tristan-deep commited on
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1 Parent(s): fa053c5

us4us: sync data card and figures with GitHub

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Syncs the us4us card and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).

One correction: the card said every file holds 10 slices except the water reference. `yezitronix-b-rg-1.2.hdf5` holds 11, `reference_water.hdf5` holds one, and the forearm files hold 10.

Adds the figure the card now leads with, `assets/s1_l_reconstruct.png`: slice 8 of `data/s1_l.hdf5`, a left-forearm cross-section reconstructed by `reconstruct.py` beside the sinogram and reference image stored in the file. The card gains a title, that figure, and a Data Validation line saying how to reproduce it (set `ZEA_FILE` and `FRAME` at the top of the script). `assets/main.png` is the release image and is not embedded in the card.

Files changed: 3.

```
+ us4us/assets/main.png
+ us4us/assets/s1_l_reconstruct.png
~ us4us/README.md
```

us4us/README.md CHANGED
@@ -19,6 +19,15 @@ size_categories:
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  - n<1K
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  ---
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  ## Dataset Description
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  Raw RF data acquired with the us4us Ltd. us4R system and a Draminski ring probe.
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@@ -79,7 +88,7 @@ No preprocessing was performed on the raw channel data.
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  **Current OpenH-RF release:** 18 HDF5 files; 32.66 GB (32,658,423,808 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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- * Each HDF5 file contains 10 slices of the subject, except `reference_water.hdf5`, which contains a single slice.
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  * Stored HDF5 file sizes vary: 1.89 GB to 1.95 GB excluding the water reference. `reference_water.hdf5` is 183,107,584 bytes (183.11 MB).
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@@ -92,6 +101,7 @@ The dataset contains data from:
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  ## Data Validation
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  * The data files contain attenuation sinograms and images reconstructed from raw data using the filtered backprojection algorithm.
 
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  ## Known Issues
 
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  - n<1K
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  ---
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+ # us4us Ring-Array USCT
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+
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+ ![Ring-array USCT reconstruction of a forearm cross-section](assets/s1_l_reconstruct.png)
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+
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+ A left-forearm cross-section, slice 8 of
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+ [`data/s1_l.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/us4us/data/s1_l.hdf5),
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+ reconstructed by [`reconstruct.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/us4us/reconstruct.py)
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+ beside the sinogram and reference image stored in the file.
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+
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  ## Dataset Description
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  Raw RF data acquired with the us4us Ltd. us4R system and a Draminski ring probe.
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  **Current OpenH-RF release:** 18 HDF5 files; 32.66 GB (32,658,423,808 bytes) stored; root `zea_version` **0.1.6**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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+ * Each forearm HDF5 file contains 10 slices of the subject; `yezitronix-b-rg-1.2.hdf5` contains 11 and `reference_water.hdf5` a single slice.
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  * Stored HDF5 file sizes vary: 1.89 GB to 1.95 GB excluding the water reference. `reference_water.hdf5` is 183,107,584 bytes (183.11 MB).
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  ## Data Validation
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  * The data files contain attenuation sinograms and images reconstructed from raw data using the filtered backprojection algorithm.
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+ * [`reconstruct.py`](https://github.com/open-h/OpenH-RF/blob/main/datasets/us4us/reconstruct.py) rebuilds both from `data/raw_data` and plots them beside the stored versions. Set `ZEA_FILE` and `FRAME` at the top of the script and run `python reconstruct.py`.
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  ## Known Issues
us4us/assets/main.png ADDED

Git LFS Details

  • SHA256: e0babb1fc796d91b9b142b7f5799a38760d4b989c654ae09001d15aac69c0351
  • Pointer size: 131 Bytes
  • Size of remote file: 731 kB
us4us/assets/s1_l_reconstruct.png ADDED

Git LFS Details

  • SHA256: e8bd58c8dcb7069a4f10f614345da467d18b437a7fcd2517ef358435fa18f4e7
  • Pointer size: 131 Bytes
  • Size of remote file: 823 kB