repo stringlengths 2 99 | file stringlengths 13 225 | code stringlengths 0 18.3M | file_length int64 0 18.3M | avg_line_length float64 0 1.36M | max_line_length int64 0 4.26M | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
smt | smt-master/smt/surrogate_models/krg.py | """
Author: Dr. Mohamed A. Bouhlel <mbouhlel@umich.edu>
This package is distributed under New BSD license.
"""
from smt.surrogate_models.krg_based import KrgBased
from smt.utils.kriging import componentwise_distance
class KRG(KrgBased):
name = "Kriging"
def _initialize(self):
super()._initialize()
... | 921 | 25.342857 | 86 | py |
smt | smt-master/smt/surrogate_models/kplsk.py | """
Author: Dr. Mohamed A. Bouhlel <mbouhlel@umich.edu>
This package is distributed under New BSD license.
"""
from smt.surrogate_models import KPLS
from smt.utils.kriging import componentwise_distance_PLS, componentwise_distance
class KPLSK(KPLS):
name = "KPLSK"
def _initialize(self):
super()._ini... | 1,388 | 27.346939 | 86 | py |
smt | smt-master/smt/surrogate_models/rmtb.py | """
Author: Dr. John T. Hwang <hwangjt@umich.edu>
This package is distributed under New BSD license.
"""
import numpy as np
import scipy.sparse
from numbers import Integral
from smt.utils.linear_solvers import get_solver
from smt.utils.line_search import get_line_search_class
from smt.surrogate_models.rmts import RMT... | 4,507 | 33.945736 | 86 | py |
smt | smt-master/smt/surrogate_models/surrogate_model.py | """
Author: Dr. Mohamed A. Bouhlel <mbouhlel@umich.edu>
Dr. John T. Hwang <hwangjt@umich.edu>
This package is distributed under New BSD license.
Paul Saves : Mixed Integer
"""
from typing import Optional
import numpy as np
from collections import defaultdict
from abc import ABCMeta, abstractmethod
from smt.ut... | 18,858 | 31.571675 | 131 | py |
smt | smt-master/smt/surrogate_models/kpls.py | """
Author: Dr. Mohamed A. Bouhlel <mbouhlel@umich.edu>
This package is distributed under New BSD license.
"""
import numpy as np
from sklearn.cross_decomposition import PLSRegression as pls
from smt.surrogate_models.krg_based import KrgBased
from smt.utils.kriging import componentwise_distance_PLS
import warnings
... | 4,500 | 31.854015 | 112 | py |
smt | smt-master/smt/surrogate_models/__init__.py | from .ls import LS
from .qp import QP
from .krg import KRG
from .kpls import KPLS
from .gekpls import GEKPLS
from .kplsk import KPLSK
from .genn import GENN
from .mgp import MGP
from .krg_based import MixIntKernelType
from smt.utils.design_space import (
DesignSpace,
FloatVariable,
IntegerVariable,
Ord... | 535 | 18.851852 | 46 | py |
smt | smt-master/smt/surrogate_models/krg_based.py | """
Author: Dr. Mohamed Amine Bouhlel <mbouhlel@umich.edu>
Some functions are copied from gaussian_process submodule (Scikit-learn 0.14)
This package is distributed under New BSD license.
"""
import numpy as np
from enum import Enum
from scipy import linalg, optimize
from copy import deepcopy
import warnings
from smt.... | 72,518 | 36.987952 | 163 | py |
smt | smt-master/smt/surrogate_models/qp.py | """
Author: Dr. Mohamed Amine Bouhlel <mbouhlel@umich.edu>
Dr. Nathalie.bartoli <nathalie@onera.fr>
This package is distributed under New BSD license.
