
" Please use PoolFormerImageProcessor instead.",
FutureWarning,
)
super().__init__(*args, **kwargs)
| 1,214 | 34.735294 | 114 | py |
transformers | transformers-main/src/transformers/models/poolformer/configuration_poolformer.py | # coding=utf-8
# Copyright 2022 Sea AI Labs and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PoolFormer model configuration"""
from collections import OrderedDict
from typing import Mapping
from packaging import version
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
POOLFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"sail/poolformer_s12": "https://huggingface.co/sail/poolformer_s12/resolve/main/config.json",
# See all PoolFormer models at https://huggingface.co/models?filter=poolformer
}
class PoolFormerConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of [`PoolFormerModel`]. It is used to instantiate a
PoolFormer model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the PoolFormer
[sail/poolformer_s12](https://huggingface.co/sail/poolformer_s12) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
num_channels (`int`, *optional*, defaults to 3):
The number of channels in the input image.
patch_size (`int`, *optional*, defaults to 16):
The size of the input patch.
stride (`int`, *optional*, defaults to 16):
The stride of the input patch.
pool_size (`int`, *optional*, defaults to 3):
The size of the pooling window.
mlp_ratio (`float`, *optional*, defaults to 4.0):
The ratio of the number of channels in the output of the MLP to the number of channels in the input.
depths (`list`, *optional*, defaults to `[2, 2, 6, 2]`):
The depth of each encoder block.
hidden_sizes (`list`, *optional*, defaults to `[64, 128, 320, 512]`):
The hidden sizes of each encoder block.
patch_sizes (`list`, *optional*, defaults to `[7, 3, 3, 3]`):
The size of the input patch for each encoder block.
strides (`list`, *optional*, defaults to `[4, 2, 2, 2]`):
The stride of the input patch for each encoder block.
padding (`list`, *optional*, defaults to `[2, 1, 1, 1]`):
The padding of the input patch for each encoder block.
num_encoder_blocks (`int`, *optional*, defaults to 4):
The number of encoder blocks.
drop_path_rate (`float`, *optional*, defaults to 0.0):
The dropout rate for the dropout layers.
hidden_act (`str`, *optional*, defaults to `"gelu"`):
The activation function for the hidden layers.
use_layer_scale (`bool`, *optional*, defaults to `True`):
Whether to use layer scale.
layer_scale_init_value (`float`, *optional*, defaults to 1e-5):
The initial value for the layer scale.
initializer_range (`float`, *optional*, defaults to 0.02):
The initializer range for the weights.
Example:
```python
>>> from transformers import PoolFormerConfig, PoolFormerModel
>>> # Initializing a PoolFormer sail/poolformer_s12 style configuration
>>> configuration = PoolFormerConfig()
>>> # Initializing a model (with random weights) from the sail/poolformer_s12 style configuration
>>> model = PoolFormerModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```
"""
model_type = "poolformer"
def __init__(
self,
num_channels=3,
patch_size=16,
stride=16,
pool_size=3,
mlp_ratio=4.0,
depths=[2, 2, 6, 2],
hidden_sizes=[64, 128, 320, 512],
patch_sizes=[7, 3, 3, 3],
strides=[4, 2, 2, 2],
padding=[2, 1, 1, 1],
num_encoder_blocks=4,
drop_path_rate=0.0,
hidden_act="gelu",
use_layer_scale=True,
layer_scale_init_value=1e-5,
initializer_range=0.02,
**kwargs,
):
self.num_channels = num_channels
self.patch_size = patch_size
self.stride = stride
self.padding = padding
self.pool_size = pool_size
self.hidden_sizes = hidden_sizes
self.mlp_ratio = mlp_ratio
self.depths = depths
self.patch_sizes = patch_sizes
self.strides = strides
self.num_encoder_blocks = num_encoder_blocks
self.drop_path_rate = drop_path_rate
self.hidden_act = hidden_act
self.use_layer_scale = use_layer_scale
self.layer_scale_init_value = layer_scale_init_value
self.initializer_range = initializer_range
super().__init__(**kwargs)
class PoolFormerOnnxConfig(OnnxConfig):
torch_onnx_minimum_version = version.parse("1.11")
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
return OrderedDict(
[
("pixel_values", {0: "batch", 1: "num_channels", 2: "height", 3: "width"}),
]
)
@property
def atol_for_validation(self) -> float:
return 2e-3
| 5,802 | 37.946309 | 114 | py |
transformers | transformers-main/src/transformers/models/poolformer/__init__.py | # Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_poolformer": [
"POOLFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP",
"PoolFormerConfig",
"PoolFormerOnnxConfig",
]
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_poolformer"] = ["PoolFormerFeatureExtractor"]
_import_structure["image_processing_poolformer"] = ["PoolFormerImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_poolformer"] = [
"POOLFORMER_PRETRAINED_MODEL_ARCHIVE_LIST",
"PoolFormerForImageClassification",
"PoolFormerModel",
"PoolFormerPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_poolformer import (
POOLFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP,
PoolFormerConfig,
PoolFormerOnnxConfig,
)
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_poolformer import PoolFormerFeatureExtractor
from .image_processing_poolformer import PoolFormerImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_poolformer import (
POOLFORMER_PRETRAINED_MODEL_ARCHIVE_LIST,
PoolFormerForImageClassification,
PoolFormerModel,
PoolFormerPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 2,586 | 29.797619 | 105 | py |
transformers | transformers-main/src/transformers/models/poolformer/modeling_poolformer.py | # coding=utf-8
# Copyright 2022 Sea AI Lab and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch PoolFormer model."""
import collections.abc
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithNoAttention, ImageClassifierOutputWithNoAttention
from ...modeling_utils import PreTrainedModel
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_poolformer import PoolFormerConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "PoolFormerConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "sail/poolformer_s12"
_EXPECTED_OUTPUT_SHAPE = [1, 512, 7, 7]
# Image classification docstring
_IMAGE_CLASS_CHECKPOINT = "sail/poolformer_s12"
_IMAGE_CLASS_EXPECTED_OUTPUT = "tabby, tabby cat"
POOLFORMER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"sail/poolformer_s12",
# See all PoolFormer models at https://huggingface.co/models?filter=poolformer
]
# Copied from transformers.models.beit.modeling_beit.drop_path
def drop_path(input, drop_prob: float = 0.0, training: bool = False):
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output
# Copied from transformers.models.beit.modeling_beit.BeitDropPath with Beit->PoolFormer
class PoolFormerDropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""
def __init__(self, drop_prob: Optional[float] = None) -> None:
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
return drop_path(hidden_states, self.drop_prob, self.training)
def extra_repr(self) -> str:
return "p={}".format(self.drop_prob)
class PoolFormerEmbeddings(nn.Module):
"""
Construct Patch Embeddings.
"""
def __init__(self, hidden_size, num_channels, patch_size, stride, padding, norm_layer=None):
super().__init__()
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
stride = stride if isinstance(stride, collections.abc.Iterable) else (stride, stride)
padding = padding if isinstance(padding, collections.abc.Iterable) else (padding, padding)
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=stride, padding=padding)
self.norm = norm_layer(hidden_size) if norm_layer else nn.Identity()
def forward(self, pixel_values):
embeddings = self.projection(pixel_values)
embeddings = self.norm(embeddings)
return embeddings
class PoolFormerGroupNorm(nn.GroupNorm):
"""
Group Normalization with 1 group. Input: tensor in shape [B, C, H, W]
"""
def __init__(self, num_channels, **kwargs):
super().__init__(1, num_channels, **kwargs)
class PoolFormerPooling(nn.Module):
def __init__(self, pool_size):
super().__init__()
self.pool = nn.AvgPool2d(pool_size, stride=1, padding=pool_size // 2, count_include_pad=False)
def forward(self, hidden_states):
return self.pool(hidden_states) - hidden_states
class PoolFormerOutput(nn.Module):
def __init__(self, config, dropout_prob, hidden_size, intermediate_size):
super().__init__()
self.conv1 = nn.Conv2d(hidden_size, intermediate_size, 1)
self.conv2 = nn.Conv2d(intermediate_size, hidden_size, 1)
self.drop = PoolFormerDropPath(dropout_prob)
if isinstance(config.hidden_act, str):
self.act_fn = ACT2FN[config.hidden_act]
else:
self.act_fn = config.hidden_act
def forward(self, hidden_states):
hidden_states = self.conv1(hidden_states)
hidden_states = self.act_fn(hidden_states)
hidden_states = self.drop(hidden_states)
hidden_states = self.conv2(hidden_states)
hidden_states = self.drop(hidden_states)
return hidden_states
class PoolFormerLayer(nn.Module):
"""This corresponds to the 'PoolFormerBlock' class in the original implementation."""
def __init__(self, config, num_channels, pool_size, hidden_size, intermediate_size, drop_path):
super().__init__()
self.pooling = PoolFormerPooling(pool_size)
self.output = PoolFormerOutput(config, drop_path, hidden_size, intermediate_size)
self.before_norm = PoolFormerGroupNorm(num_channels)
self.after_norm = PoolFormerGroupNorm(num_channels)
# Useful for training neural nets
self.drop_path = PoolFormerDropPath(drop_path) if drop_path > 0.0 else nn.Identity()
self.use_layer_scale = config.use_layer_scale
if config.use_layer_scale:
self.layer_scale_1 = nn.Parameter(
config.layer_scale_init_value * torch.ones((num_channels)), requires_grad=True
)
self.layer_scale_2 = nn.Parameter(
config.layer_scale_init_value * torch.ones((num_channels)), requires_grad=True
)
def forward(self, hidden_states):
if self.use_layer_scale:
pooling_output = self.pooling(self.before_norm(hidden_states))
scaled_op = self.layer_scale_1.unsqueeze(-1).unsqueeze(-1) * pooling_output
# First residual connection
hidden_states = hidden_states + self.drop_path(scaled_op)
outputs = ()
layer_output = self.output(self.after_norm(hidden_states))
scaled_op = self.layer_scale_2.unsqueeze(-1).unsqueeze(-1) * layer_output
# Second residual connection
output = hidden_states + self.drop_path(scaled_op)
outputs = (output,) + outputs
return outputs
else:
pooling_output = self.drop_path(self.pooling(self.before_norm(hidden_states)))
# First residual connection
hidden_states = pooling_output + hidden_states
outputs = ()
# Second residual connection inside the PoolFormerOutput block
layer_output = self.drop_path(self.output(self.after_norm(hidden_states)))
output = hidden_states + layer_output
outputs = (output,) + outputs
return outputs
class PoolFormerEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
# stochastic depth decay rule
dpr = [x.item() for x in torch.linspace(0, config.drop_path_rate, sum(config.depths))]
# patch embeddings
embeddings = []
for i in range(config.num_encoder_blocks):
embeddings.append(
PoolFormerEmbeddings(
patch_size=config.patch_sizes[i],
stride=config.strides[i],
padding=config.padding[i],
num_channels=config.num_channels if i == 0 else config.hidden_sizes[i - 1],
hidden_size=config.hidden_sizes[i],
)
)
self.patch_embeddings = nn.ModuleList(embeddings)
# Transformer blocks
blocks = []
cur = 0
for i in range(config.num_encoder_blocks):
# each block consists of layers
layers = []
if i != 0:
cur += config.depths[i - 1]
for j in range(config.depths[i]):
layers.append(
PoolFormerLayer(
config,
num_channels=config.hidden_sizes[i],
pool_size=config.pool_size,
hidden_size=config.hidden_sizes[i],
intermediate_size=int(config.hidden_sizes[i] * config.mlp_ratio),
drop_path=dpr[cur + j],
)
)
blocks.append(nn.ModuleList(layers))
self.block = nn.ModuleList(blocks)
def forward(self, pixel_values, output_hidden_states=False, return_dict=True):
all_hidden_states = () if output_hidden_states else None
hidden_states = pixel_values
for idx, layers in enumerate(zip(self.patch_embeddings, self.block)):
embedding_layer, block_layer = layers
# Get patch embeddings from hidden_states
hidden_states = embedding_layer(hidden_states)
# Send the embeddings through the blocks
for _, blk in enumerate(block_layer):
layer_outputs = blk(hidden_states)
hidden_states = layer_outputs[0]
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states] if v is not None)
return BaseModelOutputWithNoAttention(last_hidden_state=hidden_states, hidden_states=all_hidden_states)
class PoolFormerPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = PoolFormerConfig
base_model_prefix = "poolformer"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, PoolFormerEncoder):
module.gradient_checkpointing = value
POOLFORMER_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`PoolFormerConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
POOLFORMER_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See
[`PoolFormerImageProcessor.__call__`] for details.
