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Commit
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1 Parent(s): fa053c5

tel-aviv: sync data card, mouse_tumor pipeline and figures with GitHub

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Syncs the tel-aviv (Ilovitsh Lab) card, pipeline and figures on the Hub with the reviewed state on GitHub (open-h/OpenH-RF).

`mouse_tumor/pipeline.yaml` raises the axial grid from 256 to 352 samples over the same 0-72 mm depth range, matching the reference reconstruction. The lateral grid and limits are unchanged.

Adds the cine loop the card now leads with, `assets/01-scan-3.gif`: `mouse_tumor/seg/01-scan-3.hdf5` reconstructed from the raw channel data with that pipeline. `assets/main.png` is the release image and is not embedded in the card.

Files changed: 4.

```
+ tel-aviv/assets/01-scan-3.gif
+ tel-aviv/assets/main.png
~ tel-aviv/README.md
~ tel-aviv/mouse_tumor/pipeline.yaml
```

tel-aviv/README.md CHANGED
@@ -7,6 +7,12 @@ tags: [ultrasound, rf, openh-rf]
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  # Ilovitsh Lab Mice Tumors & Water-Bead Phantoms
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  ## Dataset Description
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  This dataset provides ultrasound data captured via a motorized 1D transducer array. It captures both in-vivo tumors in mice and in-silico water-bead phantoms, and was originally acquired as part of our work on implicit neural representations (INR) [1].
 
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  # Ilovitsh Lab Mice Tumors & Water-Bead Phantoms
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+ ![Reconstructed cineloop from 01-scan-3.hdf5](assets/01-scan-3.gif)
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+
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+ Cine loop of [`01-scan-3.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tel-aviv/mouse_tumor/seg/01-scan-3.hdf5), reconstructed from the raw
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+ channel data with the `pipeline.yaml` in this folder.
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+
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+
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  ## Dataset Description
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  This dataset provides ultrasound data captured via a motorized 1D transducer array. It captures both in-vivo tumors in mice and in-silico water-bead phantoms, and was originally acquired as part of our work on implicit neural representations (INR) [1].
tel-aviv/assets/01-scan-3.gif ADDED

Git LFS Details

  • SHA256: 5cfd14ce105cd69ad99a8fff451e15421f2a0ea76bc0c576de886537bc850a98
  • Pointer size: 132 Bytes
  • Size of remote file: 6.45 MB
tel-aviv/assets/main.png ADDED

Git LFS Details

  • SHA256: d19e4140a825cbdbc1b75bf9537102d9675792dd907d073bd1b6c64580c0b64f
  • Pointer size: 131 Bytes
  • Size of remote file: 214 kB
tel-aviv/mouse_tumor/pipeline.yaml CHANGED
@@ -2,7 +2,7 @@ parameters:
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  xlims: [-0.01902, 0.01863]
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  zlims: [0.0, 0.072]
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  grid_size_x: 256
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- grid_size_z: 256
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  pipeline:
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  operations:
 
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  xlims: [-0.01902, 0.01863]
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  zlims: [0.0, 0.072]
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  grid_size_x: 256
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+ grid_size_z: 352
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  pipeline:
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  operations: