evaluate.json

{
    "adam_lr": 0.001,
    "adam_wd": 0.0,
    "batch_size": 64,
    "chroms": [
        "chr8",
        "chr20"
    ],
    "controls": null,
    "device": "cuda",
    "dtype": "bfloat16",
    "early_stopping": 20,
    "exclusion_lists": [
        "https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"
    ],
    "expansion": 2,
    "in_window": 2114,
    "loci": [
        "train_peaks.fold_0.bed",
        "valid_peaks.fold_0.bed"
    ],
    "lw_lr": 0.001,
    "lw_momentum": 0.9,
    "lw_wd": 0.0,
    "max_epochs": 20,
    "max_jitter": 0,
    "model": "cherimoya.fold_0.torch",
    "muon_lr": 0.025,
    "muon_wd": 0.03,
    "n_filters": 128,
    "n_layers": 9,
    "n_warmup_epochs": 2,
    "name": "cherimoya.fold_0",
    "negative_ratio": 0.25,
    "negatives": [
        "train_nonpeaks.fold_0.bed",
        "valid_nonpeaks.fold_0.bed"
    ],
    "num_workers": 1,
    "out_window": 1000,
    "performance_filename": "cherimoya.fold_0.performance.tsv",
    "random_state": null,
    "residual_scale": 0.15,
    "reverse_complement": false,
    "reverse_complement_average": false,
    "sequences": "hg38.fa",
    "signals": [
        "ENCFF141BVL.bigWig"
    ],
    "skip": false,
    "summits": false,
    "training_chroms": [
        "chr2",
        "chr4",
        "chr5",
        "chr7",
        "chr9",
        "chr10",
        "chr11",
        "chr12",
        "chr13",
        "chr14",
        "chr15",
        "chr16",
        "chr17",
        "chr18",
        "chr19",
        "chr21",
        "chr22",
        "chrX",
        "chrY"
    ],
    "validation_chroms": [
        "chr8",
        "chr20"
    ],
    "verbose": true
}