"""
@add_start_docstrings(
"The bare PoolFormer Model transformer outputting raw hidden-states without any specific head on top.",
POOLFORMER_START_DOCSTRING,
)
class PoolFormerModel(PoolFormerPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.encoder = PoolFormerEncoder(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.patch_embeddings
@add_start_docstrings_to_model_forward(POOLFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithNoAttention,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithNoAttention]:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
encoder_outputs = self.encoder(
pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
if not return_dict:
return (sequence_output, None) + encoder_outputs[1:]
return BaseModelOutputWithNoAttention(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
)
class PoolFormerFinalPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
def forward(self, hidden_states):
output = self.dense(hidden_states)
return output
@add_start_docstrings(
"""
PoolFormer Model transformer with an image classification head on top
""",
POOLFORMER_START_DOCSTRING,
)
class PoolFormerForImageClassification(PoolFormerPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.poolformer = PoolFormerModel(config)
# Final norm
self.norm = PoolFormerGroupNorm(config.hidden_sizes[-1])
# Classifier head
self.classifier = (
nn.Linear(config.hidden_sizes[-1], config.num_labels) if config.num_labels > 0 else nn.Identity()
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(POOLFORMER_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_IMAGE_CLASS_CHECKPOINT,
output_type=ImageClassifierOutputWithNoAttention,
config_class=_CONFIG_FOR_DOC,
expected_output=_IMAGE_CLASS_EXPECTED_OUTPUT,
)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, ImageClassifierOutputWithNoAttention]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the image classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.poolformer(
pixel_values,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(self.norm(sequence_output).mean([-2, -1]))
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutputWithNoAttention(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
| 18,074 | 38.638158 | 119 | py |
transformers | transformers-main/src/transformers/models/poolformer/image_processing_poolformer.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for PoolFormer."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
center_crop,
get_resize_output_image_size,
normalize,
rescale,
resize,
to_channel_dimension_format,
)
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
make_list_of_images,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, is_vision_available, logging
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
class PoolFormerImageProcessor(BaseImageProcessor):
r"""
Constructs a PoolFormer image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by
`do_resize` in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"shortest_edge": 224}`):
Size of the image after resizing. Can be overridden by `size` in the `preprocess` method. If crop_pct is
unset:
- size is `{"height": h, "width": w}`: the image is resized to `(h, w)`.
- size is `{"shortest_edge": s}`: the shortest edge of the image is resized to s whilst maintaining the
aspect ratio.
If crop_pct is set:
- size is `{"height": h, "width": w}`: the image is resized to `(int(floor(h/crop_pct)),
int(floor(w/crop_pct)))`
- size is `{"height": c, "width": c}`: the shortest edge of the image is resized to `int(floor(c/crop_pct)`
whilst maintaining the aspect ratio.
- size is `{"shortest_edge": c}`: the shortest edge of the image is resized to `int(floor(c/crop_pct)`
whilst maintaining the aspect ratio.
crop_pct (`float`, *optional*, defaults to `0.9`):
Percentage of the image to crop from the center. Can be overridden by `crop_pct` in the `preprocess`
method.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use if resizing the image. Can be overridden by `resample` in the `preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image. If the input size is smaller than `crop_size` along any edge, the image
is padded with 0's and then center cropped. Can be overridden by `do_center_crop` in the `preprocess`
method.
crop_size (`Dict[str, int]`, *optional*, defaults to `{"height": 224, "width": 224}`):
Size of the image after applying center crop. Only has an effect if `do_center_crop` is set to `True`. Can
be overridden by the `crop_size` parameter in the `preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Controls whether to normalize the image. Can be overridden by the `do_normalize` parameter in the
`preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
crop_pct: int = 0.9,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_center_crop: bool = True,
crop_size: Dict[str, int] = None,
rescale_factor: Union[int, float] = 1 / 255,
do_rescale: bool = True,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"shortest_edge": 224}
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else {"height": 224, "width": 224}
crop_size = get_size_dict(crop_size, param_name="crop_size")
self.do_resize = do_resize
self.size = size
self.crop_pct = crop_pct
self.resample = resample
self.do_center_crop = do_center_crop
self.crop_size = crop_size
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
crop_pct: Optional[float] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image.
If crop_pct is unset:
- size is `{"height": h, "width": w}`: the image is resized to `(h, w)`.
- size is `{"shortest_edge": s}`: the shortest edge of the image is resized to s whilst maintaining the
aspect ratio.
if crop_pct is set:
- size is `{"height": h, "width": w}`: the image is resized to `(int(floor(h/crop_pct)),
int(floor(w/crop_pct)))`
- size is `{"height": c, "width": c}`: the shortest edge of the image is resized to `int(floor(c/crop_pct)`
whilst maintaining the aspect ratio.
- size is `{"shortest_edge": c}`: the shortest edge of the image is resized to `int(floor(c/crop_pct)`
whilst maintaining the aspect ratio.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image.
crop_pct (`float`, *optional*):
Percentage of the image that will be cropped from the center. If set, the image is resized
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size, default_to_square=False)
if "shortest_edge" not in size and ("height" not in size or "width" not in size):
raise ValueError(f"size must contain 'height' and 'width' or 'shortest_edge' as keys. Got {size.keys()}")
if crop_pct is not None:
if "shortest_edge" in size:
scale_size = int(size["shortest_edge"] / crop_pct)
elif "height" in size and "width" in size:
if size["height"] == size["width"]:
scale_size = int(size["height"] / crop_pct)
else:
scale_size = (int(size["height"] / crop_pct), int(size["width"] / crop_pct))
else:
raise ValueError("Invalid size for resize: {}".format(size))
output_size = get_resize_output_image_size(image, size=scale_size, default_to_square=False)
else:
if "shortest_edge" in size:
output_size = get_resize_output_image_size(image, size=size["shortest_edge"], default_to_square=False)
elif "height" in size and "width" in size:
output_size = (size["height"], size["width"])
else:
raise ValueError("Invalid size for resize: {}".format(size))
return resize(image, size=output_size, resample=resample, data_format=data_format, **kwargs)
def center_crop(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Center crop an image to (size["height"], size["width"]). If the input size is smaller than `crop_size` along
any edge, the image is padded with 0's and then center cropped.
Args:
image (`np.ndarray`):
Image to center crop.
size (`Dict[str, int]`):
Size of the output image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"size must contain 'height' and 'width' as keys. Got {size.keys()}")
return center_crop(image, size=(size["height"], size["width"]), data_format=data_format, **kwargs)
def rescale(
self,
image: np.ndarray,
scale: Union[int, float],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Rescale an image by a scale factor. image = image * scale.
Args:
image (`np.ndarray`):
Image to rescale.
scale (`int` or `float`):
Scale to apply to the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return rescale(image, scale=scale, data_format=data_format, **kwargs)
def normalize(
self,
image: np.ndarray,
mean: Union[float, List[float]],
std: Union[float, List[float]],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Normalize an image. image = (image - image_mean) / image_std.
Args:
image (`np.ndarray`):
Image to normalize.
image_mean (`float` or `List[float]`):
Image mean.
image_std (`float` or `List[float]`):
Image standard deviation.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return normalize(image, mean=mean, std=std, data_format=data_format, **kwargs)
def preprocess(
self,
images: ImageInput,
do_resize: bool = None,
size: Dict[str, int] = None,
crop_pct: int = None,
resample: PILImageResampling = None,
do_center_crop: bool = None,
crop_size: Dict[str, int] = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after applying resize.
crop_pct (`float`, *optional*, defaults to `self.crop_pct`):
Percentage of the image to crop. Only has an effect if `do_resize` is set to `True`.
resample (`int`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`, Only
has an effect if `do_resize` is set to `True`.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image.
crop_size (`Dict[str, int]`, *optional*, defaults to `self.crop_size`):
Size of the image after applying center crop.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
crop_pct = crop_pct if crop_pct is not None else self.crop_pct
resample = resample if resample is not None else self.resample
do_center_crop = do_center_crop if do_center_crop is not None else self.do_center_crop
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False)
crop_size = crop_size if crop_size is not None else self.crop_size
crop_size = get_size_dict(crop_size, param_name="crop_size")
images = make_list_of_images(images)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if do_resize and size is None or resample is None:
raise ValueError("Size and resample must be specified if do_resize is True.")
if do_center_crop and crop_pct is None:
raise ValueError("Crop_pct must be specified if do_center_crop is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
if do_normalize and (image_mean is None or image_std is None):
raise ValueError("Image mean and std must be specified if do_normalize is True.")