TO DO:
- define outputs['sol'] = self.sol
"""
import numpy as np
import scipy
from smt.surrogate_models.surrogate_model import SurrogateModel
from smt.uti... | 4,775 | 28.300613 | 98 | py |
smt | smt-master/smt/surrogate_models/tests/test_krg_het_noise.py | """
Author: Andres Lopez-Lopera <<andres.lopez_lopera@onera.fr>>
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models import KRG
from smt.utils.sm_test_case import SMTestCase
from smt.utils import compute_rms_error
class Test(SMTestCase):
def test_... | 1,072 | 27.236842 | 86 | py |
smt | smt-master/smt/surrogate_models/tests/test_kpls.py | """
Author: Remi Lafage <<remi.lafage@onera.fr>>
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models import KPLS
from smt.problems import Sphere
from smt.sampling_methods import FullFactorial, LHS
class TestKPLS(unittest.TestCase):
def test_predict... | 2,294 | 30.875 | 88 | py |
smt | smt-master/smt/surrogate_models/tests/test_mgp.py | """
Author: Remi Lafage <<remi.lafage@onera.fr>>
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models import MGP
from smt.problems import Sphere
from smt.sampling_methods import FullFactorial, LHS
class TestMGP(unittest.TestCase):
def test_predict_o... | 1,659 | 28.122807 | 78 | py |
smt | smt-master/smt/surrogate_models/tests/test_krg_based.py | """
Author: Remi Lafage <<remi.lafage@onera.fr>>
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models.krg_based import KrgBased
class TestKrgBased(unittest.TestCase):
def test_theta0_default_init(self):
krg = KrgBased()
krg.set_trai... | 1,127 | 30.333333 | 84 | py |
smt | smt-master/smt/surrogate_models/tests/test_rmts.py | """
Author: Remi Lafage <<remi.lafage@onera.fr>>
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
import matplotlib.pyplot as plt
from smt.utils.silence import Silence
from smt.utils.sm_test_case import SMTestCase
from smt.utils import compute_rms_error
from smt.surrogate_mod... | 2,291 | 26.614458 | 84 | py |
smt | smt-master/smt/surrogate_models/tests/test_krg_training.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Mon Mar 23 15:20:29 2020
@author: ninamoello
"""
from __future__ import print_function, division
import numpy as np
import unittest
from smt.utils.sm_test_case import SMTestCase
from smt.utils.kriging import (
pow_exp,
abs_exp,
squar_exp,
a... | 11,319 | 35.050955 | 88 | py |
smt | smt-master/smt/surrogate_models/tests/test_surrogate_model_examples.py | """
Author: John Hwang <<hwangjt@umich.edu>>
This package is distributed under New BSD license.
"""
import unittest
import matplotlib
matplotlib.use("Agg")
try:
from smt.surrogate_models import IDW, RBF, RMTB, RMTC
compiled_available = True
except:
compiled_available = False
class Test(unittest.Test... | 18,375 | 28.354633 | 104 | py |
smt | smt-master/smt/surrogate_models/tests/test_qp.py | """
Author: Remi Lafage <<remi.lafage@onera.fr>>, Frederic Zahle
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models import QP, KRG
from smt.examples.rans_crm_wing.rans_crm_wing import (
get_rans_crm_wing,
plot_rans_crm_wing,
)
class TestQP(un... | 818 | 25.419355 | 70 | py |
smt | smt-master/smt/surrogate_models/tests/__init__.py | 0 | 0 | 0 | py | |
smt | smt-master/smt/surrogate_models/tests/test_krg_predictions.py | """
Authors: Nathalie Bartoli, Paul Saves
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models import KRG
from smt.sampling_methods import LHS
from smt.utils.sm_test_case import SMTestCase
class Test(SMTestCase):
def setUp(self):
def pb(x):... | 6,514 | 34.026882 | 84 | py |
smt | smt-master/smt/surrogate_models/tests/test_krg_outputs.py | """
Author: Remi Lafage <<remi.lafage@onera.fr>>
This package is distributed under New BSD license.
"""
import unittest
import numpy as np
from smt.surrogate_models import KRG
from smt.problems import Sphere
from smt.sampling_methods import FullFactorial, LHS
class TestKRG(unittest.TestCase):
def test_predict_o... | 1,347 | 25.431373 | 70 | py |
smt | smt-master/smt/applications/mfk.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 04 10:26:49 2018
@author: Mostafa Meliani <melimostafa@gmail.com>
Multi-Fidelity co-Kriging: recursive formulation with autoregressive model of
order 1 (AR1)
Adapted on January 2021 by Andres Lopez-Lopera to the new SMT version
"""
from copy import deepcopy
import numpy... | 27,471 | 35.776439 | 141 | py |
smt | smt-master/smt/applications/application.py | """
Author: Dr. Mohamed Amine Bouhlel <mbouhlel@umich.edu>, R. Lafage
This package is distributed under New BSD license.
"""
from smt.utils.options_dictionary import OptionsDictionary
from smt.surrogate_models import LS, QP, KPLS, KRG, KPLSK, GEKPLS, MGP
try:
from smt.surrogate_models import IDW, RBF, RMTC, RMTB... | 2,127 | 27 | 99 | py |
smt | smt-master/smt/applications/vfm.py | """
Author: Dr. Mohamed Amine Bouhlel <mbouhlel@umich.edu>, R. Lafage
This package is distributed under New BSD license.
Variable-fidelity modeling: two types of bridge functions are available; i.e.,
additive and multiplicative
"""
import numpy as np
from smt.utils.options_dictionary import OptionsDictionary
from t... | 9,813 | 34.557971 | 97 | py |
smt | smt-master/smt/applications/moe.py | """
Author: Remi Lafage <remi.lafage@onera.fr>
This package is distributed under New BSD license.
