README.md

---
license: mit
base_model: microsoft/deberta-v3-base
tags:
- generated_from_trainer
model-index:
- name: deberta-med-ner-2
  results: []

widget:
- text: "A 48 year-old female presented with vaginal bleeding and abnormal Pap smears.
Upon diagnosis of invasive non-keratinizing SCC of the cervix, she underwent a radical hysterectomy with salpingo-oophorectomy which demonstrated positive spread to the pelvic lymph nodes and the parametrium.
Pathological examination revealed that the tumour also extensively involved the lower uterine segment."
  example_title: "example 1"

---

<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->




# deberta-med-ner-2

This model is a fine-tuned version of [DeBERTaV3](https://huggingface.co/microsoft/deberta-v3-base) on the PubMED Dataset.

## Model description

MED-NER Model was finetuned on BERT to recognize 41 Medical entities.



### Training hyperparameters

The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 16
- eval_batch_size: 32
- seed: 69
- gradient_accumulation_steps: 2
- total_train_batch_size: 32
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
- lr_scheduler_type: cosine
- lr_scheduler_warmup_ratio: 0.1
- num_epochs: 25
- mixed_precision_training: Native AMP



## Usage
The easiest way is to load the inference api from huggingface and second method is through the pipeline object offered by transformers library.
```python
# Use a pipeline as a high-level helper
from transformers import pipeline
pipe = pipeline("token-classification", model="NeuronZero/MED-NER", aggregation_strategy='simple')

result = pipe('A 48 year-old female presented with vaginal bleeding and abnormal Pap smears.
Upon diagnosis of invasive non-keratinizing SCC of the cervix, she underwent a radical hysterectomy with salpingo-oophorectomy which demonstrated positive spread to the pelvic lymph nodes and the parametrium.
Pathological examination revealed that the tumour also extensively involved the lower uterine segment.')



# Load model directly
from transformers import AutoTokenizer, AutoModelForTokenClassification

tokenizer = AutoTokenizer.from_pretrained("NeuronZero/MED-NER")
model = AutoModelForTokenClassification.from_pretrained("NeuronZero/MED-NER")
```