feat: ship widget (extracted from blog-preview.html)
Browse files- README.md +12 -4
- index.html +1363 -18
- style.css +0 -28
README.md
CHANGED
|
@@ -1,10 +1,18 @@
|
|
| 1 |
---
|
| 2 |
-
title:
|
| 3 |
-
emoji:
|
| 4 |
colorFrom: green
|
| 5 |
-
colorTo:
|
| 6 |
sdk: static
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
+
title: Per-base, BPE, and 6-mer on the same DNA sequence
|
| 3 |
+
emoji: 🧬
|
| 4 |
colorFrom: green
|
| 5 |
+
colorTo: yellow
|
| 6 |
sdk: static
|
| 7 |
pinned: false
|
| 8 |
---
|
| 9 |
|
| 10 |
+
# Per-base, BPE, and 6-mer on the same DNA sequence
|
| 11 |
+
|
| 12 |
+
Standalone widget from the Carbon tokenization article. Embed via:
|
| 13 |
+
|
| 14 |
+
```html
|
| 15 |
+
<iframe src="https://huggingfacebio-carbon-tokenization-02-tokenizers-compared.hf.space" loading="lazy"></iframe>
|
| 16 |
+
```
|
| 17 |
+
|
| 18 |
+
Generated from [`blog-preview.html`](https://github.com/HuggingFaceBio/carbon-tokenization) by `widgets/_extract.py` — edit the source there, not here.
|
index.html
CHANGED
|
@@ -1,19 +1,1364 @@
|
|
| 1 |
-
<!
|
| 2 |
-
<html>
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
</html>
|
|
|
|
| 1 |
+
<!DOCTYPE html>
|
| 2 |
+
<html lang="en">
|
| 3 |
+
<head>
|
| 4 |
+
<meta charset="utf-8">
|
| 5 |
+
<meta name="viewport" content="width=device-width, initial-scale=1.0">
|
| 6 |
+
<title>Per-base, BPE, and 6-mer on the same DNA sequence</title>
|
| 7 |
+
<meta name="color-scheme" content="light">
|
| 8 |
+
<link rel="preconnect" href="https://fonts.googleapis.com">
|
| 9 |
+
<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
|
| 10 |
+
<link rel="stylesheet" href="https://fonts.googleapis.com/css2?family=JetBrains+Mono:wght@300;400;500;600;700&family=Inter:wght@300;400;500;600&display=swap">
|
| 11 |
+
<style>
|
| 12 |
+
:root {
|
| 13 |
+
--bg: #f7f5ee;
|
| 14 |
+
--ink: #1f1f1d;
|
| 15 |
+
--ink-soft: #5b5b56;
|
| 16 |
+
--ink-faint: #8a8a83;
|
| 17 |
+
--rule: #e3e1d6;
|
| 18 |
+
--hair: #eee;
|
| 19 |
+
--green: #317f3f;
|
| 20 |
+
--green-dark: #1f5024;
|
| 21 |
+
--green-tint: #f4f8f4;
|
| 22 |
+
--amber: #b8862c;
|
| 23 |
+
--amber-dark: #6b4d18;
|
| 24 |
+
--red: #b00020;
|
| 25 |
+
--blue: #2c5aa0;
|
| 26 |
+
--card: #fff;
|
| 27 |
+
--soft-cream: #fafaf6;
|
| 28 |
+
--base-a: #1A7A40;
|
| 29 |
+
--base-t: #b00020;
|
| 30 |
+
--base-c: #2c5aa0;
|
| 31 |
+
--base-g: #b8862c;
|
| 32 |
+
}
|
| 33 |
+
* { margin: 0; padding: 0; box-sizing: border-box; }
|
| 34 |
+
html { scroll-behavior: smooth; }
|
| 35 |
+
body {
|
| 36 |
+
font-family: "Inter", "Helvetica Neue", sans-serif;
|
| 37 |
+
font-size: 14px; font-weight: 300; line-height: 1.7;
|
| 38 |
+
color: var(--ink);
|
| 39 |
+
background: var(--bg);
|
| 40 |
+
}
|
| 41 |
+
::-webkit-scrollbar { width: 8px; height: 8px; }
|
| 42 |
+
::-webkit-scrollbar-thumb { background: #ccc; border-radius: 4px; }
|
| 43 |
+
::-webkit-scrollbar-track { background: transparent; }
|
| 44 |
+
|
| 45 |
+
/* --- Page header ----------------------------------------------------- */
|
| 46 |
+
.page-header {
|
| 47 |
+
border-bottom: 1px solid var(--rule);
|
| 48 |
+
background: var(--bg);
|
| 49 |
+
position: sticky; top: 0; z-index: 50;
|
| 50 |
+
backdrop-filter: saturate(180%) blur(6px);
|
| 51 |
+
}
|
| 52 |
+
.page-header__inner {
|
| 53 |
+
max-width: 1200px;
|
| 54 |
+
margin: 0 auto;
|
| 55 |
+
padding: 14px 32px;
|
| 56 |
+
display: flex; align-items: baseline; gap: 16px;
|
| 57 |
+
}
|
| 58 |
+
.wordmark {
|
| 59 |
+
font-family: "JetBrains Mono", monospace;
|
| 60 |
+
font-weight: 700;
|
| 61 |
+
font-size: 16px;
|
| 62 |
+
letter-spacing: 1px;
|
| 63 |
+
}
|
| 64 |
+
.wordmark .caret { color: var(--green); margin-right: 4px; }
|
| 65 |
+
.wordmark__sub {
|
| 66 |
+
font-family: "JetBrains Mono", monospace;
|
| 67 |
+
font-size: 11px; font-weight: 500;
|
| 68 |
+
text-transform: uppercase; letter-spacing: 2px;
|
| 69 |
+
color: var(--ink-soft);
|
| 70 |
+
margin-left: 4px;
|
| 71 |
+
}
|
| 72 |
+
.page-header__spacer { flex: 1; }
|
| 73 |
+
.page-header__crumbs {
|
| 74 |
+
font-family: "JetBrains Mono", monospace;
|
| 75 |
+
font-size: 10px; letter-spacing: 1.4px;
|
| 76 |
+
text-transform: uppercase; color: var(--ink-faint);
|
| 77 |
+
}
|
| 78 |
+
.page-header__crumbs a { color: var(--ink-soft); text-decoration: none; }
|
| 79 |
+
.page-header__crumbs a:hover { color: var(--green); }
|
| 80 |
+
|
| 81 |
+
/* --- Lede ----------------------------------------------------------- */
|
| 82 |
+
.tab-lede {
|
| 83 |
+
max-width: 1200px; margin: 56px auto 0;
|
| 84 |
+
padding: 0 32px;
|
| 85 |
+
}
|
| 86 |
+
.tab-lede__rail {
|
| 87 |
+
border-left: 3px solid var(--green);
|
| 88 |
+
padding: 4px 0 4px 22px;
|
| 89 |
+
max-width: 820px;
|
| 90 |
+
}
|
| 91 |
+
.tab-lede__eyebrow {
|
| 92 |
+
display: block;
|
| 93 |
+
font-family: "JetBrains Mono", monospace;
|
| 94 |
+
font-size: 11px; font-weight: 500;
|
| 95 |
+
letter-spacing: 0.22em; text-transform: uppercase;
|
| 96 |
+
color: var(--green); margin-bottom: 12px;
|
| 97 |
+
}
|
| 98 |
+
.tab-lede__title {
|
| 99 |
+
margin: 0 0 22px;
|
| 100 |
+
font-family: "JetBrains Mono", monospace;
|
| 101 |
+
font-size: 34px; font-weight: 500;
|
| 102 |
+
letter-spacing: -0.01em; line-height: 1.12;
|
| 103 |
+
color: var(--ink);
|
| 104 |
+
}
|
| 105 |
+
.tab-lede__lead {
|
| 106 |
+
margin: 0; max-width: 760px;
|
| 107 |
+
font-family: "Inter", sans-serif;
|
| 108 |
+
font-size: 19px; font-weight: 300; line-height: 1.5;
|
| 109 |
+
letter-spacing: -0.005em; color: #2d2d2a;
|
| 110 |
+
}
|
| 111 |
+
|
| 112 |
+
/* --- Post body ------------------------------------------------------ */
|
| 113 |
+
.post {
|
| 114 |
+
max-width: 760px;
|
| 115 |
+
margin: 32px auto 0;
|
| 116 |
+
padding: 0 32px 96px;
|
| 117 |
+
}
|
| 118 |
+
.post h2 {
|
| 119 |
+
margin: 64px 0 18px;
|
| 120 |
+
font-family: "JetBrains Mono", monospace;
|
| 121 |
+
font-size: 22px; font-weight: 500;
|
| 122 |
+
letter-spacing: -0.005em; line-height: 1.3;
|
| 123 |
+
color: var(--ink);
|
| 124 |
+
padding-top: 12px;
|
| 125 |
+
border-top: 1px solid var(--rule);
|
| 126 |
+
}
|
| 127 |
+
.post h2:first-child { border-top: none; padding-top: 0; }
|
| 128 |
+
.post h3 {
|
| 129 |
+
margin: 40px 0 12px;
|
| 130 |
+
font-family: "JetBrains Mono", monospace;
|
| 131 |
+
font-size: 15px; font-weight: 500;
|
| 132 |
+
letter-spacing: 0;
|
| 133 |
+
color: var(--ink);
|
| 134 |
+
text-transform: uppercase;
|
| 135 |
+
letter-spacing: 0.5px;
|
| 136 |
+
}
|
| 137 |
+
.post p { margin: 0 0 14px; }
|
| 138 |
+
.post p > code, .post li > code {
|
| 139 |
+
font-family: "JetBrains Mono", monospace;
|
| 140 |
+
font-size: 0.86em;
|
| 141 |
+
background: var(--soft-cream);
|
| 142 |
+
border: 1px solid var(--rule);
|
| 143 |
+
padding: 1px 5px;
|
| 144 |
+
border-radius: 2px;
|
| 145 |
+
color: var(--green-dark);
|
| 146 |
+
}
|
| 147 |
+
.post pre {
|
| 148 |
+
margin: 14px 0 18px;
|
| 149 |
+
padding: 14px 16px;
|
| 150 |
+
background: var(--card);
|
| 151 |
+
border: 1px solid #ddd;
|
| 152 |
+
overflow-x: auto;
|
| 153 |
+
}
|
| 154 |
+
.post pre code {
|
| 155 |
+
font-family: "JetBrains Mono", monospace;
|
| 156 |
+
font-size: 12px; line-height: 1.6;
|
| 157 |
+
color: var(--ink);
|
| 158 |
+
background: transparent; border: none; padding: 0;
|
| 159 |
+
}
|
| 160 |
+
.post a {
|
| 161 |
+
color: var(--green-dark);
|
| 162 |
+
text-decoration: underline;
|
| 163 |
+
text-decoration-thickness: 1px;
|
| 164 |
+
text-underline-offset: 2px;
|
| 165 |
+
}
|
| 166 |
+
.post a:hover { color: var(--green); }
|
| 167 |
+
