gnn-ruby-code-study / experiments /gnn_architecture_comparison.yaml
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# Fleet Spec: Controlled GNN Architecture Comparison
#
# Direct comparison of 5 GNN architectures (GCN, SAGE, GAT, GIN, GraphConv)
# with controlled hyperparameters for Ruby code complexity prediction.
#
# Launch:
# ratiocinator fleet run experiments/gnn_architecture_comparison.yaml
#
# Each arm varies ONLY the conv_type. All other hyperparameters are identical.
name: gnn-architecture-comparison
description: "5-way GNN architecture comparison on Ruby AST complexity prediction"
hardware:
gpu: "RTX 4090"
num_gpus: 1
min_cpu_ram_gb: 32
min_inet_down: 1000.0
min_cuda_version: 12.0
max_dph: 0.40
disk_gb: 50.0
image: pytorch/pytorch:2.7.0-cuda12.8-cudnn9-runtime
repo:
url: https://github.com/timlawrenz/jubilant-palm-tree.git
branch: experiment/ratiocinator-gnn-study
clone_depth: 1
data:
source: none
deps:
pre_install:
- "apt-get update -qq && apt-get install -y -qq git-lfs > /dev/null 2>&1 || true"
- "cd /workspace/experiment && git lfs install && git lfs pull"
- "pip install torch-geometric torch-scatter torch-sparse -f https://data.pyg.org/whl/torch-2.7.0+cu128.html"
- "pip install pandas tqdm sentence-transformers nltk scikit-learn numpy"
requirements: requirements.txt
exclude_from_requirements:
- torch
- torchvision
- torch_geometric
verify: "python -c \"import torch_geometric; print(f'PyG {torch_geometric.__version__}')\""
arms:
# ── Architecture comparison (same hyperparams, different conv) ──
- name: sage-baseline
description: "GraphSAGE baseline (original architecture)"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "SAGE"
HIDDEN_DIM: "64"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
- name: gcn
description: "Graph Convolutional Network"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "GCN"
HIDDEN_DIM: "64"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
- name: gat
description: "Graph Attention Network"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "GAT"
HIDDEN_DIM: "64"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
- name: gin
description: "Graph Isomorphism Network"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "GIN"
HIDDEN_DIM: "64"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
- name: graphconv
description: "GraphConv (Morris et al.)"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "GraphConv"
HIDDEN_DIM: "64"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
# ── Hyperparameter variants on best-expected architectures ──
- name: sage-wide
description: "SAGE with 128 hidden dim"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "SAGE"
HIDDEN_DIM: "128"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
- name: gat-wide
description: "GAT with 128 hidden dim"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "GAT"
HIDDEN_DIM: "128"
NUM_LAYERS: "3"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
- name: sage-deep
description: "SAGE with 5 layers"
command: "bash scripts/run_complexity_arm.sh"
env:
CONV_TYPE: "SAGE"
HIDDEN_DIM: "64"
NUM_LAYERS: "5"
DROPOUT: "0.1"
LEARNING_RATE: "0.001"
EPOCHS: "50"
metrics:
protocol: json_line
json_prefix: "METRICS:"
budget:
max_dollars: 10.00
train_timeout_s: 1200
download_timeout_s: 600