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Add Bio-Pulse sample (10K sequences) with README, SCHEMA, parquet, JSONL

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  1. .gitattributes +1 -0
  2. README.md +152 -0
  3. SCHEMA.md +101 -0
  4. bio_pulse_sample.jsonl +3 -0
  5. bio_pulse_sample.parquet +3 -0
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README.md ADDED
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+ ---
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+ license: cc-by-4.0
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+ task_categories:
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+ - tabular-classification
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+ - time-series-forecasting
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+ language:
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+ - en
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+ tags:
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+ - synthetic
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+ - healthcare
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+ - digital-health
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+ - wearables
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+ - remote-patient-monitoring
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+ - precision-medicine
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+ - physiological-telemetry
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+ - early-warning-detection
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+ - clinical-decision-support
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+ - time-series
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+ - hipaa-safe
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+ pretty_name: Bio-Pulse Physiological Telemetry Pack
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+ size_categories:
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+ - 10K<n<100K
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: train
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+ path: bio_pulse_sample.parquet
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+ ---
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+
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+ # Bio-Pulse Physiological Telemetry Pack (Sample)
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+
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+ **A synthetic wearable-sensor physiological telemetry dataset for early-warning detection, digital-health model training, and remote patient monitoring research.** Each row is a complete physiological event sequence — from baseline vitals through a progressing clinical scenario (drug interaction, septic cascade, nocturnal hypoglycemia) — with phenotype context, causal-chain labels, and anomaly-signature detection metadata.
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+
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+ Built by [SolsticeAI](https://www.solsticestudio.ai/datasets) as a free sample of a larger commercial pack. 100% synthetic. No real patient, wearable, or clinical data — fully HIPAA-safe: no PHI, no identifiers, no re-identification risk.
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+
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+ ## What is included
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+
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+ | File | Rows | Format | Purpose |
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+ |---|---:|---|---|
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+ | `bio_pulse_sample.parquet` | 10,000 | Parquet | Columnar, typed, best for analytics |
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+ | `bio_pulse_sample.jsonl` | 10,000 | JSON Lines | Streaming / LLM training friendly |
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+
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+ **This sample:** 10,000 physiological event sequences, balanced across 4 criticality tiers and 3 diagnostic classes.
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+ **Criticality classes:** `low`, `medium`, `high`, `life_threatening` (~2,500 each)
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+ **Diagnostic classes:** `Drug_Interaction_Toxicity`, `Septic_Shock_Cascade`, `Nocturnal_Hypoglycemia` (~3,300 each)
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+ **Patient phenotypes:** `pediatric_asthmatic`, `active_longevity`, `high_stress_corporate`, `sedentary_diabetic`, `geriatric_frailty`
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+ **Sensor assets covered:** Continuous Glucose Monitor, Smart Watch v3, O2 Ring, Neural Patch v2
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+
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+ ## Record structure
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+
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+ Each record is one physiological event sequence with 7 top-level fields:
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+
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+ | Field | Type | Contents |
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+ |---|---|---|
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+ | `schema_version` | string | Pack schema version (`1.0.0-bio-pulse-sample`) |
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+ | `event` | struct | `id`, `trace_id`, `timestamp`, `criticality`, `outcome`, `confidence` |
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+ | `patient_context` | struct | `phenotype`, `age_group`, `existing_conditions[]` |
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+ | `medical_logic` | struct | `diagnostic_class`, `causal_chain[]`, `prediction_window_minutes`, `tracked_biomarkers[]` |
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+ | `vitals_telemetry` | list<struct> | Ordered sensor readings: `timestamp`, `sensor_id`, `sensor_asset`, `event_name`, `vitals` (hr, glucose, spo2, temp_c, cortisol_ugdl, systolic_bp, qt_interval_ms), `patient_id` |
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+ | `detection_logic` | struct | `signature`, `anomaly_score`, `baseline_deviation` |
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+ | `simulation` | struct | `synthetic`, `model`, `fidelity`, `target_diagnoses[]` |
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+
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+ See [SCHEMA.md](./SCHEMA.md) for the full nested field breakdown.