Mixture of Experts
"""
# TODO : support for best number of clusters
# TODO : implement verbosity 'print_global'
# TODO : documentation
import numpy as np
import warnings
OLD_SKLEARN = False
try: # scikit-learn < 0.20.... | 25,371 | 31.695876 | 109 | py |
smt | smt-master/smt/applications/mfkplsk.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 04 10:26:49 2018
@author: Mostafa Meliani <melimostafa@gmail.com>
Multi-Fidelity co-Kriging: recursive formulation with autoregressive model of order 1 (AR1)
Partial Least Square decomposition added on highest fidelity level
KPLSK model combined PLS followed by a Krging m... | 2,074 | 31.421875 | 103 | py |
smt | smt-master/smt/applications/__init__.py | from .vfm import VFM
from .moe import MOE, MOESurrogateModel
from .mfk import MFK, NestedLHS
from .mfkpls import MFKPLS
from .mfkplsk import MFKPLSK
from .ego import EGO, Evaluator
| 181 | 25 | 39 | py |
smt | smt-master/smt/applications/mixed_integer.py | """
Author: Remi Lafage <remi.lafage@onera.fr>
This package is distributed under New BSD license.
"""
import numpy as np
from smt.surrogate_models.surrogate_model import SurrogateModel
from smt.sampling_methods.sampling_method import SamplingMethod
from smt.utils.checks import ensure_2d_array
from smt.surrogate_model... | 12,226 | 34.44058 | 163 | py |
smt | smt-master/smt/applications/mfkpls.py | # -*- coding: utf-8 -*-
"""
Created on Fri May 04 10:26:49 2018
@author: Mostafa Meliani <melimostafa@gmail.com>
Multi-Fidelity co-Kriging: recursive formulation with autoregressive model of order 1 (AR1)
Partial Least Square decomposition added on highest fidelity level
Adapted on March 2020 by Nathalie Bartoli to th... | 2,313 | 32.057143 | 120 | py |
smt | smt-master/smt/applications/ego.py | """
Authors: Nathalie Bartoli, Remy Priem, Remi Lafage, Emile Roux <emile.roux@univ-smb.fr>
This package is distributed under New BSD license.
"""
import numpy as np
from types import FunctionType
from scipy.stats import norm
from scipy.optimize import minimize
from smt.surrogate_models import KPLS, KRG, KPLSK, M... | 14,811 | 33.446512 | 102 | py |
smt | smt-master/smt/applications/tests/test_mfkpls.py | # -*- coding: utf-8 -*-
"""
Created on Mon May 07 14:20:11 2018
@author: m.meliani
Adapted to new SMT version in march 2020 by Nathalie Bartoli
"""
import matplotlib
matplotlib.use("Agg")
import unittest
import numpy as np
import unittest
import inspect
from collections import OrderedDict
from smt.problems impor... | 6,025 | 27.027907 | 83 | py |
smt | smt-master/smt/applications/tests/test_mfkplsk.py | # -*- coding: utf-8 -*-
"""
Created on Mon May 07 14:20:11 2018
@author: m.meliani
Adapted to new SMT version in march 2020 by Nathalie Bartoli
"""
import matplotlib
matplotlib.use("Agg")
import unittest
import numpy as np
import unittest
import inspect
from collections import OrderedDict
from smt.problems impor... | 6,062 | 26.811927 | 84 | py |
smt | smt-master/smt/applications/tests/test_ego.py | # coding: utf-8
"""
Author: Remi Lafage <remi.lafage@onera.fr> and Nathalie Bartoli
This package is distributed under New BSD license.
"""
import warnings
warnings.filterwarnings("ignore")
import os
import unittest
import numpy as np
from sys import argv
import matplotlib
matplotlib.use("Agg")
from smt.applications... | 43,079 | 32.525292 | 98 | py |
smt | smt-master/smt/applications/tests/test_mfk_variance.py | # -*- coding: utf-8 -*-
"""
Created on Mon Apr 27 15:36:13 2020
@author: Vincent Drouet and Nathalie Bartoli
in order to validate the variance formula for multifidelity on the branin 2D function
Comparisons are based on the paper Le Gratiet et Cannamela 2015 :
Le Gratiet, L., & Cannamela, C. (2015).
Cokriging-... | 16,153 | 33.080169 | 88 | py |
smt | smt-master/smt/applications/tests/test_vfm.py | """
Author: Mohamed Amine Bouhlel <mbouhlel@umich.edu>
This package is distributed under New BSD license.
