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jabref-main/src/test/java/org/jabref/model/entry/field/StandardFieldTest.java
package org.jabref.model.entry.field; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; class StandardFieldTest { @Test void fieldsConsideredEqualIfSame() { assertEquals(StandardField.TITLE, StandardField.TITLE); } }
287
19.571429
63
java
null
jabref-main/src/test/java/org/jabref/model/entry/field/UnknownFieldTest.java
package org.jabref.model.entry.field; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; class UnknownFieldTest { @Test void fieldsConsideredEqualIfSameName() { assertEquals(new UnknownField("title"), new UnknownField("title")); } @Test void f...
642
25.791667
75
java
null
jabref-main/src/test/java/org/jabref/model/entry/identifier/ArXivIdentifierTest.java
package org.jabref.model.entry.identifier; import java.net.URI; import java.util.Optional; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; class ArXivIdentifierTest { @Test void parse() throws Exception { Optional<ArXivIdentifier> parsed = ArXivIdenti...
6,191
34.586207
111
java
null
jabref-main/src/test/java/org/jabref/model/entry/identifier/DOITest.java
package org.jabref.model.entry.identifier; import java.util.Optional; import java.util.stream.Stream; import org.junit.jupiter.api.Test; import org.junit.jupiter.params.ParameterizedTest; import org.junit.jupiter.params.provider.Arguments; import org.junit.jupiter.params.provider.MethodSource; import static org.juni...
16,836
58.077193
164
java
null
jabref-main/src/test/java/org/jabref/model/entry/identifier/ISBNTest.java
package org.jabref.model.entry.identifier; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertFalse; import static org.junit.jupiter.api.Assertions.assertTrue; public class ISBNTest { @Test public void testIsValidFormat10Correct() { assertTrue(new ISBN("0-123456-...
2,013
26.216216
69
java
null
jabref-main/src/test/java/org/jabref/model/entry/identifier/ISSNTest.java
package org.jabref.model.entry.identifier; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertFalse; import static org.junit.jupiter.api.Assertions.assertTrue; public class ISSNTest { @Test public void testIsCa...
1,712
26.190476
78
java
null
jabref-main/src/test/java/org/jabref/model/entry/identifier/IacrEprintTest.java
package org.jabref.model.entry.identifier; import java.util.stream.Stream; import org.junit.jupiter.api.Test; import org.junit.jupiter.params.ParameterizedTest; import org.junit.jupiter.params.provider.Arguments; import org.junit.jupiter.params.provider.MethodSource; import static org.junit.jupiter.api.Assertions.as...
2,024
32.75
89
java
null
jabref-main/src/test/java/org/jabref/model/entry/identifier/MathSciNetIdTest.java
package org.jabref.model.entry.identifier; import java.util.Optional; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; public class MathSciNetIdTest { @Test public void parseRemovesNewLineCharacterAtEnd() throws Exception { Optional<MathSciNetId> id = ...
429
24.294118
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java
null
jabref-main/src/test/java/org/jabref/model/event/EventListenerTest.java
package org.jabref.model.event; import java.util.List; import org.jabref.model.database.event.EntriesAddedEvent; import org.jabref.model.database.event.EntriesRemovedEvent; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.event.EntryChangedEvent; import com.google.common.eventbus.Subscribe; pub...
1,273
23.980392
59
java
null
jabref-main/src/test/java/org/jabref/model/groups/AutomaticKeywordGroupTest.java
package org.jabref.model.groups; import java.util.HashSet; import java.util.Set; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; class AutomaticKeywordGroupTest { @Test ...
1,746
39.627907
165
java
null
jabref-main/src/test/java/org/jabref/model/groups/AutomaticPersonsGroupTest.java
package org.jabref.model.groups; import java.util.Arrays; import java.util.stream.Collectors; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.junit.jupiter.api.Test; import static org.hamcrest.MatcherAssert.assertThat; import static org.hamcrest.Matchers.contain...
2,601
44.649123
134
java
null
jabref-main/src/test/java/org/jabref/model/groups/ExplicitGroupTest.java
package org.jabref.model.groups; import java.util.Optional; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupi...
3,388
33.938144
109
java
null
jabref-main/src/test/java/org/jabref/model/groups/GroupTreeNodeTest.java
package org.jabref.model.groups; import java.util.ArrayList; import java.util.Arrays; import java.util.Collections; import java.util.EnumSet; import java.util.List; import java.util.Optional; import org.jabref.model.FieldChange; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField...