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+
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+ ## Why this dataset is useful
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+
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+ Most public physiological datasets are either highly-scoped single-signal recordings (MIMIC ICU, PhysioNet challenges) or flat aggregated reports. This pack is shaped around what digital-health and wearable-AI teams actually need to train predictive monitoring models:
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+
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+ - Multi-signal sequences rather than single-vital recordings
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+ - Balanced criticality tiers across low → life-threatening
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+ - Causal-chain labels that connect trigger events to outcomes (not just end-state labels)
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+ - Phenotype-aware variability so models don't overfit one population
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+ - Explicit prediction-window fields for early-warning benchmarks
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+ - Cross-sensor coverage (CGM, smart watch, pulse ox, wearable patch)
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+ - Synthetic-by-design — safe to share across vendors, regulators, and research teams
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+
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+ ## Typical use cases
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+
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+ - Early-warning detection model training
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+ - Wearable-device AI and firmware validation
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+ - Remote patient monitoring (RPM) pipelines
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+ - Clinical decision support prototypes
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+ - Digital-health analytics and dashboards
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+ - Phenotype-aware risk stratification
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+ - LLM fine-tuning on physiological narratives + reasoning
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+ - Benchmarking anomaly scores and false-alarm reduction
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+
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+ ## Quick start
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+
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+ ```python
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+ import pandas as pd
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+ import pyarrow.parquet as pq
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+
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+ df = pq.read_table("bio_pulse_sample.parquet").to_pandas()
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+
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+ # Criticality distribution (balanced)
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+ print(df["event"].apply(lambda e: e["criticality"]).value_counts())
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+
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+ # Average anomaly score by diagnostic class
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+ df["dx"] = df["medical_logic"].apply(lambda m: m["diagnostic_class"])
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+ df["anomaly"] = df["detection_logic"].apply(lambda d: d["anomaly_score"])
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+ print(df.groupby("dx")["anomaly"].mean().round(3))
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+
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+ # Pull the QT-interval trajectory for one episode
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+ row = df.iloc[0]
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+ traj = [(v["timestamp"], v["vitals"]["qt_interval_ms"]) for v in row["vitals_telemetry"]]
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+ print(traj)
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+ ```
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+
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+ Streaming form:
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+
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+ ```python
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+ import json
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+
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+ with open("bio_pulse_sample.jsonl") as f:
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+ for line in f:
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+ episode = json.loads(line)
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+ # one physiological sequence per line
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+ ```
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+
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+ ## Responsible use
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+
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+ This dataset is intended for **digital-health research and model development**. It contains synthesized physiological sequences and clinical-scenario labels — it does **not** contain real patient records, PHI, wearable-device telemetry, or identifiable data of any kind. It is HIPAA-safe by construction (no covered data is present). Models trained on this data must be independently validated against real clinical data before any deployment in patient care.
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+
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+ ## License
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+
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+ Released under **CC BY 4.0**. Use freely for research, prototyping, education, and commercial development with attribution.
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+
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+ ## Get the full pack
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+
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+ This Hugging Face repo is a **10K-episode sample**. The production pack scales to 1M+ episodes, wider phenotype and age coverage, additional diagnostic classes (atrial fibrillation, asthma exacerbation, hypertensive crisis, post-op recovery, stroke precursors), richer biomarker panels, device-specific signal-fidelity variants, parquet + JSONL + FHIR-aligned formats, and buyer-specific configurations.
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+
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+ **Self-serve (Stripe checkout):**
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+ - [**Sample Scale tier — $5,000**](https://buy.stripe.com/7sY5kD2j85QTfSb5lfeEo03) — ~25K records, one subject, 72-hour delivery.
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+
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+ **Full pack + enterprise scope:**
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+ - [www.solsticestudio.ai/datasets](https://www.solsticestudio.ai/datasets) — per-SKU pricing across Starter / Professional / Enterprise tiers, plus commercial licensing, custom generation, and buyer-specific variants.
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+
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+ **Procurement catalog:**
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+ - [SolsticeAI Data Storefront](https://solsticeai.mydatastorefront.com) — available via Datarade / Monda.
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @dataset{solstice_bio_pulse_pack_2026,
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+ title = {Bio-Pulse Physiological Telemetry Pack (Sample)},
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+ author = {SolsticeAI},
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+ year = {2026},
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+ publisher = {Hugging Face},
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+ url = {https://huggingface.co/datasets/solsticestudioai/bio-pulse-pack}
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+ }
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+ ```
SCHEMA.md ADDED
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+ # Bio-Pulse Physiological Telemetry Pack — Schema
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+
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+ One row = one physiological event sequence, end-to-end. All records share the same seven top-level fields.
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+
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+ Schema version: `1.0.0-bio-pulse-sample`
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+
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+ ## Top-level fields
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+
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+ ### `schema_version` — string
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+ Schema identifier. Constant within a sample release. Used to detect pack version drift.
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+
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+ ### `event` — struct
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+ Identifier fields and the overall clinical outcome for the sequence.
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+
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+ | Field | Type | Notes |
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+ |---|---|---|
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+ | `id` | string | Stable episode identifier, e.g., `BIOPULSE-100000`. |
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+ | `trace_id` | string (UUID) | Cross-links telemetry steps within the sequence. |
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+ | `timestamp` | string (ISO-8601) | Episode start time. |
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+ | `criticality` | string | `low`, `medium`, `high`, `life_threatening`. |
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+ | `outcome` | string | `patient_stabilized`, `intervention_successful`, `morbidity_risk_detected`. |
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+ | `confidence` | double | 0–1. Confidence of the outcome label. |
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+
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+ ### `patient_context` — struct
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+ Synthetic patient archetype and baseline risk factors.
