# Copyright 2020 MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import logging import os import tempfile import unittest import numpy as np import torch from parameterized import parameterized from monai.transforms import DataStatsd TEST_CASE_1 = [ { "keys": "img", "prefix": "test data", "data_shape": False, "value_range": False, "data_value": False, "additional_info": None, }, {"img": np.array([[0, 1], [1, 2]])}, "test data statistics:", ] TEST_CASE_2 = [ { "keys": "img", "prefix": "test data", "data_shape": True, "value_range": False, "data_value": False, "additional_info": None, }, {"img": np.array([[0, 1], [1, 2]])}, "test data statistics:\nShape: (2, 2)", ] TEST_CASE_3 = [ { "keys": "img", "prefix": "test data", "data_shape": True, "value_range": True, "data_value": False, "additional_info": None, }, {"img": np.array([[0, 1], [1, 2]])}, "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)", ] TEST_CASE_4 = [ { "keys": "img", "prefix": "test data", "data_shape": True, "value_range": True, "data_value": True, "additional_info": None, }, {"img": np.array([[0, 1], [1, 2]])}, "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)\nValue: [[0 1]\n [1 2]]", ] TEST_CASE_5 = [ { "keys": "img", "prefix": "test data", "data_shape": True, "value_range": True, "data_value": True, "additional_info": lambda x: np.mean(x), }, {"img": np.array([[0, 1], [1, 2]])}, "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)\nValue: [[0 1]\n [1 2]]\nAdditional info: 1.0", ] TEST_CASE_6 = [ { "keys": "img", "prefix": "test data", "data_shape": True, "value_range": True, "data_value": True, "additional_info": lambda x: torch.mean(x.float()), }, {"img": torch.tensor([[0, 1], [1, 2]])}, ( "test data statistics:\nShape: torch.Size([2, 2])\nValue range: (0, 2)\n" "Value: tensor([[0, 1],\n [1, 2]])\nAdditional info: 1.0" ), ] TEST_CASE_7 = [ { "keys": ("img", "affine"), "prefix": ("image", "affine"), "data_shape": True, "value_range": (True, False), "data_value": (False, True), "additional_info": (lambda x: np.mean(x), None), }, {"img": np.array([[0, 1], [1, 2]]), "affine": np.eye(2, 2)}, "affine statistics:\nShape: (2, 2)\nValue: [[1. 0.]\n [0. 1.]]", ] TEST_CASE_8 = [ {"img": np.array([[0, 1], [1, 2]])}, "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)\nValue: [[0 1]\n [1 2]]\nAdditional info: 1.0\n", ] class TestDataStatsd(unittest.TestCase): @parameterized.expand([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3, TEST_CASE_4, TEST_CASE_5, TEST_CASE_6, TEST_CASE_7]) def test_value(self, input_param, input_data, expected_print): transform = DataStatsd(**input_param) _ = transform(input_data) self.assertEqual(transform.printer.output, expected_print) @parameterized.expand([TEST_CASE_8]) def test_file(self, input_data, expected_print): with tempfile.TemporaryDirectory() as tempdir: filename = os.path.join(tempdir, "test_stats.log") handler = logging.FileHandler(filename, mode="w") input_param = { "keys": "img", "prefix": "test data", "data_shape": True, "value_range": True, "data_value": True, "additional_info": lambda x: np.mean(x), "logger_handler": handler, } transform = DataStatsd(**input_param) _ = transform(input_data) handler.stream.close() transform.printer._logger.removeHandler(handler) with open(filename, "r") as f: content = f.read() self.assertEqual(content, expected_print) if __name__ == "__main__": unittest.main()