.post strong { font-weight: 600; color: var(--ink); }
|
| 168 |
+
.post-image {
|
| 169 |
+
margin: 24px 0;
|
| 170 |
+
}
|
| 171 |
+
.post-image img {
|
| 172 |
+
display: block;
|
| 173 |
+
width: 100%; height: auto;
|
| 174 |
+
border: 1px solid var(--rule);
|
| 175 |
+
}
|
| 176 |
+
|
| 177 |
+
/* --- Widget shell (carbon-demo style) ------------------------------- */
|
| 178 |
+
.widget {
|
| 179 |
+
max-width: 920px;
|
| 180 |
+
margin: 40px auto 8px;
|
| 181 |
+
}
|
| 182 |
+
.widget__head {
|
| 183 |
+
display: flex; align-items: baseline; gap: 14px;
|
| 184 |
+
margin-bottom: 6px;
|
| 185 |
+
}
|
| 186 |
+
.widget__eyebrow {
|
| 187 |
+
font-family: "JetBrains Mono", monospace;
|
| 188 |
+
font-size: 10px; font-weight: 500;
|
| 189 |
+
letter-spacing: 0.22em; text-transform: uppercase;
|
| 190 |
+
color: var(--green);
|
| 191 |
+
}
|
| 192 |
+
.widget__title {
|
| 193 |
+
font-family: "JetBrains Mono", monospace;
|
| 194 |
+
font-size: 14px; font-weight: 500;
|
| 195 |
+
color: var(--ink); letter-spacing: 0;
|
| 196 |
+
}
|
| 197 |
+
.widget__caption {
|
| 198 |
+
font-family: "Inter", sans-serif;
|
| 199 |
+
font-size: 12px; color: var(--ink-soft);
|
| 200 |
+
margin: 8px 4px 14px;
|
| 201 |
+
line-height: 1.5;
|
| 202 |
+
}
|
| 203 |
+
.demo {
|
| 204 |
+
background: var(--card); border: 1px solid #ddd;
|
| 205 |
+
padding: 22px; margin: 8px 0;
|
| 206 |
+
}
|
| 207 |
+
.demo-toolbar {
|
| 208 |
+
display: flex; gap: 8px; align-items: center; flex-wrap: wrap;
|
| 209 |
+
margin-bottom: 14px;
|
| 210 |
+
font-family: "JetBrains Mono", monospace; font-size: 10px;
|
| 211 |
+
color: #666; text-transform: uppercase; letter-spacing: 1.4px;
|
| 212 |
+
}
|
| 213 |
+
.demo-toolbar .spacer { flex: 1; }
|
| 214 |
+
.demo-label {
|
| 215 |
+
font-family: "JetBrains Mono", monospace;
|
| 216 |
+
font-size: 9.5px; color: #6b7a6e;
|
| 217 |
+
text-transform: uppercase; letter-spacing: 1.6px;
|
| 218 |
+
margin: 6px 0 6px;
|
| 219 |
+
}
|
| 220 |
+
|
| 221 |
+
.pill, button.action {
|
| 222 |
+
font-family: "JetBrains Mono", monospace;
|
| 223 |
+
font-size: 11px; font-weight: 400;
|
| 224 |
+
padding: 5px 11px; border: 1px solid #ccc; border-radius: 3px;
|
| 225 |
+
background: #fff; color: #555; cursor: pointer;
|
| 226 |
+
text-transform: uppercase; letter-spacing: 1.5px;
|
| 227 |
+
transition: all 0.12s;
|
| 228 |
+
}
|
| 229 |
+
.pill:hover, button.action:hover { border-color: #888; color: var(--ink); }
|
| 230 |
+
.pill.active, button.action.primary { background: var(--ink); color: #fff; border-color: var(--ink); }
|
| 231 |
+
.pill.active:hover, button.action.primary:hover { background: #000; }
|
| 232 |
+
.pill.gh { background: var(--green); color: #fff; border-color: var(--green); }
|
| 233 |
+
.pill.gh:hover { background: var(--green-dark); border-color: var(--green-dark); }
|
| 234 |
+
.pills { display: inline-flex; flex-wrap: wrap; gap: 6px; }
|
| 235 |
+
.status {
|
| 236 |
+
font-family: "JetBrains Mono", monospace;
|
| 237 |
+
font-size: 10px; color: #666;
|
| 238 |
+
text-transform: uppercase; letter-spacing: 1.5px;
|
| 239 |
+
display: inline-flex; align-items: center; gap: 6px;
|
| 240 |
+
margin-left: 8px;
|
| 241 |
+
}
|
| 242 |
+
.status .dot {
|
| 243 |
+
display: inline-block; width: 6px; height: 6px; border-radius: 50%;
|
| 244 |
+
background: var(--green);
|
| 245 |
+
}
|
| 246 |
+
|
| 247 |
+
input.seq-input, textarea.seq-input {
|
| 248 |
+
width: 100%;
|
| 249 |
+
font-family: "JetBrains Mono", monospace;
|
| 250 |
+
font-size: 13px;
|
| 251 |
+
padding: 9px 12px;
|
| 252 |
+
border: 1px solid #ccc;
|
| 253 |
+
border-radius: 3px;
|
| 254 |
+
letter-spacing: 1px;
|
| 255 |
+
text-transform: uppercase;
|
| 256 |
+
color: var(--ink);
|
| 257 |
+
background: var(--soft-cream);
|
| 258 |
+
resize: vertical;
|
| 259 |
+
}
|
| 260 |
+
textarea.seq-input { letter-spacing: 0.5px; }
|
| 261 |
+
input.seq-input:focus, textarea.seq-input:focus {
|
| 262 |
+
outline: none;
|
| 263 |
+
border-color: var(--green);
|
| 264 |
+
background: #fff;
|
| 265 |
+
}
|
| 266 |
+
|
| 267 |
+
/* base + token chips */
|
| 268 |
+
.base, .tok {
|
| 269 |
+
font-family: "JetBrains Mono", monospace;
|
| 270 |
+
font-size: 11px;
|
| 271 |
+
letter-spacing: 0.5px;
|
| 272 |
+
}
|
| 273 |
+
.base {
|
| 274 |
+
display: inline-block;
|
| 275 |
+
padding: 2px 5px;
|
| 276 |
+
font-weight: 500;
|
| 277 |
+
margin: 1px;
|
| 278 |
+
color: #fff;
|
| 279 |
+
border-radius: 2px;
|
| 280 |
+
min-width: 16px;
|
| 281 |
+
text-align: center;
|
| 282 |
+
}
|
| 283 |
+
.base.A { background: var(--base-a); }
|
| 284 |
+
.base.T { background: var(--base-t); }
|
| 285 |
+
.base.C { background: var(--base-c); }
|
| 286 |
+
.base.G { background: var(--base-g); }
|
| 287 |
+
.base.dim { opacity: 0.4; }
|
| 288 |
+
.base.outline {
|
| 289 |
+
background: transparent;
|
| 290 |
+
border: 1px solid currentColor;
|
| 291 |
+
}
|
| 292 |
+
.base.outline.A { color: var(--base-a); }
|
| 293 |
+
.base.outline.T { color: var(--base-t); }
|
| 294 |
+
.base.outline.C { color: var(--base-c); }
|
| 295 |
+
.base.outline.G { color: var(--base-g); }
|
| 296 |
+
|
| 297 |
+
.tok {
|
| 298 |
+
display: inline-flex;
|
| 299 |
+
align-items: center;
|
| 300 |
+
padding: 4px 8px;
|
| 301 |
+
margin: 2px;
|
| 302 |
+
border: 1px solid #ccc;
|
| 303 |
+
border-radius: 3px;
|
| 304 |
+
background: #fff;
|
| 305 |
+
color: var(--ink);
|
| 306 |
+
}
|
| 307 |
+
.tok.kmer {
|
| 308 |
+
background: rgba(49,127,63,0.10);
|
| 309 |
+
border-color: rgba(49,127,63,0.5);
|
| 310 |
+
color: var(--green-dark);
|
| 311 |
+
font-weight: 500;
|
| 312 |
+
}
|
| 313 |
+
.tok.bpe {
|
| 314 |
+
background: rgba(184,134,44,0.10);
|
| 315 |
+
border-color: rgba(184,134,44,0.5);
|
| 316 |
+
color: var(--amber-dark);
|
| 317 |
+
}
|
| 318 |
+
.tok.text {
|
| 319 |
+
background: #fff;
|
| 320 |
+
border-color: #ccc;
|
| 321 |
+
color: var(--ink);
|
| 322 |
+
}
|
| 323 |
+
.tok.boundary {
|
| 324 |
+
background: var(--ink);
|
| 325 |
+
color: #fff;
|
| 326 |
+
border-color: var(--ink);
|
| 327 |
+
text-transform: uppercase;
|
| 328 |
+
letter-spacing: 1px;
|
| 329 |
+
font-size: 10px;
|
| 330 |
+
}
|
| 331 |
+
.tok.dim { color: #888; background: var(--soft-cream); }
|
| 332 |
+
.tok.ok { background: var(--green); color: #fff; border-color: var(--green); }
|
| 333 |
+
.tok.bad { color: var(--red); border-color: rgba(176,0,32,0.4); background: rgba(176,0,32,0.05); }
|
| 334 |
+
.tok.selected {
|
| 335 |
+
outline: 2px solid var(--green);
|
| 336 |
+
outline-offset: 1px;
|
| 337 |
+
}
|
| 338 |
+
.token-row { display: flex; flex-wrap: wrap; align-items: center; gap: 0; }
|
| 339 |
+
|
| 340 |
+
/* count badges */
|
| 341 |
+
.count-badge {
|
| 342 |
+
display: inline-block;
|
| 343 |
+
font-family: "JetBrains Mono", monospace;
|
| 344 |
+
font-size: 10px; font-weight: 600;
|
| 345 |
+
background: var(--ink); color: var(--bg);
|
| 346 |
+
padding: 2px 7px; border-radius: 2px;
|
| 347 |
+
letter-spacing: 1px;
|
| 348 |
+
}
|
| 349 |
+
.count-badge.green { background: var(--green); color: #fff; }
|
| 350 |
+
.count-badge.amber { background: var(--amber); color: #fff; }
|
| 351 |
+
|
| 352 |
+
/* W1 · animated tokenization (source on top, schemes drop down) ------ */
|
| 353 |
+
.tk-anim { margin-top: 18px; }
|
| 354 |
+
.tk-source, .tk-scheme {
|
| 355 |
+
display: grid;
|
| 356 |
+
grid-template-columns: 124px 1fr;
|
| 357 |
+
gap: 18px;
|
| 358 |
+
align-items: start;
|
| 359 |
+
padding: 8px 0;
|
| 360 |
+
}
|
| 361 |
+
.tk-scheme { padding: 10px 0; min-height: 32px; }
|
| 362 |
+
