File size: 1,490 Bytes
80b6a2c 29899b4 80b6a2c | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 | name: remap
task_type: cluster
max_protein_length: 1998
cluster_dna_full: true
cluster_dna_peaks: true
cluster_protein: false
dna_full:
input_map_path: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/maps/dna_seqid_to_dna_sequence.json
fasta_path: dpacman/data_files/processed/mmseqs/inputs/fimo_hits_only/dna_full.fasta
output_dir: dpacman/data_files/processed/mmseqs/outputs/fimo_hits_only/dna_full
mmseqs:
min_seq_id: 0.3
c: 0.8
cov_mode: 0
cluster_mode: 0
dna_peaks:
input_map_path: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/maps/peak_seqid_to_peak_sequence.json
fasta_path: dpacman/data_files/processed/mmseqs/inputs/fimo_hits_only/dna_peaks.fasta
output_dir: dpacman/data_files/processed/mmseqs/outputs/fimo_hits_only/dna_peaks
mmseqs:
min_seq_id: 0.3
c: 0.8
cov_mode: 0
cluster_mode: 0
protein:
input_map_path: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/maps/tr_seqid_to_tr_sequence.json
fasta_path: dpacman/data_files/processed/mmseqs/inputs/fimo_hits_only/protein.fasta
output_dir: dpacman/data_files/processed/mmseqs/outputs/fimo_hits_only/protein
mmseqs:
min_seq_id: 0.3
c: 0.8
cov_mode: 0
cluster_mode: 0
input_data_path: /vast/projects/pranam/lab/sophie/DPACMAN/dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/remap2022_crm_fimo_output_q_processed_seed0.parquet
path_to_mmseqs: /vast/projects/pranam/lab/shared/mmseqs
out_dir: na
final_csv: na |