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if do_resize:
images = [self.resize(image=image, size=size, crop_pct=crop_pct, resample=resample) for image in images]
if do_center_crop:
images = [self.center_crop(image=image, size=crop_size) for image in images]
if do_rescale:
images = [self.rescale(image=image, scale=rescale_factor) for image in images]
if do_normalize:
images = [self.normalize(image=image, mean=image_mean, std=image_std) for image in images]
images = [to_channel_dimension_format(image, data_format) for image in images]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
| 18,310 | 47.441799 | 119 | py |
transformers | transformers-main/src/transformers/models/poolformer/convert_poolformer_original_to_pytorch.py | # coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert PoolFormer checkpoints from the original repository. URL: https://github.com/sail-sg/poolformer"""
import argparse
import json
from collections import OrderedDict
from pathlib import Path
import requests
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import PoolFormerConfig, PoolFormerForImageClassification, PoolFormerImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def replace_key_with_offset(key, offset, original_name, new_name):
"""
Replaces the key by subtracting the offset from the original layer number
"""
to_find = original_name.split(".")[0]
key_list = key.split(".")
orig_block_num = int(key_list[key_list.index(to_find) - 2])
layer_num = int(key_list[key_list.index(to_find) - 1])
new_block_num = orig_block_num - offset
key = key.replace(f"{orig_block_num}.{layer_num}.{original_name}", f"block.{new_block_num}.{layer_num}.{new_name}")
return key
def rename_keys(state_dict):
new_state_dict = OrderedDict()
total_embed_found, patch_emb_offset = 0, 0
for key, value in state_dict.items():
if key.startswith("network"):
key = key.replace("network", "poolformer.encoder")
if "proj" in key:
# Works for the first embedding as well as the internal embedding layers
if key.endswith("bias") and "patch_embed" not in key:
patch_emb_offset += 1
to_replace = key[: key.find("proj")]
key = key.replace(to_replace, f"patch_embeddings.{total_embed_found}.")
key = key.replace("proj", "projection")
if key.endswith("bias"):
total_embed_found += 1
if "patch_embeddings" in key:
key = "poolformer.encoder." + key
if "mlp.fc1" in key:
key = replace_key_with_offset(key, patch_emb_offset, "mlp.fc1", "output.conv1")
if "mlp.fc2" in key:
key = replace_key_with_offset(key, patch_emb_offset, "mlp.fc2", "output.conv2")
if "norm1" in key:
key = replace_key_with_offset(key, patch_emb_offset, "norm1", "before_norm")
if "norm2" in key:
key = replace_key_with_offset(key, patch_emb_offset, "norm2", "after_norm")
if "layer_scale_1" in key:
key = replace_key_with_offset(key, patch_emb_offset, "layer_scale_1", "layer_scale_1")
if "layer_scale_2" in key:
key = replace_key_with_offset(key, patch_emb_offset, "layer_scale_2", "layer_scale_2")
if "head" in key:
key = key.replace("head", "classifier")
new_state_dict[key] = value
return new_state_dict
# We will verify our results on a COCO image
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
return image
@torch.no_grad()
def convert_poolformer_checkpoint(model_name, checkpoint_path, pytorch_dump_folder_path):
"""
Copy/paste/tweak model's weights to our PoolFormer structure.
"""
# load default PoolFormer configuration
config = PoolFormerConfig()
# set attributes based on model_name
repo_id = "huggingface/label-files"
size = model_name[-3:]
config.num_labels = 1000
filename = "imagenet-1k-id2label.json"
expected_shape = (1, 1000)
# set config attributes
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
if size == "s12":
config.depths = [2, 2, 6, 2]
config.hidden_sizes = [64, 128, 320, 512]
config.mlp_ratio = 4.0
crop_pct = 0.9
elif size == "s24":
config.depths = [4, 4, 12, 4]
config.hidden_sizes = [64, 128, 320, 512]
config.mlp_ratio = 4.0
crop_pct = 0.9
elif size == "s36":
config.depths = [6, 6, 18, 6]
config.hidden_sizes = [64, 128, 320, 512]
config.mlp_ratio = 4.0
config.layer_scale_init_value = 1e-6
crop_pct = 0.9
elif size == "m36":
config.depths = [6, 6, 18, 6]
config.hidden_sizes = [96, 192, 384, 768]
config.mlp_ratio = 4.0
config.layer_scale_init_value = 1e-6
crop_pct = 0.95
elif size == "m48":
config.depths = [8, 8, 24, 8]
config.hidden_sizes = [96, 192, 384, 768]
config.mlp_ratio = 4.0
config.layer_scale_init_value = 1e-6
crop_pct = 0.95
else:
raise ValueError(f"Size {size} not supported")
# load image processor
image_processor = PoolFormerImageProcessor(crop_pct=crop_pct)
# Prepare image
image = prepare_img()
pixel_values = image_processor(images=image, return_tensors="pt").pixel_values
logger.info(f"Converting model {model_name}...")
# load original state dict
state_dict = torch.load(checkpoint_path, map_location=torch.device("cpu"))
# rename keys
state_dict = rename_keys(state_dict)
# create HuggingFace model and load state dict
model = PoolFormerForImageClassification(config)
model.load_state_dict(state_dict)
model.eval()
# Define image processor
image_processor = PoolFormerImageProcessor(crop_pct=crop_pct)
pixel_values = image_processor(images=prepare_img(), return_tensors="pt").pixel_values
# forward pass
outputs = model(pixel_values)
logits = outputs.logits
# define expected logit slices for different models
if size == "s12":
expected_slice = torch.tensor([-0.3045, -0.6758, -0.4869])
elif size == "s24":
expected_slice = torch.tensor([0.4402, -0.1374, -0.8045])
elif size == "s36":
expected_slice = torch.tensor([-0.6080, -0.5133, -0.5898])
elif size == "m36":
expected_slice = torch.tensor([0.3952, 0.2263, -1.2668])
elif size == "m48":
expected_slice = torch.tensor([0.1167, -0.0656, -0.3423])
else:
raise ValueError(f"Size {size} not supported")
# verify logits
assert logits.shape == expected_shape
assert torch.allclose(logits[0, :3], expected_slice, atol=1e-2)
# finally, save model and image processor
logger.info(f"Saving PyTorch model and image processor to {pytorch_dump_folder_path}...")
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving image processor to {pytorch_dump_folder_path}")
image_processor.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_name",
default="poolformer_s12",
type=str,
help="Name of the model you'd like to convert.",
)
parser.add_argument(
"--checkpoint_path", default=None, type=str, help="Path to the original PyTorch checkpoint (.pth file)."
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the folder to output PyTorch model."
)
args = parser.parse_args()
convert_poolformer_checkpoint(args.model_name, args.checkpoint_path, args.pytorch_dump_folder_path)
| 7,947 | 35.967442 | 119 | py |
transformers | transformers-main/src/transformers/models/bridgetower/modeling_bridgetower.py | # coding=utf-8
# Copyright 2023 The Intel Labs Team Authors, The Microsoft Research Team Authors and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BridgeTower Model"""
import math
from collections import OrderedDict
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN, QuickGELUActivation
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
ModelOutput,
SequenceClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, apply_chunking_to_forward
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_bridgetower import BridgeTowerConfig, BridgeTowerTextConfig, BridgeTowerVisionConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "BridgeTowerConfig"
_CHECKPOINT_FOR_DOC = "BridgeTower/bridgetower-base"
_TOKENIZER_FOR_DOC = "RobertaTokenizer"
BRIDGETOWER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"BridgeTower/bridgetower-base",
"BridgeTower/bridgetower-base-itm-mlm"
# See all bridgetower models at https://huggingface.co/BridgeTower
]
BRIDGETOWER_START_DOCSTRING = r"""
This model is a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`_ subclass. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`BridgeTowerConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
BRIDGETOWER_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary. Indices can be obtained using [`AutoTokenizer`]. See
[`PreTrainedTokenizer.encode`] and [`PreTrainedTokenizer.__call__`] for details. [What are input
IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`BridgeTowerImageProcessor`]. See
[`BridgeTowerImageProcessor.__call__`] for details.
pixel_mask (`torch.LongTensor` of shape `(batch_size, height, width)`, *optional*):
Mask to avoid performing attention on padding pixel values. Mask values selected in `[0, 1]`:
- 1 for pixels that are real (i.e. **not masked**),
- 0 for pixels that are padding (i.e. **masked**).
`What are attention masks? <../glossary.html#attention-mask>`__
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
image_embeds (`torch.FloatTensor` of shape `(batch_size, num_patches, hidden_size)`, *optional*):
Optionally, instead of passing `pixel_values`, you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `pixel_values` into patch embeddings.
image_token_type_idx (`int`, *optional*):
- The token type ids for images.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@dataclass
class BridgeTowerModelOutput(ModelOutput):
"""
Output type of [`BridgeTowerModel`].
Args:
text_features (`torch.FloatTensor` of shape `(batch_size, text_sequence_length, hidden_size)`):
Sequence of hidden-states at the text output of the last layer of the model.
image_features (`torch.FloatTensor` of shape `(batch_size, image_sequence_length, hidden_size)`):
Sequence of hidden-states at the image output of the last layer of the model.
pooler_output (`torch.FloatTensor` of shape `(batch_size, hidden_size x 2)`):
Concatenation of last layer hidden-state of the first token of the text and image sequence (classification
token), respectively, after further processing through layers used for auxiliary pretraining tasks.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of
the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
text_features: torch.FloatTensor = None
image_features: torch.FloatTensor = None
pooler_output: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class BridgeTowerContrastiveOutput(ModelOutput):
"""
Output type of ['BridgeTowerForContrastiveLearning']
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `return_loss` is `True`:
Image-text contrastive loss.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
text_embeds (`torch.FloatTensor)`, *optional*, returned when model is initialized with `with_projection=True`):
The text embeddings obtained by applying the projection layer to the pooler_output.