"""
import unittest
import matplotlib
matplotlib.use("Agg")
import numpy as np
from scipy import linalg
from smt.utils.sm_test_case import SMTestCase
from smt.utils import compute_rms_error
from smt.utils.silen... | 7,530 | 29.366935 | 88 | py |
smt | smt-master/smt/applications/tests/test_mfk_1fidelity.py | import matplotlib
matplotlib.use("Agg")
import unittest
import numpy as np
import unittest
from smt.problems import TensorProduct
from smt.sampling_methods import LHS
from smt.utils.sm_test_case import SMTestCase
from smt.utils.silence import Silence
from smt.utils import compute_rms_error
from smt.applications.mfk... | 2,882 | 24.741071 | 70 | py |
smt | smt-master/smt/applications/tests/test_mfk.py | # -*- coding: utf-8 -*-
"""
Created on Mon May 07 14:20:11 2018
@author: m.meliani
"""
import matplotlib
matplotlib.use("Agg")
import unittest
import numpy as np
import unittest
import inspect
from collections import OrderedDict
from smt.problems import Sphere, TensorProduct
from smt.sampling_methods import LHS, ... | 5,714 | 26.742718 | 74 | py |
smt | smt-master/smt/applications/tests/__init__.py | 0 | 0 | 0 | py | |
smt | smt-master/smt/applications/tests/test_mixed_integer.py | """
Created on Tue Oct 12 10:48:01 2021
@author: psaves
"""
import unittest
import numpy as np
import matplotlib
import itertools
matplotlib.use("Agg")
from smt.applications.mixed_integer import (
MixedIntegerContext,
MixedIntegerSamplingMethod,
MixedIntegerKrigingModel,
)
from smt.problems import Sphere... | 55,817 | 31.584939 | 116 | py |
smt | smt-master/smt/applications/tests/test_moe.py | """
Author: Remi Lafage <remi.lafage@onera.fr>
This package is distributed under New BSD license.
"""
import matplotlib
matplotlib.use("Agg")
import unittest
import numpy as np
from sys import argv
from smt.applications import MOE, MOESurrogateModel
from smt.utils.sm_test_case import SMTestCase
from smt.problems i... | 16,658 | 29.344262 | 99 | py |
smt | smt-master/doc/preprocess_test.py | """
Author: Dr. John T. Hwang <hwangjt@umich.edu>
This package is distributed under New BSD license.
"""
import os, sys
import inspect
import importlib
import contextlib
try:
from StringIO import StringIO
except:
from io import StringIO
import matplotlib
matplotlib.use("Agg")
import matplotlib.pypl... | 3,771 | 27.793893 | 81 | py |
smt | smt-master/doc/preprocess_options.py | """
Author: Dr. John T. Hwang <hwangjt@umich.edu>
This package is distributed under New BSD license.
"""
def process_options(root, file_name, iline, line):
file_path = root + "/" + file_name
embed_num_indent = line.find(".. embed-options-table")
if "embed-options-table-surrogate_models" in line:
... | 3,088 | 31.861702 | 86 | py |
smt | smt-master/doc/conf.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# SMT documentation build configuration file, created by
# sphinx-quickstart on Sun Aug 6 19:36:14 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autoge... | 5,197 | 28.873563 | 79 | py |
smt | smt-master/doc/preprocess.py | """
Author: Dr. John T. Hwang <hwangjt@umich.edu>
This package is distributed under New BSD license.
"""
import os
from preprocess_test import process_test
from preprocess_options import process_options
def get_file_paths():
file_paths_list = []
file_paths_list_rstx = []
file_paths_list_py = []... | 1,505 | 27.415094 | 76 | py |
smt | smt-master/doc/embed_directives/directive_embed_options.py | from sphinx_auto_embed.directive import Directive
class DirectiveEmbedOptions(Directive):
"""
Directive for embedding a table from an OptionsDictionary instance.
The 3 arguments are the module name, class name, and attribute name.
"""
NAME = "embed-options-table"
NUM_ARGS = 3
def run(se... | 2,419 | 37.412698 | 88 | py |
pyzor | pyzor-master/setup.py | import sys
import setuptools
import distutils.core
import pyzor
long_description = """
Pyzor is spam-blocking networked system that uses spam signatures
to identify them.
"""
classifiers = ["Operating System :: POSIX",
"Operating System :: Microsoft :: Windows",
"Environment :: Console... | 1,532 | 28.480769 | 75 | py |
pyzor | pyzor-master/web/application.py | #! /usr/bin/env python
import os
import email
import socket
import logging
import smtplib
import datetime
import email.utils
import email.mime.base
import email.mime.text
import email.mime.multipart
try:
import configparser as ConfigParser
except ImportError:
import ConfigParser
import flask
from flask_wtf.f... | 8,333 | 31.940711 | 80 | py |
pyzor | pyzor-master/pyzor/message.py | """This modules contains the various messages used in the pyzor client server
communication.
"""
import random
import email.message
import pyzor
class Message(email.message.Message):
def __init__(self):
email.message.Message.__init__(self)
self.setup()
def setup(self):
pass
def... | 4,023 | 23.993789 | 77 | py |
pyzor | pyzor-master/pyzor/digest.py | """Handle digesting the messages."""
from __future__ import print_function
import re
import sys
import codecs
import hashlib
try:
import HTMLParser
except ImportError:
import html.parser as HTMLParser
# Hard-coded for the moment.
digest_spec = ([(20, 3), (60, 3)])
HASH = hashlib.sha1
HASH_SIZE = len(HASH(b... | 6,107 | 30.979058 | 76 | py |
pyzor | pyzor-master/pyzor/server.py | """Networked spam-signature detection server.