.tk-source { padding-bottom: 14px; border-bottom: 1px solid var(--rule); margin-bottom: 6px; }
|
| 363 |
+
.tk-meta {
|
| 364 |
+
display: flex;
|
| 365 |
+
flex-direction: column;
|
| 366 |
+
gap: 3px;
|
| 367 |
+
padding-top: 2px;
|
| 368 |
+
}
|
| 369 |
+
.tk-label {
|
| 370 |
+
font-family: "JetBrains Mono", monospace;
|
| 371 |
+
font-size: 9.5px;
|
| 372 |
+
font-weight: 500;
|
| 373 |
+
color: var(--ink-soft);
|
| 374 |
+
text-transform: uppercase;
|
| 375 |
+
letter-spacing: 1.6px;
|
| 376 |
+
}
|
| 377 |
+
.tk-stat {
|
| 378 |
+
font-family: "JetBrains Mono", monospace;
|
| 379 |
+
font-size: 10px;
|
| 380 |
+
color: var(--ink-faint);
|
| 381 |
+
letter-spacing: 0.5px;
|
| 382 |
+
font-variant-numeric: tabular-nums;
|
| 383 |
+
}
|
| 384 |
+
.tk-stat .n {
|
| 385 |
+
font-weight: 600;
|
| 386 |
+
color: var(--ink);
|
| 387 |
+
}
|
| 388 |
+
.tk-scheme[data-scheme="bpe"] .tk-stat .n { color: var(--amber-dark); }
|
| 389 |
+
.tk-scheme[data-scheme="kmer"] .tk-stat .n { color: var(--green-dark); }
|
| 390 |
+
|
| 391 |
+
/* Source: tight grid of small chips */
|
| 392 |
+
.tk-source-strip {
|
| 393 |
+
display: flex;
|
| 394 |
+
flex-wrap: wrap;
|
| 395 |
+
row-gap: 2px;
|
| 396 |
+
}
|
| 397 |
+
.tk-source-strip .tk-base {
|
| 398 |
+
display: inline-flex;
|
| 399 |
+
align-items: center;
|
| 400 |
+
justify-content: center;
|
| 401 |
+
width: 13px;
|
| 402 |
+
height: 17px;
|
| 403 |
+
color: #fff;
|
| 404 |
+
font-family: "JetBrains Mono", monospace;
|
| 405 |
+
font-size: 10px;
|
| 406 |
+
font-weight: 500;
|
| 407 |
+
border-radius: 1px;
|
| 408 |
+
flex: 0 0 13px;
|
| 409 |
+
transition: opacity 0.35s ease, filter 0.35s ease;
|
| 410 |
+
}
|
| 411 |
+
.tk-source-strip .tk-base + .tk-base { margin-left: 1px; }
|
| 412 |
+
.tk-source-strip .tk-base.consumed { opacity: 0.18; filter: grayscale(0.6); }
|
| 413 |
+
.tk-base.A { background: var(--base-a); }
|
| 414 |
+
.tk-base.T { background: var(--base-t); }
|
| 415 |
+
.tk-base.C { background: var(--base-c); }
|
| 416 |
+
.tk-base.G { background: var(--base-g); }
|
| 417 |
+
|
| 418 |
+
/* Scheme strips: hold dropped tokens with <> brackets */
|
| 419 |
+
.tk-scheme-strip {
|
| 420 |
+
display: flex;
|
| 421 |
+
flex-wrap: wrap;
|
| 422 |
+
gap: 1px 8px;
|
| 423 |
+
min-height: 20px;
|
| 424 |
+
}
|
| 425 |
+
.tk-token {
|
| 426 |
+
font-family: "JetBrains Mono", monospace;
|
| 427 |
+
font-size: 12px;
|
| 428 |
+
font-weight: 500;
|
| 429 |
+
letter-spacing: 0.5px;
|
| 430 |
+
display: inline-flex;
|
| 431 |
+
align-items: center;
|
| 432 |
+
opacity: 0;
|
| 433 |
+
will-change: transform, opacity;
|
| 434 |
+
}
|
| 435 |
+
.tk-token.dropped {
|
| 436 |
+
opacity: 1;
|
| 437 |
+
transition:
|
| 438 |
+
transform 0.48s cubic-bezier(0.22, 1, 0.36, 1),
|
| 439 |
+
opacity 0.32s ease;
|
| 440 |
+
}
|
| 441 |
+
.tk-token .br { color: var(--ink-faint); font-weight: 400; }
|
| 442 |
+
.tk-token.tail .br { color: var(--ink-faint); }
|
| 443 |
+
.tk-token.tail { opacity: 0.55; }
|
| 444 |
+
.tk-token.tail.dropped { opacity: 0.55; }
|
| 445 |
+
|
| 446 |
+
|
| 447 |
+
/* Layouts */
|
| 448 |
+
.grid-3 {
|
| 449 |
+
display: grid;
|
| 450 |
+
grid-template-columns: 1fr 1fr 1fr;
|
| 451 |
+
gap: 14px;
|
| 452 |
+
margin-top: 14px;
|
| 453 |
+
}
|
| 454 |
+
.grid-2 {
|
| 455 |
+
display: grid;
|
| 456 |
+
grid-template-columns: 1fr 1fr;
|
| 457 |
+
gap: 14px;
|
| 458 |
+
margin-top: 14px;
|
| 459 |
+
}
|
| 460 |
+
@media (max-width: 720px) {
|
| 461 |
+
.grid-3, .grid-2 { grid-template-columns: 1fr; }
|
| 462 |
+
}
|
| 463 |
+
.col-card {
|
| 464 |
+
background: var(--soft-cream);
|
| 465 |
+
border: 1px solid var(--rule);
|
| 466 |
+
padding: 14px;
|
| 467 |
+
}
|
| 468 |
+
.col-card .col-title {
|
| 469 |
+
font-family: "JetBrains Mono", monospace;
|
| 470 |
+
font-size: 10px; font-weight: 500;
|
| 471 |
+
letter-spacing: 1.6px; text-transform: uppercase;
|
| 472 |
+
color: var(--ink-soft);
|
| 473 |
+
margin-bottom: 8px;
|
| 474 |
+
}
|
| 475 |
+
.col-card .col-foot {
|
| 476 |
+
margin-top: 10px;
|
| 477 |
+
display: flex; align-items: center; gap: 8px;
|
| 478 |
+
font-family: "JetBrains Mono", monospace;
|
| 479 |
+
font-size: 10px; color: var(--ink-soft);
|
| 480 |
+
text-transform: uppercase; letter-spacing: 1.4px;
|
| 481 |
+
}
|
| 482 |
+
|
| 483 |
+
/* Bar chart helpers */
|
| 484 |
+
.bar-row {
|
| 485 |
+
display: grid;
|
| 486 |
+
grid-template-columns: 18px 1fr 64px;
|
| 487 |
+
align-items: center;
|
| 488 |
+
gap: 8px;
|
| 489 |
+
margin: 3px 0;
|
| 490 |
+
font-family: "JetBrains Mono", monospace;
|
| 491 |
+
font-size: 11px;
|
| 492 |
+
}
|
| 493 |
+
.bar-row .bar-label { color: var(--ink-soft); font-weight: 500; text-align: center; }
|
| 494 |
+
.bar-row .bar-track {
|
| 495 |
+
position: relative;
|
| 496 |
+
height: 14px;
|
| 497 |
+
background: var(--soft-cream);
|
| 498 |
+
border: 1px solid var(--rule);
|
| 499 |
+
}
|
| 500 |
+
.bar-row .bar-fill {
|
| 501 |
+
height: 100%;
|
| 502 |
+
transition: width 220ms ease, background-color 220ms ease;
|
| 503 |
+
}
|
| 504 |
+
.bar-row .bar-val { text-align: right; color: var(--ink); font-variant-numeric: tabular-nums; }
|
| 505 |
+
.bar-row.highlight .bar-track { box-shadow: 0 0 0 2px var(--green-tint); }
|
| 506 |
+
|
| 507 |
+
/* 6-position grid (used in W4, W5, W6) */
|
| 508 |
+
.posgrid {
|
| 509 |
+
display: grid;
|
| 510 |
+
grid-template-columns: repeat(6, 1fr);
|
| 511 |
+
gap: 8px;
|
| 512 |
+
}
|
| 513 |
+
.posgrid__col {
|
| 514 |
+
background: var(--soft-cream);
|
| 515 |
+
border: 1px solid var(--rule);
|
| 516 |
+
border-radius: 2px;
|
| 517 |
+
padding: 8px 6px 6px;
|
| 518 |
+
}
|
| 519 |
+
.posgrid__pos {
|
| 520 |
+
font-family: "JetBrains Mono", monospace;
|
| 521 |
+
font-size: 9px; color: var(--ink-faint);
|
| 522 |
+
text-transform: uppercase; letter-spacing: 1.4px;
|
| 523 |
+
text-align: center; margin-bottom: 6px;
|
| 524 |
+
}
|
| 525 |
+
.posgrid__bars {
|
| 526 |
+
display: flex; flex-direction: column; gap: 3px;
|
| 527 |
+
}
|
| 528 |
+
.posgrid .mini-row {
|
| 529 |
+
display: grid; grid-template-columns: 12px 1fr 32px;
|
| 530 |
+
align-items: center; gap: 4px;
|
| 531 |
+
font-family: "JetBrains Mono", monospace; font-size: 10px;
|
| 532 |
+
}
|
| 533 |
+
.posgrid .mini-row .ml { color: var(--ink-soft); text-align: center; font-weight: 500; }
|
| 534 |
+
.posgrid .mini-row .mt { position: relative; height: 10px; background: #fff; border: 1px solid var(--rule); }
|
| 535 |
+
.posgrid .mini-row .mf { display: block; height: 100%; transition: width 200ms ease; }
|
| 536 |
+
.posgrid .mini-row .mv { text-align: right; color: var(--ink); font-variant-numeric: tabular-nums; font-size: 9.5px; }
|
| 537 |
+
.posgrid__col.argmax-A { box-shadow: inset 0 0 0 1px var(--base-a); }
|
| 538 |
+
.posgrid__col.argmax-T { box-shadow: inset 0 0 0 1px var(--base-t); }
|
| 539 |
+
.posgrid__col.argmax-C { box-shadow: inset 0 0 0 1px var(--base-c); }
|
| 540 |
+
.posgrid__col.argmax-G { box-shadow: inset 0 0 0 1px var(--base-g); }
|
| 541 |
+
.posgrid__col.locked { background: #fff; }
|
| 542 |
+
.posgrid__col.frozen .posgrid__bars { opacity: 0.4; }
|
| 543 |
+
.posgrid__sel { display: flex; gap: 3px; margin-top: 8px; }
|
| 544 |
+
.cond-pick {
|
| 545 |
+
flex: 1 1 0; min-width: 0;
|
| 546 |
+
font-family: "JetBrains Mono", monospace; font-size: 10px; font-weight: 600;
|
| 547 |
+
padding: 3px 0; border: 1px solid var(--rule); border-radius: 2px;
|
| 548 |
+
background: #fff; cursor: pointer;
|
| 549 |
+
transition: background 0.12s, border-color 0.12s, color 0.12s;
|
| 550 |
+
}
|
| 551 |
+
.cond-pick:hover { border-color: #888; }