image_embeds (`torch.FloatTensor)`, *optional*, returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
cross_embeds (`torch.FloatTensor)`, *optional*, returned when model is initialized with `with_projection=True`):
The text-image cross-modal embeddings obtained by applying the projection layer to the pooler_output.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of
the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
text_embeds: Optional[Tuple[torch.FloatTensor]] = None
image_embeds: Optional[Tuple[torch.FloatTensor]] = None
cross_embeds: Optional[Tuple[torch.FloatTensor]] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
class BridgeTowerResidualAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.attn = nn.MultiheadAttention(config.hidden_size, config.hidden_size // 64)
self.ln_1 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.mlp = nn.ModuleDict(
OrderedDict(
[
("c_fc", nn.Linear(config.hidden_size, config.hidden_size * 4)),
("gelu", QuickGELUActivation()),
("c_proj", nn.Linear(config.hidden_size * 4, config.hidden_size)),
]
)
)
self.ln_2 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.attn_mask = None
def attention(self, hidden_state: torch.Tensor, attention_mask: torch.Tensor):
if attention_mask is not None:
attention_mask = attention_mask.to(dtype=torch.bool, device=hidden_state.device)
self.attn_mask = (
self.attn_mask.to(dtype=hidden_state.dtype, device=hidden_state.device)
if self.attn_mask is not None
else None
)
return self.attn(
hidden_state,
hidden_state,
hidden_state,
need_weights=False,
attn_mask=self.attn_mask,
key_padding_mask=attention_mask,
)[0]
def forward(self, hidden_state: torch.Tensor, attention_mask: torch.Tensor = None):
residual_state = hidden_state + self.attention(self.ln_1(hidden_state), attention_mask)
hidden_state = self.ln_2(residual_state)
for _, layer in self.mlp.items():
hidden_state = layer(hidden_state)
hidden_state = residual_state + hidden_state
return hidden_state
class BridgeTowerTransformer(nn.Module):
def __init__(self, config):
super().__init__()
self.hidden_size = config.hidden_size
self.num_hidden_layers = config.num_hidden_layers
if config.remove_last_layer:
self.resblocks = nn.ModuleList(
[BridgeTowerResidualAttention(config) for _ in range(self.num_hidden_layers - 1)]
)
else:
self.resblocks = nn.ModuleList(
[BridgeTowerResidualAttention(config) for _ in range(self.num_hidden_layers)]
)
self.stop_gradient = config.stop_gradient
def forward(self, hidden_state: torch.Tensor, attention_mask: Optional[torch.Tensor] = None):
hidden_states = []
for block in self.resblocks:
hidden_state = block(hidden_state, attention_mask)
if self.stop_gradient:
hidden_states.append(hidden_state.detach())
else:
hidden_states.append(hidden_state)
return hidden_states
# Copied from transformers.models.clip.modeling_clip.CLIPVisionEmbeddings with CLIP->BridgeTower
class BridgeTowerVisionEmbeddings(nn.Module):
def __init__(self, config: BridgeTowerVisionConfig):
super().__init__()
self.config = config
self.embed_dim = config.hidden_size
self.image_size = config.image_size
self.patch_size = config.patch_size
self.class_embedding = nn.Parameter(torch.randn(self.embed_dim))
self.patch_embedding = nn.Conv2d(
in_channels=config.num_channels,
out_channels=self.embed_dim,
kernel_size=self.patch_size,
stride=self.patch_size,
bias=False,
)
self.num_patches = (self.image_size // self.patch_size) ** 2
self.num_positions = self.num_patches + 1
self.position_embedding = nn.Embedding(self.num_positions, self.embed_dim)
self.register_buffer("position_ids", torch.arange(self.num_positions).expand((1, -1)), persistent=False)
def forward(self, pixel_values: torch.FloatTensor) -> torch.Tensor:
batch_size = pixel_values.shape[0]
patch_embeds = self.patch_embedding(pixel_values) # shape = [*, width, grid, grid]
patch_embeds = patch_embeds.flatten(2).transpose(1, 2)
class_embeds = self.class_embedding.expand(batch_size, 1, -1)
embeddings = torch.cat([class_embeds, patch_embeds], dim=1)
embeddings = embeddings + self.position_embedding(self.position_ids)
return embeddings
class BridgeTowerVisionTransformer(nn.Module):
def __init__(self, config):
super().__init__()
self.embeddings = BridgeTowerVisionEmbeddings(config)
self.ln_pre = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.transformer = BridgeTowerTransformer(config)
self.ln_post = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.share_layernorm = config.share_layernorm
if not config.share_layernorm:
self.ln_separate = nn.ModuleList(
[nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) for _ in range(config.num_hidden_layers)]
)
def forward(self, pixel_values: torch.Tensor, attention_mask):
hidden_states = self.embeddings(pixel_values)
hidden_states = self.ln_pre(hidden_states)
# NLD -> LND
hidden_states = hidden_states.permute(1, 0, 2)
hidden_states = self.transformer(hidden_states, attention_mask)
# shape = [num_hidden_layers, hidden_size, *, grid ** 2]
hidden_states = torch.stack(hidden_states, dim=0)
# shape = [num_hidden_layers, *, hidden_size, grid ** 2]
hidden_states = hidden_states.permute(0, 2, 1, 3)
if self.share_layernorm:
hidden_states = self.ln_post(hidden_states)
else:
hidden_states_stack = []
for hidden_states, ln in zip(hidden_states, self.ln_separate):
hidden_states = ln(hidden_states)
hidden_states_stack.append(hidden_states)
# shape = [num_hidden_layers, *, hidden_size, grid ** 2]
hidden_states = torch.stack(hidden_states_stack, dim=0)
return hidden_states
def forward_pre(self, pixel_values: torch.Tensor):
hidden_states = self.embeddings(pixel_values)
hidden_states = self.ln_pre(hidden_states)
# NLD -> LND
hidden_states = hidden_states.permute(1, 0, 2)
return hidden_states
def forward_post(self, hidden_state: torch.Tensor):
visual_output_post = hidden_state.permute(1, 0, 2)
visual_output_post = self.ln_post(visual_output_post)
return visual_output_post
class BridgeTowerLinkTower(nn.Module):
def __init__(self, config):
super().__init__()
self.link_tower_type = config.link_tower_type
self.hidden_size = config.hidden_size
if config.link_tower_type in ["add", "scaled_add", "interpolate"]:
if config.link_tower_type == "scaled_add":
self.scaled_factor = nn.Parameter(torch.tensor(1.0))
elif config.link_tower_type == "interpolate":
self.beta = nn.Parameter(torch.tensor(0.5))
self.LayerNorm = nn.LayerNorm(self.hidden_size, eps=config.layer_norm_eps)
else:
raise NotImplementedError(f"link_tower_type {config.link_tower_type} is not implemented")
def forward(self, hidden_states, cross_modal_hidden_states, attention_mask):
if self.link_tower_type == "add":
return self.LayerNorm(hidden_states + cross_modal_hidden_states)
elif self.link_tower_type == "scaled_add":
return self.LayerNorm(hidden_states * self.scaled_factor + cross_modal_hidden_states)
elif self.link_tower_type == "interpolate":
return self.LayerNorm(hidden_states * (1 - self.beta) + cross_modal_hidden_states * self.beta)
else:
raise NotImplementedError(f"link_tower_type {self.link_tower_type} is not implemented")
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput with Bert->BridgeTower
class BridgeTowerSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->BridgeTower
class BridgeTowerIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert->BridgeTower
class BridgeTowerOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertPooler with Bert->BridgeTower
class BridgeTowerPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
# Copied from transformers.models.roberta.modeling_roberta.RobertaSelfAttention with Roberta->BridgeTower
class BridgeTowerSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
use_cache = past_key_value is not None
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
query_length, key_length = query_layer.shape[2], key_layer.shape[2]
if use_cache:
position_ids_l = torch.tensor(key_length - 1, dtype=torch.long, device=hidden_states.device).view(
-1, 1
)
else:
position_ids_l = torch.arange(query_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(key_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BridgeTowerModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertAttention with Bert->BridgeTower
class BridgeTowerAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
self.self = BridgeTowerSelfAttention(config, position_embedding_type=position_embedding_type)
self.output = BridgeTowerSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class BridgeTowerBertCrossLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = BridgeTowerAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
self.crossattention = BridgeTowerAttention(config)
self.intermediate = BridgeTowerIntermediate(config)
self.output = BridgeTowerOutput(config)
def forward(
self,
hidden_states,
encoder_hidden_states,
attention_mask=None,
head_mask=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attention_outputs = self.attention(
hidden_states,
attention_mask=attention_mask,
head_mask=None,
output_attentions=output_attentions,
past_key_value=None,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
# add self attentions if we output attention weights
outputs = self_attention_outputs[1:]
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask=attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_value=past_key_value,
output_attentions=output_attentions,
)
attention_output = cross_attention_outputs[0]
# add cross attentions if we output attention weights
outputs = outputs + cross_attention_outputs[1:-1]
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class BridgeTowerTextLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = BridgeTowerAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = BridgeTowerAttention(config, position_embedding_type="absolute")
self.intermediate = BridgeTowerIntermediate(config)
self.output = BridgeTowerOutput(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
# Copied from transformers.models.roberta.modeling_roberta.RobertaEncoder with Roberta->BridgeTowerText
class BridgeTowerTextEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([BridgeTowerTextLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.roberta.modeling_roberta.RobertaEmbeddings with Roberta->BridgeTowerText
class BridgeTowerTextEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
# Copied from transformers.models.bert.modeling_bert.BertEmbeddings.__init__
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.register_buffer(
"token_type_ids", torch.zeros(self.position_ids.size(), dtype=torch.long), persistent=False
)
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
# Copied from transformers.models.roberta.modeling_roberta.create_position_ids_from_input_ids
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
class BridgeTowerPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BridgeTowerConfig
base_model_prefix = "bridgetower"
supports_gradient_checkpointing = False
_no_split_modules = ["BridgeTowerSelfAttention", "BridgeTowerResidualAttention"]
_skip_keys_device_placement = "past_key_values"
def _init_weights(self, module):
if isinstance(module, BridgeTowerVisionModel):
proj_std = (module.visual.transformer.hidden_size**-0.5) * (
(2 * module.visual.transformer.num_hidden_layers) ** -0.5
)
attn_std = module.visual.transformer.hidden_size**-0.5
fc_std = (2 * module.visual.transformer.hidden_size) ** -0.5
for block in module.visual.transformer.resblocks:
nn.init.normal_(block.attn.in_proj_weight, std=attn_std * self.config.initializer_factor)
nn.init.normal_(block.attn.out_proj.weight, std=proj_std * self.config.initializer_factor)
nn.init.normal_(block.mlp.c_fc.weight, std=fc_std * self.config.initializer_factor)
nn.init.normal_(block.mlp.c_proj.weight, std=proj_std * self.config.initializer_factor)
nn.init.normal_(module.visual.embeddings.class_embedding, std=attn_std * self.config.initializer_factor)
nn.init.normal_(
module.visual.embeddings.position_embedding.weight, std=attn_std * self.config.initializer_factor
)
elif isinstance(module, (nn.Linear, nn.Conv2d, nn.Embedding)):
module.weight.data.normal_(mean=0.0, std=0.05 * self.config.initializer_factor)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
class BridgeTowerVisionModel(BridgeTowerPreTrainedModel):
config_class = BridgeTowerVisionConfig
def __init__(self, config):
super().__init__(config)
self.visual = BridgeTowerVisionTransformer(config)
@property
def dtype(self):
return self.visual.embeddings.patch_embedding.weight.dtype
def forward(self, image, image_mask=None):
return self.visual(image.type(self.dtype), image_mask)
class BridgeTowerTextModel(BridgeTowerPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in *Attention is
all you need*_ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz
Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
.. _*Attention is all you need*: https://arxiv.org/abs/1706.03762
"""
config_class = BridgeTowerTextConfig
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = BridgeTowerTextEmbeddings(config)
self.encoder = BridgeTowerTextEncoder(config)
self.pooler = BridgeTowerPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
# Copied from transformers.models.roberta.modeling_roberta.RobertaModel.forward
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings(
"The bare BridgeTower Model transformer outputting BridgeTowerModelOutput object without any specific head on"
" top.",
BRIDGETOWER_START_DOCSTRING,
)
class BridgeTowerModel(BridgeTowerPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
vision_config = config.vision_config
text_config = config.text_config
if config.share_cross_modal_transformer_layers:
self.cross_modal_text_transform = nn.Linear(text_config.hidden_size, config.hidden_size)
self.cross_modal_image_transform = nn.Linear(vision_config.hidden_size, config.hidden_size)
else:
self.cross_modal_text_transform = nn.ModuleList(
[nn.Linear(text_config.hidden_size, config.hidden_size) for _ in range(config.num_hidden_layers)]
)
self.cross_modal_image_transform = nn.ModuleList(
[nn.Linear(vision_config.hidden_size, config.hidden_size) for _ in range(config.num_hidden_layers)]
)
self.token_type_embeddings = nn.Embedding(2, config.hidden_size)
self.vision_model = BridgeTowerVisionModel(vision_config)
self.text_model = BridgeTowerTextModel(text_config)
if not vision_config.share_layernorm and config.init_layernorm_from_vision_encoder:
for ln in self.vision_model.visual.cross_modal_ln_separate:
ln.weight.data = self.vision_model.visual.ln_post.weight.data
ln.bias.data = self.vision_model.visual.ln_post.bias.data
self.cross_modal_image_layers = nn.ModuleList(
[BridgeTowerBertCrossLayer(text_config) for _ in range(config.num_hidden_layers)]
)
self.cross_modal_text_layers = nn.ModuleList(
[BridgeTowerBertCrossLayer(text_config) for _ in range(config.num_hidden_layers)]
)
# Class token => Linear => Tanh
self.cross_modal_image_pooler = BridgeTowerPooler(config)
self.cross_modal_text_pooler = BridgeTowerPooler(config)
# Initialize BridgeTower Components
self.cross_modal_text_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.cross_modal_image_layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
if config.share_link_tower_layers:
self.cross_modal_text_link_tower = BridgeTowerLinkTower(config)
self.cross_modal_image_link_tower = BridgeTowerLinkTower(config)
else:
self.cross_modal_text_link_tower = nn.ModuleList(
[BridgeTowerLinkTower(config) for _ in range(config.num_hidden_layers - 1)]
)
self.cross_modal_image_link_tower = nn.ModuleList(
[BridgeTowerLinkTower(config) for _ in range(config.num_hidden_layers - 1)]
)
self.post_init()
def get_input_embeddings(self):
return self.text_model.get_input_embeddings()
def set_input_embeddings(self, value):
self.text_model.set_input_embeddings(value)
@add_start_docstrings_to_model_forward(BRIDGETOWER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BridgeTowerModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
pixel_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
image_embeds: Optional[torch.FloatTensor] = None,
image_token_type_idx: Optional[int] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
) -> Union[Tuple[torch.Tensor], BridgeTowerModelOutput]:
r"""
output_hidden_states (`bool`, *optional*):
If set to `True`, hidden states are returned as a list containing the hidden states of text, image, and
cross-modal components respectively. i.e. `(hidden_states_text, hidden_states_image,
hidden_states_cross_modal)` where each element is a list of the hidden states of the corresponding
modality. `hidden_states_txt/img` are a list of tensors corresponding to unimodal hidden states and
`hidden_states_cross_modal` is a list of tuples containing `cross_modal_text_hidden_states` and
`cross_modal_image_hidden_states` of each brdige layer.
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels are currently not supported.
Returns:
Examples:
```python
>>> from transformers import BridgeTowerProcessor, BridgeTowerModel
>>> from PIL import Image
>>> import requests
>>> # prepare image and text
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "hello world"
>>> processor = BridgeTowerProcessor.from_pretrained("BridgeTower/bridgetower-base")
>>> model = BridgeTowerModel.from_pretrained("BridgeTower/bridgetower-base")
>>> inputs = processor(image, text, return_tensors="pt")
>>> outputs = model(**inputs)
>>> outputs.keys()
odict_keys(['text_features', 'image_features', 'pooler_output'])
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
all_hidden_states_text = () if output_hidden_states else None
all_hidden_states_image = () if output_hidden_states else None
all_hidden_states_cross = () if output_hidden_states else None
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
image_token_type_idx = image_token_type_idx if image_token_type_idx else 1
input_shape = input_ids.size()
text_embeds = self.text_model.embeddings(input_ids=input_ids)
if output_hidden_states:
all_hidden_states_text += (text_embeds,)
if attention_mask is None:
attention_mask = torch.ones(input_shape, dtype=torch.long, device=input_ids.device)
extend_text_masks = self.text_model.get_extended_attention_mask(attention_mask, input_shape).to(
input_ids.device
)
# The split_index determines how many layers of the uni-modal encoder are applied before the cross-modal encoder
split_index = len(self.text_model.encoder.layer) - self.config.num_hidden_layers + 1
# Run the first 'split_index' layers of the textual encoder
for layer in self.text_model.encoder.layer[:split_index]:
text_embeds = layer(text_embeds, extend_text_masks)[0]
if output_hidden_states:
all_hidden_states_text += (text_embeds,)
if image_embeds is None:
image_embeds = self.vision_model.visual.forward_pre(pixel_values.type(self.vision_model.dtype))
else:
# Permute as BridgeTowerResidualAttention has batch_first=True
image_embeds = image_embeds.permute(1, 0, 2)
if output_hidden_states:
all_hidden_states_image += (image_embeds,)
# Run the first 'split_index' layers of the visual encoder
for block in self.vision_model.visual.transformer.resblocks[:split_index]:
image_embeds = block(image_embeds)
if output_hidden_states:
all_hidden_states_image += (image_embeds,)
image_embeds_with_ln = self.vision_model.visual.forward_post(image_embeds.type(self.vision_model.dtype))
# first layer is a special case because we don't have the output from the cross-encoder yet
cross_modal_text = self.cross_modal_text_transform(text_embeds)
text_token_type_embeddings = self.token_type_embeddings(
torch.zeros(1, dtype=torch.long, device=input_ids.device)
).expand_as(cross_modal_text)
cross_modal_text = self.cross_modal_text_layernorm(cross_modal_text + text_token_type_embeddings)
image_embeds_with_ln = self.cross_modal_image_transform(image_embeds_with_ln)
image_token_type_embeddings = self.token_type_embeddings(
torch.full((1,), image_token_type_idx, dtype=torch.long, device=input_ids.device)
).expand_as(image_embeds_with_ln)
image_embeds_with_ln = image_embeds_with_ln + image_token_type_embeddings
cross_modal_image = self.cross_modal_image_layernorm(image_embeds_with_ln)
pixel_mask = torch.ones(
(cross_modal_image.size(0), cross_modal_image.size(1)),
dtype=torch.long,
device=input_ids.device,
)
extend_image_masks = self.text_model.get_extended_attention_mask(pixel_mask, pixel_mask.size()).to(
input_ids.device
)
layer_outputs_text = self.cross_modal_text_layers[0](
cross_modal_text,
cross_modal_image,
attention_mask=extend_text_masks,
encoder_attention_mask=extend_image_masks,
output_attentions=output_attentions,
)
cross_text_features = layer_outputs_text[0]
layer_outputs_image = self.cross_modal_image_layers[0](
cross_modal_image,
cross_modal_text,
attention_mask=extend_image_masks,
encoder_attention_mask=extend_text_masks,
output_attentions=output_attentions,
)
cross_image_features = layer_outputs_image[0]
if output_hidden_states:
all_hidden_states_cross += ((cross_text_features, cross_image_features),)
if output_attentions:
all_self_attentions += ((layer_outputs_text[1], layer_outputs_image[1]),)
link_layer_index = 0
# Each of the top 6 layers of the visual and textual encoders ([split_index:]) is connected to each layer of
# the cross-modal encoder via bridge layers, which brings bottom-up alignment and fusion to the cross-modal encoder.
for i in range(split_index, len(self.text_model.encoder.layer)):
text_embeds = self.text_model.encoder.layer[i](text_embeds, extend_text_masks)[0]
image_embeds = self.vision_model.visual.transformer.resblocks[i](image_embeds).type(
self.vision_model.dtype
)
image_embeds_with_ln = (
self.cross_modal_image_transform(self.vision_model.visual.forward_post(image_embeds))
+ image_token_type_embeddings
)
text_link_tower = self.cross_modal_text_link_tower[link_layer_index]
image_link_tower = self.cross_modal_image_link_tower[link_layer_index]
# Bridge layers for textual and visual encoders
cross_text_features_ = text_link_tower(
self.cross_modal_text_transform(text_embeds) + text_token_type_embeddings,
cross_text_features,
extend_text_masks,
)
cross_image_features_ = image_link_tower(image_embeds_with_ln, cross_image_features, extend_image_masks)
# Cross-modal encoder via bridge layers of textual and visual encoders
layer_outputs_text = self.cross_modal_text_layers[link_layer_index + 1](
cross_text_features_,
cross_image_features_,
attention_mask=extend_text_masks,
encoder_attention_mask=extend_image_masks,
output_attentions=output_attentions,
)
cross_text_features = layer_outputs_text[0]
layer_outputs_image = self.cross_modal_image_layers[link_layer_index + 1](
cross_image_features_,
cross_text_features_,
attention_mask=extend_image_masks,
encoder_attention_mask=extend_text_masks,
output_attentions=output_attentions,
)
cross_image_features = layer_outputs_image[0]
link_layer_index += 1
if output_hidden_states:
all_hidden_states_text += (text_embeds,)
all_hidden_states_image += (image_embeds,)
all_hidden_states_cross += ((cross_text_features, cross_image_features),)
if output_attentions:
all_self_attentions += ((layer_outputs_text[1], layer_outputs_image[1]),)
# Concatenate the cls token of the text and image features to get the final represtation
text_features, image_features = cross_text_features, cross_image_features
cls_features = self.get_cls_features(text_features, image_features)
if output_hidden_states:
all_hidden_states = (all_hidden_states_text, all_hidden_states_image, all_hidden_states_cross)
if not return_dict:
return tuple(
v
for v in [text_features, image_features, cls_features, all_hidden_states, all_self_attentions]
if v is not None
)
return BridgeTowerModelOutput(
text_features=text_features,
image_features=image_features,
pooler_output=cls_features,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
def get_cls_features(self, text_features, image_features):
cls_features_text = self.cross_modal_text_pooler(text_features)
cls_features_image = self.cross_modal_image_pooler(image_features)
return torch.cat([cls_features_text, cls_features_image], dim=-1)
# Copied from transformers.models.vilt.modeling_vilt.ViltPredictionHeadTransform with Vilt->BridgeTower
class BridgeTowerPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class BridgeTowerMLMHead(nn.Module):
def __init__(self, config, weight=None):
super().__init__()
self.config = config
self.transform = BridgeTowerPredictionHeadTransform(config)
self.decoder = nn.Linear(config.hidden_size, config.text_config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.text_config.vocab_size))
if weight is not None:
self.decoder.weight = weight
def forward(self, x):
mlm_score = self.transform(x)
mlm_score = self.decoder(mlm_score) + self.bias
return mlm_score
class BridgeTowerITMHead(nn.Module):
def __init__(self, hidden_size):
super().__init__()
self.fc = nn.Linear(hidden_size, 2)
def forward(self, x):
itm_score = self.fc(x)
return itm_score
@add_start_docstrings(
"""
BridgeTower Model with a language modeling head on top as done during pretraining.
""",
BRIDGETOWER_START_DOCSTRING,
)
class BridgeTowerForMaskedLM(BridgeTowerPreTrainedModel):
_tied_weights_keys = ["mlm_score.decoder.weight"]
def __init__(self, config):
super().__init__(config)
self.bridgetower = BridgeTowerModel(config)
self.mlm_score = BridgeTowerMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.mlm_score.decoder
def set_output_embeddings(self, new_embeddings):
self.mlm_score.decoder = new_embeddings
@add_start_docstrings_to_model_forward(BRIDGETOWER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=MaskedLMOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
pixel_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
image_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
) -> Union[MaskedLMOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
Returns:
Examples:
```python
>>> from transformers import BridgeTowerProcessor, BridgeTowerForMaskedLM
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000360943.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw).convert("RGB")
>>> text = "a <mask> looking out of the window"
>>> processor = BridgeTowerProcessor.from_pretrained("BridgeTower/bridgetower-base-itm-mlm")
>>> model = BridgeTowerForMaskedLM.from_pretrained("BridgeTower/bridgetower-base-itm-mlm")
>>> # prepare inputs
>>> encoding = processor(image, text, return_tensors="pt")
>>> # forward pass
>>> outputs = model(**encoding)
>>> results = processor.decode(outputs.logits.argmax(dim=-1).squeeze(0).tolist())
>>> print(results)
.a cat looking out of the window.