14,341
39.860399
185
java
null
jabref-main/src/test/java/org/jabref/model/groups/SearchGroupTest.java
package org.jabref.model.groups; import java.util.EnumSet; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.jabref.model.search.rules.SearchRules; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertFalse; import static org.jun...
2,188
39.537037
209
java
null
jabref-main/src/test/java/org/jabref/model/groups/TexGroupTest.java
package org.jabref.model.groups; import java.nio.file.Path; import org.jabref.architecture.AllowedToUseLogic; import org.jabref.logic.auxparser.DefaultAuxParser; import org.jabref.model.database.BibDatabase; import org.jabref.model.entry.BibEntry; import org.jabref.model.metadata.MetaData; import org.jabref.model.uti...
2,309
38.152542
175
java
null
jabref-main/src/test/java/org/jabref/model/groups/WordKeywordGroupTest.java
package org.jabref.model.groups; import java.util.Optional; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupi...
4,073
31.592
144
java
null
jabref-main/src/test/java/org/jabref/model/metadata/MetaDataTest.java
package org.jabref.model.metadata; import java.util.Optional; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; public class MetaDataTest { private MetaData metaData; @BeforeEach public void setUp() { metaDa...
468
18.541667
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java
null
jabref-main/src/test/java/org/jabref/model/openoffice/CitationEntryTest.java
package org.jabref.model.openoffice; import java.util.Optional; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertNotEquals; import static org.junit.jupiter.api.Assertions.assertTrue; class CitationEntryTest { @T...
2,618
39.921875
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java
null
jabref-main/src/test/java/org/jabref/model/paging/PageTest.java
package org.jabref.model.paging; import java.util.ArrayList; import java.util.Arrays; import java.util.Collection; import java.util.Collections; import java.util.List; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; import stati...
1,801
29.033333
73
java
null
jabref-main/src/test/java/org/jabref/model/pdf/FileAnnotationTest.java
package org.jabref.model.pdf; import java.time.LocalDateTime; import java.time.temporal.ChronoUnit; import java.util.Optional; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertTrue; public class FileAnnotationTest { ...
1,855
34.692308
100
java
null
jabref-main/src/test/java/org/jabref/model/search/matchers/MatcherSetsTest.java
package org.jabref.model.search.matchers; import org.jabref.model.entry.BibEntry; import org.jabref.model.search.rules.MockSearchMatcher; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertFalse; import static org.junit.jupiter.api.Assertions.assertTrue; public class MatcherSets...
1,532
30.285714
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java
null
jabref-main/src/test/java/org/jabref/model/search/rules/ContainsBasedSearchRuleTest.java
package org.jabref.model.search.rules; import java.util.EnumSet; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.jabref.model.entry.types.StandardEntryType; import org.junit.jupiter.api.Test; import static org.junit.jupiter.api.Assertions.assertFalse; import sta...
2,558
42.372881
184
java
null
jabref-main/src/test/java/org/jabref/model/search/rules/GrammarBasedSearchRuleTest.java
package org.jabref.model.search.rules; import java.util.EnumSet; import org.jabref.model.entry.BibEntry; import org.jabref.model.entry.field.StandardField; import org.jabref.model.entry.types.StandardEntryType; import org.junit.jupiter.api.Disabled; import org.junit.jupiter.api.Test; import static org.junit.jupiter...
4,203
40.215686
167
java
null
jabref-main/src/test/java/org/jabref/model/search/rules/MockSearchMatcher.java
package org.jabref.model.search.rules; import org.jabref.model.entry.BibEntry; import org.jabref.model.search.SearchMatcher; /** * Mock search rule that returns the values passed. Useful for testing. */ public class MockSearchMatcher implements SearchMatcher { private final boolean result; public MockSear...
475
20.636364
71
java
null
jabref-main/src/test/java/org/jabref/model/search/rules/SentenceAnalyzerTest.java
package org.jabref.model.search.rules; import java.util.List; import java.util.stream.Stream; import org.junit.jupiter.params.ParameterizedTest; import org.junit.jupiter.params.provider.Arguments; import org.junit.jupiter.params.provider.MethodSource; import static org.junit.jupiter.api.Assertions.assertEquals; pub...
1,040
28.742857
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java
null
jabref-main/src/test/java/org/jabref/model/strings/StringUtilTest.java
package org.jabref.model.strings; import java.nio.charset.StandardCharsets; import java.nio.file.Files; import java.nio.file.Path; import java.util.Optional; import java.util.stream.Stream; import org.junit.jupiter.api.Test; import org.junit.jupiter.params.ParameterizedTest; import org.junit.jupiter.params.provider.A...
