Descartes commited on
Commit
b0ee5cc
·
verified ·
1 Parent(s): dd5ae9f

Rename model to ShenZhen (神珍)

Browse files
Files changed (1) hide show
  1. README.md +16 -16
README.md CHANGED
@@ -25,13 +25,13 @@ extra_gated_description: >-
25
 
26
  <div align="center">
27
 
28
- [🤗 Model](https://huggingface.co/sais-org/Polaris_Pro) &nbsp;•&nbsp; [💻 GitHub](https://github.com/Shanghai-Academy-of-AI-For-Science/Polaris-Pro) &nbsp;•&nbsp; [📜 Technical Report (coming soon)](#) &nbsp;•&nbsp; [⚖️ License: Apache-2.0 + SAM License](https://github.com/Shanghai-Academy-of-AI-For-Science/Polaris-Pro/blob/main/LICENSE)
29
 
30
  </div>
31
 
32
- # Polaris-Pro
33
 
34
- **Polaris-Pro is a unified scientific multimodal foundation model** that
35
  supports scientific **understanding and generation** across Earth science,
36
  proteins, RNA, DNA, and small molecules within a single **8B** model. Native
37
  scientific encoders/decoders wrap a shared **Qwen3-VL-8B-Instruct** backbone, so
@@ -67,13 +67,13 @@ space — natural language in and out, no per-task fine-tuning.
67
 
68
  ## Benchmarks
69
 
70
- **Polaris-Pro** (**8B**) vs **Biology-Instructions** (Llama-3.1-**8B**, text-token,
71
  no scientific encoders) and **Intern-S1-Pro** (**~1T** MoE scientific model).
72
  **Bold** = best; <u>underline</u> = second-best.
73
 
74
  ### Biological sequence understanding
75
 
76
- | Task | Metric | Polaris-Pro (8B) | Biology-Instructions (8B) | Intern-S1-Pro (~1T) |
77
  |:-----|:------:|:----------------:|:-------------------------:|:-------------------:|
78
  | DNA · Epigenetic marks (EMP) | MCC | **71.99** | 3.64 | <u>14.02</u> |
79
  | DNA · Promoter det. 300bp (PD300) | MCC | **91.17** | 58.18 | <u>82.65</u> |
@@ -91,11 +91,11 @@ no scientific encoders) and **Intern-S1-Pro** (**~1T** MoE scientific model).
91
  | Cross-modal · AAN (antibody–antigen) | MCC | <u>42.96</u> | 1.06 | **44.76** |
92
  | Cross-modal · EPI (enhancer–promoter) | MCC | <u>-0.03</u> | **3.37** | -1.30 |
93
 
94
- <sub>Aggregate over 20 biological-understanding benchmarks: Polaris-Pro matches or beats the ~1T Intern-S1-Pro on 10/20 and the same-scale 8B text-token baseline on 16/20.</sub>
95
 
96
  ### Molecule understanding (SMolInstruct)
97
 
98
- | Task | Metric | Polaris-Pro (8B) | LlaSMol |
99
  |:-----|:------:|:----------------:|:-------:|
100
  | BBBP | Acc | **96.95** | 74.60 |
101
  | HIV | Acc | **97.00** | 96.70 |
@@ -106,20 +106,20 @@ no scientific encoders) and **Intern-S1-Pro** (**~1T** MoE scientific model).
106
 
107
  ### Earth-science forecasting — vs ECMWF HRES (day-10, global ERA5 0.25°)
108
 
109
- | Variable | Metric | Polaris-Pro (8B) | ECMWF HRES (NWP) |
110
  |:---------|:------:|:----------------:|:----------------:|
111
  | Z500 | RMSE ↓ | **≈740** | ≈810 |
112
  | T2M | RMSE ↓ (K) | **≈2.65** | ≈2.90 |
113
  | MSL | RMSE ↓ (Pa) | **≈680** | ≈745 |
114
 
115
- <sub>Polaris-Pro tracks or beats the operational physics-based HRES system, with the advantage growing at longer lead times.</sub>
116
 