|
| 552 |
+
.cond-pick.active { color: #fff; }
|
| 553 |
+
.cond-pick.active.b-A { background: var(--base-a); border-color: var(--base-a); }
|
| 554 |
+
.cond-pick.active.b-T { background: var(--base-t); border-color: var(--base-t); }
|
| 555 |
+
.cond-pick.active.b-C { background: var(--base-c); border-color: var(--base-c); }
|
| 556 |
+
.cond-pick.active.b-G { background: var(--base-g); border-color: var(--base-g); }
|
| 557 |
+
|
| 558 |
+
/* W3 · real Carbon-500M per-token scoring --------------------------- */
|
| 559 |
+
.w3-itok { cursor: pointer; transition: outline-color 0.12s; }
|
| 560 |
+
.w3-itok:hover { border-color: #888; }
|
| 561 |
+
.w3-sub {
|
| 562 |
+
font-family: "JetBrains Mono", monospace;
|
| 563 |
+
font-size: 11px; color: var(--ink-soft);
|
| 564 |
+
margin: 2px 0 10px; line-height: 1.7;
|
| 565 |
+
}
|
| 566 |
+
.w3-sub b { color: var(--ink); font-weight: 600; }
|
| 567 |
+
.w3-sub .tok { margin: 0 2px; }
|
| 568 |
+
.w3-toprow {
|
| 569 |
+
display: grid;
|
| 570 |
+
grid-template-columns: 92px 1fr 52px;
|
| 571 |
+
gap: 12px; align-items: center;
|
| 572 |
+
margin: 4px 0;
|
| 573 |
+
font-family: "JetBrains Mono", monospace; font-size: 11px;
|
| 574 |
+
}
|
| 575 |
+
.w3-toprow .km { font-weight: 500; letter-spacing: 0.5px; }
|
| 576 |
+
.w3-toprow .bar { height: 13px; background: var(--soft-cream); border: 1px solid var(--rule); }
|
| 577 |
+
.w3-toprow .fill { height: 100%; background: var(--green); transition: width 0.35s ease; }
|
| 578 |
+
.w3-toprow .pct { text-align: right; font-variant-numeric: tabular-nums; color: var(--ink); }
|
| 579 |
+
.w3-toprow.observed .km { color: var(--ink); }
|
| 580 |
+
.w3-toprow.observed .fill { background: var(--amber); }
|
| 581 |
+
.w3-io { display: flex; align-items: flex-end; gap: 18px; flex-wrap: wrap; margin-top: 6px; }
|
| 582 |
+
.w3-io__group { display: flex; flex-direction: column; gap: 6px; }
|
| 583 |
+
.w3-io__lab {
|
| 584 |
+
font-family: "JetBrains Mono", monospace;
|
| 585 |
+
font-size: 9.5px; letter-spacing: 1.6px; text-transform: uppercase; color: var(--ink-faint);
|
| 586 |
+
}
|
| 587 |
+
.w3-io__arrow { font-family: "JetBrains Mono", monospace; font-size: 16px; color: var(--ink-faint); padding-bottom: 5px; }
|
| 588 |
+
.w3-gt-tok { background: rgba(184,134,44,0.12); border-color: rgba(184,134,44,0.5) !important; }
|
| 589 |
+
.w3-chart { display: block; width: 100%; height: auto; margin-top: 6px; background: #fff; border: 1px solid #eee; }
|
| 590 |
+
.w3-legend {
|
| 591 |
+
display: flex; gap: 20px; flex-wrap: wrap; margin-top: 8px;
|
| 592 |
+
font-family: "JetBrains Mono", monospace; font-size: 10px;
|
| 593 |
+
color: var(--ink-soft); text-transform: uppercase; letter-spacing: 1px;
|
| 594 |
+
}
|
| 595 |
+
.w3-legend span { display: inline-flex; align-items: center; gap: 6px; }
|
| 596 |
+
.w3-legend i { width: 12px; height: 3px; display: inline-block; }
|
| 597 |
+
.w3-top { display: flex; gap: 6px; margin-top: 12px; }
|
| 598 |
+
.w3-topchip {
|
| 599 |
+
flex: 1 1 0; min-width: 0;
|
| 600 |
+
display: inline-flex; flex-direction: column; align-items: center; gap: 2px;
|
| 601 |
+
font-family: "JetBrains Mono", monospace;
|
| 602 |
+
border: 1px solid var(--rule); background: var(--soft-cream);
|
| 603 |
+
border-radius: 3px; padding: 6px 4px;
|
| 604 |
+
}
|
| 605 |
+
.w3-topchip .km { font-size: 12px; font-weight: 500; letter-spacing: 0.5px; }
|
| 606 |
+
.w3-topchip .pct { font-size: 9px; color: var(--ink-soft); font-variant-numeric: tabular-nums; }
|
| 607 |
+
.posgrid__col.clickable { cursor: pointer; }
|
| 608 |
+
.posgrid__col.sel { outline: 2px solid var(--ink); outline-offset: 2px; }
|
| 609 |
+
.w3-allgrid {
|
| 610 |
+
display: grid;
|
| 611 |
+
grid-template-columns: repeat(128, 1fr);
|
| 612 |
+
gap: 1px;
|
| 613 |
+
margin-top: 8px;
|
| 614 |
+
}
|
| 615 |
+
.w3-cell { aspect-ratio: 1; background: #d3d0c4; transition: background 0.15s ease; }
|
| 616 |
+
.w3-cell.first {
|
| 617 |
+
outline: 2px solid var(--ink);
|
| 618 |
+
outline-offset: 1px;
|
| 619 |
+
position: relative; z-index: 2;
|
| 620 |
+
}
|
| 621 |
+
.w3-order {
|
| 622 |
+
display: inline-flex; align-items: center; gap: 8px;
|
| 623 |
+
font-family: "JetBrains Mono", monospace; font-size: 9.5px;
|
| 624 |
+
text-transform: uppercase; letter-spacing: 1.4px; color: var(--ink-faint);
|
| 625 |
+
}
|
| 626 |
+
.w3-snake { width: 42px; height: auto; color: var(--ink-soft); display: block; }
|
| 627 |
+
|
| 628 |
+
/* WCOND · conditional single-nucleotide decoding -------------------- */
|
| 629 |
+
.cond-slots { display: flex; gap: 6px; }
|
| 630 |
+
.cond-slot {
|
| 631 |
+
width: 40px; height: 40px;
|
| 632 |
+
display: flex; align-items: center; justify-content: center;
|
| 633 |
+
border: 1px solid var(--rule); border-radius: 3px; background: var(--soft-cream);
|
| 634 |
+
font-family: "JetBrains Mono", monospace; font-size: 17px; font-weight: 600;
|
| 635 |
+
color: var(--ink);
|
| 636 |
+
}
|
| 637 |
+
.cond-slot.active { outline: 2px solid var(--ink); outline-offset: 1px; color: var(--ink-faint); }
|
| 638 |
+
.cond-slot.pending { color: var(--ink-faint); background: transparent; border-style: dashed; }
|
| 639 |
+
.cond-slot.A { background: rgba(26,122,64,0.13); border-color: rgba(26,122,64,0.42); color: var(--base-a); }
|
| 640 |
+
.cond-slot.T { background: rgba(176,0,32,0.09); border-color: rgba(176,0,32,0.36); color: var(--base-t); }
|
| 641 |
+
.cond-slot.C { background: rgba(44,90,160,0.11); border-color: rgba(44,90,160,0.40); color: var(--base-c); }
|
| 642 |
+
.cond-slot.G { background: rgba(184,134,44,0.14); border-color: rgba(184,134,44,0.42); color: var(--amber-dark); }
|
| 643 |
+
.cond-choices { display: flex; gap: 10px; }
|
| 644 |
+
.cond-choice {
|
| 645 |
+
flex: 1 1 0; cursor: pointer; border: 1px solid var(--rule); border-radius: 3px;
|
| 646 |
+
padding: 10px 12px; background: var(--soft-cream);
|
| 647 |
+
display: flex; flex-direction: column; gap: 7px;
|
| 648 |
+
transition: background 0.12s, border-color 0.12s;
|
| 649 |
+
}
|
| 650 |
+
.cond-choice:hover { background: #fff; border-color: #888; }
|
| 651 |
+
.cond-choice__top { display: flex; justify-content: space-between; align-items: baseline; font-family: "JetBrains Mono", monospace; }
|
| 652 |
+
.cond-choice__base { font-size: 16px; font-weight: 600; }
|
| 653 |
+
.cond-choice__pct { font-size: 11px; color: var(--ink-soft); font-variant-numeric: tabular-nums; }
|
| 654 |
+
.cond-choice__bar { height: 8px; background: #fff; border: 1px solid var(--rule); }
|
| 655 |
+
.cond-choice__fill { display: block; height: 100%; transition: width 0.25s ease; }
|
| 656 |
+
.cond-done { font-family: "JetBrains Mono", monospace; font-size: 13px; color: var(--ink); display: flex; align-items: center; gap: 8px; flex-wrap: wrap; }
|
| 657 |
+
.cond-note {
|
| 658 |
+
font-family: "Inter", sans-serif; font-size: 12px; color: var(--ink-soft);
|
| 659 |
+
background: var(--soft-cream); border-left: 2px solid var(--green);
|
| 660 |
+
padding: 9px 12px; margin-top: 14px; line-height: 1.5;
|
| 661 |
+
}
|
| 662 |
+
.cond-note .tok { margin: 0 2px; }
|
| 663 |
+
|
| 664 |
+
/* FNS factorization figure ------------------------------------------ */
|
| 665 |
+
.fns-seq-input {
|
| 666 |
+
width: 120px;
|
| 667 |
+
text-align: center;
|
| 668 |
+
text-transform: uppercase;
|
| 669 |
+
}
|
| 670 |
+
.fns-viz {
|
| 671 |
+
font-family: "JetBrains Mono", monospace;
|
| 672 |
+
padding: 10px 0 6px;
|
| 673 |
+
}
|
| 674 |
+
.fns-truth, .fns-row {
|
| 675 |
+
display: grid;
