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Mar 9

CyberLLM-FINDS 2025: Instruction-Tuned Fine-tuning of Domain-Specific LLMs with Retrieval-Augmented Generation and Graph Integration for MITRE Evaluation

Large Language Models (LLMs) such as Gemma-2B have shown strong performance in various natural language processing tasks. However, general-purpose models often lack the domain expertise required for cybersecurity applications. This work presents a methodology to fine-tune the Gemma-2B model into a domain-specific cybersecurity LLM. We detail the processes of dataset preparation, fine-tuning, and synthetic data generation, along with implications for real-world applications in threat detection, forensic investigation, and attack analysis. Experiments highlight challenges in prompt length distribution during domain-specific fine-tuning. Uneven prompt lengths limit the model's effective use of the context window, constraining local inference to 200-400 tokens despite hardware support for longer sequences. Chain-of-thought styled prompts, paired with quantized weights, yielded the best performance under these constraints. To address context limitations, we employed a hybrid strategy using cloud LLMs for synthetic data generation and local fine-tuning for deployment efficiency. To extend the evaluation, we introduce a Retrieval-Augmented Generation (RAG) pipeline and graph-based reasoning framework. This approach enables structured alignment with MITRE ATT&CK techniques through STIX-based threat intelligence, enhancing recall in multi-hop and long-context scenarios. Graph modules encode entity-neighborhood context and tactic chains, helping mitigate the constraints of short prompt windows. Results demonstrate improved model alignment with tactic, technique, and procedure (TTP) coverage, validating the utility of graph-augmented LLMs in cybersecurity threat intelligence applications.

  • 3 authors
·
Jan 11

Sketch-to-Layout: Sketch-Guided Multimodal Layout Generation

Graphic layout generation is a growing research area focusing on generating aesthetically pleasing layouts ranging from poster designs to documents. While recent research has explored ways to incorporate user constraints to guide the layout generation, these constraints often require complex specifications which reduce usability. We introduce an innovative approach exploiting user-provided sketches as intuitive constraints and we demonstrate empirically the effectiveness of this new guidance method, establishing the sketch-to-layout problem as a promising research direction, which is currently under-explored. To tackle the sketch-to-layout problem, we propose a multimodal transformer-based solution using the sketch and the content assets as inputs to produce high quality layouts. Since collecting sketch training data from human annotators to train our model is very costly, we introduce a novel and efficient method to synthetically generate training sketches at scale. We train and evaluate our model on three publicly available datasets: PubLayNet, DocLayNet and SlidesVQA, demonstrating that it outperforms state-of-the-art constraint-based methods, while offering a more intuitive design experience. In order to facilitate future sketch-to-layout research, we release O(200k) synthetically-generated sketches for the public datasets above. The datasets are available at https://github.com/google-deepmind/sketch_to_layout.

  • 12 authors
·
Oct 31, 2025

TEDDY: A Family Of Foundation Models For Understanding Single Cell Biology

Understanding the biological mechanism of disease is critical for medicine, and in particular drug discovery. AI-powered analysis of genome-scale biological data hold great potential in this regard. The increasing availability of single-cell RNA sequencing data has enabled the development of large foundation models for disease biology. However, existing foundation models either do not improve or only modestly improve over task-specific models in downstream applications. Here, we explored two avenues for improving the state-of-the-art. First, we scaled the pre-training dataset to 116 million cells, which is larger than those used by previous models. Second, we leveraged the availability of large-scale biological annotations as a form of supervision during pre-training. We trained the TEDDY family of models comprising six transformer-based state-of-the-art single-cell foundation models with 70 million, 160 million, and 400 million parameters. We vetted our models on two downstream evaluation tasks -- identifying the underlying disease state of held-out donors not seen during training and distinguishing healthy cells from diseased ones for disease conditions and donors not seen during training. Scaling experiments showed that performance improved predictably with both data volume and parameter count. Our models showed substantial improvement over existing work on the first task and more muted improvements on the second.

  • 16 authors
·
Mar 5, 2025