# multi_attribute.py # # LICENSE # # The MIT License # # Copyright (c) 2020 TileDB, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # DESCRIPTION # # Please see the TileDB documentation for more information: # https://docs.tiledb.com/main/how-to/arrays/reading-arrays/multi-range-subarrays # # When run, this program will create a simple 2D dense array with two # attributes, write some data to it, and read a slice of the data back on # (i) both attributes, and (ii) subselecting on only one of the attributes. # import numpy as np import tiledb # Name of the array to create. array_name = "multi_attribute" def create_array(): # Check if the array already exists. if tiledb.object_type(array_name) == "array": return # The array will be 4x4 with dimensions "rows" and "cols", with domain [1,4]. dom = tiledb.Domain( tiledb.Dim(name="rows", domain=(1, 4), tile=4, dtype=np.int32), tiledb.Dim(name="cols", domain=(1, 4), tile=4, dtype=np.int32), ) # Add two attributes "a1" and "a2", so each (i,j) cell can store # a character on "a1" and a vector of two floats on "a2". schema = tiledb.ArraySchema( domain=dom, sparse=False, attrs=[ tiledb.Attr(name="a1", dtype=np.uint8), tiledb.Attr( name="a2", dtype=np.dtype([("", np.float32), ("", np.float32), ("", np.float32)]), ), ], ) # Create the (empty) array on disk. tiledb.DenseArray.create(array_name, schema) def write_array(): # Open the array and write to it. with tiledb.DenseArray(array_name, mode="w") as A: data_a1 = np.array( ( list( map( ord, [ "a", "b", "c", "d", "e", "f", "g", "h", "i", "j", "k", "l", "m", "n", "o", "p", ], ) ) ) ) data_a2 = np.array( ( [ (1.1, 1.2, 1.3), (2.1, 2.2, 2.3), (3.1, 3.2, 3.3), (4.1, 4.2, 4.3), (5.1, 5.2, 5.3), (6.1, 6.2, 6.3), (7.1, 7.2, 7.3), (8.1, 8.2, 8.3), (9.1, 9.2, 9.3), (10.1, 10.2, 10.3), (11.1, 11.2, 11.3), (12.1, 12.2, 12.3), (13.1, 13.2, 13.3), (14.1, 14.2, 14.3), (15.1, 15.2, 15.3), (16.1, 16.2, 16.3), ] ), dtype=[("", np.float32), ("", np.float32), ("", np.float32)], ) A[:, :] = {"a1": data_a1, "a2": data_a2} def read_array(): # Open the array and read from it. with tiledb.DenseArray(array_name, mode="r") as A: # Slice only rows 1, 2 and cols 2, 3, 4. data = A[1:3, 2:5] print("Reading both attributes a1 and a2:") a1, a2 = data["a1"].flat, data["a2"].flat for i, v in enumerate(a1): print( "a1: '%s', a2: (%.1f,%.1f,%.1f)" % (chr(v), a2[i][0], a2[i][1], a2[i][2]) ) def read_array_subselect(): # Open the array and read from it. with tiledb.DenseArray(array_name, mode="r") as A: # Slice only rows 1, 2 and cols 2, 3, 4, attribute 'a1' only. # We use the '.query()' syntax which allows attribute subselection. data = A.query(attrs=["a1"])[1:3, 2:5] print("Subselecting on attribute a1:") for a in data["a1"].flat: print("a1: '%s'" % chr(a)) create_array() write_array() read_array() read_array_subselect()