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bridgetower(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
pixel_values=pixel_values,
pixel_mask=pixel_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
image_embeds=image_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
mlm_logits = self.mlm_score(outputs.text_features if return_dict else outputs[0])
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
labels = labels.to(mlm_logits.device)
masked_lm_loss = loss_fct(mlm_logits.view(-1, self.config.text_config.vocab_size), labels.view(-1))
if not return_dict:
output = tuple(mlm_logits)
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=mlm_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
BridgeTower Model transformer with a classifier head on top (a linear layer on top of the final hidden state of the
[CLS] token) for image-to-text matching.
""",
BRIDGETOWER_START_DOCSTRING,
)
class BridgeTowerForImageAndTextRetrieval(BridgeTowerPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bridgetower = BridgeTowerModel(config)
self.itm_score = BridgeTowerITMHead(config.hidden_size * 2)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BRIDGETOWER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=SequenceClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
pixel_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
image_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
) -> Union[SequenceClassifierOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, 1)`, *optional*):
Labels for computing the image-text matching loss. 0 means the pairs don't match and 1 means they match.
The pairs with 0 will be skipped for calculation.
Returns:
Examples:
```python
>>> from transformers import BridgeTowerProcessor, BridgeTowerForImageAndTextRetrieval
>>> import requests
>>> from PIL import Image
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> texts = ["An image of two cats chilling on a couch", "A football player scoring a goal"]
>>> processor = BridgeTowerProcessor.from_pretrained("BridgeTower/bridgetower-base-itm-mlm")
>>> model = BridgeTowerForImageAndTextRetrieval.from_pretrained("BridgeTower/bridgetower-base-itm-mlm")
>>> # forward pass
>>> scores = dict()
>>> for text in texts:
... # prepare inputs
... encoding = processor(image, text, return_tensors="pt")
... outputs = model(**encoding)
... scores[text] = outputs.logits[0, 1].item()
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bridgetower(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
pixel_values=pixel_values,
pixel_mask=pixel_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
image_embeds=image_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooler_output = outputs.pooler_output if return_dict else outputs[2]
logits = self.itm_score(pooler_output)
itm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(logits.device)
itm_loss = loss_fct(logits, labels)
if not return_dict:
output = tuple(logits)
return ((itm_loss,) + output) if itm_loss is not None else output
return SequenceClassifierOutput(
loss=itm_loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class BridgeTowerContrastiveHead(nn.Module):
def __init__(self, hidden_size, embed_size):
super().__init__()
self.fc = nn.Linear(hidden_size, embed_size)
def forward(self, x):
x = self.fc(x)
return x
@add_start_docstrings(
"""
BridgeTower Model with a image-text contrastive head on top computing image-text contrastive loss.
""",
BRIDGETOWER_START_DOCSTRING,
)
class BridgeTowerForContrastiveLearning(BridgeTowerPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bridgetower = BridgeTowerModel(config)
self.itc_text_head = BridgeTowerContrastiveHead(config.hidden_size, config.contrastive_hidden_size)
self.itc_image_head = BridgeTowerContrastiveHead(config.hidden_size, config.contrastive_hidden_size)
self.itc_cross_modal_head = BridgeTowerContrastiveHead(config.hidden_size * 2, config.contrastive_hidden_size)
self.logit_scale = nn.Parameter(torch.tensor(self.config.logit_scale_init_value))
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BRIDGETOWER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BridgeTowerContrastiveOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
pixel_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
image_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = True,
return_dict: Optional[bool] = None,
return_loss: Optional[bool] = None,
) -> Union[BridgeTowerContrastiveOutput, Tuple[torch.FloatTensor]]:
r"""
return_loss (`bool`, *optional*):
Whether or not to return the contrastive loss.
Returns:
Examples:
```python
>>> from transformers import BridgeTowerProcessor, BridgeTowerForContrastiveLearning
>>> import requests
>>> from PIL import Image
>>> import torch
>>> image_urls = [
... "https://farm4.staticflickr.com/3395/3428278415_81c3e27f15_z.jpg",
... "http://images.cocodataset.org/val2017/000000039769.jpg",
... ]
>>> texts = ["two dogs in a car", "two cats sleeping on a couch"]
>>> images = [Image.open(requests.get(url, stream=True).raw) for url in image_urls]
>>> processor = BridgeTowerProcessor.from_pretrained("BridgeTower/bridgetower-large-itm-mlm-itc")
>>> model = BridgeTowerForContrastiveLearning.from_pretrained("BridgeTower/bridgetower-large-itm-mlm-itc")
>>> inputs = processor(images, texts, padding=True, return_tensors="pt")
>>> loss = model(**inputs, return_loss=True).loss
>>> inputs = processor(images, texts[::-1], padding=True, return_tensors="pt")
>>> loss_swapped = model(**inputs, return_loss=True).loss
>>> print("Loss", round(loss.item(), 4))
Loss 0.0019
>>> print("Loss with swapped images", round(loss_swapped.item(), 4))
Loss with swapped images 2.126
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.bridgetower(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
pixel_values=pixel_values,
pixel_mask=pixel_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
image_embeds=image_embeds,
output_attentions=output_attentions,
output_hidden_states=True,
return_dict=return_dict,
)
pooler_output = outputs.pooler_output if return_dict else outputs[2]
hidden_states_txt, hidden_states_img, hidden_states_cross_modal = (
outputs.hidden_states if return_dict else outputs[3]
)
text_embeds = hidden_states_txt[-1]
image_embeds = hidden_states_img[-1]
image_embeds_with_ln = self.bridgetower.vision_model.visual.forward_post(image_embeds)
image_token_type_embeddings = self.bridgetower.token_type_embeddings(
torch.full((1,), 1, dtype=torch.long, device=self.bridgetower.token_type_embeddings.weight.device)
).expand_as(image_embeds_with_ln)
image_embeds = self.bridgetower.cross_modal_image_transform(image_embeds_with_ln) + image_token_type_embeddings
# normalized features
text_embeds = nn.functional.normalize(self.itc_text_head(text_embeds[:, 0, :]), dim=-1, p=2)
image_embeds = nn.functional.normalize(self.itc_image_head(image_embeds[:, 0, :]), dim=-1, p=2).to(
device=text_embeds.device
)
cross_embeds = nn.functional.normalize(self.itc_cross_modal_head(pooler_output), dim=-1, p=2).to(
device=text_embeds.device
)
logits = torch.stack([text_embeds, image_embeds, cross_embeds], dim=-2)
logit_scale = self.logit_scale.exp().to(device=text_embeds.device)
logits_text_to_image = torch.matmul(text_embeds, image_embeds.t()) * logit_scale
logits_text_to_cross = torch.matmul(text_embeds, cross_embeds.t()) * logit_scale
logits_image_to_cross = torch.matmul(image_embeds, cross_embeds.t()) * logit_scale
itc_loss = None
if return_loss:
labels = torch.arange(len(logits), device=logits.device)
text_to_image_loss = nn.functional.cross_entropy(logits_text_to_image, labels)
text_to_cross_loss = nn.functional.cross_entropy(logits_text_to_cross, labels)
image_to_cross_loss = nn.functional.cross_entropy(logits_image_to_cross, labels)
itc_loss = (text_to_image_loss + text_to_cross_loss + image_to_cross_loss) / 3.0
if not return_dict:
output = (logits, text_embeds, image_embeds, cross_embeds) + outputs[3:]
return ((itc_loss,) + output) if itc_loss is not None else output
return BridgeTowerContrastiveOutput(
loss=itc_loss,
logits=logits,
text_embeds=text_embeds,
image_embeds=image_embeds,
cross_embeds=cross_embeds,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 88,379 | 45.36936 | 198 | py |
transformers | transformers-main/src/transformers/models/bridgetower/configuration_bridgetower.py | # coding=utf-8
# Copyright 2023 The Intel Labs Team Authors, The Microsoft Research Team Authors and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License=, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing=, software
# distributed under the License is distributed on an "AS IS" BASIS=,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND=, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" BridgeTower model configuration"""
import copy
import os
from typing import Union
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
BRIDGETOWER_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"BridgeTower/bridgetower-base": "https://huggingface.co/BridgeTower/bridgetower-base/blob/main/config.json",
"BridgeTower/bridgetower-base-itm-mlm": (
"https://huggingface.co/BridgeTower/bridgetower-base-itm-mlm/blob/main/config.json"
),
}
class BridgeTowerVisionConfig(PretrainedConfig):
r"""
This is the configuration class to store the vision configuration of a [`BridgeTowerModel`]. Instantiating a
configuration with the defaults will yield a similar configuration to that of the bridgetower-base
[BridgeTower/bridgetower-base](https://huggingface.co/BridgeTower/bridgetower-base/) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in visual encoder model.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
image_size (`int`, *optional*, defaults to 288):
The size (resolution) of each image.
initializer_factor (`float``, *optional*, defaults to 1):
A factor for initializing all weight matrices (should be kept to 1, used internally for initialization
testing).
layer_norm_eps (`float`, *optional*, defaults to 1e-05):
The epsilon used by the layer normalization layers.
stop_gradient (`bool`, *optional*, defaults to `False`):
Whether to stop gradient for training.
share_layernorm (`bool`, *optional*, defaults to `True`):
Whether LayerNorm layers are shared.
remove_last_layer (`bool`, *optional*, defaults to `False`):
Whether to remove the last layer from the vision encoder.
Example:
```python
>>> from transformers import BridgeTowerVisionConfig
>>> # Initializing a BridgeTower BridgeTower/bridgetower-base style configuration for the vision model
>>> configuration = BridgeTowerVisionConfig()
>>> # Accessing the configuration
>>> configuration
```"""
model_type = "bridgetower_vision_model"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_channels=3,
patch_size=16,
image_size=288,
initializer_factor=1,
layer_norm_eps=1e-05,
stop_gradient=False,
share_layernorm=True,
remove_last_layer=False,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_channels = num_channels
self.patch_size = patch_size
self.image_size = image_size
self.initializer_factor = initializer_factor
self.layer_norm_eps = layer_norm_eps
self.stop_gradient = stop_gradient
self.share_layernorm = share_layernorm
self.remove_last_layer = remove_last_layer
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Union[str, os.PathLike], **kwargs) -> "PretrainedConfig":
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
if config_dict.get("model_type") == "bridgetower":
config_dict = config_dict["text_config"]
if "model_type" in config_dict and hasattr(cls, "model_type") and config_dict["model_type"] != cls.model_type:
logger.warning(
f"You are using a model of type {config_dict['model_type']} to instantiate a model of type "
f"{cls.model_type}. This is not supported for all configurations of models and can yield errors."