|
| 676 |
+
grid-template-columns: 222px repeat(6, 34px) 28px;
|
| 677 |
+
align-items: center;
|
| 678 |
+
column-gap: 7px;
|
| 679 |
+
min-width: 480px;
|
| 680 |
+
}
|
| 681 |
+
.fns-truth { margin-bottom: 16px; }
|
| 682 |
+
.fns-row { margin: 12px 0; }
|
| 683 |
+
.fns-gtlabel {
|
| 684 |
+
font-family: "JetBrains Mono", monospace;
|
| 685 |
+
font-size: 10px;
|
| 686 |
+
font-weight: 400;
|
| 687 |
+
letter-spacing: 1.6px;
|
| 688 |
+
text-transform: uppercase;
|
| 689 |
+
color: var(--ink-faint);
|
| 690 |
+
}
|
| 691 |
+
.fns-eq {
|
| 692 |
+
font-size: 16px;
|
| 693 |
+
color: var(--ink);
|
| 694 |
+
text-align: right;
|
| 695 |
+
white-space: nowrap;
|
| 696 |
+
}
|
| 697 |
+
.fns-eq sub, .fns-eq sup { font-size: 11px; }
|
| 698 |
+
.fns-eq .sum { color: var(--ink-soft); }
|
| 699 |
+
.fns-bracket {
|
| 700 |
+
font-family: "Inter", sans-serif;
|
| 701 |
+
font-size: 34px;
|
| 702 |
+
font-weight: 200;
|
| 703 |
+
line-height: 0;
|
| 704 |
+
color: var(--ink-soft);
|
| 705 |
+
vertical-align: middle;
|
| 706 |
+
transform: scaleX(0.7);
|
| 707 |
+
display: inline-block;
|
| 708 |
+
}
|
| 709 |
+
.fns-box {
|
| 710 |
+
width: 30px; height: 30px;
|
| 711 |
+
display: inline-flex; align-items: center; justify-content: center;
|
| 712 |
+
font-family: "JetBrains Mono", monospace;
|
| 713 |
+
font-size: 14px; font-weight: 600;
|
| 714 |
+
border-radius: 3px; border: 1px solid;
|
| 715 |
+
transition: background 0.15s, border-color 0.15s, color 0.15s;
|
| 716 |
+
}
|
| 717 |
+
.fns-box.A { background: rgba(26,122,64,0.13); border-color: rgba(26,122,64,0.42); color: var(--base-a); }
|
| 718 |
+
.fns-box.T { background: rgba(176,0,32,0.09); border-color: rgba(176,0,32,0.36); color: var(--base-t); }
|
| 719 |
+
.fns-box.C { background: rgba(44,90,160,0.11); border-color: rgba(44,90,160,0.40); color: var(--base-c); }
|
| 720 |
+
.fns-box.G { background: rgba(184,134,44,0.14); border-color: rgba(184,134,44,0.42); color: var(--amber-dark); }
|
| 721 |
+
.fns-box.wild { opacity: 0.38; }
|
| 722 |
+
.fns-loss {
|
| 723 |
+
margin-top: 20px;
|
| 724 |
+
padding-top: 16px;
|
| 725 |
+
border-top: 1px solid var(--rule);
|
| 726 |
+
font-family: "JetBrains Mono", monospace;
|
| 727 |
+
font-size: 16px;
|
| 728 |
+
color: var(--ink);
|
| 729 |
+
text-align: center;
|
| 730 |
+
}
|
| 731 |
+
.fns-loss sup, .fns-loss sub { font-size: 11px; }
|
| 732 |
+
.fns-loss .frac { display: inline-block; margin: 0 1px; }
|
| 733 |
+
.fns-loss .fns-term { margin: 0 3px; white-space: nowrap; }
|
| 734 |
+
.fns-explain {
|
| 735 |
+
margin-top: 18px;
|
| 736 |
+
padding-top: 16px;
|
| 737 |
+
border-top: 1px solid var(--rule);
|
| 738 |
+
font-family: "Inter", sans-serif;
|
| 739 |
+
font-size: 13px;
|
| 740 |
+
line-height: 1.62;
|
| 741 |
+
color: var(--ink-soft);
|
| 742 |
+
}
|
| 743 |
+
.fns-explain p { margin: 0 0 11px; }
|
| 744 |
+
.fns-explain p:last-child { margin-bottom: 0; }
|
| 745 |
+
.fns-explain strong { color: var(--ink); font-weight: 600; }
|
| 746 |
+
.fns-explain .mono {
|
| 747 |
+
font-family: "JetBrains Mono", monospace;
|
| 748 |
+
font-size: 12px;
|
| 749 |
+
color: var(--ink);
|
| 750 |
+
}
|
| 751 |
+
.fns-explain .mono sup, .fns-explain .mono sub { font-size: 9px; }
|
| 752 |
+
|
| 753 |
+
/* Big stat tile */
|
| 754 |
+
.stat-tile {
|
| 755 |
+
background: var(--soft-cream);
|
| 756 |
+
border: 1px solid var(--rule);
|
| 757 |
+
padding: 14px 16px;
|
| 758 |
+
text-align: left;
|
| 759 |
+
}
|
| 760 |
+
.stat-tile__label {
|
| 761 |
+
font-family: "JetBrains Mono", monospace;
|
| 762 |
+
font-size: 10px; color: var(--ink-soft);
|
| 763 |
+
text-transform: uppercase; letter-spacing: 1.6px;
|
| 764 |
+
margin-bottom: 6px;
|
| 765 |
+
}
|
| 766 |
+
.stat-tile__value {
|
| 767 |
+
font-family: "JetBrains Mono", monospace;
|
| 768 |
+
font-size: 26px; font-weight: 500;
|
| 769 |
+
color: var(--ink);
|
| 770 |
+
}
|
| 771 |
+
.stat-tile__sub {
|
| 772 |
+
font-family: "JetBrains Mono", monospace;
|
| 773 |
+
font-size: 10px; color: var(--ink-soft);
|
| 774 |
+
margin-top: 4px; letter-spacing: 0.5px;
|
| 775 |
+
}
|
| 776 |
+
.stat-tile.green .stat-tile__value { color: var(--green-dark); }
|
| 777 |
+
.stat-tile.red .stat-tile__value { color: var(--red); }
|
| 778 |
+
|
| 779 |
+
/* Footer */
|
| 780 |
+
.post-foot {
|
| 781 |
+
max-width: 760px;
|
| 782 |
+
margin: 64px auto 0;
|
| 783 |
+
padding: 24px 32px 64px;
|
| 784 |
+
border-top: 1px solid var(--rule);
|
| 785 |
+
font-family: "JetBrains Mono", monospace;
|
| 786 |
+
font-size: 11px; color: var(--ink-soft);
|
| 787 |
+
text-transform: uppercase; letter-spacing: 1.4px;
|
| 788 |
+
}
|
| 789 |
+
.post-foot a { color: var(--green-dark); text-decoration: none; }
|
| 790 |
+
.post-foot a:hover { color: var(--green); }
|
| 791 |
+
|
| 792 |
+
/* Position picker (W7) */
|
| 793 |
+
.seq-track {
|
| 794 |
+
font-family: "JetBrains Mono", monospace;
|
| 795 |
+
font-size: 14px;
|
| 796 |
+
letter-spacing: 0;
|
| 797 |
+
background: var(--soft-cream);
|
| 798 |
+
border: 1px solid var(--rule);
|
| 799 |
+
padding: 10px 12px;
|
| 800 |
+
display: flex; flex-wrap: wrap; gap: 1px;
|
| 801 |
+
user-select: none;
|
| 802 |
+
}
|
| 803 |
+
.seq-track__b {
|
| 804 |
+
display: inline-flex; align-items: center; justify-content: center;
|
| 805 |
+
width: 22px; height: 26px;
|
| 806 |
+
cursor: pointer;
|
| 807 |
+
border-radius: 2px;
|
| 808 |
+
color: #fff;
|
| 809 |
+
font-weight: 500;
|
| 810 |
+
transition: transform 0.1s ease, box-shadow 0.1s ease;
|
| 811 |
+
}
|
| 812 |
+
.seq-track__b:hover { transform: translateY(-1px); }
|
| 813 |
+
.seq-track__b.A { background: var(--base-a); }
|
| 814 |
+
.seq-track__b.T { background: var(--base-t); }
|
| 815 |
+
.seq-track__b.C { background: var(--base-c); }
|
| 816 |
+
.seq-track__b.G { background: var(--base-g); }
|
| 817 |
+
.seq-track__b.selected {
|
| 818 |
+
box-shadow: 0 0 0 2px var(--ink), 0 0 0 4px var(--bg);
|
| 819 |
+
}
|
| 820 |
+
|
| 821 |
+
/* Per-base text color (used wherever DNA letters appear in prose) */
|
| 822 |
+
.b-A, .b-T, .b-C, .b-G { font-weight: 500; }
|
| 823 |
+
.b-A { color: var(--base-a); }
|
| 824 |
+
.b-T { color: var(--base-t); }
|
| 825 |
+
.b-C { color: var(--base-c); }
|
| 826 |
+
.b-G { color: var(--base-g); }
|
| 827 |
+
|
| 828 |
+
/* k-mer token: colored bases inside <>, no chrome */
|
| 829 |
+
.kmer-token, .raw-seq {
|
| 830 |
+
font-family: "JetBrains Mono", monospace;
|
| 831 |
+
font-size: 12px;
|
| 832 |
+
font-weight: 500;
|
| 833 |
+
letter-spacing: 0.5px;
|
| 834 |
+
}
|
| 835 |
+
.kmer-token {
|
| 836 |
+
display: inline-flex;
|
| 837 |
+
align-items: center;
|
| 838 |
+
padding: 2px 0;
|
| 839 |
+
white-space: nowrap;
|
| 840 |
+
}
|
| 841 |
+
.kmer-token .br { color: var(--ink-faint); font-weight: 400; }
|
| 842 |
+
.kmer-token.muted { opacity: 0.45; }
|
| 843 |
+
.raw-seq { display: inline-flex; padding: 2px 0; }
|
| 844 |
+
|
| 845 |
+
.bpe-flow {
|
| 846 |
+
display: flex; align-items: center; flex-wrap: wrap;
|
| 847 |
+
gap: 18px;
|
| 848 |
+
margin: 10px 0 8px;
|
| 849 |
+
}
|
| 850 |
+
.bpe-flow .arrow {
|
| 851 |
+
font-family: "JetBrains Mono", monospace;
|
| 852 |
+
font-size: 16px;
|
| 853 |
+
color: var(--ink-faint);
|
| 854 |
+
}
|
| 855 |
+
|
| 856 |
+
/* Line 2: source token, SVG fan-out, candidate rows ----------------- */
|
| 857 |
+
.bpe-branches {
|
| 858 |
+
display: grid;
|
| 859 |
+
grid-template-columns: auto 96px 1fr;
|
| 860 |
+
grid-template-rows: auto 150px;
|
| 861 |
+
gap: 0;
|
| 862 |
+
margin-top: 12px;
|
| 863 |
+
}
|
| 864 |
+
.branch-source {
|
| 865 |
