# query_condition_sparse.py # # LICENSE # # The MIT License # # Copyright (c) 2021 TileDB, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # This example creates an array with one string-typed attribute, # writes sample data to the array, and then prints out a filtered # dataframe using the TileDB QueryCondition feature. from pprint import pprint import numpy as np import tiledb uri = "query_condition_sparse" def create_array(path): # create a sparse array dom = tiledb.Domain( tiledb.Dim(name="coords", domain=(1, 10), tile=1, dtype=np.uint32) ) attrs = [ tiledb.Attr(name="attr1", dtype=np.uint64), tiledb.Attr(name="attr2", dtype=np.float64), ] schema = tiledb.ArraySchema(domain=dom, attrs=attrs, sparse=True) tiledb.Array.create(path, schema, overwrite=True) # fill array with randomized values with tiledb.open(path, "w") as arr: rand = np.random.default_rng() arr[np.arange(1, 11)] = { "attr1": rand.integers(low=0, high=10, size=10), "attr2": rand.random(size=10), } def read_array(path): with tiledb.open(uri) as arr: print("--- without query condition:") print() pprint(arr[:]) print() with tiledb.open(uri) as arr: qc = "(2 < attr1 < 6) and (attr2 < 0.5 or attr2 > 0.85)" print(f"--- with query condition {qc}:") print() res = arr.query(cond=qc)[:] pprint(res) if __name__ == "__main__": """Example output for `python query_condition_sparse.py`: --- without query condition: OrderedDict([('attr1', array([2, 4, 4, 3, 4, 7, 5, 2, 2, 8], dtype=uint64)), ('attr2', array([0.62445071, 0.32415481, 0.39117764, 0.66609931, 0.48122102, 0.93561984, 0.70998524, 0.10322076, 0.28343041, 0.33623958])), ('coords', array([ 1, 2, 3, 4, 5, 6, 7, 8, 9, 10], dtype=uint32))]) --- with query condition (2 < attr1 < 6) and (attr2 < 0.5 or attr2 > 0.85): OrderedDict([('attr1', array([4, 4, 4], dtype=uint64)), ('attr2', array([0.32415481, 0.39117764, 0.48122102])), ('coords', array([2, 3, 5], dtype=uint32))]) """ create_array(uri) read_array(uri)