Christina Theodoris

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New activity in ctheodoris/Geneformer 21 days ago

Input data type for best results

1

#589 opened 21 days ago by

retract

New activity in ctheodoris/Geneformer about 2 months ago

Unable to fine-tune model with n_hyperopt_trials > 0. cc.validate gets stuck

1

#587 opened about 2 months ago by

Sheyiphunmi

New activity in ctheodoris/Geneformer 2 months ago

Should n_counts reflect pre- or post–gene-symbol-to-Ensembl conversion when unmapped genes are removed?

1

#586 opened 2 months ago by

suanzaoren

updated a model 3 months ago

ctheodoris/Geneformer

Fill-Mask • 0.3B • Updated May 26 • 4.26k • • 307

updated a model 4 months ago

theodoris-lab/MaxToki

Updated Apr 23 • 4 • 5

New activity in ctheodoris/Geneformer 4 months ago

Update geneformer/mtl/model.py

2

#585 opened 4 months ago by

MajorasMeow

published a model 5 months ago

theodoris-lab/MaxToki

Updated Apr 23 • 4 • 5

updated a dataset 5 months ago

theodoris-lab/Genecorpus-104M

Viewer • Updated Mar 27 • 104M • 6.14k • 2

New activity in ctheodoris/Genecorpus-30M 5 months ago

Technical Dropout vs. Biological Silencing

1

#28 opened 5 months ago by

rgholami

New activity in ctheodoris/Geneformer 5 months ago

Multi task classifier, True values incorrect

2

#584 opened 5 months ago by

saranyabalachandran

New activity in ctheodoris/Geneformer 6 months ago

Question regarding post-perturbation Cell × Embedding matrix extraction

1

#583 opened 6 months ago by

eastmancodes

published a dataset 6 months ago

theodoris-lab/Genecorpus-104M

Viewer • Updated Mar 27 • 104M • 6.14k • 2

New activity in ctheodoris/Geneformer 6 months ago

Setting max_layers_to_freeze overrun in MTLClassifier

5

#581 opened 7 months ago by

MajorasMeow

Update geneformer/mtl/train.py

1

#582 opened 7 months ago by

MajorasMeow

New activity in ctheodoris/Geneformer 7 months ago

A MTLClassifier.load_and_evaluate_test_model error

➕ 1

1

#580 opened 7 months ago by

c57bl6j

Issue reproducing TTN detection counts in In Silico Treatment Analysis

1

#579 opened 7 months ago by

LucasACyyy

Genecorpus 30 M annotation

1

#578 opened 7 months ago by

lorenzocampini

GPU requirements

1

#577 opened 7 months ago by

lorenzocampini

Considerations on Gene symbol and Ensembl ID mapping

1

#576 opened 7 months ago by

lorenzocampini

New activity in ctheodoris/Geneformer 8 months ago

Ensembl gene ID version used in Geneformer (ENSG)

1

#575 opened 8 months ago by

jenny143