lucascamillomd commited on
Commit
352bed2
·
verified ·
1 Parent(s): 5faf83d

Sync abec

Browse files
Files changed (3) hide show
  1. README.md +38 -0
  2. abec.pt +3 -0
  3. config.json +34 -0
README.md ADDED
@@ -0,0 +1,38 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: bsd-3-clause
3
+ library_name: pyaging
4
+ tags:
5
+ - pyaging
6
+ - aging-clock
7
+ - biology
8
+ - dna-methylation
9
+ ---
10
+
11
+ # abec
12
+
13
+ Adult Blood-based EPIC Clock trained by elastic-net regression of chronological age on whole-blood EPIC methylation in 1,592 MoBa-START adults aged 19–59 years.
14
+
15
+ | | |
16
+ |---|---|
17
+ | **Predicts** | chronological age |
18
+ | **Species** | Homo sapiens |
19
+ | **Tissue** | whole blood |
20
+ | **Data type** | DNA methylation |
21
+ | **Model type** | elastic net regression |
22
+ | **Year** | 2020 |
23
+
24
+ ## Use with pyaging
25
+
26
+ ```python
27
+ import pyaging as pya
28
+
29
+ pya.pred.predict_age(adata, ["abec"])
30
+ ```
31
+
32
+ Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.io).
33
+
34
+ ## Citation
35
+
36
+ Lee, Yunsung, et al. "Blood-based epigenetic estimators of chronological age in human adults using DNA methylation data from the Illumina MethylationEPIC array." BMC genomics 21 (2020): 1-13.
37
+
38
+ https://doi.org/10.1186/s12864-020-07168-8
abec.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:28244f1ca18d035f7a2878e01cadcd042a331460f9843185a8dcd836c3f24a5d
3
+ size 51813
config.json ADDED
@@ -0,0 +1,34 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "approved_by_author": "\u231b",
3
+ "citation": "Lee, Yunsung, et al. \"Blood-based epigenetic estimators of chronological age in human adults using DNA methylation data from the Illumina MethylationEPIC array.\" BMC genomics 21 (2020): 1-13.",
4
+ "citations": 21,
5
+ "citations_date": "2026-07-05",
6
+ "clock_name": "abec",
7
+ "data_type": "DNA methylation",
8
+ "doi": "https://doi.org/10.1186/s12864-020-07168-8",
9
+ "journal": "BMC Genomics",
10
+ "last_author": "Jon Bohlin",
11
+ "model_type": "elastic net regression",
12
+ "n_features": 1695,
13
+ "notes": "Adult Blood-based EPIC Clock trained by elastic-net regression of chronological age on whole-blood EPIC methylation in 1,592 MoBa-START adults aged 19\u201359 years.",
14
+ "platform": [
15
+ "Illumina EPIC"
16
+ ],
17
+ "population": "adults",
18
+ "predicts": [
19
+ "chronological age"
20
+ ],
21
+ "research_only": null,
22
+ "species": "Homo sapiens",
23
+ "tissue": [
24
+ "whole blood"
25
+ ],
26
+ "training_target": [
27
+ "chronological age"
28
+ ],
29
+ "unit": [
30
+ "years"
31
+ ],
32
+ "version": "v0.3.0",
33
+ "year": 2020
34
+ }