)
return cls.from_dict(config_dict, **kwargs)
class BridgeTowerTextConfig(PretrainedConfig):
r"""
This is the configuration class to store the text configuration of a [`BridgeTowerModel`]. The default values here
are copied from RoBERTa. Instantiating a configuration with the defaults will yield a similar configuration to that
of the bridgetower-base [BridegTower/bridgetower-base](https://huggingface.co/BridgeTower/bridgetower-base/)
architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50265):
Vocabulary size of the text part of the model. Defines the number of different tokens that can be
represented by the `inputs_ids` passed when calling [`BridgeTowerModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 514):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids`.
initializer_factor (`float``, *optional*, defaults to 1):
A factor for initializing all weight matrices (should be kept to 1, used internally for initialization
testing).
layer_norm_eps (`float`, *optional*, defaults to 1e-05):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
Example:
```python
>>> from transformers import BridgeTowerTextConfig
>>> # Initializing a BridgeTower BridgeTower/bridgetower-base style configuration for the text model
>>> configuration = BridgeTowerTextConfig()
>>> # Accessing the configuration
>>> configuration
```"""
model_type = "bridgetower_text_model"
def __init__(
self,
vocab_size=50265,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
initializer_factor=1,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=514,
type_vocab_size=1,
layer_norm_eps=1e-05,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
position_embedding_type="absolute",
use_cache=True,
**kwargs,
):
super().__init__(**kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.initializer_factor = initializer_factor
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.pad_token_id = pad_token_id
self.bos_token_id = bos_token_id
self.eos_token_id = eos_token_id
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Union[str, os.PathLike], **kwargs) -> "PretrainedConfig":
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
if config_dict.get("model_type") == "bridgetower":
config_dict = config_dict["text_config"]
if "model_type" in config_dict and hasattr(cls, "model_type") and config_dict["model_type"] != cls.model_type:
logger.warning(
f"You are using a model of type {config_dict['model_type']} to instantiate a model of type "
f"{cls.model_type}. This is not supported for all configurations of models and can yield errors."
)
return cls.from_dict(config_dict, **kwargs)
class BridgeTowerConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`BridgeTowerModel`]. It is used to instantiate a
BridgeTower model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the bridgetower-base
[BridgeTower/bridgetower-base](https://huggingface.co/BridgeTower/bridgetower-base/) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
share_cross_modal_transformer_layers (`bool`, *optional*, defaults to `True`):
Whether cross modal transformer layers are shared.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler.
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
initializer_factor (`float``, *optional*, defaults to 1):
A factor for initializing all weight matrices (should be kept to 1, used internally for initialization
testing).
layer_norm_eps (`float`, *optional*, defaults to 1e-05):
The epsilon used by the layer normalization layers.
share_link_tower_layers (`bool`, *optional*, defaults to `False`):
Whether the bride/link tower layers are shared.
link_tower_type (`str`, *optional*, defaults to `"add"`):
Type of the bridge/link layer.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
num_hidden_layers (`int`, *optional*, defaults to 6):
Number of hidden layers in the Transformer encoder.
tie_word_embeddings (`bool`, *optional*, defaults to `False`):
Whether to tie input and output embeddings.
init_layernorm_from_vision_encoder (`bool`, *optional*, defaults to `False`):
Whether to init LayerNorm from the vision encoder.
text_config (`dict`, *optional*):
Dictionary of configuration options used to initialize [`BridgeTowerTextConfig`].
vision_config (`dict`, *optional*):
Dictionary of configuration options used to initialize [`BridgeTowerVisionConfig`].
Example:
```python
>>> from transformers import BridgeTowerModel, BridgeTowerConfig
>>> # Initializing a BridgeTower BridgeTower/bridgetower-base style configuration
>>> configuration = BridgeTowerConfig()
>>> # Initializing a model from the BridgeTower/bridgetower-base style configuration
>>> model = BridgeTowerModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "bridgetower"
def __init__(
self,
share_cross_modal_transformer_layers=True,
hidden_act="gelu",
hidden_size=768,
initializer_factor=1,
layer_norm_eps=1e-05,
share_link_tower_layers=False,
link_tower_type="add",
num_attention_heads=12,
num_hidden_layers=6,
tie_word_embeddings=False,
init_layernorm_from_vision_encoder=False,
text_config=None,
vision_config=None,
**kwargs,
):
# TODO: remove this once the Hub files are updated.
_ = kwargs.pop("text_config_dict", None)
_ = kwargs.pop("vision_config_dict", None)
super().__init__(**kwargs)
self.share_cross_modal_transformer_layers = share_cross_modal_transformer_layers
self.hidden_act = hidden_act
self.hidden_size = hidden_size
self.initializer_factor = initializer_factor
self.layer_norm_eps = layer_norm_eps
self.share_link_tower_layers = share_link_tower_layers
self.link_tower_type = link_tower_type
self.num_attention_heads = num_attention_heads
self.num_hidden_layers = num_hidden_layers
self.tie_word_embeddings = tie_word_embeddings
self.init_layernorm_from_vision_encoder = init_layernorm_from_vision_encoder
if text_config is None:
text_config = {}
logger.info("`text_config` is `None`. Initializing the `BridgeTowerTextConfig` with default values.")
if vision_config is None:
vision_config = {}
logger.info("`vision_config` is `None`. Initializing the `BridgeTowerVisionConfig` with default values.")
self.text_config = BridgeTowerTextConfig(**text_config)
self.vision_config = BridgeTowerVisionConfig(**vision_config)
@classmethod
def from_text_vision_configs(
cls, text_config: BridgeTowerTextConfig, vision_config: BridgeTowerVisionConfig, **kwargs
):
r"""
Instantiate a [`BridgeTowerConfig`] (or a derived class) from BridgeTower text model configuration. Returns:
[`BridgeTowerConfig`]: An instance of a configuration object
"""
return cls(text_config=text_config.to_dict(), vision_config=vision_config.to_dict(), **kwargs)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
output["text_config"] = self.text_config.to_dict()
output["vision_config"] = self.vision_config.to_dict()
output["model_type"] = self.__class__.model_type
return output
| 17,056 | 45.731507 | 129 | py |
transformers | transformers-main/src/transformers/models/bridgetower/image_processing_bridgetower.py | # coding=utf-8
# Copyright 2023 The Intel Labs Team Authors, The Microsoft Research Team Authors and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for BridgeTower."""
from typing import Any, Dict, Iterable, List, Optional, Tuple, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import PaddingMode, center_crop, normalize, pad, rescale, resize, to_channel_dimension_format
from ...image_utils import (
OPENAI_CLIP_MEAN,
OPENAI_CLIP_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_batched,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, is_vision_available, logging
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
# Copied from transformers.models.vilt.image_processing_vilt.max_across_indices
def max_across_indices(values: Iterable[Any]) -> List[Any]:
"""
Return the maximum value across all indices of an iterable of values.
"""
return [max(values_i) for values_i in zip(*values)]
# Copied from transformers.models.vilt.image_processing_vilt.make_pixel_mask
def make_pixel_mask(image: np.ndarray, output_size: Tuple[int, int]) -> np.ndarray:
"""
Make a pixel mask for the image, where 1 indicates a valid pixel and 0 indicates padding.
Args:
image (`np.ndarray`):
Image to make the pixel mask for.
output_size (`Tuple[int, int]`):
Output size of the mask.
"""
input_height, input_width = get_image_size(image)
mask = np.zeros(output_size, dtype=np.int64)
mask[:input_height, :input_width] = 1
return mask
# Copied from transformers.models.vilt.image_processing_vilt.get_max_height_width
def get_max_height_width(images: List[np.ndarray]) -> List[int]:
"""
Get the maximum height and width across all images in a batch.
"""
input_channel_dimension = infer_channel_dimension_format(images[0])
if input_channel_dimension == ChannelDimension.FIRST:
_, max_height, max_width = max_across_indices([img.shape for img in images])
elif input_channel_dimension == ChannelDimension.LAST:
max_height, max_width, _ = max_across_indices([img.shape for img in images])
else:
raise ValueError(f"Invalid channel dimension format: {input_channel_dimension}")
return (max_height, max_width)
# Copied from transformers.models.vilt.image_processing_vilt.get_resize_output_image_size
def get_resize_output_image_size(
input_image: np.ndarray, shorter: int = 800, longer: int = 1333, size_divisor: int = 32
) -> Tuple[int, int]:
input_height, input_width = get_image_size(input_image)
min_size, max_size = shorter, longer
scale = min_size / min(input_height, input_width)
if input_height < input_width:
new_height = min_size
new_width = scale * input_width
else:
new_height = scale * input_height
new_width = min_size
if max(new_height, new_width) > max_size:
scale = max_size / max(new_height, new_width)
new_height = scale * new_height
new_width = scale * new_width
new_height, new_width = int(new_height + 0.5), int(new_width + 0.5)
new_height = new_height // size_divisor * size_divisor
new_width = new_width // size_divisor * size_divisor
return new_height, new_width
class BridgeTowerImageProcessor(BaseImageProcessor):
r"""
Constructs a BridgeTower image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by the
`do_resize` parameter in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `288`):
Resize the shorter side of the input to `size["shortest_edge"]`. The longer side will be limited to under
`int((1333 / 800) * size["shortest_edge"])` while preserving the aspect ratio. Only has an effect if
`do_resize` is set to `True`. Can be overridden by the `size` parameter in the `preprocess` method.
size_divisor (`int`, *optional*, defaults to `32`):
The size by which to make sure both the height and width can be divided. Only has an effect if `do_resize`
is set to `True`. Can be overridden by the `size_divisor` parameter in the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use if resizing the image. Only has an effect if `do_resize` is set to `True`. Can be
overridden by the `resample` parameter in the `preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Only has an effect if `do_rescale` is set to `True`. Can be
overridden by the `rescale_factor` parameter in the `preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method. Can be overridden by the `do_normalize` parameter in the `preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method. Can be
overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
Can be overridden by the `image_std` parameter in the `preprocess` method.
do_center_crop (`bool`, *optional*, defaults to `True`):
Whether to center crop the image. Can be overridden by the `do_center_crop` parameter in the `preprocess`
method.
do_pad (`bool`, *optional*, defaults to `True`):
Whether to pad the image to the `(max_height, max_width)` of the images in the batch. Can be overridden by
the `do_pad` parameter in the `preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = 288,
size_divisor: int = 32,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_center_crop: bool = True,
do_pad: bool = True,
**kwargs,
) -> None:
if "pad_and_return_pixel_mask" in kwargs:
do_pad = kwargs.pop("pad_and_return_pixel_mask")
super().__init__(**kwargs)
size = size if size is not None else {"shortest_edge": 288}
size = get_size_dict(size, default_to_square=False)
self.do_resize = do_resize
self.size = size
self.size_divisor = size_divisor
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else OPENAI_CLIP_MEAN
self.image_std = image_std if image_std is not None else OPENAI_CLIP_STD
self.do_pad = do_pad
self.do_center_crop = do_center_crop
# Copied from transformers.models.vilt.image_processing_vilt.ViltImageProcessor.resize
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
size_divisor: int = 32,
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image.
Resizes the shorter side of the image to `size["shortest_edge"]` while preserving the aspect ratio. If the
longer side is larger than the max size `(int(`size["shortest_edge"]` * 1333 / 800))`, the longer side is then
resized to the max size while preserving the aspect ratio.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Controls the size of the output image. Should be of the form `{"shortest_edge": int}`.
size_divisor (`int`, defaults to 32):
The image is resized to a size that is a multiple of this value.
resample (`PILImageResampling` filter, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
size = get_size_dict(size, default_to_square=False)
if "shortest_edge" not in size:
raise ValueError(f"The `size` dictionary must contain the key `shortest_edge`. Got {size.keys()}")
shorter = size["shortest_edge"]
longer = int(1333 / 800 * shorter)
output_size = get_resize_output_image_size(image, shorter=shorter, longer=longer, size_divisor=size_divisor)
return resize(image, size=output_size, resample=resample, data_format=data_format, **kwargs)
# Copied from transformers.models.vilt.image_processing_vilt.ViltImageProcessor.rescale
def rescale(
self,
image: np.ndarray,
scale: Union[int, float],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Rescale an image by a scale factor. image = image * scale.
