us4us: sync data card and figures with GitHub
Browse filesSyncs the us4us card and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).
One correction: the card said every file holds 10 slices except the water reference. `yezitronix-b-rg-1.2.hdf5` holds 11, `reference_water.hdf5` holds one, and the forearm files hold 10.
Adds the figure the card now leads with, `assets/s1_l_reconstruct.png`: slice 8 of `data/s1_l.hdf5`, a left-forearm cross-section reconstructed by `reconstruct.py` beside the sinogram and reference image stored in the file. The card gains a title, that figure, and a Data Validation line saying how to reproduce it (set `ZEA_FILE` and `FRAME` at the top of the script). `assets/main.png` is the release image and is not embedded in the card.
Files changed: 3.
```
+ us4us/assets/main.png
+ us4us/assets/s1_l_reconstruct.png
~ us4us/README.md
```
- us4us/README.md +11 -1
- us4us/assets/main.png +3 -0
- us4us/assets/s1_l_reconstruct.png +3 -0
|
@@ -19,6 +19,15 @@ size_categories:
|
|
| 19 |
- n<1K
|
| 20 |
---
|
| 21 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 22 |
## Dataset Description
|
| 23 |
Raw RF data acquired with the us4us Ltd. us4R system and a Draminski ring probe.
|
| 24 |
|
|
@@ -79,7 +88,7 @@ No preprocessing was performed on the raw channel data.
|
|
| 79 |
|
| 80 |
**Current OpenH-RF release:** 18 HDF5 files; 32.66 GB (32,658,423,808 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
|
| 81 |
|
| 82 |
-
* Each HDF5 file contains 10 slices of the subject
|
| 83 |
* Stored HDF5 file sizes vary: 1.89 GB to 1.95 GB excluding the water reference. `reference_water.hdf5` is 183,107,584 bytes (183.11 MB).
|
| 84 |
|
| 85 |
|
|
@@ -92,6 +101,7 @@ The dataset contains data from:
|
|
| 92 |
|
| 93 |
## Data Validation
|
| 94 |
* The data files contain attenuation sinograms and images reconstructed from raw data using the filtered backprojection algorithm.
|
|
|
|
| 95 |
|
| 96 |
|
| 97 |
## Known Issues
|
|
|
|
| 19 |
- n<1K
|
| 20 |
---
|
| 21 |
|
| 22 |
+
# us4us Ring-Array USCT
|
| 23 |
+
|
| 24 |
+

|
| 25 |
+
|
| 26 |
+
A left-forearm cross-section, slice 8 of
|
| 27 |
+
[`data/s1_l.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/us4us/data/s1_l.hdf5),
|
| 28 |
+
reconstructed by [`reconstruct.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/us4us/reconstruct.py)
|
| 29 |
+
beside the sinogram and reference image stored in the file.
|
| 30 |
+
|
| 31 |
## Dataset Description
|
| 32 |
Raw RF data acquired with the us4us Ltd. us4R system and a Draminski ring probe.
|
| 33 |
|
|
|
|
| 88 |
|
| 89 |
**Current OpenH-RF release:** 18 HDF5 files; 32.66 GB (32,658,423,808 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
|
| 90 |
|
| 91 |
+
* Each forearm HDF5 file contains 10 slices of the subject; `yezitronix-b-rg-1.2.hdf5` contains 11 and `reference_water.hdf5` a single slice.
|
| 92 |
* Stored HDF5 file sizes vary: 1.89 GB to 1.95 GB excluding the water reference. `reference_water.hdf5` is 183,107,584 bytes (183.11 MB).
|
| 93 |
|
| 94 |
|
|
|
|
| 101 |
|
| 102 |
## Data Validation
|
| 103 |
* The data files contain attenuation sinograms and images reconstructed from raw data using the filtered backprojection algorithm.
|
| 104 |
+
* [`reconstruct.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/us4us/reconstruct.py) rebuilds both from `data/raw_data` and plots them beside the stored versions. Set `ZEA_FILE` and `FRAME` at the top of the script and run `python reconstruct.py`.
|
| 105 |
|
| 106 |
|
| 107 |
## Known Issues
|
|
Git LFS Details
|
|
Git LFS Details
|