15,516
36.662621
121
java
null
jabref-main/src/test/java/org/jabref/model/texparser/CitationTest.java
package org.jabref.model.texparser; import java.nio.file.Path; import java.util.stream.Stream; import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.Test; import org.junit.jupiter.params.ParameterizedTest; import org.junit.jupiter.params.provider.Arguments; import org.junit.jupiter.params.provider.Met...
3,181
28.738318
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java
null
jabref-main/src/test/java/org/jabref/performance/BibtexEntryGenerator.java
package org.jabref.performance; public class BibtexEntryGenerator { public String generateBibtexEntries(int number) { StringBuilder sb = new StringBuilder(); for (int i = 0; i < number; i++) { sb.append(generateBibtexEntry(i)); sb.append("\n"); } return sb.t...
883
31.740741
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java
null
jabref-main/src/test/java/org/jabref/support/CIServerCondition.java
package org.jabref.support; import java.lang.reflect.AnnotatedElement; import java.util.Optional; import org.jabref.model.strings.StringUtil; import org.junit.jupiter.api.extension.ConditionEvaluationResult; import org.junit.jupiter.api.extension.ExecutionCondition; import org.junit.jupiter.api.extension.ExtensionCo...
1,727
37.4
119
java
null
jabref-main/src/test/java/org/jabref/support/DisabledOnCIServer.java
package org.jabref.support; import java.lang.annotation.ElementType; import java.lang.annotation.Retention; import java.lang.annotation.RetentionPolicy; import java.lang.annotation.Target; import org.junit.jupiter.api.extension.ExtendWith; @Target(value = {ElementType.TYPE, ElementType.METHOD}) @Retention(RetentionP...
433
26.125
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java
null
jabref-main/src/test/java/org/jabref/testutils/category/DatabaseTest.java
package org.jabref.testutils.category; import java.lang.annotation.ElementType; import java.lang.annotation.Inherited; import java.lang.annotation.Retention; import java.lang.annotation.RetentionPolicy; import java.lang.annotation.Target; import org.junit.jupiter.api.Tag; @Target({ElementType.TYPE, ElementType.METHO...
427
24.176471
47
java
null
jabref-main/src/test/java/org/jabref/testutils/category/FetcherTest.java
package org.jabref.testutils.category; import java.lang.annotation.ElementType; import java.lang.annotation.Inherited; import java.lang.annotation.Retention; import java.lang.annotation.RetentionPolicy; import java.lang.annotation.Target; import org.junit.jupiter.api.Tag; @Target({ElementType.TYPE, ElementType.METHO...
456
24.388889
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java
null
jabref-main/src/test/java/org/jabref/testutils/category/GUITest.java
package org.jabref.testutils.category; import java.lang.annotation.ElementType; import java.lang.annotation.Inherited; import java.lang.annotation.Retention; import java.lang.annotation.RetentionPolicy; import java.lang.annotation.Target; import org.junit.jupiter.api.Tag; @Target({ElementType.TYPE, ElementType.METHO...
430
22.944444
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java
null
jabref-main/src/test/java/org/jabref/testutils/interactive/styletester/StyleTesterMain.java
package org.jabref.testutils.interactive.styletester; import javafx.application.Application; import javafx.scene.Scene; import javafx.stage.Stage; import org.jabref.gui.JabRefExecutorService; import org.jabref.gui.theme.ThemeManager; import org.jabref.gui.util.DefaultFileUpdateMonitor; import org.jabref.logic.JabRefE...
1,376
31.023256
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java
null
jabref-main/src/test/java/org/jabref/testutils/interactive/styletester/StyleTesterView.java
package org.jabref.testutils.interactive.styletester; import javafx.css.PseudoClass; import javafx.fxml.FXML; import javafx.scene.Parent; import javafx.scene.control.Button; import com.airhacks.afterburner.views.ViewLoader; public class StyleTesterView { @FXML private Button normalButtonHover; @FXML private ...
1,778
33.882353
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java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/cc/factorie/protobuf/DocumentProtos.java
// Generated by the protocol buffer compiler. DO NOT EDIT! // source: Document.proto package cc.factorie.protobuf; public final class DocumentProtos { private DocumentProtos() {} public static void registerAllExtensions( com.google.protobuf.ExtensionRegistry registry) { } public static final class Docu...
177,913
37.710618
176
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/AveragedPerceptron.java
package edu.uw.cs.multir.learning.algorithm; import java.util.Random; import edu.uw.cs.multir.learning.data.Dataset; import edu.uw.cs.multir.learning.data.MILDocument; import edu.uw.cs.multir.util.DenseVector; import edu.uw.cs.multir.util.SparseBinaryVector; public class AveragedPerceptron { public int maxIteratio...
4,782
28.89375
95
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/ConditionalInference.java
package edu.uw.cs.multir.learning.algorithm; import java.util.Arrays; import java.util.Comparator; import edu.uw.cs.multir.learning.data.MILDocument; public class ConditionalInference { public static Parse infer(MILDocument doc, Scorer parseScorer, Parameters params) { int numMentions = doc.numMentions; ...
3,843
25.881119
65
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/FullInference.java
package edu.uw.cs.multir.learning.algorithm; import edu.uw.cs.multir.learning.data.MILDocument; public class FullInference { public static Parse infer(MILDocument doc, Scorer parseScorer, Parameters params) { Parse parse = new Parse(); parse.doc = doc; parse.Z = new int[doc.numMentions]; parseScorer....
1,523
24.4
77
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/Model.java
package edu.uw.cs.multir.learning.algorithm; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStreamReader; import java.io.OutputStreamWriter; public class Model { public int numRelations; ...
1,162
26.690476
62
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/Parameters.java
package edu.uw.cs.multir.learning.algorithm; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStream; import java.io.OutputStream; import edu.uw.cs.multir.util.DenseVector; public ...
2,037
23.853659
73
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/Parse.java
package edu.uw.cs.multir.learning.algorithm; import edu.uw.cs.multir.learning.data.MILDocument; public class Parse { public int[] Y; public int[] Z; public double score; public MILDocument doc; public double[] scores; // for each relation public double[][] allScores; public Parse() {} }
300
17.8125
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java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/Scorer.java
package edu.uw.cs.multir.learning.algorithm; import edu.uw.cs.multir.learning.data.MILDocument; import edu.uw.cs.multir.util.DenseVector; import edu.uw.cs.multir.util.SparseBinaryVector; public class Scorer { private Parameters params; public Scorer() {} // scoring on mention documents, all 2*numRelation pub...
777
25.827586
88
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/algorithm/Viterbi.java
package edu.uw.cs.multir.learning.algorithm; import edu.uw.cs.multir.learning.data.MILDocument; public class Viterbi { private Scorer parseScorer; private Model model; public Viterbi(Model model, Scorer parseScorer) { this.model = model; this.parseScorer = parseScorer; } public Parse parse(MILDocument d...
1,042
19.86
65
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/data/Dataset.java
package edu.uw.cs.multir.learning.data; import java.util.Random; public interface Dataset { public int numDocs(); public void shuffle(Random random); public MILDocument next(); public boolean next(MILDocument doc); public void reset(); }
255
14.058824
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java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/data/MILDocument.java
package edu.uw.cs.multir.learning.data; import java.io.DataInputStream; import java.io.DataOutputStream; import java.io.EOFException; import java.io.IOException; import edu.uw.cs.multir.util.SparseBinaryVector; /* * The purpose of this data structure is to keep all relevant information for * learning while using ...
2,571
25.791667
77
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/learning/data/MemoryDataset.java
package edu.uw.cs.multir.learning.data; import java.io.BufferedInputStream; import java.io.DataInputStream; import java.io.FileInputStream; import java.io.IOException; import java.util.ArrayList; import java.util.List; import java.util.Random; public class MemoryDataset implements Dataset { private MILDocument[] d...
1,531
21.202899
67
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/AggregatePrecisionRecallCurve.java
package edu.uw.cs.multir.main; import java.io.File; import java.io.IOException; import java.io.PrintStream; import java.util.ArrayList; import java.util.Collections; import java.util.Comparator; import java.util.List; import edu.uw.cs.multir.learning.algorithm.FullInference; import edu.uw.cs.multir.learning.algorithm...
4,286
26.480769
81
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/Main.java
package edu.uw.cs.multir.main; import java.io.IOException; public class Main { public static void main(String[] args) throws IOException { if (args.length == 0) printUsage(); String c = args[0]; if (c.equals("preprocess")) { String trainFile = null; String testFile = null; String outDir =...