The server receives the request in the form of a RFC5321 message, and
responds with another RFC5321 message. Neither of these messages has a
body - all of the data is encapsulated in the headers.
The response headers will always include a "Code" header, which is a
HTTP-s... | 15,776 | 37.574572 | 79 | py |
pyzor | pyzor-master/pyzor/account.py | """A collection of utilities that facilitate working with Pyzor accounts.
Note that accounts are not necessary (on the client or server), as an
"anonymous" account always exists."""
import time
import hashlib
import pyzor
def sign_msg(hashed_key, timestamp, msg, hash_=hashlib.sha1):
"""Converts the key, timest... | 2,546 | 30.8375 | 74 | py |
pyzor | pyzor-master/pyzor/config.py | """Functions that handle parsing pyzor configuration files."""
import os
import re
import logging
import collections
try:
import sentry_sdk
_has_sentry = True
except ImportError:
_has_sentry = False
import pyzor.account
_COMMENT_P = re.compile(r"((?<=[^\\])#.*)")
# Configuration files for the Pyzor Se... | 9,034 | 34.155642 | 85 | py |
pyzor | pyzor-master/pyzor/client.py | """Networked spam-signature detection client.
>>> import pyzor
>>> import pyzor.client
>>> import pyzor.digest
>>> import pyzor.config
To load the accounts file:
>>> accounts = pyzor.config.load_accounts(filename)
To create a client (to then issue commands):
>>> client = pyzor.client.Client(accounts)
To create a ... | 10,826 | 33.262658 | 78 | py |
pyzor | pyzor-master/pyzor/__init__.py | """Networked spam-signature detection."""
__author__ = "Frank J. Tobin, ftobin@neverending.org"
__credits__ = "Tony Meyer, Dreas von Donselaar, all the Pyzor contributors."
__version__ = "1.1.1"
import hashlib
proto_name = 'pyzor'
proto_version = 2.1
anonymous_user = 'anonymous'
# We would like to use sha512, but t... | 1,410 | 23.327586 | 76 | py |
pyzor | pyzor-master/pyzor/forwarder.py | """Manage the forwarder process."""
import logging
import threading
try:
import Queue
except ImportError:
import queue as Queue
class Forwarder(object):
"""Forwards digest to remote pyzor servers"""
def __init__(self, forwarding_client, remote_servers,
max_queue_size=10000):
... | 2,568 | 34.191781 | 79 | py |
pyzor | pyzor-master/pyzor/engines/redis_.py | """Redis database engine."""
import time
import logging
import datetime
import functools
try:
import redis
_has_redis = True
except ImportError:
redis = None
_has_redis = False
from pyzor.engines.common import *
VERSION = "1"
NAMESPACE = "pyzord.digest_v%s" % VERSION
def encode_date(date):
"""... | 6,235 | 31.310881 | 80 | py |
pyzor | pyzor-master/pyzor/engines/gdbm_.py | """Gdbm database engine."""
try:
import gdbm as gdbm
_has_gdbm = True
except ImportError:
try:
import dbm.gnu as gdbm
_has_gdbm = True
except ImportError:
_has_gdbm = False
import time
import logging
import datetime
import threading
from pyzor.engines.common import Record, DBH... | 6,609 | 30.327014 | 79 | py |
pyzor | pyzor-master/pyzor/engines/mysql.py | """MySQLdb database engine."""
import time
import logging
import datetime
import itertools
import functools
import threading
try:
import Queue
except ImportError:
import queue as Queue
try:
import MySQLdb
import MySQLdb.cursors
_has_mysql = True
except ImportError:
_has_mysql = False
from py... | 12,438 | 34.438746 | 78 | py |
pyzor | pyzor-master/pyzor/engines/redis_v0.py | """Redis database engine.
XXX Deprecated version.
"""
import logging
import datetime
import functools
try:
import redis
_has_redis = True
except ImportError:
redis = None
_has_redis = False
from pyzor.engines.common import *
NAMESPACE = "pyzord.digest"
encode_date = lambda d: "" if d is None else... | 4,666 | 29.703947 | 80 | py |
pyzor | pyzor-master/pyzor/engines/common.py | """Common library shared by different engines."""
import sys
import datetime
from collections import namedtuple
__all__ = ["DBHandle", "DatabaseError", "Record", "BaseEngine"]
DBHandle = namedtuple("DBHandle", ["single_threaded", "multi_threaded",
"multi_processing", "prefork"])
... | 3,190 | 28.009091 | 79 | py |
pyzor | pyzor-master/pyzor/engines/__init__.py | """Database backends for pyzord.
The database class must expose a dictionary-like interface, allowing access
via __getitem__, __setitem__, and __delitem__. The key will be a forty
character string, and the value should be an instance of the Record class.
