tel-aviv: sync data card, mouse_tumor pipeline and figures with GitHub
Browse filesSyncs the tel-aviv (Ilovitsh Lab) card, pipeline and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).
`mouse_tumor/pipeline.yaml` raises the axial grid from 256 to 352 samples over the same 0-72 mm depth range, matching the reference reconstruction. The lateral grid and limits are unchanged.
Adds the cine loop the card now leads with, `assets/01-scan-3.gif`: `mouse_tumor/seg/01-scan-3.hdf5` reconstructed from the raw channel data with that pipeline. `assets/main.png` is the release image and is not embedded in the card.
Files changed: 4.
```
+ tel-aviv/assets/01-scan-3.gif
+ tel-aviv/assets/main.png
~ tel-aviv/README.md
~ tel-aviv/mouse_tumor/pipeline.yaml
```
- tel-aviv/README.md +6 -0
- tel-aviv/assets/01-scan-3.gif +3 -0
- tel-aviv/assets/main.png +3 -0
- tel-aviv/mouse_tumor/pipeline.yaml +1 -1
tel-aviv/README.md
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@@ -7,6 +7,12 @@ tags: [ultrasound, rf, openh-rf]
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# Ilovitsh Lab Mice Tumors & Water-Bead Phantoms
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## Dataset Description
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This dataset provides ultrasound data captured via a motorized 1D transducer array. It captures both in-vivo tumors in mice and in-silico water-bead phantoms, and was originally acquired as part of our work on implicit neural representations (INR) [1].
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# Ilovitsh Lab Mice Tumors & Water-Bead Phantoms
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Cine loop of [`01-scan-3.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tel-aviv/mouse_tumor/seg/01-scan-3.hdf5), reconstructed from the raw
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channel data with the `pipeline.yaml` in this folder.
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## Dataset Description
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This dataset provides ultrasound data captured via a motorized 1D transducer array. It captures both in-vivo tumors in mice and in-silico water-bead phantoms, and was originally acquired as part of our work on implicit neural representations (INR) [1].
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tel-aviv/assets/01-scan-3.gif
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Git LFS Details
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tel-aviv/assets/main.png
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Git LFS Details
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tel-aviv/mouse_tumor/pipeline.yaml
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@@ -2,7 +2,7 @@ parameters:
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xlims: [-0.01902, 0.01863]
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zlims: [0.0, 0.072]
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grid_size_x: 256
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grid_size_z:
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pipeline:
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operations:
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xlims: [-0.01902, 0.01863]
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zlims: [0.0, 0.072]
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grid_size_x: 256
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grid_size_z: 352
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pipeline:
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operations:
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