Sample_Finetuning_SIIMACR/I2_segmentation/utils.py

import numpy as np
import io
import os
import time
from collections import defaultdict, deque
import datetime

import torch
import torch.distributed as dist
import torch.nn.functional as F
import torch.nn as nn


class DiceBCELoss(nn.Module):
    def __init__(self, weight=None, size_average=True):
        super(DiceBCELoss, self).__init__()

    def forward(self, inputs, targets, smooth=1):

        # comment out if your model contains a sigmoid or equivalent activation layer
        inputs = F.sigmoid(inputs)

        # flatten label and prediction tensors
        inputs = inputs.view(-1)
        targets = targets.view(-1)

        intersection = (inputs * targets).sum()
        dice_loss = 1 - (2.0 * intersection + smooth) / (
            inputs.sum() + targets.sum() + smooth
        )
        BCE = F.binary_cross_entropy(inputs, targets, reduction="mean")
        Dice_BCE = BCE + dice_loss

        return Dice_BCE


class SmoothedValue(object):
    """Track a series of values and provide access to smoothed values over a
    window or the global series average.
    """

    def __init__(self, window_size=20, fmt=None):
        if fmt is None:
            fmt = "{median:.4f} ({global_avg:.4f})"
        self.deque = deque(maxlen=window_size)
        self.total = 0.0
        self.count = 0
        self.fmt = fmt

    def update(self, value, n=1):
        self.deque.append(value)
        self.count += n
        self.total += value * n

    def synchronize_between_processes(self):
        """
        Warning: does not synchronize the deque!
        """
        if not is_dist_avail_and_initialized():
            return
        t = torch.tensor([self.count, self.total], dtype=torch.float64, device="cuda")
        dist.barrier()
        dist.all_reduce(t)
        t = t.tolist()
        self.count = int(t[0])
        self.total = t[1]

    @property
    def median(self):
        d = torch.tensor(list(self.deque))
        return d.median().item()

    @property
    def avg(self):
        d = torch.tensor(list(self.deque), dtype=torch.float32)
        return d.mean().item()

    @property
    def global_avg(self):
        if self.count == 0:
            return self.total
        else:
            return self.total / self.count

    @property
    def max(self):
        return max(self.deque)

    @property
    def value(self):
        return self.deque[-1]

    def __str__(self):
        return self.fmt.format(
            median=self.median,
            avg=self.avg,
            global_avg=self.global_avg,
            max=self.max,
            value=self.value,
        )


class MetricLogger(object):
    def __init__(self, delimiter="\t"):
        self.meters = defaultdict(SmoothedValue)
        self.delimiter = delimiter

    def update(self, **kwargs):
        for k, v in kwargs.items():
            if isinstance(v, torch.Tensor):
                v = v.item()
            assert isinstance(v, (float, int))
            self.meters[k].update(v)

    def __getattr__(self, attr):
        if attr in self.meters:
            return self.meters[attr]
        if attr in self.__dict__:
            return self.__dict__[attr]
        raise AttributeError(
            "'{}' object has no attribute '{}'".format(type(self).__name__, attr)
        )

    def __str__(self):
        loss_str = []
        for name, meter in self.meters.items():
            loss_str.append("{}: {}".format(name, str(meter)))
        return self.delimiter.join(loss_str)

    def global_avg(self):
        loss_str = []
        for name, meter in self.meters.items():
            loss_str.append("{}: {:.4f}".format(name, meter.global_avg))
        return self.delimiter.join(loss_str)

    def synchronize_between_processes(self):
        for meter in self.meters.values():
            meter.synchronize_between_processes()

    def add_meter(self, name, meter):
        self.meters[name] = meter

    def log_every(self, iterable, print_freq, header=None):
        i = 0
        if not header:
            header = ""
        start_time = time.time()
        end = time.time()
        iter_time = SmoothedValue(fmt="{avg:.4f}")
        data_time = SmoothedValue(fmt="{avg:.4f}")
        space_fmt = ":" + str(len(str(len(iterable)))) + "d"
        log_msg = [
            header,
            "[{0" + space_fmt + "}/{1}]",
            "eta: {eta}",
            "{meters}",
            "time: {time}",
            "data: {data}",
        ]
        if torch.cuda.is_available():
            log_msg.append("max mem: {memory:.0f}")
        log_msg = self.delimiter.join(log_msg)
        MB = 1024.0 * 1024.0
        for obj in iterable:
            data_time.update(time.time() - end)
            yield obj
            iter_time.update(time.time() - end)
            if i % print_freq == 0 or i == len(iterable) - 1:
                eta_seconds = iter_time.global_avg * (len(iterable) - i)
                eta_string = str(datetime.timedelta(seconds=int(eta_seconds)))
                if torch.cuda.is_available():
                    print(
                        log_msg.format(
                            i,
                            len(iterable),
                            eta=eta_string,
                            meters=str(self),
                            time=str(iter_time),
                            data=str(data_time),
                            memory=torch.cuda.max_memory_allocated() / MB,
                        )
                    )
                else:
                    print(
                        log_msg.format(
                            i,
                            len(iterable),
                            eta=eta_string,
                            meters=str(self),
                            time=str(iter_time),
                            data=str(data_time),
                        )
                    )
            i += 1
            end = time.time()
        total_time = time.time() - start_time
        total_time_str = str(datetime.timedelta(seconds=int(total_time)))
        print(
            "{} Total time: {} ({:.4f} s / it)".format(
                header, total_time_str, total_time / len(iterable)
            )
        )


class AttrDict(dict):
    def __init__(self, *args, **kwargs):
        super(AttrDict, self).__init__(*args, **kwargs)
        self.__dict__ = self


def compute_acc(logits, label, reduction="mean"):
    ret = (torch.argmax(logits, dim=1) == label).float()
    if reduction == "none":
        return ret.detach()
    elif reduction == "mean":
        return ret.mean().item()


def compute_n_params(model, return_str=True):
    tot = 0
    for p in model.parameters():
        w = 1
        for x in p.shape:
            w *= x
        tot += w
    if return_str:
        if tot >= 1e6:
            return "{:.1f}M".format(tot / 1e6)
        else:
            return "{:.1f}K".format(tot / 1e3)
    else:
        return tot


def setup_for_distributed(is_master):
    """
    This function disables printing when not in master process
    """
    import builtins as __builtin__

    builtin_print = __builtin__.print

    def print(*args, **kwargs):
        force = kwargs.pop("force", False)
        if is_master or force:
            builtin_print(*args, **kwargs)

    __builtin__.print = print


def is_dist_avail_and_initialized():
    if not dist.is_available():
        return False
    if not dist.is_initialized():
        return False
    return True


def get_world_size():
    if not is_dist_avail_and_initialized():
        return 1
    return dist.get_world_size()


def get_rank():
    if not is_dist_avail_and_initialized():
        return 0
    return dist.get_rank()


def is_main_process():
    return get_rank() == 0


def save_on_master(*args, **kwargs):
    if is_main_process():
        torch.save(*args, **kwargs)


def init_distributed_mode(args):
    # os.environ['CUDA_VISIBLE_DEVICES'] = '0,1'
    # args.local_rank = os.environ['LOCAL_RANK']
    if "RANK" in os.environ and "WORLD_SIZE" in os.environ:
        args.rank = int(os.environ["RANK"])
        args.world_size = int(os.environ["WORLD_SIZE"])
        args.local_rank = int(os.environ["LOCAL_RANK"])
    elif "SLURM_PROCID" in os.environ:
        args.rank = int(os.environ["SLURM_PROCID"])
        args.local_rank = args.rank % torch.cuda.device_count()
    else:
        print("Not using distributed mode")
        args.distributed = False
        return

    args.distributed = True

    torch.cuda.set_device(args.local_rank)
    args.dist_backend = "nccl"
    print(
        "| distributed init (rank {}): {}".format(args.rank, args.dist_url), flush=True
    )
    torch.distributed.init_process_group(
        backend=args.dist_backend,
        init_method=args.dist_url,
        world_size=args.world_size,
        rank=args.rank,
    )
    torch.distributed.barrier()
    setup_for_distributed(args.rank == 0)