4,111
27.755245
85
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/Preprocess.java
package edu.uw.cs.multir.main; import java.io.File; import java.io.IOException; import edu.uw.cs.multir.learning.algorithm.Model; import edu.uw.cs.multir.preprocess.ConvertProtobufToMILDocument; import edu.uw.cs.multir.preprocess.Mappings; public class Preprocess { public static void preprocess(String trainFile, S...
1,151
27.8
86
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/ResultWriter.java
package edu.uw.cs.multir.main; import java.io.File; import java.io.IOException; import java.io.PrintStream; import java.util.HashMap; import java.util.Map; import edu.uw.cs.multir.learning.algorithm.FullInference; import edu.uw.cs.multir.learning.algorithm.Model; import edu.uw.cs.multir.learning.algorithm.Parameters;...
2,795
31.137931
85
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/SententialPrecisionRecallByRelation.java
package edu.uw.cs.multir.main; import java.io.BufferedReader; import java.io.FileInputStream; import java.io.IOException; import java.io.InputStreamReader; import java.util.ArrayList; import java.util.Collections; import java.util.Comparator; import java.util.HashMap; import java.util.List; import java.util.Map; publ...
4,054
31.18254
124
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/SententialPrecisionRecallCurve.java
package edu.uw.cs.multir.main; import java.io.BufferedReader; import java.io.FileInputStream; import java.io.IOException; import java.io.InputStreamReader; import java.util.ArrayList; import java.util.Collections; import java.util.Comparator; import java.util.HashMap; import java.util.List; import java.util.Map; publ...
4,097
25.269231
85
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/Test.java
package edu.uw.cs.multir.main; import java.io.File; import java.io.IOException; import edu.uw.cs.multir.learning.algorithm.FullInference; import edu.uw.cs.multir.learning.algorithm.Model; import edu.uw.cs.multir.learning.algorithm.Parameters; import edu.uw.cs.multir.learning.algorithm.Scorer; import edu.uw.cs.multir....
1,149
29.263158
80
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/main/Train.java
package edu.uw.cs.multir.main; import java.io.File; import java.io.IOException; import java.util.Random; import edu.uw.cs.multir.learning.algorithm.AveragedPerceptron; import edu.uw.cs.multir.learning.algorithm.Model; import edu.uw.cs.multir.learning.algorithm.Parameters; import edu.uw.cs.multir.learning.data.Dataset...
1,026
27.527778
73
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/preprocess/ConvertProtobufToMILDocument.java
package edu.uw.cs.multir.preprocess; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.DataOutputStream; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStream; import java.util.Arrays; import java.util.zip.GZIPInput...
3,793
30.355372
82
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/preprocess/Mappings.java
package edu.uw.cs.multir.preprocess; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.IOException; import java.io.InputStreamReader; import java.io.OutputStreamWriter; import java.util.ArrayList; import java.util.Collections; ...
2,437
25.791209
83
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/util/DenseVector.java
package edu.uw.cs.multir.util; import java.io.DataInputStream; import java.io.DataOutputStream; import java.io.IOException; import java.io.InputStream; import java.io.OutputStream; public class DenseVector { public double[] vals; public DenseVector(int length) { this.vals = new double[length]; } public dou...
1,982
22.329412
79
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/multir/src/edu/uw/cs/multir/util/SparseBinaryVector.java
package edu.uw.cs.multir.util; import java.io.DataInputStream; import java.io.DataOutputStream; import java.io.IOException; import java.io.InputStream; import java.io.OutputStream; public class SparseBinaryVector { public int[] ids; // sorted public int num; // the array might not be full public SparseBi...
1,592
19.688312
67
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/svm_predict.java
import libsvm.*; import java.io.*; import java.util.*; class svm_predict { private static svm_print_interface svm_print_null = new svm_print_interface() { public void print(String s) {} }; private static svm_print_interface svm_print_stdout = new svm_print_interface() { public void print(String s) { Sys...
4,950
24.389744
183
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/svm_scale.java
import libsvm.*; import java.io.*; import java.util.*; import java.text.DecimalFormat; class svm_scale { private String line = null; private double lower = -1.0; private double upper = 1.0; private double y_lower; private double y_upper; private boolean y_scaling = false; private double[] feature_max; private ...
8,944
24.48433
85
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/svm_toy.java
import libsvm.*; import java.applet.*; import java.awt.*; import java.util.*; import java.awt.event.*; import java.io.*; public class svm_toy extends Applet { static final String DEFAULT_PARAM="-t 2 -c 100"; int XLEN; int YLEN; // off-screen buffer Image buffer; Graphics buffer_gc; // pre-allocated colors ...