If the database backend cannot store the Record objects native... | 891 | 30.857143 | 75 | py |
pyzor | pyzor-master/pyzor/hacks/py3.py | """Hacks for python2-3 compatibility."""
import sys
def reload(module):
"""Reload the modeule.
This is handled differently according to the
python version. This even varies across Python3
versions
"""
if sys.version_info[0] == 2:
# Built-in method
return reload(module)
el... | 506 | 22.045455 | 63 | py |
pyzor | pyzor-master/pyzor/hacks/__init__.py | """Various hack to make pyzor compatible with different Python versions."""
| 76 | 37.5 | 75 | py |
pyzor | pyzor-master/pyzor/hacks/py26.py | """Hacks for Python 2.6"""
__all__ = ["hack_all", "hack_email", "hack_select"]
def hack_all(email=True, select=True):
"""Apply all Python 2.6 patches."""
if email:
hack_email()
if select:
hack_select()
def hack_email():
"""The python2.6 version of email.message_from_string, doesn't ... | 1,258 | 26.977778 | 76 | py |
pyzor | pyzor-master/scripts/summarise.py | #! /usr/bin/env python
# -*- coding: utf-8 -*-
"""Summarise Pyzor database.
Generate a summary of the current state of a Pyzor database.
This currently only works with a MySQL (or compatible) database.
This can currently only output to a Slack channel.
There are extra requirements for this script:
* click
* requ... | 6,995 | 29.819383 | 87 | py |
pyzor | pyzor-master/tests/__init__.py | """Package reserved for tests and test utilities."""
import unittest
def suite():
"""Gather all the tests from this package in a test suite."""
import tests.unit as unit
import tests.functional as functional
test_suite = unittest.TestSuite()
test_suite.addTest(unit.suite())
test_suite.addTe... | 433 | 20.7 | 65 | py |
pyzor | pyzor-master/tests/unit/test_forwarder.py | """Test the pyzor.forwarder module
"""
import time
import unittest
import threading
try:
from unittest.mock import call, Mock
except ImportError:
from mock import call, Mock
import pyzor.forwarder
class ForwarderTest(unittest.TestCase):
def setUp(self):
unittest.TestCase.setUp(self)
def te... | 2,352 | 32.614286 | 106 | py |
pyzor | pyzor-master/tests/unit/test_account.py | """Test the pyzor.account module"""
import io
import os
import time
import email
import hashlib
import unittest
import pyzor
import pyzor.config
import pyzor.account
class AccountTest(unittest.TestCase):
def setUp(self):
unittest.TestCase.setUp(self)
self.timestamp = 1381219396
self.msg ... | 8,254 | 39.665025 | 104 | py |
pyzor | pyzor-master/tests/unit/test_config.py | import os
import logging
import unittest
try:
import configparser as ConfigParser
except ImportError:
import ConfigParser
try:
from unittest.mock import patch, Mock
except ImportError:
from mock import patch, Mock
import pyzor.config
from tests.util import mock_open
class MockData(list):
def c... | 9,903 | 30.948387 | 74 | py |
pyzor | pyzor-master/tests/unit/test_server.py | """Test the pyzor.server module
"""
import io
import sys
import time
import logging
import unittest
try:
import socketserver as SocketServer
except ImportError:
import SocketServer
from datetime import datetime, timedelta
try:
from unittest.mock import patch
except ImportError:
from mock import patch
... | 14,225 | 34.654135 | 81 | py |
pyzor | pyzor-master/tests/unit/test_client.py | import time
import email
import unittest
try:
from unittest.mock import Mock, patch, call
except ImportError:
from mock import Mock, patch, call
import pyzor.client
import pyzor.account
class TestBase(unittest.TestCase):
def setUp(self):
unittest.TestCase.setUp(self)
self.thread = 3371... | 12,149 | 30.889764 | 82 | py |
pyzor | pyzor-master/tests/unit/__init__.py | """A suite of unit tests that verifies the correct behaviour of various
functions/methods in the pyzord code.
Note these tests the source of pyzor, not the version currently installed.
"""
import unittest
def suite():
"""Gather all the tests from this package in a test suite."""
import test_client
impor... | 897 | 26.212121 | 74 | py |
pyzor | pyzor-master/tests/unit/test_digest.py | """The the pyzor.digest module
"""
import unittest
import pyzor.digest
from pyzor.digest import *
try:
from unittest.mock import patch, Mock, call
except ImportError:
from mock import patch, Mock, call
HTML_TEXT = """<html><head><title>Email spam</title></head><body>
<p><b>Email spam</b>, also known as <b>j... | 11,210 | 35.399351 | 129 | py |
pyzor | pyzor-master/tests/unit/test_engines/test_redis.py | """Test the pyzor.engines.gdbm_ module."""
