docs/SOP_MASTER_INDEX.md

# SOP MASTER INDEX

**Ghost in the Machine Labs**  
**Version:** 3.0  
**Updated:** 2026-02-01

---

## Core Operations

| ID | Title | File | Status |
|----|-------|------|--------|
| CORE-001 | Efficiency Ceremony | SOP_EFFICIENCY_CEREMONY.md | Active |
| CORE-002 | TODO Management | SOP_CORE_002_TODO_Management.md | Active |
| CORE-003 | File Delivery Protocol | SOP_CORE_003_File_Delivery_Protocol.md | Active |
| CORE-004 | Sensor Panel Integration | SOP_CORE_004_Sensor_Panel_Integration.md | Active |
| CORE-005 | Translation Workflow | SOP_CORE_005_Translation_Workflow.md | Active |
| CORE-006 | File Naming Convention | SOP_CORE_006_File_Naming.md | Active |
| CORE-007 | Model Selection & CE Pipeline | SOP_CORE_007_Model_Selection.md | Active (v2.0) |

## Correctly Encoded Extractions™

| ID | Title | File | Status |
|----|-------|------|--------|
| CE-001 | CE Publication, Attribution & QA | SOP-CE-001_Correctly_Encoded_Extractions.docx | Active (v1.0) |

## Deployment

| ID | Title | File | Status |
|----|-------|------|--------|
| DEPLOY-001 | SPARKY Deployment | SOP_DEPLOY_001_Deployment.md | Active |

## Autonomous Operations

| ID | Title | File | Status |
|----|-------|------|--------|
| AUTO-001 | Autonomous Loop | SOP_AUTONOMOUS_LOOP.md | Active |
| AUTO-002 | Keepalive Services | SOP_KEEPALIVE_SERVICES.md | Active |

## Communications

| ID | Title | File | Status |
|----|-------|------|--------|
| COMM-001 | Response Templates | SOP_COMM_001_Response_Templates.md | Active |
| COMM-002 | Advertising Templates | SOP_COMM_002_Advertising_Templates.md | Active |

## Maintenance

| ID | Title | File | Status |
|----|-------|------|--------|
| MAINT-001 | Housekeeping | SOP_MAINT_001_Housekeeping_20260125.md | Active |

## Meta

| ID | Title | File | Status |
|----|-------|------|--------|
| META-001 | Creating SOPs | SOP_META_001_Creating_SOPs_and_Advertising.md | Active |

## Supplementary (sops/ directory)

| Title | File | Status |
|-------|------|--------|
| Claude Supervision | sops/SOP_CLAUDE_SUPERVISION.md | Active |
| Archive Advertising | sops/SOP_ARCHIVE_ADVERTISING.md | Active |
| Whitepaper Publishing | sops/SOP_WHITEPAPER_PUBLISHING.md | Active |
| Garden Tending | sops/SOP_GARDEN_TENDING.md | Active |
| Stats Update | sops/SOP_STATS_UPDATE.md | Active |

---

## Pipeline Cross-Reference

The model-to-publication pipeline spans two SOPs:

```
CORE-007: Model Selection & CE Pipeline
  Steps 1-4: Selection & validation criteria
  Step 5:    Substrate extraction (.npz)
  Step 6:    CE inference validation (3-prompt test)
  Step 7:    Publication decision gate
       │
       ▼
CE-001: Publication, Attribution & QA
  Section 6: Attribution requirements
  Section 7: Publication procedure
  Section 8: Metadata schema
```

---

## Quick Reference

### New Session
```bash
python sparky.py status
python diagnostics.py --quick
```

### Translation Workflow
```bash
python translation_workflow.py --full --paths ~/models
```

### CE Validation
```bash
python test_substrate_inference.py --substrate ~/sparky/substrates/{model}_ce1.npz
```

### Deployment
```bash
./deploy_dgx.sh
python validate_stack.py
python sparky.py chat
```

### File Versioning
```bash
python file_version.py <filename>
python file_version.py --check
```

### Release
```bash
python create_release.py --dry-run
python create_release.py
```

---

## Total SOPs: 15

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