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+
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+ | Field | Type | Notes |
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+ |---|---|---|
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+ | `phenotype` | string | One of: `pediatric_asthmatic`, `active_longevity`, `high_stress_corporate`, `sedentary_diabetic`, `geriatric_frailty`. |
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+ | `age_group` | string | `18-30`, `31-50`, `51-70`, `70+`. |
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+ | `existing_conditions` | list<string> | Conditions carried by the synthetic patient (e.g., `asthma`, `type-2-diabetes`). |
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+
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+ ### `medical_logic` — struct
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+ Clinical scenario driving the sequence and the biomarkers being tracked.
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+
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+ | Field | Type | Notes |
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+ |---|---|---|
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+ | `diagnostic_class` | string | `Drug_Interaction_Toxicity`, `Septic_Shock_Cascade`, `Nocturnal_Hypoglycemia`. |
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+ | `causal_chain` | list<string> | Ordered causal event labels (e.g., `MEDICATION_INGESTION_A`, `LIVER_ENZYME_DRIFT_SIMULATED`, `ARRHYTHMIA_DETECTION`). |
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+ | `prediction_window_minutes` | int | Minutes of lead time available before the terminal event. |
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+ | `tracked_biomarkers` | list<string> | Which biomarkers are reported in `vitals_telemetry.vitals` (e.g., `glucose_mgdl`, `heart_rate_bpm`, `qt_interval_ms`). |
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+
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+ ### `vitals_telemetry` — list<struct>
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+ Ordered sensor readings for the episode. One struct per reading.
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+
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+ Reading struct:
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+
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+ | Field | Type | Notes |
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+ |---|---|---|
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+ | `timestamp` | string (ISO-8601) | Reading timestamp. |
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+ | `sensor_id` | string | Synthetic sensor serial (e.g., `SENS-6ACEC5`). |
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+ | `sensor_asset` | string | One of: `CGM_Sensor`, `Smart_Watch_V3`, `O2_Ring`, `Neural_Patch_V2`. |
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+ | `event_name` | string | Label for what happened at this reading (matches one item in `medical_logic.causal_chain`). |
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+ | `patient_id` | string | Synthetic patient identifier (e.g., `PAT-D884ED0A`). Not real. |
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+ | `vitals.hr` | int | Heart rate (bpm). |
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+ | `vitals.glucose` | double | Blood glucose (mg/dL). |
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+ | `vitals.spo2` | int | Peripheral oxygen saturation (%). |
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+ | `vitals.temp_c` | double | Body temperature (°C). |
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+ | `vitals.cortisol_ugdl` | double | Cortisol (µg/dL). |
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+ | `vitals.systolic_bp` | int | Systolic blood pressure (mmHg). |
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+ | `vitals.qt_interval_ms` | int | QT interval (ms). |
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+
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+ ### `detection_logic` — struct
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+ Anomaly-signature metadata describing why this sequence is flagged.
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+
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+ | Field | Type | Notes |
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+ |---|---|---|
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+ | `signature` | string | Human-readable signature name (e.g., `Predictive Drug_Interaction_Toxicity for pediatric_asthmatic`). |
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+ | `anomaly_score` | double | 0–1. Higher = more anomalous. |
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+ | `baseline_deviation` | string | Short English description of the deviation pattern. |
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+
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+ ### `simulation` — struct
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+ Simulation engine provenance.
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+
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+ | Field | Type | Notes |
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+ |---|---|---|
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+ | `synthetic` | bool | Always `true`. |
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+ | `model` | string | Simulation engine label (`bio_pulse_sim_v1` in this sample). |
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+ | `fidelity` | string | `Clinical_Grade`. |
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+ | `target_diagnoses` | list<string> | Diagnoses this engine can produce (e.g., `Hypoglycemic_Event`, `Septic_Shock`). |
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+
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+ ## Distribution of this sample
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+
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+ - 10,000 sequences total.
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+ - Criticality: balanced across `low` / `medium` / `high` / `life_threatening` (~2,500 each).
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+ - Diagnostic class: balanced across 3 classes (~3,300 each).
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+ - Phenotype: balanced across 5 archetypes (~2,000 each).
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+ - Age group: skewed toward `70+` (~3,200) to reflect chronic-care monitoring use cases.
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+ - Simulation engine label constant (`bio_pulse_sim_v1`) after sanitization.
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+
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+ ## Sanitization notes
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+
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+ - Internal identifier prefix (`SIMA-V4-BIO-*`) has been normalized to `BIOPULSE-*`.
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+ - Internal engine code name has been normalized to `bio_pulse_sim_v1`.
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+ - Wearable device name previously labeled `Neural_Link_Beta` has been renamed to `Neural_Patch_V2` to avoid collision with an unrelated company trademark.
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+ - No real patient IDs, names, clinic names, device serials, or health records are present. All identifiers are synthetic.
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+ - Dataset is HIPAA-safe by construction: no covered data is present.
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+
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+ ## Relationship to the full pack
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+
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+ The production pack scales to 1M+ sequences with wider phenotype coverage, additional diagnostic classes (atrial fibrillation, asthma exacerbation, hypertensive crisis, post-op recovery, stroke precursors), richer biomarker panels, device-specific fidelity variants, longer causal chains, and FHIR-aligned delivery. See the pack card for commercial access.
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