import time
import logging
import unittest
from datetime import datetime
try:
from unittest.mock import Mock, patch, call
except ImportError:
from mock import Mock, patch, call
import pyzor.engines.redis_
import pyzor.engines.common
class EncodingRedisTest(unittes... | 8,064 | 34.528634 | 90 | py |
pyzor | pyzor-master/tests/unit/test_engines/test_mysql.py | """Test the pyzor.engines.mysql module."""
import unittest
import threading
from datetime import datetime, timedelta
import pyzor.engines
import pyzor.engines.mysql
import pyzor.engines.common
class MockTimer():
def __init__(self, *args, **kwargs):
pass
def start(self):
pass
def setDaemo... | 6,907 | 33.368159 | 83 | py |
pyzor | pyzor-master/tests/unit/test_engines/test_gdbm.py | """Test the pyzor.engines.gdbm_ module."""
import sys
import time
import unittest
import threading
from datetime import datetime, timedelta
import pyzor.engines.gdbm_
import pyzor.engines.common
class MockTimer():
def __init__(self, *args, **kwargs):
pass
def start(self):
pass
def setDae... | 5,304 | 29.843023 | 94 | py |
pyzor | pyzor-master/tests/unit/test_engines/test_redis_v0.py | """Test the pyzor.engines.gdbm_ module."""
import unittest
from datetime import datetime
import pyzor.engines.redis_v0
import pyzor.engines.common
class EncodingRedisTest(unittest.TestCase):
"""Test the RedisDBHandle class"""
r_count = 24
wl_count = 42
entered = datetime(2014, 4, 23, 15, 41, 30)
... | 7,898 | 36.084507 | 83 | py |
pyzor | pyzor-master/tests/unit/test_engines/__init__.py | """A suite of unit tests that verifies the correct behaviour of various
functions/methods in the pyzord code.
Note these tests the source of pyzor, not the version currently installed.
"""
import unittest
def suite():
"""Gather all the tests from this package in a test suite."""
import test_gdbm
import ... | 682 | 23.392857 | 74 | py |
pyzor | pyzor-master/tests/util/__init__.py | """This package contains various utilities use in the pyzor tests."""
import os
import sys
import time
import redis
import shutil
import unittest
import subprocess
from datetime import datetime
try:
from unittest.mock import mock_open as _mock_open
except ImportError:
from mock import mock_open as _mock_open... | 14,111 | 36.73262 | 132 | py |
pyzor | pyzor-master/tests/benchmark/__init__.py | 0 | 0 | 0 | py | |
pyzor | pyzor-master/tests/benchmark/measure_server_response.py | from __future__ import division
import json
import Queue
import timeit
import optparse
import threading
import collections
DIGEST = "da39a3ee5e6b4b0d3255bfef95601890afd80709"
SETUP = """
import pyzor
import string
import random
import hashlib
import pyzor.client
digest = "".join(random.choice(string.letters) for _ ... | 4,339 | 27.552632 | 79 | py |
pyzor | pyzor-master/tests/functional/test_forwarder.py | import os
import time
import shutil
import unittest
import subprocess
import redis
class ForwardSetup(object):
"""Setup forwarding client and 'remote' pyzord"""
def write_homedir_file(self, name, content):
if not name or not content:
return
with open(os.path.join(self.homedir, nam... | 4,002 | 35.390909 | 191 | py |
pyzor | pyzor-master/tests/functional/test_account.py | import unittest
from tests.util import *
class AccountPyzorTest(PyzorTestBase):
# test bob which has access to everything
def test_ping(self):
self.check_pyzor("ping", "bob", code=200, exit_code=0)
def test_pong(self):
self.check_pyzor("pong", "bob", input=msg, code=200, exit_code=0)... | 4,999 | 34.971223 | 84 | py |
pyzor | pyzor-master/tests/functional/test_pyzor.py | import io
import sys
import redis
import unittest
from tests.util import *
MBOX_FILE_PATH = os.path.join(os.path.dirname(os.path.abspath(__file__)), "test_data", "test.mbx")
class PyzorScriptTest(PyzorTestBase):
password_file = None
access = """ALL : anonymous : allow
"""
def test_report_threshold(self... | 11,584 | 49.58952 | 112 | py |
pyzor | pyzor-master/tests/functional/test_server.py | import sys
import time
import errno
import unittest
try:
import configparser as ConfigParser
except ImportError:
import ConfigParser
import pyzor.client
from tests.util import *
try:
import MySQLdb
has_mysql = True
except ImportError:
has_mysql = False
try:
import redis
has_redis = True
... | 7,853 | 31.188525 | 70 | py |
pyzor | pyzor-master/tests/functional/__init__.py | """A suite of functional tests that verifies the correct behaviour of the
pyzor client and server as a whole.
Functional test should not touch real data and are usually safe, but it's not
recommended to run theses on production servers.