+
grid-column: 1; grid-row: 2;
|
| 866 |
+
align-self: center;
|
| 867 |
+
display: flex; flex-direction: column; align-items: center; gap: 6px;
|
| 868 |
+
padding-right: 8px;
|
| 869 |
+
}
|
| 870 |
+
.branch-source__hint {
|
| 871 |
+
font-family: "JetBrains Mono", monospace;
|
| 872 |
+
font-size: 9px; color: var(--ink-faint);
|
| 873 |
+
text-transform: uppercase; letter-spacing: 1.6px;
|
| 874 |
+
}
|
| 875 |
+
.branch-lines {
|
| 876 |
+
grid-column: 2; grid-row: 2;
|
| 877 |
+
width: 96px; height: 150px;
|
| 878 |
+
display: block;
|
| 879 |
+
}
|
| 880 |
+
.branch-lines path {
|
| 881 |
+
fill: none;
|
| 882 |
+
stroke: #ccc;
|
| 883 |
+
stroke-width: 1.4;
|
| 884 |
+
transition: stroke 0.15s, stroke-width 0.15s;
|
| 885 |
+
}
|
| 886 |
+
.branch-lines path.selected { stroke: var(--green); stroke-width: 2.2; }
|
| 887 |
+
.branch-header {
|
| 888 |
+
grid-column: 3; grid-row: 1;
|
| 889 |
+
display: grid;
|
| 890 |
+
grid-template-columns: 100px 60px 60px;
|
| 891 |
+
gap: 18px;
|
| 892 |
+
padding: 0 12px 10px;
|
| 893 |
+
font-family: "JetBrains Mono", monospace;
|
| 894 |
+
font-size: 9.5px;
|
| 895 |
+
font-weight: 500;
|
| 896 |
+
letter-spacing: 1.6px;
|
| 897 |
+
text-transform: uppercase;
|
| 898 |
+
color: var(--ink-soft);
|
| 899 |
+
}
|
| 900 |
+
.branch-header > span { text-align: center; }
|
| 901 |
+
.branch-header > span:first-child { text-align: left; color: var(--ink-faint); }
|
| 902 |
+
.branch-targets {
|
| 903 |
+
grid-column: 3; grid-row: 2;
|
| 904 |
+
display: grid;
|
| 905 |
+
grid-template-rows: repeat(5, 26px);
|
| 906 |
+
row-gap: 5px;
|
| 907 |
+
align-content: center;
|
| 908 |
+
justify-content: start;
|
| 909 |
+
height: 150px;
|
| 910 |
+
}
|
| 911 |
+
.cand-row {
|
| 912 |
+
display: grid;
|
| 913 |
+
grid-template-columns: 100px 60px 60px;
|
| 914 |
+
gap: 18px;
|
| 915 |
+
align-items: center;
|
| 916 |
+
padding: 2px 12px;
|
| 917 |
+
cursor: pointer;
|
| 918 |
+
border-radius: 2px;
|
| 919 |
+
transition: background 0.12s;
|
| 920 |
+
}
|
| 921 |
+
.cand-row:hover { background: rgba(0,0,0,0.03); }
|
| 922 |
+
.cand-row.selected { background: var(--green-tint); }
|
| 923 |
+
.mark {
|
| 924 |
+
font-family: "JetBrains Mono", monospace;
|
| 925 |
+
font-size: 14px;
|
| 926 |
+
font-weight: 500;
|
| 927 |
+
text-align: center;
|
| 928 |
+
line-height: 1;
|
| 929 |
+
user-select: none;
|
| 930 |
+
}
|
| 931 |
+
.mark.ok { color: var(--green); }
|
| 932 |
+
.mark.bad { color: var(--red); }
|
| 933 |
+
|
| 934 |
+
/* explanation note */
|
| 935 |
+
.note {
|
| 936 |
+
font-family: "Inter", sans-serif;
|
| 937 |
+
font-size: 12px; line-height: 1.55;
|
| 938 |
+
color: var(--ink-soft);
|
| 939 |
+
background: var(--soft-cream);
|
| 940 |
+
border-left: 2px solid var(--green);
|
| 941 |
+
padding: 10px 12px;
|
| 942 |
+
margin-top: 14px;
|
| 943 |
+
}
|
| 944 |
+
.note code {
|
| 945 |
+
font-family: "JetBrains Mono", monospace;
|
| 946 |
+
font-size: 11px;
|
| 947 |
+
background: #fff;
|
| 948 |
+
border: 1px solid var(--rule);
|
| 949 |
+
padding: 0 4px; border-radius: 2px;
|
| 950 |
+
color: var(--green-dark);
|
| 951 |
+
}
|
| 952 |
+
.formula {
|
| 953 |
+
font-family: "JetBrains Mono", monospace;
|
| 954 |
+
font-size: 12px;
|
| 955 |
+
background: var(--soft-cream);
|
| 956 |
+
border: 1px solid var(--rule);
|
| 957 |
+
padding: 10px 12px;
|
| 958 |
+
margin-top: 10px;
|
| 959 |
+
color: var(--ink);
|
| 960 |
+
overflow-x: auto;
|
| 961 |
+
}
|
| 962 |
+
.formula .hl { color: var(--green-dark); font-weight: 600; }
|
| 963 |
+
|
| 964 |
+
|
| 965 |
+
|
| 966 |
+
/* Iframe wrapper: tighten margins so the widget sits flush in an embed. */
|
| 967 |
+
body { padding: 20px 24px; background: var(--bg); }
|
| 968 |
+
.widget { max-width: 880px; margin: 0 auto; padding: 0; border: 0; }
|
| 969 |
+
</style>
|
| 970 |
+
</head>
|
| 971 |
+
<body>
|
| 972 |
+
<aside class="widget" id="w1">
|
| 973 |
+
<div class="widget__head">
|
| 974 |
+
<span class="widget__eyebrow">§ Widget · 02</span>
|
| 975 |
+
<span class="widget__title">Per-base, BPE, and 6-mer on the same DNA sequence</span>
|
| 976 |
+
</div>
|
| 977 |
+
<p class="widget__caption">
|
| 978 |
+
Press <strong>play</strong> to watch the same sequence get cut three different ways — per-base, with a toy BPE
|
| 979 |
+
vocabulary (greedy longest-match), and with non-overlapping 6-mers. The cuts appear left-to-right on the same
|
| 980 |
+
time axis, so divergence between the schemes is visible directly.
|
| 981 |
+
</p>
|
| 982 |
+
<div class="demo">
|
| 983 |
+
<div class="demo-toolbar">
|
| 984 |
+
<span>Sequence · <span id="w1-len">0 bp</span></span>
|
| 985 |
+
<span class="spacer"></span>
|
| 986 |
+
<button class="action primary" id="w1-play">▶ TOKENIZE</button>
|
| 987 |
+
</div>
|
| 988 |
+
<input class="seq-input" id="w1-seq" value="ACGTATCGTATAGGCTAACGGATCATGCTAACGGATCATGCTAGCTAATGCATGCATGCAATCGATCGGGCCTTAAGCTAGCTACGATCGTAGCAT">
|
| 989 |
+
|
| 990 |
+
<div class="tk-anim">
|
| 991 |
+
<div class="tk-source">
|
| 992 |
+
<div class="tk-meta">
|
| 993 |
+
<span class="tk-label">Sequence</span>
|
| 994 |
+
<span class="tk-stat"><span class="n" id="w1-bp">0</span> bp</span>
|
| 995 |
+
</div>
|
| 996 |
+
<div class="tk-source-strip" id="w1-source"></div>
|
| 997 |
+
</div>
|
| 998 |
+
<div class="tk-scheme" data-scheme="base">
|
| 999 |
+
<div class="tk-meta">
|
| 1000 |
+
<span class="tk-label">Per-base</span>
|
| 1001 |
+
<span class="tk-stat">Tokens: <span class="n" id="w1-base-count">0</span></span>
|
| 1002 |
+
<span class="tk-stat">Compression: <span class="n" id="w1-base-ratio">1.0</span></span>
|
| 1003 |
+
</div>
|
| 1004 |
+
<div class="tk-scheme-strip" id="w1-base"></div>
|
| 1005 |
+
</div>
|
| 1006 |
+
<div class="tk-scheme" data-scheme="bpe">
|
| 1007 |
+
<div class="tk-meta">
|
| 1008 |
+
<span class="tk-label">BPE</span>
|
| 1009 |
+
<span class="tk-stat">Tokens: <span class="n" id="w1-bpe-count">0</span></span>
|
| 1010 |
+
<span class="tk-stat">Compression: <span class="n" id="w1-bpe-ratio">−</span></span>
|
| 1011 |
+
</div>
|
| 1012 |
+
<div class="tk-scheme-strip" id="w1-bpe"></div>
|
| 1013 |
+
</div>
|
| 1014 |
+
<div class="tk-scheme" data-scheme="kmer">
|
| 1015 |
+
<div class="tk-meta">
|
| 1016 |
+
<span class="tk-label">6-mer</span>
|
| 1017 |
+
<span class="tk-stat">Tokens: <span class="n" id="w1-kmer-count">0</span></span>
|
| 1018 |
+
<span class="tk-stat">Compression: <span class="n" id="w1-kmer-ratio">−</span></span>
|
| 1019 |
+
</div>
|
| 1020 |
+
<div class="tk-scheme-strip" id="w1-kmer"></div>
|
| 1021 |
+
</div>
|
| 1022 |
+
</div>
|
| 1023 |
+
</div>
|
| 1024 |
+
</aside>
|
| 1025 |
+
<script>
|
| 1026 |
+
|
| 1027 |
+
// ============================================================
|
| 1028 |
+
// Shared utilities
|
| 1029 |
+
// ============================================================
|
| 1030 |
+
const BASES = ['A', 'T', 'C', 'G'];
|
| 1031 |
+
const BASE_IDX = {A: 0, T: 1, C: 2, G: 3};
|
| 1032 |
+
const BASE_COLOR = { A: 'var(--base-a)', T: 'var(--base-t)', C: 'var(--base-c)', G: 'var(--base-g)' };
|
| 1033 |
+
|
| 1034 |
+
// FNV-1a 32-bit
|
| 1035 |
+
function hash32(s) {
|
| 1036 |
+
let h = 0x811c9dc5;
|
| 1037 |
+
for (let i = 0; i < s.length; i++) {
|
| 1038 |
+
h ^= s.charCodeAt(i);
|
| 1039 |
+
h = Math.imul(h, 0x01000193);
|
| 1040 |
+
}
|
| 1041 |
+
return h >>> 0;
|
| 1042 |
+
}
|
| 1043 |
+
function rand01(seed) {
|
| 1044 |
+
const h = hash32(String(seed));
|
| 1045 |
+
return (h % 1000003) / 1000003;
|
| 1046 |
+
}
|
| 1047 |
+
function softmax(arr) {
|
| 1048 |
