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weizmann-sampl: sync data card and figures with GitHub

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Syncs the weizmann-sampl card and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).

One correction to the field table: `raw_data`'s axial dimension is 2176, not 4096 — and 2048 in one of the 30 acquisitions. The table now states both.

Adds the three figures. `assets/30_1.gif` is the cine loop the card now leads with, reconstructed from `data/30_1.hdf5` with the `pipeline.yaml` in this folder. `assets/three_patients_grid.png` is the validation figure — three frames from each of three subjects — which the card embedded from the folder root, where it was never uploaded, so it was broken here; its caption now describes the figure instead of a `reconstruct.py` invocation that no longer matches the script. `assets/30_1.png` is a single frame from the loop and is not embedded in the card.

Files changed: 4.

```
+ weizmann-sampl/assets/30_1.gif
+ weizmann-sampl/assets/30_1.png
+ weizmann-sampl/assets/three_patients_grid.png
~ weizmann-sampl/README.md
```

weizmann-sampl/README.md CHANGED
@@ -14,6 +14,12 @@ tags:
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  # OpenH-RF Thyroid Clinical Scans
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  ## Dataset Description
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  The data set consists of clinical ultrasound channel data acquired
@@ -69,7 +75,7 @@ the frames prior to workspace parameter freezing were removed from the raw chann
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  | Field | Shape | Dtype | Units | Description |
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  |---|------------------------------|---|---|---|
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- | `tracks/track_0/data/raw_data` | (nframes, 128, 4096, 128, 1) | int16 | ADC counts | Raw per-element RF channel data: (frames, transmits, axial samples, elements, 1) |
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  | `tracks/track_0/scan/t0_delays` | (128, 128) | float32 | s | Per-transmit, per-element transmit delay |
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  | `tracks/track_0/scan/tx_apodizations` | (128, 128) | float32 | unitless (0-1) | Per-transmit, per-element transmit apodization weight |
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  | `tracks/track_0/scan/polar_angles` | (128,) | float32 | rad | Per-transmit polar steering angle |
@@ -110,11 +116,10 @@ apply window → demodulate → DAS beamform (with native, per-element/per-pixel
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  lens correction) → envelope detect → normalize → log compress. See that file
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  for the grid size, dynamic range and lens-correction parameters.
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- Example reconstruction, run via `python reconstruct.py --data-dir subjects
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- --n-scans 3 --n-frames 3 --seed 0 --output three_patients_grid.png`
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- (3 subjects, 3 randomly sampled frames each):
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- ![3 frames from 3 different subjects](three_patients_grid.png)
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  All 9 sampled frames, across 3 different subjects, show consistent diffuse
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  in-vivo tissue speckle with no reconstruction artifacts, confirming the
 
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  # OpenH-RF Thyroid Clinical Scans
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+ ![Reconstructed cineloop from 30_1.hdf5](assets/30_1.gif)
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+
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+ Cine loop of [`30_1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/weizmann-sampl/data/30_1.hdf5), reconstructed from the raw
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+ channel data with the `pipeline.yaml` in this folder.
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+
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+
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  ## Dataset Description
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  The data set consists of clinical ultrasound channel data acquired
 
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  | Field | Shape | Dtype | Units | Description |
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  |---|------------------------------|---|---|---|
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+ | `tracks/track_0/data/raw_data` | (nframes, 128, 2176, 128, 1) | int16 | ADC counts | Raw per-element RF channel data: (frames, transmits, axial samples, elements, 1); the axial dimension is 2176 in 29 of the 30 acquisitions and 2048 in the remaining one |
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  | `tracks/track_0/scan/t0_delays` | (128, 128) | float32 | s | Per-transmit, per-element transmit delay |
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  | `tracks/track_0/scan/tx_apodizations` | (128, 128) | float32 | unitless (0-1) | Per-transmit, per-element transmit apodization weight |
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  | `tracks/track_0/scan/polar_angles` | (128,) | float32 | rad | Per-transmit polar steering angle |
 
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  lens correction) → envelope detect → normalize → log compress. See that file
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  for the grid size, dynamic range and lens-correction parameters.
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+ Three frames from each of three subjects, reconstructed with the `pipeline.yaml`
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+ in this folder:
 
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+ ![3 frames from 3 different subjects](assets/three_patients_grid.png)
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  All 9 sampled frames, across 3 different subjects, show consistent diffuse
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  in-vivo tissue speckle with no reconstruction artifacts, confirming the
weizmann-sampl/assets/30_1.gif ADDED

Git LFS Details

  • SHA256: 041e8cc82d34ffaff22a1b52eb520f4cb9e75c5e346522612d978ee7a42b98c7
  • Pointer size: 132 Bytes
  • Size of remote file: 1.62 MB
weizmann-sampl/assets/30_1.png ADDED

Git LFS Details

  • SHA256: 8bf3555ae5f81eef6e12b6597429038c91f020290c2db874e956214eeeff72f7
  • Pointer size: 131 Bytes
  • Size of remote file: 180 kB
weizmann-sampl/assets/three_patients_grid.png ADDED

Git LFS Details

  • SHA256: 48dac58cf11b4f103979f256fd6a3761bf7d1f8531ccb94f91ea4d18cac35ae6
  • Pointer size: 132 Bytes
  • Size of remote file: 1.99 MB