interpro_repeat / stats.json
swhitfield's picture
Add sourced InterPro annotation datasets
f5ec0d6 verified
Raw History Blame Contribute Delete
4.3 kB
{
"rows_total": 58924,
"rows_by_split": {
"train": 11785,
"validation": 1473,
"test": 1473,
"train_random": 11785,
"validation_random": 1473,
"test_random": 1473,
"train_stratified": 11785,
"validation_stratified": 1473,
"test_stratified": 1473,
"train_cluster": 11785,
"validation_cluster": 1473,
"test_cluster": 1473
},
"columns": [
"id",
"sequence",
"targets",
"split"
],
"seqkit_stats": [
{
"file": "test.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1004416,
"min_len": 52,
"avg_len": 681.9,
"max_len": 4684,
"Q1": 308.0,
"Q2": 532.0,
"Q3": 837.0,
"sum_gap": 0,
"sum_n": 36887
},
{
"file": "test_cluster.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1024774,
"min_len": 48,
"avg_len": 695.7,
"max_len": 8797,
"Q1": 323.0,
"Q2": 551.0,
"Q3": 799.0,
"sum_gap": 0,
"sum_n": 38324
},
{
"file": "test_random.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1117635,
"min_len": 28,
"avg_len": 758.7,
"max_len": 8749,
"Q1": 356.0,
"Q2": 619.0,
"Q3": 957.0,
"sum_gap": 0,
"sum_n": 43174
},
{
"file": "test_stratified.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1119478,
"min_len": 20,
"avg_len": 760.0,
"max_len": 35939,
"Q1": 372.0,
"Q2": 619.0,
"Q3": 940.0,
"sum_gap": 0,
"sum_n": 42900
},
{
"file": "train.fasta.gz",
"type": "Protein",
"num_seqs": 11785,
"sum_len": 9122906,
"min_len": 20,
"avg_len": 774.1,
"max_len": 35963,
"Q1": 366.0,
"Q2": 618.0,
"Q3": 946.0,
"sum_gap": 0,
"sum_n": 352435
},
{
"file": "train_cluster.fasta.gz",
"type": "Protein",
"num_seqs": 11785,
"sum_len": 8967407,
"min_len": 20,
"avg_len": 760.9,
"max_len": 35805,
"Q1": 368.0,
"Q2": 624.0,
"Q3": 949.0,
"sum_gap": 0,
"sum_n": 349300
},
{
"file": "train_random.fasta.gz",
"type": "Protein",
"num_seqs": 11785,
"sum_len": 9081087,
"min_len": 29,
"avg_len": 770.6,
"max_len": 35963,
"Q1": 367.0,
"Q2": 625.0,
"Q3": 944.0,
"sum_gap": 0,
"sum_n": 352007
},
{
"file": "train_stratified.fasta.gz",
"type": "Protein",
"num_seqs": 11785,
"sum_len": 9057249,
"min_len": 28,
"avg_len": 768.5,
"max_len": 35963,
"Q1": 365.0,
"Q2": 626.0,
"Q3": 952.0,
"sum_gap": 0,
"sum_n": 351612
},
{
"file": "validation.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1197370,
"min_len": 29,
"avg_len": 812.9,
"max_len": 8797,
"Q1": 454.0,
"Q2": 782.0,
"Q3": 1021.0,
"sum_gap": 0,
"sum_n": 49558
},
{
"file": "validation_cluster.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1332511,
"min_len": 35,
"avg_len": 904.6,
"max_len": 35963,
"Q1": 399.0,
"Q2": 717.0,
"Q3": 1048.0,
"sum_gap": 0,
"sum_n": 51256
},
{
"file": "validation_random.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1125970,
"min_len": 20,
"avg_len": 764.4,
"max_len": 7570,
"Q1": 373.0,
"Q2": 620.0,
"Q3": 959.0,
"sum_gap": 0,
"sum_n": 43699
},
{
"file": "validation_stratified.fasta.gz",
"type": "Protein",
"num_seqs": 1473,
"sum_len": 1147965,
"min_len": 48,
"avg_len": 779.3,
"max_len": 35805,
"Q1": 369.0,
"Q2": 614.0,
"Q3": 925.0,
"sum_gap": 0,
"sum_n": 44368
},
{
"file": "overall",
"type": "Protein",
"num_seqs": 58924,
"sum_len": 45298768,
"min_len": 20,
"avg_len": 768.8,
"max_len": 35963,
"Q1": 366.0,
"Q2": 624.0,
"Q3": 948.0,
"sum_gap": 0,
"sum_n": 1755520
}
]
}