Note these tests the installed version of pyzor, not the version from the
sourc... | 964 | 26.571429 | 77 | py |
pyzor | pyzor-master/tests/functional/test_digest.py | # -*- coding: utf-8 -*-
import sys
import hashlib
import unittest
from tests.util import *
TEXT = """MIME-Version: 1.0
Sender: chirila@spamexperts.com
Received: by 10.216.90.129 with HTTP; Fri, 23 Aug 2013 01:59:03 -0700 (PDT)
Date: Fri, 23 Aug 2013 11:59:03 +0300
Delivered-To: chirila@spamexperts.com
X-Google-Sender... | 56,344 | 56.029352 | 206 | py |
pyzor | pyzor-master/tests/functional/test_engines/test_redis.py | import unittest
try:
import redis
has_redis = True
except ImportError:
has_redis = False
from tests.util import *
@unittest.skipIf(not has_redis, "redis library not available")
class RedisPyzorTest(PyzorTest, PyzorTestBase):
"""Test the redis engine"""
dsn = "localhost,,,10"
engine = "redis"... | 1,306 | 24.627451 | 68 | py |
pyzor | pyzor-master/tests/functional/test_engines/test_mysql.py | import unittest
try:
import configparser as ConfigParser
except ImportError:
import ConfigParser
from tests.util import *
try:
import MySQLdb
has_mysql = True
except ImportError:
has_mysql = False
schema = """
CREATE TABLE IF NOT EXISTS `%s` (
`digest` char(40) default NULL,
`r_count`... | 3,987 | 31.16129 | 79 | py |
pyzor | pyzor-master/tests/functional/test_engines/test_gdbm.py | import unittest
from tests.util import *
try:
import gdbm
has_gdbm = True
except ImportError:
has_gdbm = False
@unittest.skipIf(not has_gdbm, "gdbm library not available")
class GdbmPyzorTest(PyzorTest, PyzorTestBase):
"""Test the gdbm engine"""
dsn = "pyzord.db"
engine = "gdbm"
class Thread... | 1,009 | 25.578947 | 67 | py |
pyzor | pyzor-master/tests/functional/test_engines/__init__.py | """A suite of functional tests that verifies the correct behaviour of the
pyzor client and server as a whole.
Functional test should not touch real data and are usually safe, but it's not
recommended to run theses on production servers.
Note these tests the installed version of pyzor, not the version from the
source.... | 745 | 24.724138 | 77 | py |
pyzor | pyzor-master/docs/conf.py | # -*- coding: utf-8 -*-
#
# Pyzor documentation build configuration file, created by
# sphinx-quickstart on Sat Jun 7 15:20:07 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All... | 8,310 | 30.244361 | 79 | py |
MINDER | MINDER-main/setup.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from distutils.core import setup, Extension
import os
extra_compile_args = ["-std=c++11", "-DNDEBUG", "-O3"]
extension =... | 810 | 26.965517 | 77 | py |
MINDER | MINDER-main/scripts/build_fm_index.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import csv
import logging
import multiprocessing
import re
import ftfy
import torch
import tqdm
import pic... | 7,216 | 29.974249 | 136 | py |
MINDER | MINDER-main/scripts/training/make_supervised_msmarco_dataset2.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from argparse import ArgumentParser
from collections import defaultdict
import json
import multiprocessing
import random
im... | 10,873 | 33.302839 | 135 | py |
MINDER | MINDER-main/scripts/training/make_supervised_msmarco_dataset3.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from argparse import ArgumentParser
from collections import defaultdict
import json
import multiprocessing
import random
im... | 10,873 | 33.302839 | 135 | py |
MINDER | MINDER-main/scripts/training/make_generated_dataset.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import csv
import random
import tqdm
import pickle
from nltk.corpus import stopwords
from random import sam... | 7,389 | 32.139013 | 110 | py |
MINDER | MINDER-main/scripts/training/make_generated_dataset3.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import csv
import random
import tqdm
import pickle
from nltk.corpus import stopwords
from random import sam... | 8,962 | 31.711679 | 140 | py |
MINDER | MINDER-main/scripts/training/make_supervised_dpr_dataset.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from argparse import ArgumentParser
from collections import defaultdict
import json
import multiprocessing
import random
im... | 9,100 | 31.974638 | 135 | py |
MINDER | MINDER-main/scripts/training/make_unsupervised_dataset.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import csv
import random
import tqdm
from nltk.corpus import stopwords
banned = {
"the", "The",
"... | 5,756 | 31.525424 | 88 | py |
MINDER | MINDER-main/scripts/training/make_generated_dataset2.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import csv
import random
import tqdm
import pickle
from nltk.corpus import stopwords
from random import sam... | 7,171 | 30.594714 | 140 | py |
MINDER | MINDER-main/scripts/training/make_generated_dataset_for_mamarco.py | # Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
#
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import csv
import random
import tqdm
import pickle
from nltk.corpus import stopwords
from random import sam... | 7,234 | 30.872247 | 136 | py |
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