Sync bitage
Browse files- README.md +38 -0
- bitage.pt +3 -0
- config.json +35 -0
README.md
ADDED
|
@@ -0,0 +1,38 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: bsd-3-clause
|
| 3 |
+
library_name: pyaging
|
| 4 |
+
tags:
|
| 5 |
+
- pyaging
|
| 6 |
+
- aging-clock
|
| 7 |
+
- biology
|
| 8 |
+
- transcriptomics
|
| 9 |
+
---
|
| 10 |
+
|
| 11 |
+
# bitage
|
| 12 |
+
|
| 13 |
+
Binarized whole-organism C. elegans RNA-seq clock that estimates temporally rescaled biological age; the released linear predictor sums coefficients for genes binarized on plus a 103.55-hour intercept.
|
| 14 |
+
|
| 15 |
+
| | |
|
| 16 |
+
|---|---|
|
| 17 |
+
| **Predicts** | biological age |
|
| 18 |
+
| **Species** | Caenorhabditis elegans |
|
| 19 |
+
| **Tissue** | whole organism |
|
| 20 |
+
| **Data type** | transcriptomics |
|
| 21 |
+
| **Model type** | elastic net regression |
|
| 22 |
+
| **Year** | 2021 |
|
| 23 |
+
|
| 24 |
+
## Use with pyaging
|
| 25 |
+
|
| 26 |
+
```python
|
| 27 |
+
import pyaging as pya
|
| 28 |
+
|
| 29 |
+
pya.pred.predict_age(adata, ["bitage"])
|
| 30 |
+
```
|
| 31 |
+
|
| 32 |
+
Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.io).
|
| 33 |
+
|
| 34 |
+
## Citation
|
| 35 |
+
|
| 36 |
+
Meyer, David H., and Björn Schumacher. "BiT age: A transcriptome-based aging clock near the theoretical limit of accuracy." Aging Cell 20 (2021): e13320.
|
| 37 |
+
|
| 38 |
+
https://doi.org/10.1111/acel.13320
|
bitage.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ab300fb60b19e7fc8854f25ef357fd72d94816c947ce89b25c9b6cbd6dccb54a
|
| 3 |
+
size 22821
|
config.json
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"approved_by_author": "\u2705",
|
| 3 |
+
"citation": "Meyer, David H., and Bj\u00f6rn Schumacher. \"BiT age: A transcriptome-based aging clock near the theoretical limit of accuracy.\" Aging Cell 20 (2021): e13320.",
|
| 4 |
+
"citations": 173,
|
| 5 |
+
"citations_date": "2026-07-05",
|
| 6 |
+
"clock_name": "bitage",
|
| 7 |
+
"data_type": "transcriptomics",
|
| 8 |
+
"doi": "https://doi.org/10.1111/acel.13320",
|
| 9 |
+
"journal": "Aging Cell",
|
| 10 |
+
"last_author": "Bj\u00f6rn Schumacher",
|
| 11 |
+
"model_type": "elastic net regression",
|
| 12 |
+
"n_features": 576,
|
| 13 |
+
"notes": "Binarized whole-organism C. elegans RNA-seq clock that estimates temporally rescaled biological age; the released linear predictor sums coefficients for genes binarized on plus a 103.55-hour intercept.",
|
| 14 |
+
"platform": [
|
| 15 |
+
"RNA-seq"
|
| 16 |
+
],
|
| 17 |
+
"population": "Caenorhabditis elegans",
|
| 18 |
+
"predicts": [
|
| 19 |
+
"biological age"
|
| 20 |
+
],
|
| 21 |
+
"preprocess": "binarize",
|
| 22 |
+
"research_only": null,
|
| 23 |
+
"species": "Caenorhabditis elegans",
|
| 24 |
+
"tissue": [
|
| 25 |
+
"whole organism"
|
| 26 |
+
],
|
| 27 |
+
"training_target": [
|
| 28 |
+
"biological age"
|
| 29 |
+
],
|
| 30 |
+
"unit": [
|
| 31 |
+
"hours"
|
| 32 |
+
],
|
| 33 |
+
"version": "v0.3.0",
|
| 34 |
+
"year": 2021
|
| 35 |
+
}
|