12,269
23.393638
104
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/svm_train.java
import libsvm.*; import java.io.*; import java.util.*; class svm_train { private svm_parameter param; // set by parse_command_line private svm_problem prob; // set by read_problem private svm_model model; private String input_file_name; // set by parse_command_line private String model_file_name; // set by pa...
8,355
25.194357
115
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/libsvm/svm.java
package libsvm; import java.io.*; import java.util.*; // // Kernel Cache // // l is the number of total data items // size is the cache size limit in bytes // class Cache { private final int l; private long size; private final class head_t { head_t prev, next; // a cicular list float[] data; int len; /...
63,839
21.4
145
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/libsvm/svm_model.java
// // svm_model // package libsvm; public class svm_model implements java.io.Serializable { public svm_parameter param; // parameter public int nr_class; // number of classes, = 2 in regression/one class svm public int l; // total #SV public svm_node[][] SV; // SVs (SV[l]) public double[][] sv_coef; // coeffici...
868
36.782609
133
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/libsvm/svm_node.java
package libsvm; public class svm_node implements java.io.Serializable { public int index; public double value; }
115
15.571429
53
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/libsvm/svm_parameter.java
package libsvm; public class svm_parameter implements Cloneable,java.io.Serializable { /* svm_type */ public static final int C_SVC = 0; public static final int NU_SVC = 1; public static final int ONE_CLASS = 2; public static final int EPSILON_SVR = 3; public static final int NU_SVR = 4; /* kernel_type */ publ...
1,288
25.854167
68
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/libsvm/svm_print_interface.java
package libsvm; public interface svm_print_interface { public void print(String s); }
87
13.666667
36
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/libsvm/java/libsvm/svm_problem.java
package libsvm; public class svm_problem implements java.io.Serializable { public int l; public double[] y; public svm_node[][] x; }
136
16.125
56
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/libsvm/CustomKernel.java
package libsvm; public abstract class CustomKernel { abstract public double kernel(svm_node[] x, svm_node[] y); abstract public svm_node new_svm_node(); }
160
19.125
60
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/libsvm/svm.java
package libsvm; import java.io.*; import java.util.*; // // Kernel Cache // // l is the number of total data items // size is the cache size limit in bytes // class Cache { private final int l; private int size; private final class head_t { head_t prev, next; // a cicular list float[] data; int len; // data...
58,749
21.262221
150
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/libsvm/svm_model.java
// // svm_model // package libsvm; public class svm_model implements java.io.Serializable { svm_parameter param; // parameter int nr_class; // number of classes, = 2 in regression/one class svm int l; // total #SV public svm_node[][] SV; // SVs (SV[l]) // Razvan double[][] sv_coef; // coefficients for SVs in de...
681
30
84
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/libsvm/svm_node.java
package libsvm; import java.io.*; public class svm_node implements java.io.Serializable { public int index; public double value; public void read(String line, double[][] coef, int m, int index) { } public void write(DataOutputStream fp) throws IOException { fp.writeBytes(index + ":" + value + " ");...
330
16.421053
66
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/libsvm/svm_parameter.java
package libsvm; public class svm_parameter implements Cloneable,java.io.Serializable { /* svm_type */ public static final int C_SVC = 0; public static final int NU_SVC = 1; public static final int ONE_CLASS = 2; public static final int EPSILON_SVR = 3; public static final int NU_SVR = 4; /* kernel_type */ publ...
1,293
25.958333
68
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/libsvm/svm_problem.java
package libsvm; public class svm_problem implements java.io.Serializable { public int l; public double[] y; public svm_node[][] x; }
136
16.125
56
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/ssk/FeatureDictionary.java
package ssk; import java.util.*; /** * Class FeatureDictionary. A dictionary (i.e set of unique features) is * created for each feature type. * * Current feature types: * - words; * - POS tags; * * Other possible feature types: * - phrase tags; * - entity types; * - WordNet synsets; * * @author Razvan B...
1,001
19.04
73
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/ssk/InstanceExample.java
package ssk; import java.io.*; import java.util.*; /** * Class InstanceExample represents a training/testing example as an array * of feature sets (here, a feature set contains a word and its POS tag). * * @author Razvan Bunescu */ public class InstanceExample implements java.io.Serializable { int label_; ...
1,806
21.308642
74
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/ssk/SubsequenceKernel.java
package ssk; import libsvm.*; import java.util.*; import java.util.Vector; import java.io.File; import java.io.InputStreamReader; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileInputStream; import java.io.FileWriter; import java.io.BufferedReader; import java.io.IOExceptio...
