| name: remap |
| task_type: cluster |
|
|
| max_protein_length: 1998 |
|
|
| cluster_dna_full: true |
| cluster_dna_peaks: true |
| cluster_protein: false |
|
|
| dna_full: |
| input_map_path: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/maps/dna_seqid_to_dna_sequence.json |
| fasta_path: dpacman/data_files/processed/mmseqs/inputs/fimo_hits_only/dna_full.fasta |
| output_dir: dpacman/data_files/processed/mmseqs/outputs/fimo_hits_only/dna_full |
| mmseqs: |
| min_seq_id: 0.3 |
| c: 0.8 |
| cov_mode: 0 |
| cluster_mode: 0 |
|
|
| dna_peaks: |
| input_map_path: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/maps/peak_seqid_to_peak_sequence.json |
| fasta_path: dpacman/data_files/processed/mmseqs/inputs/fimo_hits_only/dna_peaks.fasta |
| output_dir: dpacman/data_files/processed/mmseqs/outputs/fimo_hits_only/dna_peaks |
| mmseqs: |
| min_seq_id: 0.3 |
| c: 0.8 |
| cov_mode: 0 |
| cluster_mode: 0 |
|
|
| protein: |
| input_map_path: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/maps/tr_seqid_to_tr_sequence.json |
| fasta_path: dpacman/data_files/processed/mmseqs/inputs/fimo_hits_only/protein.fasta |
| output_dir: dpacman/data_files/processed/mmseqs/outputs/fimo_hits_only/protein |
| mmseqs: |
| min_seq_id: 0.3 |
| c: 0.8 |
| cov_mode: 0 |
| cluster_mode: 0 |
|
|
| input_data_path: /vast/projects/pranam/lab/sophie/DPACMAN/dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/remap2022_crm_fimo_output_q_processed_seed0.parquet |
| path_to_mmseqs: /vast/projects/pranam/lab/shared/mmseqs |
|
|
| out_dir: na |
| final_csv: na |