+
let m = -Infinity;
|
| 1049 |
+
for (let i = 0; i < arr.length; i++) if (arr[i] > m) m = arr[i];
|
| 1050 |
+
const out = new Float64Array(arr.length);
|
| 1051 |
+
let s = 0;
|
| 1052 |
+
for (let i = 0; i < arr.length; i++) {
|
| 1053 |
+
out[i] = Math.exp(arr[i] - m);
|
| 1054 |
+
s += out[i];
|
| 1055 |
+
}
|
| 1056 |
+
for (let i = 0; i < arr.length; i++) out[i] /= s;
|
| 1057 |
+
return out;
|
| 1058 |
+
}
|
| 1059 |
+
function cleanDNA(s) {
|
| 1060 |
+
return (s || '').toUpperCase().replace(/[^ACGT]/g, '');
|
| 1061 |
+
}
|
| 1062 |
+
function escapeHTML(s) {
|
| 1063 |
+
return String(s).replace(/&/g, '&').replace(/</g, '<').replace(/>/g, '>');
|
| 1064 |
+
}
|
| 1065 |
+
|
| 1066 |
+
// 6-mer integer <-> string helpers
|
| 1067 |
+
function kmerToIdx(k) {
|
| 1068 |
+
let i = 0;
|
| 1069 |
+
for (let p = 0; p < k.length; p++) {
|
| 1070 |
+
const b = BASE_IDX[k[p]];
|
| 1071 |
+
if (b == null) return -1;
|
| 1072 |
+
i = i * 4 + b;
|
| 1073 |
+
}
|
| 1074 |
+
return i;
|
| 1075 |
+
}
|
| 1076 |
+
function idxToKmer(i, k = 6) {
|
| 1077 |
+
let s = '';
|
| 1078 |
+
for (let p = k - 1; p >= 0; p--) {
|
| 1079 |
+
s = BASES[(i >> (2 * p)) & 3] + s;
|
| 1080 |
+
}
|
| 1081 |
+
return s;
|
| 1082 |
+
}
|
| 1083 |
+
function baseAt(i, p) {
|
| 1084 |
+
// p in [0..5], 0 is leftmost
|
| 1085 |
+
return (i >> (2 * (5 - p))) & 3;
|
| 1086 |
+
}
|
| 1087 |
+
|
| 1088 |
+
// generate a 4096-d distribution conditioned on a string seed
|
| 1089 |
+
function distribution4096(seed) {
|
| 1090 |
+
const logits = new Float64Array(4096);
|
| 1091 |
+
for (let i = 0; i < 4096; i++) {
|
| 1092 |
+
const a = rand01(seed + ':a:' + i);
|
| 1093 |
+
const b = rand01(seed + ':b:' + (i * 7919));
|
| 1094 |
+
const c = rand01(seed + ':c:' + (i * 65537));
|
| 1095 |
+
// mix a few uniforms → roughly-normal logit centered near 0
|
| 1096 |
+
logits[i] = (a + b + c - 1.5) * 3.2;
|
| 1097 |
+
}
|
| 1098 |
+
return softmax(logits);
|
| 1099 |
+
}
|
| 1100 |
+
function marginals6x4(probs) {
|
| 1101 |
+
const m = [[0,0,0,0],[0,0,0,0],[0,0,0,0],[0,0,0,0],[0,0,0,0],[0,0,0,0]];
|
| 1102 |
+
for (let i = 0; i < 4096; i++) {
|
| 1103 |
+
const p = probs[i];
|
| 1104 |
+
for (let pos = 0; pos < 6; pos++) {
|
| 1105 |
+
m[pos][baseAt(i, pos)] += p;
|
| 1106 |
+
}
|
| 1107 |
+
}
|
| 1108 |
+
return m;
|
| 1109 |
+
}
|
| 1110 |
+
function fmtPct(p) { return (p * 100).toFixed(2) + '%'; }
|
| 1111 |
+
function fmt(p, d=4) { return Number(p).toFixed(d); }
|
| 1112 |
+
|
| 1113 |
+
// Render a row of per-base bars (used for variants of W4/W6/W7)
|
| 1114 |
+
function renderPosCol(parent, posIndex, dist4, mode) {
|
| 1115 |
+
const max = Math.max(0.0001, ...dist4);
|
| 1116 |
+
let argmax = 0;
|
| 1117 |
+
for (let i = 1; i < 4; i++) if (dist4[i] > dist4[argmax]) argmax = i;
|
| 1118 |
+
const col = document.createElement('div');
|
| 1119 |
+
col.className = 'posgrid__col' + (mode === 'argmax' ? ' argmax-' + BASES[argmax] : '');
|
| 1120 |
+
col.innerHTML =
|
| 1121 |
+
`<div class="posgrid__pos">pos ${posIndex + 1}</div>` +
|
| 1122 |
+
`<div class="posgrid__bars">` +
|
| 1123 |
+
BASES.map((b, j) => {
|
| 1124 |
+
const w = (dist4[j] / max) * 100;
|
| 1125 |
+
const isMax = j === argmax;
|
| 1126 |
+
return `<div class="mini-row">
|
| 1127 |
+
<span class="ml">${b}</span>
|
| 1128 |
+
<span class="mt"><span class="mf" style="width:${w.toFixed(1)}%;background:${BASE_COLOR[b]};opacity:${isMax ? 1 : 0.55}"></span></span>
|
| 1129 |
+
<span class="mv">${(dist4[j] * 100).toFixed(1)}</span>
|
| 1130 |
+
</div>`;
|
| 1131 |
+
}).join('') +
|
| 1132 |
+
`</div>`;
|
| 1133 |
+
parent.appendChild(col);
|
| 1134 |
+
}
|
| 1135 |
+
|
| 1136 |
+
function basesHTML(seq) {
|
| 1137 |
+
return Array.from(seq).map((c) => `<span class="base ${c}">${c}</span>`).join('');
|
| 1138 |
+
}
|
| 1139 |
+
|
| 1140 |
+
(function setupW1() {
|
| 1141 |
+
// toy BPE vocab: longer entries first for greedy match
|
| 1142 |
+
const BPE_VOCAB = [
|
| 1143 |
+
'ACGTA', 'TATAG', 'ATCGA', 'GATCA', 'TAGCT', 'AGCTA', 'CGATC', 'TGCTA',
|
| 1144 |
+
'ATCG', 'GATC', 'TATA', 'AGCT', 'GCTA', 'CTAG', 'ACGT', 'TGCA',
|
| 1145 |
+
'AT', 'CG', 'GC', 'TA', 'AA', 'TT', 'CC', 'GG', 'AC', 'GT', 'CT', 'GA',
|
| 1146 |
+
'A', 'C', 'G', 'T',
|
| 1147 |
+
];
|
| 1148 |
+
function bpeTokens(seq) {
|
| 1149 |
+
const out = [];
|
| 1150 |
+
let i = 0;
|
| 1151 |
+
while (i < seq.length) {
|
| 1152 |
+
let hit = null;
|
| 1153 |
+
for (const v of BPE_VOCAB) if (seq.startsWith(v, i)) { hit = v; break; }
|
| 1154 |
+
out.push(hit || seq[i]);
|
| 1155 |
+
i += (hit ? hit.length : 1);
|
| 1156 |
+
}
|
| 1157 |
+
return out;
|
| 1158 |
+
}
|
| 1159 |
+
|
| 1160 |
+
// tokensFor: returns [{ text, startPos, endPos, tail }]
|
| 1161 |
+
function tokensBase(seq) {
|
| 1162 |
+
return Array.from(seq).map((c, i) => ({ text: c, startPos: i, endPos: i + 1, tail: false }));
|
| 1163 |
+
}
|
| 1164 |
+
function tokensBPEArr(seq) {
|
| 1165 |
+
const out = []; let p = 0;
|
| 1166 |
+
for (const t of bpeTokens(seq)) {
|
| 1167 |
+
out.push({ text: t, startPos: p, endPos: p + t.length, tail: false });
|
| 1168 |
+
p += t.length;
|
| 1169 |
+
}
|
| 1170 |
+
return out;
|
| 1171 |
+
}
|
| 1172 |
+
function tokensKmer(seq, k = 6) {
|
| 1173 |
+
const out = []; let p = 0;
|
| 1174 |
+
while (p + k <= seq.length) {
|
| 1175 |
+
out.push({ text: seq.slice(p, p + k), startPos: p, endPos: p + k, tail: false });
|
| 1176 |
+
p += k;
|
| 1177 |
+
}
|
| 1178 |
+
if (p < seq.length) {
|
| 1179 |
+
out.push({ text: seq.slice(p), startPos: p, endPos: seq.length, tail: true });
|
| 1180 |
+
}
|
| 1181 |
+
return out;
|
| 1182 |
+
}
|
| 1183 |
+
|
| 1184 |
+
const SCHEMES = [
|
| 1185 |
+
{ id: 'base', el: document.getElementById('w1-base'), tokens: tokensBase, countEl: document.getElementById('w1-base-count'), ratioEl: document.getElementById('w1-base-ratio') },
|
| 1186 |
+
{ id: 'bpe', el: document.getElementById('w1-bpe'), tokens: tokensBPEArr, countEl: document.getElementById('w1-bpe-count'), ratioEl: document.getElementById('w1-bpe-ratio') },
|
| 1187 |
+
{ id: 'kmer', el: document.getElementById('w1-kmer'), tokens: tokensKmer, countEl: document.getElementById('w1-kmer-count'), ratioEl: document.getElementById('w1-kmer-ratio') },
|
| 1188 |
+
];
|
| 1189 |
+
|
| 1190 |
+
const seqInput = document.getElementById('w1-seq');
|
| 1191 |
+
const lenEl = document.getElementById('w1-len');
|
| 1192 |
+
const bpEl = document.getElementById('w1-bp');
|
| 1193 |
+
const sourceEl = document.getElementById('w1-source');
|
| 1194 |
+
const playBtn = document.getElementById('w1-play');
|
| 1195 |
+
let rafId = null;
|
| 1196 |
+
|
| 1197 |
+
function colored(s) {
|
| 1198 |
+
return Array.from(s).map((c) => 'ACGT'.includes(c)
|
| 1199 |
+
? '<span class="b-' + c + '">' + c + '</span>'
|
| 1200 |
+
: c).join('');
|
| 1201 |
+
}
|
| 1202 |
+
function tokenHTML(text) {
|
| 1203 |
+
return '<span class="br"><</span>' + colored(text) + '<span class="br">></span>';
|
| 1204 |
+
}
|
| 1205 |
+
function ratio(seqLen, n) {
|
| 1206 |
+
if (!n) return '−';
|
| 1207 |
+
const r = seqLen / n;
|
| 1208 |
+
return (r >= 10 ? r.toFixed(0) : r.toFixed(1));
|
| 1209 |
+
}
|
| 1210 |
+
|
| 1211 |
+
function countLabel(sc, seqLen, tks) {
|
| 1212 |
+
return (sc.id === 'kmer' && seqLen % 6 !== 0)
|
| 1213 |
+
? Math.floor(seqLen / 6) + '+1'
|
| 1214 |
+
: String(tks.length);
|
| 1215 |
+
}
|
| 1216 |
+
|
| 1217 |
+
// Build the source strip; render each scheme's tokens statically (resting
|
| 1218 |
+
// state) and set the final counts. play() then clears + re-animates.