117
  ### Medical-image segmentation
118
 
119
  Mean Dice (%) on the BiomedParse test splits, 102,855 image–prompt pairs across
120
  nine imaging modalities, versus six modality-native segmentation specialists.
121
 
122
- | Modality | # Samples | Polaris-Pro | BiomedParse | MedSAM | SAM | SAM3 | DINO+MedSAM | DINO+SAM |
123
  |:---------|----------:|:-----------:|:-----------:|:------:|:---:|:----:|:-----------:|:--------:|
124
  | **All** | 102,855 | **91.20** | <u>90.73</u> | 83.55 | 71.29 | 35.40 | 15.37 | 15.10 |
125
  | CT | 45,306 | **93.36** | <u>92.25</u> | 83.87 | 74.10 | 28.93 | 9.59 | 10.34 |
@@ -139,9 +139,9 @@ nine imaging modalities, versus six modality-native segmentation specialists.
139
  Runs via the accompanying code repository (custom multimodal architecture).
140
 
141
  ```bash
142
- git clone https://github.com/Shanghai-Academy-of-AI-For-Science/Polaris-Pro && cd Polaris-Pro
143
  pip install -r requirements.txt # Python 3.10; transformers==5.0.0
144
- hf download sais-org/Polaris_Pro --local-dir ./model
145
 
146
  export PYTHONPATH=$PWD/code
147
  python code/inference.py --model_path model --greedy --max_new_tokens 64 \
@@ -160,7 +160,7 @@ Each task has a specific `--system` prompt that fixes the output format; see
160
 
161
  ## License
162
 
163
- **Composite license.** Polaris-Pro's own components — the code, and all weights
164
  except the SAM 3 branch — are **Apache-2.0**, built on Qwen3-VL (Apache-2.0) and
165
  including merged ESM-2 (MIT) and Polaris/Suiren-derived encoders.
166
 
@@ -173,10 +173,10 @@ See `THIRD_PARTY_LICENSES.md` / `NOTICE` for the full third-party breakdown.
173
  ## Citation
174
 
175
  ```bibtex
176
- @misc{polarispro2026,
177
- title = {Polaris-Pro: A Unified Scientific Multimodal Foundation Model},
178
  author = {Hesen Chen and Xinyu Su and Xiaomeng Yang and Yuetan Lin and Zixiong Yang and Zhiyu Tan and Hao Li},
179
  year = {2026},
180
- note = {https://huggingface.co/sais-org/Polaris_Pro}
181
  }
182
  ```
 
25
 
26
  <div align="center">
27
 
28
+ [🤗 Model](https://huggingface.co/sais-org/ShenZhen) &nbsp;•&nbsp; [💻 GitHub](https://github.com/Shanghai-Academy-of-AI-For-Science/ShenZhen) &nbsp;•&nbsp; [📜 Technical Report (coming soon)](#) &nbsp;•&nbsp; [⚖️ License: Apache-2.0 + SAM License](https://github.com/Shanghai-Academy-of-AI-For-Science/ShenZhen/blob/main/LICENSE)
29
 
30
  </div>
31
 
32
+ # 神珍 (ShenZhen)
33
 
34
+ **神珍 is a unified scientific multimodal foundation model** that
35
  supports scientific **understanding and generation** across Earth science,
36
  proteins, RNA, DNA, and small molecules within a single **8B** model. Native
37
  scientific encoders/decoders wrap a shared **Qwen3-VL-8B-Instruct** backbone, so
 
67
 
68
  ## Benchmarks
69
 
70
+ **神珍** (**8B**) vs **Biology-Instructions** (Llama-3.1-**8B**, text-token,
71
  no scientific encoders) and **Intern-S1-Pro** (**~1T** MoE scientific model).
72
  **Bold** = best; <u>underline</u> = second-best.
73
 
74
  ### Biological sequence understanding
75
 
76