Args:
image (`np.ndarray`):
Image to rescale.
scale (`int` or `float`):
Scale to apply to the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return rescale(image, scale=scale, data_format=data_format, **kwargs)
def center_crop(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Center crop an image to (size["height"], size["width"]). If the input size is smaller than `size` along any
edge, the image is padded with 0's and then center cropped.
Args:
image (`np.ndarray`):
Image to center crop.
size (`Dict[str, int]`):
Size of the output image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
output_size = size["shortest_edge"]
return center_crop(image, size=(output_size, output_size), data_format=data_format, **kwargs)
# Copied from transformers.models.vilt.image_processing_vilt.ViltImageProcessor.normalize
def normalize(
self,
image: np.ndarray,
mean: Union[float, List[float]],
std: Union[float, List[float]],
data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Normalize an image. image = (image - image_mean) / image_std.
Args:
image (`np.ndarray`):
Image to normalize.
mean (`float` or `List[float]`):
Image mean.
std (`float` or `List[float]`):
Image standard deviation.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
return normalize(image, mean=mean, std=std, data_format=data_format, **kwargs)
def _pad_image(
self,
image: np.ndarray,
output_size: Tuple[int, int],
constant_values: Union[float, Iterable[float]] = 0,
data_format: Optional[ChannelDimension] = None,
) -> np.ndarray:
"""
Pad an image with zeros to the given size.
"""
input_height, input_width = get_image_size(image)
output_height, output_width = output_size
pad_bottom = output_height - input_height
pad_right = output_width - input_width
padding = ((0, pad_bottom), (0, pad_right))
padded_image = pad(
image, padding, mode=PaddingMode.CONSTANT, constant_values=constant_values, data_format=data_format
)
return padded_image
def pad(
self,
images: List[np.ndarray],
return_pixel_mask: bool = True,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Optional[ChannelDimension] = None,
) -> BatchFeature:
"""
Pads a batch of images with zeros to the size of largest height and width in the batch and optionally returns
their corresponding pixel mask.
Args:
images (`List[np.ndarray]`):
Batch of images to pad.
return_pixel_mask (`bool`, *optional*, defaults to `False`):
Whether to return the pixel mask.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
"""
pad_size = get_max_height_width(images)
padded_images = [
self._pad_image(image=image, output_size=pad_size, data_format=data_format) for image in images
]
data = {"pixel_values": padded_images}
if return_pixel_mask:
masks = [make_pixel_mask(image=image, output_size=pad_size) for image in images]
data["pixel_mask"] = masks
return BatchFeature(data=data, tensor_type=return_tensors)
def preprocess(
self,
images: ImageInput,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
size_divisor: Optional[int] = None,
resample: PILImageResampling = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: Optional[bool] = None,
do_center_crop: Optional[bool] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Controls the size of the image after `resize`. The shortest edge of the image is resized to
`size["shortest_edge"]` whilst preserving the aspect ratio. If the longest edge of this resized image
is > `int(size["shortest_edge"] * (1333 / 800))`, then the image is resized again to make the longest
edge equal to `int(size["shortest_edge"] * (1333 / 800))`.
size_divisor (`int`, *optional*, defaults to `self.size_divisor`):
The image is resized to a size that is a multiple of this value.
resample (`PILImageResampling`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. Only has an effect if `do_resize` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to normalize the image by if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to normalize the image by if `do_normalize` is set to `True`.
do_pad (`bool`, *optional*, defaults to `self.do_pad`):
Whether to pad the image to the (max_height, max_width) in the batch. If `True`, a pixel mask is also
created and returned.
do_center_crop (`bool`, *optional*, defaults to `self.do_center_crop`):
Whether to center crop the image. If the input size is smaller than `crop_size` along any edge, the
image is padded with 0's and then center cropped.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
size_divisor = size_divisor if size_divisor is not None else self.size_divisor
resample = resample if resample is not None else self.resample
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
do_pad = do_pad if do_pad is not None else self.do_pad
do_center_crop if do_center_crop is not None else self.do_center_crop
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False)
if not is_batched(images):
images = [images]
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if do_resize and size is None or resample is None:
raise ValueError("Size and resample must be specified if do_resize is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
if do_normalize and (image_mean is None or image_std is None):
raise ValueError("Image mean and std must be specified if do_normalize is True.")
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if do_resize:
images = [
self.resize(image=image, size=size, size_divisor=size_divisor, resample=resample) for image in images
]
if do_center_crop:
images = [self.center_crop(image=image, size=size) for image in images]
if do_rescale:
images = [self.rescale(image=image, scale=rescale_factor) for image in images]
if do_normalize:
images = [self.normalize(image=image, mean=image_mean, std=image_std) for image in images]
images = [to_channel_dimension_format(image, data_format) for image in images]
if do_pad:
encoded_outputs = self.pad(images, return_pixel_mask=True, return_tensors=return_tensors)
else:
encoded_outputs = BatchFeature(data={"pixel_values": images}, tensor_type=return_tensors)
return encoded_outputs
| 22,800 | 47.103376 | 129 | py |
transformers | transformers-main/src/transformers/models/bridgetower/__init__.py | # Copyright 2023 The Intel Labs Team Authors, The Microsoft Research Team Authors and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_bridgetower": [
"BRIDGETOWER_PRETRAINED_CONFIG_ARCHIVE_MAP",
"BridgeTowerConfig",
"BridgeTowerTextConfig",
"BridgeTowerVisionConfig",
],
"processing_bridgetower": ["BridgeTowerProcessor"],
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_bridgetower"] = ["BridgeTowerImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_bridgetower"] = [
"BRIDGETOWER_PRETRAINED_MODEL_ARCHIVE_LIST",
"BridgeTowerForContrastiveLearning",
"BridgeTowerForImageAndTextRetrieval",
"BridgeTowerForMaskedLM",
"BridgeTowerModel",
"BridgeTowerPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_bridgetower import (
BRIDGETOWER_PRETRAINED_CONFIG_ARCHIVE_MAP,
BridgeTowerConfig,
BridgeTowerTextConfig,
BridgeTowerVisionConfig,
)
from .processing_bridgetower import BridgeTowerProcessor
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_bridgetower import BridgeTowerImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_bridgetower import (
BRIDGETOWER_PRETRAINED_MODEL_ARCHIVE_LIST,
BridgeTowerForContrastiveLearning,
BridgeTowerForImageAndTextRetrieval,
BridgeTowerForMaskedLM,
BridgeTowerModel,
BridgeTowerPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 2,864 | 30.833333 | 129 | py |
transformers | transformers-main/src/transformers/models/bridgetower/processing_bridgetower.py | # coding=utf-8
# Copyright 2023 The Intel Labs Team Authors, The Microsoft Research Team Authors and HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for BridgeTower.
"""
from typing import List, Optional, Union
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import BatchEncoding, PaddingStrategy, PreTokenizedInput, TextInput, TruncationStrategy
from ...utils import TensorType
class BridgeTowerProcessor(ProcessorMixin):
r"""
Constructs a BridgeTower processor which wraps a Roberta tokenizer and BridgeTower image processor into a single
processor.
[`BridgeTowerProcessor`] offers all the functionalities of [`BridgeTowerImageProcessor`] and
[`RobertaTokenizerFast`]. See the docstring of [`~BridgeTowerProcessor.__call__`] and
[`~BridgeTowerProcessor.decode`] for more information.
Args:
image_processor (`BridgeTowerImageProcessor`):
An instance of [`BridgeTowerImageProcessor`]. The image processor is a required input.
tokenizer (`RobertaTokenizerFast`):
An instance of ['RobertaTokenizerFast`]. The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "BridgeTowerImageProcessor"
tokenizer_class = ("RobertaTokenizer", "RobertaTokenizerFast")
def __init__(self, image_processor, tokenizer):
super().__init__(image_processor, tokenizer)
def __call__(
self,
images,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs,
) -> BatchEncoding:
"""
This method uses [`BridgeTowerImageProcessor.__call__`] method to prepare image(s) for the model, and
[`RobertaTokenizerFast.__call__`] to prepare text for the model.
Please refer to the docstring of the above two methods for more information.
"""
encoding = self.tokenizer(
text=text,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
return_tensors=return_tensors,
**kwargs,
)
# add pixel_values + pixel_mask
encoding_image_processor = self.image_processor(
images, return_tensors=return_tensors, do_normalize=True, do_center_crop=True, **kwargs
)
encoding.update(encoding_image_processor)
return encoding
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to RobertaTokenizerFast's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to RobertaTokenizerFast's [`~PreTrainedTokenizer.decode`]. Please refer
to the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@property
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + image_processor_input_names))
| 5,056 | 41.495798 | 129 | py |
transformers | transformers-main/src/transformers/models/dinov2/configuration_dinov2.py | # coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" DINOv2 model configuration"""
from collections import OrderedDict
from typing import Mapping
from packaging import version
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
DINOV2_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"facebook/dinov2-base": "https://huggingface.co/facebook/dinov2-base/resolve/main/config.json",
}
class Dinov2Config(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`Dinov2Model`]. It is used to instantiate an
Dinov2 model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the Dinov2
[google/dinov2-base-patch16-224](https://huggingface.co/google/dinov2-base-patch16-224) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
mlp_ratio (`int`, *optional*, defaults to 4):
Ratio of the hidden size of the MLPs relative to the `hidden_size`.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-6):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to 224):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
layerscale_value (`float`, *optional*, defaults to 1.0):
Initial value to use for layer scale.
drop_path_rate (`float`, *optional*, defaults to 0.0):
Stochastic depth rate per sample (when applied in the main path of residual layers).
use_swiglu_ffn (`bool`, *optional*, defaults to `False`):
Whether to use the SwiGLU feedforward neural network.
Example:
```python
>>> from transformers import Dinov2Config, Dinov2Model
>>> # Initializing a Dinov2 dinov2-base-patch16-224 style configuration
>>> configuration = Dinov2Config()
>>> # Initializing a model (with random weights) from the dinov2-base-patch16-224 style configuration
>>> model = Dinov2Model(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "dinov2"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
mlp_ratio=4,
hidden_act="gelu",
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-6,
image_size=224,
patch_size=16,
num_channels=3,
qkv_bias=True,
layerscale_value=1.0,
drop_path_rate=0.0,
use_swiglu_ffn=False,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.mlp_ratio = mlp_ratio
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.qkv_bias = qkv_bias
self.layerscale_value = layerscale_value
self.drop_path_rate = drop_path_rate
self.use_swiglu_ffn = use_swiglu_ffn
class Dinov2OnnxConfig(OnnxConfig):
torch_onnx_minimum_version = version.parse("1.11")
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
return OrderedDict(
[
("pixel_values", {0: "batch", 1: "num_channels", 2: "height", 3: "width"}),
]
)
@property
def atol_for_validation(self) -> float:
return 1e-4
| 6,124 | 39.833333 | 117 | py |
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