|
| 1219 |
+
function rebuild() {
|
| 1220 |
+
if (rafId) { cancelAnimationFrame(rafId); rafId = null; }
|
| 1221 |
+
const seq = cleanDNA(seqInput.value);
|
| 1222 |
+
lenEl.textContent = seq.length + ' bp';
|
| 1223 |
+
bpEl.textContent = seq.length;
|
| 1224 |
+
|
| 1225 |
+
sourceEl.innerHTML = '';
|
| 1226 |
+
for (let i = 0; i < seq.length; i++) {
|
| 1227 |
+
const sp = document.createElement('span');
|
| 1228 |
+
sp.className = 'tk-base ' + seq[i];
|
| 1229 |
+
sp.dataset.pos = i;
|
| 1230 |
+
sp.textContent = seq[i];
|
| 1231 |
+
sourceEl.appendChild(sp);
|
| 1232 |
+
}
|
| 1233 |
+
|
| 1234 |
+
for (const sc of SCHEMES) {
|
| 1235 |
+
sc.el.innerHTML = '';
|
| 1236 |
+
const tks = sc.tokens(seq);
|
| 1237 |
+
for (const tk of tks) {
|
| 1238 |
+
const el = document.createElement('span');
|
| 1239 |
+
el.className = 'tk-token dropped' + (tk.tail ? ' tail' : '');
|
| 1240 |
+
el.innerHTML = tokenHTML(tk.text);
|
| 1241 |
+
sc.el.appendChild(el);
|
| 1242 |
+
}
|
| 1243 |
+
sc.countEl.textContent = countLabel(sc, seq.length, tks);
|
| 1244 |
+
sc.ratioEl.textContent = ratio(seq.length, tks.length);
|
| 1245 |
+
}
|
| 1246 |
+
}
|
| 1247 |
+
|
| 1248 |
+
// FLIP-style emit: place the token at its final spot in the scheme strip,
|
| 1249 |
+
// then apply a transform that moves it back over the source chips and
|
| 1250 |
+
// transition that transform to identity so it visually flies into place.
|
| 1251 |
+
function emitToken(scheme, tk, sourceChips) {
|
| 1252 |
+
const el = document.createElement('span');
|
| 1253 |
+
el.className = 'tk-token' + (tk.tail ? ' tail' : '');
|
| 1254 |
+
el.innerHTML = tokenHTML(tk.text);
|
| 1255 |
+
scheme.el.appendChild(el);
|
| 1256 |
+
|
| 1257 |
+
// Measure destination (the natural position after appending)
|
| 1258 |
+
const dRect = el.getBoundingClientRect();
|
| 1259 |
+
const destCx = (dRect.left + dRect.right) / 2;
|
| 1260 |
+
const destCy = (dRect.top + dRect.bottom) / 2;
|
| 1261 |
+
|
| 1262 |
+
// Measure source span (bounding box of contributing source chips)
|
| 1263 |
+
const first = sourceChips[tk.startPos];
|
| 1264 |
+
const last = sourceChips[tk.endPos - 1];
|
| 1265 |
+
if (!first || !last) { el.classList.add('dropped'); return; }
|
| 1266 |
+
const fR = first.getBoundingClientRect();
|
| 1267 |
+
const lR = last.getBoundingClientRect();
|
| 1268 |
+
const srcCx = (Math.min(fR.left, lR.left) + Math.max(fR.right, lR.right)) / 2;
|
| 1269 |
+
const srcCy = (Math.min(fR.top, lR.top) + Math.max(fR.bottom, lR.bottom)) / 2;
|
| 1270 |
+
|
| 1271 |
+
const dx = srcCx - destCx;
|
| 1272 |
+
const dy = srcCy - destCy;
|
| 1273 |
+
|
| 1274 |
+
// No transition for the snap-back; then add .dropped on next frame
|
| 1275 |
+
// so the transition kicks in for the journey back to identity.
|
| 1276 |
+
el.style.transform = 'translate(' + dx + 'px, ' + dy + 'px) scale(0.92)';
|
| 1277 |
+
requestAnimationFrame(() => {
|
| 1278 |
+
el.classList.add('dropped');
|
| 1279 |
+
el.style.transform = '';
|
| 1280 |
+
});
|
| 1281 |
+
}
|
| 1282 |
+
|
| 1283 |
+
function play() {
|
| 1284 |
+
if (rafId) cancelAnimationFrame(rafId);
|
| 1285 |
+
const seq = cleanDNA(seqInput.value);
|
| 1286 |
+
if (!seq) return;
|
| 1287 |
+
|
| 1288 |
+
// Reset: clear scheme strips, zero the counters, un-consume the source.
|
| 1289 |
+
for (const sc of SCHEMES) {
|
| 1290 |
+
sc.el.innerHTML = '';
|
| 1291 |
+
sc.countEl.textContent = '0';
|
| 1292 |
+
sc.ratioEl.textContent = '—';
|
| 1293 |
+
}
|
| 1294 |
+
const sourceChips = Array.from(sourceEl.querySelectorAll('.tk-base'));
|
| 1295 |
+
sourceChips.forEach((c) => c.classList.remove('consumed'));
|
| 1296 |
+
|
| 1297 |
+
// Pre-compute the token list for each scheme
|
| 1298 |
+
const schemeTokens = {};
|
| 1299 |
+
for (const sc of SCHEMES) schemeTokens[sc.id] = sc.tokens(seq);
|
| 1300 |
+
|
| 1301 |
+
const emitted = { base: 0, bpe: 0, kmer: 0 };
|
| 1302 |
+
const emittedBp = { base: 0, bpe: 0, kmer: 0 };
|
| 1303 |
+
const duration = Math.max(1800, seq.length * 95);
|
| 1304 |
+
const start = performance.now();
|
| 1305 |
+
|
| 1306 |
+
function step(now) {
|
| 1307 |
+
const t = Math.min(1, (now - start) / duration);
|
| 1308 |
+
const cursor = t * seq.length;
|
| 1309 |
+
|
| 1310 |
+
// Dim source chips up to cursor
|
| 1311 |
+
for (let i = 0; i < sourceChips.length; i++) {
|
| 1312 |
+
if (i < cursor && !sourceChips[i].classList.contains('consumed')) {
|
| 1313 |
+
sourceChips[i].classList.add('consumed');
|
| 1314 |
+
}
|
| 1315 |
+
}
|
| 1316 |
+
|
| 1317 |
+
// Emit any token whose end position has been reached, counting in real time
|
| 1318 |
+
for (const sc of SCHEMES) {
|
| 1319 |
+
const tks = schemeTokens[sc.id];
|
| 1320 |
+
while (emitted[sc.id] < tks.length && tks[emitted[sc.id]].endPos <= cursor) {
|
| 1321 |
+
const tk = tks[emitted[sc.id]];
|
| 1322 |
+
emitToken(sc, tk, sourceChips);
|
| 1323 |
+
emitted[sc.id]++;
|
| 1324 |
+
emittedBp[sc.id] = tk.endPos;
|
| 1325 |
+
sc.countEl.textContent = String(emitted[sc.id]);
|
| 1326 |
+
sc.ratioEl.textContent = ratio(emittedBp[sc.id], emitted[sc.id]);
|
| 1327 |
+
}
|
| 1328 |
+
}
|
| 1329 |
+
|
| 1330 |
+
if (t < 1) {
|
| 1331 |
+
rafId = requestAnimationFrame(step);
|
| 1332 |
+
} else {
|
| 1333 |
+
// Settle on the exact final figures
|
| 1334 |
+
for (const sc of SCHEMES) {
|
| 1335 |
+
const tks = schemeTokens[sc.id];
|
| 1336 |
+
sc.countEl.textContent = countLabel(sc, seq.length, tks);
|
| 1337 |
+
sc.ratioEl.textContent = ratio(seq.length, tks.length);
|
| 1338 |
+
}
|
| 1339 |
+
rafId = null;
|
| 1340 |
+
}
|
| 1341 |
+
}
|
| 1342 |
+
rafId = requestAnimationFrame(step);
|
| 1343 |
+
}
|
| 1344 |
+
|
| 1345 |
+
seqInput.addEventListener('input', rebuild);
|
| 1346 |
+
playBtn.addEventListener('click', play);
|
| 1347 |
+
|
| 1348 |
+
rebuild();
|
| 1349 |
+
|
| 1350 |
+
// Auto-play once when the widget scrolls into view
|
| 1351 |
+
if ('IntersectionObserver' in window) {
|
| 1352 |
+
const io = new IntersectionObserver((entries) => {
|
| 1353 |
+
for (const e of entries) {
|
| 1354 |
+
if (e.isIntersecting) { io.disconnect(); setTimeout(play, 300); break; }
|
| 1355 |
+
}
|
| 1356 |
+
}, { threshold: 0.3 });
|
| 1357 |
+
io.observe(document.getElementById('w1'));
|
| 1358 |
+
} else {
|
| 1359 |
+
setTimeout(play, 600);
|
| 1360 |
+
}
|
| 1361 |
+
})();
|
| 1362 |
+
</script>
|
| 1363 |
+
</body>
|
| 1364 |
</html>
|
style.css
DELETED
|
@@ -1,28 +0,0 @@
|
|
| 1 |
-
body {
|
| 2 |
-
padding: 2rem;
|
| 3 |
-
font-family: -apple-system, BlinkMacSystemFont, "Arial", sans-serif;
|
| 4 |
-
}
|
| 5 |
-
|
| 6 |
-
h1 {
|
| 7 |
-
font-size: 16px;
|
| 8 |
-
margin-top: 0;
|
| 9 |
-
}
|
| 10 |
-
|
| 11 |
-
p {
|
| 12 |
-
color: rgb(107, 114, 128);
|
| 13 |
-
font-size: 15px;
|
| 14 |
-
margin-bottom: 10px;
|
| 15 |
-
margin-top: 5px;
|
| 16 |
-
}
|
| 17 |
-
|
| 18 |
-
.card {
|
| 19 |
-
max-width: 620px;
|
| 20 |
-
margin: 0 auto;
|
| 21 |
-
padding: 16px;
|
| 22 |
-
border: 1px solid lightgray;
|
| 23 |
-
border-radius: 16px;
|
| 24 |
-
}
|
| 25 |
-
|
| 26 |
-
.card p:last-child {
|
| 27 |
-
margin-bottom: 0;
|
| 28 |
-
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|