+ | Task | Metric | 神珍 (8B) | Biology-Instructions (8B) | Intern-S1-Pro (~1T) |
77
  |:-----|:------:|:----------------:|:-------------------------:|:-------------------:|
78
  | DNA · Epigenetic marks (EMP) | MCC | **71.99** | 3.64 | <u>14.02</u> |
79
  | DNA · Promoter det. 300bp (PD300) | MCC | **91.17** | 58.18 | <u>82.65</u> |
 
91
  | Cross-modal · AAN (antibody–antigen) | MCC | <u>42.96</u> | 1.06 | **44.76** |
92
  | Cross-modal · EPI (enhancer–promoter) | MCC | <u>-0.03</u> | **3.37** | -1.30 |
93
 
94
+ <sub>Aggregate over 20 biological-understanding benchmarks: 神珍 matches or beats the ~1T Intern-S1-Pro on 10/20 and the same-scale 8B text-token baseline on 16/20.</sub>
95
 
96
  ### Molecule understanding (SMolInstruct)
97
 
98
+ | Task | Metric | 神珍 (8B) | LlaSMol |
99
  |:-----|:------:|:----------------:|:-------:|
100
  | BBBP | Acc | **96.95** | 74.60 |
101
  | HIV | Acc | **97.00** | 96.70 |
 
106
 
107
  ### Earth-science forecasting — vs ECMWF HRES (day-10, global ERA5 0.25°)
108
 
109
+ | Variable | Metric | 神珍 (8B) | ECMWF HRES (NWP) |
110
  |:---------|:------:|:----------------:|:----------------:|
111
  | Z500 | RMSE ↓ | **≈740** | ≈810 |
112
  | T2M | RMSE ↓ (K) | **≈2.65** | ≈2.90 |
113
  | MSL | RMSE ↓ (Pa) | **≈680** | ≈745 |
114
 
115
+ <sub>神珍 tracks or beats the operational physics-based HRES system, with the advantage growing at longer lead times.</sub>
116
 
117
  ### Medical-image segmentation
118
 
119
  Mean Dice (%) on the BiomedParse test splits, 102,855 image–prompt pairs across
120
  nine imaging modalities, versus six modality-native segmentation specialists.
121
 
122
+ | Modality | # Samples | 神珍 | BiomedParse | MedSAM | SAM | SAM3 | DINO+MedSAM | DINO+SAM |
123
  |:---------|----------:|:-----------:|:-----------:|:------:|:---:|:----:|:-----------:|:--------:|
124
  | **All** | 102,855 | **91.20** | <u>90.73</u> | 83.55 | 71.29 | 35.40 | 15.37 | 15.10 |
125
  | CT | 45,306 | **93.36** | <u>92.25</u> | 83.87 | 74.10 | 28.93 | 9.59 | 10.34 |
 
139
  Runs via the accompanying code repository (custom multimodal architecture).
140
 
141
  ```bash
142
+ git clone https://github.com/Shanghai-Academy-of-AI-For-Science/ShenZhen && cd ShenZhen
143
  pip install -r requirements.txt # Python 3.10; transformers==5.0.0
144
+ hf download sais-org/ShenZhen --local-dir ./model
145
 
146
  export PYTHONPATH=$PWD/code
147
  python code/inference.py --model_path model --greedy --max_new_tokens 64 \
 
160
 
161
  ## License
162
 
163
+ **Composite license.** 神珍's own components — the code, and all weights
164
  except the SAM 3 branch — are **Apache-2.0**, built on Qwen3-VL (Apache-2.0) and
165
  including merged ESM-2 (MIT) and Polaris/Suiren-derived encoders.
166
 
 
173
  ## Citation
174
 
175
  ```bibtex
176
+ @misc{shenzhen2026,
177
+ title = {ShenZhen (神珍): A Unified Scientific Multimodal Foundation Model},
178
  author = {Hesen Chen and Xinyu Su and Xiaomeng Yang and Yuetan Lin and Zixiong Yang and Zhiyu Tan and Hao Li},
179
  year = {2026},
180
+ note = {https://huggingface.co/sais-org/ShenZhen}
181
  }
182
  ```