# quickstart_dimension_labels.py # # LICENSE # # The MIT License # # Copyright (c) 2023 TileDB, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # DESCRIPTION # # Please refer to the TileDB and TileDB-Py documentation for more information: # https://docs.tiledb.com/main/how-to # https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/python-api.html # # When run, this program will create a simple 2D dense array with dimension labels, write # some data to it, and read a slice of the data back. # import numpy as np import tiledb def create_array(uri: str): """Create array schema with dimension labels""" dim1 = tiledb.Dim("d1", domain=(1, 5)) dim2 = tiledb.Dim("d2", domain=(1, 5)) dom = tiledb.Domain(dim1, dim2) att = tiledb.Attr("a1", dtype=np.int64) dim_labels = { 0: {"l1": dim1.create_label_schema("decreasing", np.int64)}, 1: { "l2": dim2.create_label_schema("increasing", np.int64), "l3": dim2.create_label_schema("increasing", np.float64), }, } schema = tiledb.ArraySchema(domain=dom, attrs=(att,), dim_labels=dim_labels) tiledb.Array.create(uri, schema) def write_array(uri: str): """Write attribute and label data to the array""" a1_data = np.reshape(np.arange(1, 26), (5, 5)) l1_data = np.arange(5, 0, -1) l2_data = np.arange(-2, 3) l3_data = np.linspace(-1.0, 1.0, 5) with tiledb.open(uri, "w") as array: array[:] = {"a1": a1_data, "l1": l1_data, "l2": l2_data, "l3": l3_data} def read_array(uri: str): """Read the array from the dimension label""" with tiledb.open(uri, "r") as array: data1 = array.label_index(["l2"])[1, -1:1] print("Reading array on [[1, -1:1]] with label 'l2' on dim2") for name, value in data1.items(): print(f" '{name}'={value}") data2 = array.label_index(["l1", "l2"])[4:5, -2:2] print("Reading array on [[4:5, -2:2]] with label 'l1' on dim1 and 'l2' on dim2") for name, value in data2.items(): print(f" '{name}'={value}") data3 = array.label_index(["l3"])[1, 0.0:2.0] print("Reading array on [[1, 0.0:2.0]] with label 'l3' on dim2") for name, value in data3.items(): print(f" '{name}'={value}") if __name__ == "__main__": # Name of the array to create. ARRAY_NAME = "quickstart_labels" LIBVERSION = tiledb.libtiledb.version() if LIBVERSION[0] == 2 and LIBVERSION[1] < 15: print( f"Dimension labels requires libtiledb version >= 2.15.0. Current version is" f" {LIBVERSION[0]}.{LIBVERSION[1]}.{LIBVERSION[2]}" ) else: # Only create and write to the array if it doesn't already exist. if tiledb.object_type(ARRAY_NAME) != "array": create_array(ARRAY_NAME) write_array(ARRAY_NAME) # Read from the array and print output. read_array(ARRAY_NAME)