9,305
25.818444
89
java
USC-DS-RelationExtraction
USC-DS-RelationExtraction-master/code/Model/seq-kernel/ssk_core/ssk/intex_node.java
package ssk; import libsvm.*; import java.io.*; import java.util.*; /** * Class intex_node extends svm_node to allow for a custom representation of * training/testing instances. * * @author Razvan Bunescu */ public class intex_node extends svm_node { static public FeatureDictionary m_fd; static { m_fd...
957
19.382979
76
java
null
RevTerm-main/code/C_to_prog/src/C_to_prog.java
import java.io.File; import java.io.FileWriter; import java.util.Scanner; import java.util.Vector; public class C_to_prog { public static void main(String[] args) throws Exception { String input=args[0]; String output=args[1]; Convert(input,output); } public static void Convert(...
5,115
37.179104
179
java
null
RevTerm-main/code/linear/part1/Main/src/CFGNode.java
import java.util.Map; import java.util.TreeMap; import java.util.Vector; public class CFGNode { public static Vector<CFGNode> allCFGNodes = new Vector<>(); public static Map<Integer, CFGNode> idToNode = new TreeMap<>(); public static int greatestNodeIndex = 0; public Vector<Transition> out; int id...
4,695
30.099338
104
java
null
RevTerm-main/code/linear/part1/Main/src/CFGUtil.java
import java.util.Vector; public class CFGUtil { public static Vector<CFGNode> findCutpoints() { Vector<CFGNode> ret=new Vector<>(); ret.add(Main.startNode); Main.startNode.isCutPoint=true; ret.add(Main.termNode); Main.termNode.isCutPoint=true; dfs(Main.startNode,...
1,568
30.38
198
java
null
RevTerm-main/code/linear/part1/Main/src/Farkas.java
import java.util.HashSet; import java.util.Set; import java.util.Vector; public class Farkas { public static int countD = 0; int startDIndex; int startNode, endNode; private QuadraticPredicate invConstraint; private LinearPredicate linearConstraints; private QuadraticCombination objective; ...
5,091
28.604651
99
java
null
RevTerm-main/code/linear/part1/Main/src/InvUtil.java
import java.io.BufferedReader; import java.io.FileWriter; import java.io.InputStreamReader; import java.util.Vector; public class InvUtil { public static boolean checkNonTermination(Vector<Farkas> I, CFGNode startNode) throws Exception { String Template = "";//InvariantGeneration.cCount+" "+Farkas.cou...
3,634
34.637255
183
java
null
RevTerm-main/code/linear/part1/Main/src/InvariantGeneration.java
import java.util.*; public class InvariantGeneration { public static Map<String, String> nondetVarsC = new HashMap<>(); public static String negativeVar; public static int totalUnknownVars = 0; public static int cCount = 0; public static void MakeTemplate(int con,int dis)//conjunctions, disjuncti...
4,409
34.28
139
java
null
RevTerm-main/code/linear/part1/Main/src/LinearCombination.java
import java.text.DecimalFormat; import java.util.HashMap; import java.util.Map; import java.util.Vector; public class LinearCombination { Map<String, Rational> coef; public static LinearCombination one = new LinearCombination(Rational.one); LinearCombination() { coef = new HashMap<>(); } ...
5,915
25.769231
94
java
null
RevTerm-main/code/linear/part1/Main/src/LinearPredicate.java
import java.util.Vector; public class LinearPredicate { Vector<LinearCombination> exprs; LinearPredicate() { exprs = new Vector<>(); } void add(LinearCombination lc) { for(LinearCombination l:exprs) if(l!=null && l.equals(lc)) return; exprs...
3,935
24.230769
111
java
null
RevTerm-main/code/linear/part1/Main/src/Main.java
import java.util.Vector; public class Main { public static Rational eps = Rational.one; public static CFGNode startNode, cutPoint, termNode; public static String fileName = "", solver = "",workingdir="",solversDir=""; public static int con = 0, dis = 0; public static void main(String[] args) thro...
2,626
29.905882
95
java
null
RevTerm-main/code/linear/part1/Main/src/Node.java
import java.util.Vector; public class Node { public static Vector<Node> allNodes = new Vector<>(); int id; Node par; int beginIndex, endIndex; String type; Vector<Node> children; String varName; LinearCombination expr; QuadraticCombination nondetLow, nondetUp; Vector<LinearPred...
1,224
23.5
81
java
null
RevTerm-main/code/linear/part1/Main/src/Parser.java
import java.io.File; import java.util.HashSet; import java.util.Scanner; import java.util.Set; import java.util.Vector; public class Parser { public static Set<String> allVars = new HashSet<>(); public static Vector<String> tokens = new Vector<>(); public static int nondetCount = 0; static { ...
20,313
34.576182
163
java
null
RevTerm-main/code/linear/part1/Main/src/QuadraticCombination.java
import java.util.HashMap; import java.util.Map; import java.util.Set; import java.util.Vector; public class QuadraticCombination { Map<String, LinearCombination> coef; QuadraticCombination() { coef = new HashMap<>(); } QuadraticCombination(String var, LinearCombination lc) { ...
3,438
23.390071
81
java
null
RevTerm-main/code/linear/part1/Main/src/QuadraticPredicate.java
import java.util.Vector; public class QuadraticPredicate { public static QuadraticPredicate TRUE=new QuadraticPredicate(new QuadraticCombination("1",new LinearCombination("1",Rational.one))); Vector<QuadraticCombination> exprs; QuadraticPredicate() //conjunctions { exprs = new Vector<>(); ...
2,825
25.166667
136
java
null
RevTerm-main/code/linear/part1/Main/src/Rational.java
import java.util.EnumMap; public class Rational implements Comparable<Rational> { public static final Rational one = new Rational(1, 1), zero = new Rational(0, 1); int numerator, denominator; public int gcd(int a, int b) { if (b == 0) return a; return gcd(b, a % b); } Rationa...
2,675
22.892857
118
java
null
RevTerm-main/code/linear/part1/Main/src/Transition.java
import java.util.Vector; public class Transition //from "v.first" to "v.second" with guard "g" and update "varName := update" { public static Vector<Transition> allTransitions = new Vector<>(); CFGNode v, u; LinearPredicate detGuard; QuadraticPredicate nondetGuard; Vector<String> varName; V...
2,381
27.357143
103
java
null
RevTerm-main/code/linear/part2/Main/src/CFGNode.java
import java.util.Map; import java.util.TreeMap; import java.util.Vector; public class CFGNode { public static Vector<CFGNode> allCFGNodes=new Vector<>(); public static Map<Integer,CFGNode> idToNode=new TreeMap<>(); public static int greaTestNodeIndex=0; public Vector<Transition> out; public Vector...
5,150
30.601227
104
java
null
RevTerm-main/code/linear/part2/Main/src/CFGUtil.java
import java.util.Vector; public class CFGUtil { public static Vector<CFGNode> findCutpoints() { Vector<CFGNode> ret=new Vector<>(); ret.add(Main.startNode); Main.startNode.isCutPoint=true; ret.add(Main.termNode); Main.termNode.isCutPoint=true; dfs(Main.startNod...
1,626
29.12963
210
java
null
RevTerm-main/code/linear/part2/Main/src/Farkas.java
import java.util.HashSet; import java.util.Set; import java.util.Vector; public class Farkas { public static int countD=0; int startDIndex; int startNode,endNode; QuadraticPredicate invConstraint; LinearPredicate linearConstraints; QuadraticCombination objective; Farkas(int startNode,int ...
4,761
26.686047
92
java
null
RevTerm-main/code/linear/part2/Main/src/InvUtil.java
import java.io.*; import java.nio.channels.FileLockInterruptionException; import java.util.Scanner; import java.util.Vector; //TODO: update checkNonTermination public class InvUtil { public static boolean checkNonTermination(Vector<Farkas> I,Vector<Farkas> Inductive,CFGNode startNode) throws Exception { ...
4,101
32.622951
123
java
null
RevTerm-main/code/linear/part2/Main/src/InvariantGeneration.java
import java.util.*; public class InvariantGeneration { public static Map<String,String> nondetVarsC=new HashMap<>(); public static int totalUnknownVars=0; public static int cCount=0; public static void MakeTemplate(int con,int dis,CFGNode startNode,int counter)//conjunctions, disjunctions { ...
4,741
36.634921
135
java
null
RevTerm-main/code/linear/part2/Main/src/LinearCombination.java
import java.text.DecimalFormat; import java.util.HashMap; import java.util.Map; import java.util.Vector; public class LinearCombination { Map<String,Rational> coef; public static LinearCombination one=new LinearCombination(Rational.one); LinearCombination() { coef=new HashMap<>(); } L...
6,870
25.125475
94
java