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Datasets:
zihaojing
/
Cuttlefish-Encoder-Data

Tasks:
Graph Machine Learning
Modalities:
Text
Formats:
parquet
Size:
< 1K
Tags:
biology
protein
molecule
dna
rna
pretraining
Libraries:
Datasets
Dask
Polars
License:
Dataset card Data Studio Files
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 Community
1
zihaojing commited on
Commit
2497d30
·
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1 Parent(s): 1c3feca

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Files changed (22) hide show
  1. molecules/test.parquet +3 -0
  2. molecules/tiny_test.parquet +3 -0
  3. molecules/train.parquet +3 -0
  4. molecules/val.parquet +3 -0
  5. nacid/dna_encoder_fast.parquet +3 -0
  6. nacid/dna_tiny_test.parquet +3 -0
  7. nacid/rna_encoder_fast.parquet +3 -0
  8. nacid/rna_tiny_test.parquet +3 -0
  9. protein/protein_pretrain_4A.parquet +3 -0
  10. protein/protein_pretrain_4A_part_002.parquet +3 -0
  11. protein/protein_pretrain_4A_part_003.parquet +3 -0
  12. protein/protein_pretrain_4A_part_004.parquet +3 -0
  13. protein/protein_pretrain_4A_part_005.parquet +3 -0
  14. protein/protein_pretrain_4A_part_006.parquet +3 -0
  15. protein/protein_pretrain_4A_part_007.parquet +3 -0
  16. protein/protein_pretrain_4A_part_008.parquet +3 -0
  17. protein/protein_pretrain_4A_part_009.parquet +3 -0
  18. protein/protein_pretrain_4A_part_010.parquet +3 -0
  19. test/molecule.parquet +3 -0
  20. test/protein.parquet +3 -0
  21. test/raw/molecule.txt +50 -0
  22. test/raw/protein.txt +17 -0
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+ Cc1cc(=O)oc2ccc3c(c12)C1(C)OOC1(C)O3
2
+ CN(CC(O)CO)N=O
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+ O=[N+]([O-])c1ccc(OC2CO2)cc1
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+ Cn1cnc2cc([N+](=O)[O-])ccc21
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+ CC[C@H](CO)NCCN[C@H](CC)CO
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+ CC(C)(C)NCC(O)c1cc(Cl)c(N)c(C(F)(F)F)c1
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+ Cc1ccc2c(ccc3ccccc32)c1
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+ OC[PH](CO)(CO)CO
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+ C/C=C/c1ccc(OC)cc1
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+ c1ccc2c(c1)-c1cc3c(cc1C1NC21)-c1ccccc1C1NC31
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+ COc1nsc2cccc([N+](=O)[O-])c12
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+ CC(C)=CCC1CCCC1=O
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+ Nc1ccc(Oc2cccc(Oc3ccc(N)cc3)c2)cc1
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+ CCCCCCCCCCCCOC(=O)CCSCCC(=O)OCCCCCCCCCCCC
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+ OCC(CO)N[C@@H]1C[C@](O)(CO)[C@H](O)[C@@H](O)[C@@H]1O
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+ O=[N+]([O-])c1ccc(COc2ccccc2)cc1
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+ CCOC(=O)N(CC)N=O
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+ CCCCCCN(N=O)C(N)=O
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+ ClCc1cccc(CCl)c1
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+ CC1=CC[C@H]2C[C@@H]1C2(C)C
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+ O=[N+]([O-])c1c2c(c3ccc4cccc5ccc1c3c45)CCC=C2
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+ CCCCN(N=O)/C(C=O)=N/O
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+ O=[N+]([O-])c1ccc2ccc3cc4c(c5ccc1c2c35)C(O)C(O)C=C4
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+ CC(=O)Nc1ccc2ccccc2n1
test/raw/protein.txt ADDED
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+ 2MIO
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+ 3AL6
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+ 7F6L
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+ 8ITY
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+ 9FSO
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+ 9FSQ
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+ 5N9G
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+ 6Y7F
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+ 7LXF
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+ 8IUE
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+ 8J07
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+ 9FSP
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+ 9FSR