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tue-aaa: restructure the data card to the common layout

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  1. tue-aaa/README.md +25 -19
tue-aaa/README.md CHANGED
@@ -1,5 +1,6 @@
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  ---
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- pretty_name: "OpenH-RF — TU/e PULS/e — Abdominal Aortic Aneurysm (C5-2v) channel data"
 
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  license: cc-by-4.0
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  task_categories:
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  - image-to-image
@@ -15,20 +16,11 @@ language:
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  - en
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  ---
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- # Abdominal Aortic Aneurysm (AAA) curved-array channel data
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  ![Reconstructed cineloop from AAA_subject11.hdf5](assets/AAA_subject11.gif)
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- Cine loop of [`AAA_subject11.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-aaa/data/AAA_subject11.hdf5),
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- reconstructed from the raw channel data. `zea` renders the whole acquisition straight
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- from the Hub:
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-
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- ```bash
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- zea process \
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- --dataset hf://nvidia/OpenH-RF/tue-aaa/data/AAA_subject11.hdf5 \
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- --config hf://nvidia/OpenH-RF/tue-aaa/pipeline.yaml \
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- ```
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-
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  ## Dataset Description
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  ## Dataset Contributor(s)
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- PULS/e group
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- Department of Biomedical Engineering
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- Eindhoven University of Technology
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- contact: Hans-Martin Schwab (h.schwab@tue.nl)
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  ## Dataset Creation Date
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  ## License / Terms of Use
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- CC BY 4.0.
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  ## Intended Usage
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- Advanced beamforming
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- Motion estimation
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  ## Dataset Characterization
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  - **Acquisition system:** Verasonics Vantage, C5-2v curved array, 128 elements, center frequency 3.6 MHz
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  - **Transmit sequence:** 15 steered diverging waves (polar angles −12° … +12°)
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  ## Dataset Format
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  zea file format. Subject metadata is stored under `metadata/subject` (`age`, `sex`, `bmi`); attribution under `metadata/credit`.
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  ## Dataset Quantification
 
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  ---
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+ name: tue-aaa
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+ pretty_name: "TU/e PULS/e — Abdominal Aortic Aneurysm (C5-2v) channel data"
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  license: cc-by-4.0
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  task_categories:
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  - image-to-image
 
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  - en
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  ---
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+ # TU/e Abdominal Aortic Aneurysm (AAA) Curved-Array Channel Data
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  ![Reconstructed cineloop from AAA_subject11.hdf5](assets/AAA_subject11.gif)
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+ *Cine loop of [`data/AAA_subject11.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-aaa/data/AAA_subject11.hdf5), reconstructed from the raw channel data.*
 
 
 
 
 
 
 
 
 
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  ## Dataset Description
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  ## Dataset Contributor(s)
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+ - Hans-Martin Schwab <h.schwab@tue.nl> (contact)
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+ - PULS/e group, Department of Biomedical Engineering, Eindhoven University of Technology
 
 
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  ## Dataset Creation Date
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  ## License / Terms of Use
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+ [Creative Commons Attribution 4.0 International (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/legalcode.en). Retain attribution and identify modifications when reusing the data.
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  ## Intended Usage
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+ - Advanced beamforming
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+ - Motion estimation
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  ## Dataset Characterization
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  - **Acquisition system:** Verasonics Vantage, C5-2v curved array, 128 elements, center frequency 3.6 MHz
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  - **Transmit sequence:** 15 steered diverging waves (polar angles −12° … +12°)
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+ ## Processing the Dataset
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+
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+ The acquisitions can be processed with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea).
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+
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+ `zea` streams the data from the Hugging Face Hub and processes it according to the pipeline. You can try it out with the following command:
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+
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+ ```bash
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+ zea process \
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+ --dataset hf://nvidia/OpenH-RF/tue-aaa/data/AAA_subject11.hdf5 \
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+ --config hf://nvidia/OpenH-RF/tue-aaa/pipeline.yaml
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+ ```
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+
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+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tue-aaa/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
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+
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  ## Dataset Format
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+ [zea v0.1.4](https://github.com/tue-bmd/zea)
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+
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  zea file format. Subject metadata is stored under `metadata/subject` (`age`, `sex`, `bmi`); attribution under `metadata/credit`.
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  ## Dataset Quantification