weizmann-sampl: sync data card and figures with GitHub
Browse filesSyncs the weizmann-sampl card and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).
One correction to the field table: `raw_data`'s axial dimension is 2176, not 4096 — and 2048 in one of the 30 acquisitions. The table now states both.
Adds the three figures. `assets/30_1.gif` is the cine loop the card now leads with, reconstructed from `data/30_1.hdf5` with the `pipeline.yaml` in this folder. `assets/three_patients_grid.png` is the validation figure — three frames from each of three subjects — which the card embedded from the folder root, where it was never uploaded, so it was broken here; its caption now describes the figure instead of a `reconstruct.py` invocation that no longer matches the script. `assets/30_1.png` is a single frame from the loop and is not embedded in the card.
Files changed: 4.
```
+ weizmann-sampl/assets/30_1.gif
+ weizmann-sampl/assets/30_1.png
+ weizmann-sampl/assets/three_patients_grid.png
~ weizmann-sampl/README.md
```
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# OpenH-RF Thyroid Clinical Scans
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## Dataset Description
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The data set consists of clinical ultrasound channel data acquired
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| Field | Shape | Dtype | Units | Description |
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| `tracks/track_0/data/raw_data` | (nframes, 128,
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| `tracks/track_0/scan/t0_delays` | (128, 128) | float32 | s | Per-transmit, per-element transmit delay |
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| `tracks/track_0/scan/tx_apodizations` | (128, 128) | float32 | unitless (0-1) | Per-transmit, per-element transmit apodization weight |
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| `tracks/track_0/scan/polar_angles` | (128,) | float32 | rad | Per-transmit polar steering angle |
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lens correction) → envelope detect → normalize → log compress. See that file
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for the grid size, dynamic range and lens-correction parameters.
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(3 subjects, 3 randomly sampled frames each):
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All 9 sampled frames, across 3 different subjects, show consistent diffuse
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in-vivo tissue speckle with no reconstruction artifacts, confirming the
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# OpenH-RF Thyroid Clinical Scans
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Cine loop of [`30_1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/weizmann-sampl/data/30_1.hdf5), reconstructed from the raw
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channel data with the `pipeline.yaml` in this folder.
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## Dataset Description
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The data set consists of clinical ultrasound channel data acquired
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| Field | Shape | Dtype | Units | Description |
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| `tracks/track_0/data/raw_data` | (nframes, 128, 2176, 128, 1) | int16 | ADC counts | Raw per-element RF channel data: (frames, transmits, axial samples, elements, 1); the axial dimension is 2176 in 29 of the 30 acquisitions and 2048 in the remaining one |
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| `tracks/track_0/scan/t0_delays` | (128, 128) | float32 | s | Per-transmit, per-element transmit delay |
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| `tracks/track_0/scan/tx_apodizations` | (128, 128) | float32 | unitless (0-1) | Per-transmit, per-element transmit apodization weight |
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| `tracks/track_0/scan/polar_angles` | (128,) | float32 | rad | Per-transmit polar steering angle |
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lens correction) → envelope detect → normalize → log compress. See that file
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for the grid size, dynamic range and lens-correction parameters.
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Three frames from each of three subjects, reconstructed with the `pipeline.yaml`
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in this folder:
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All 9 sampled frames, across 3 different subjects, show consistent diffuse
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in-vivo tissue speckle with no reconstruction artifacts, confirming the
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Git LFS Details
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Git LFS Details
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Git LFS Details
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