:github_url: https://github.com/Project-MONAI/MONAI .. _transform_api: Transforms ========== Generic Interfaces ------------------ .. automodule:: monai.transforms .. currentmodule:: monai.transforms `Transform` ^^^^^^^^^^^ .. autoclass:: Transform :members: :special-members: __call__ `MapTransform` ^^^^^^^^^^^^^^ .. autoclass:: MapTransform :members: :special-members: __call__ `Randomizable` ^^^^^^^^^^^^^^ .. autoclass:: Randomizable :members: `Compose` ^^^^^^^^^ .. autoclass:: Compose :members: :special-members: __call__ Vanilla Transforms ------------------ Crop and Pad ^^^^^^^^^^^^ `SpatialPad` """""""""""" .. autoclass:: SpatialPad :members: :special-members: __call__ `BorderPad` """"""""""" .. autoclass:: BorderPad :members: :special-members: __call__ `DivisiblePad` """""""""""""" .. autoclass:: DivisiblePad :members: :special-members: __call__ `SpatialCrop` """"""""""""" .. autoclass:: SpatialCrop :members: :special-members: __call__ `CenterSpatialCrop` """"""""""""""""""" .. autoclass:: CenterSpatialCrop :members: :special-members: __call__ `RandSpatialCrop` """"""""""""""""" .. autoclass:: RandSpatialCrop :members: :special-members: __call__ `RandSpatialCropSamples` """""""""""""""""""""""" .. autoclass:: RandSpatialCropSamples :members: :special-members: __call__ `CropForeground` """""""""""""""" .. autoclass:: CropForeground :members: :special-members: __call__ `RandCropByPosNegLabel` """"""""""""""""""""""" .. autoclass:: RandCropByPosNegLabel :members: :special-members: __call__ Intensity ^^^^^^^^^ `RandGaussianNoise` """"""""""""""""""" .. autoclass:: RandGaussianNoise :members: :special-members: __call__ `ShiftIntensity` """""""""""""""" .. autoclass:: ShiftIntensity :members: :special-members: __call__ `RandShiftIntensity` """""""""""""""""""" .. autoclass:: RandShiftIntensity :members: :special-members: __call__ `ScaleIntensity` """""""""""""""" .. autoclass:: ScaleIntensity :members: :special-members: __call__ `RandScaleIntensity` """""""""""""""""""" .. autoclass:: RandScaleIntensity :members: :special-members: __call__ `NormalizeIntensity` """""""""""""""""""" .. autoclass:: NormalizeIntensity :members: :special-members: __call__ `ThresholdIntensity` """""""""""""""""""" .. autoclass:: ThresholdIntensity :members: :special-members: __call__ `ScaleIntensityRange` """"""""""""""""""""" .. autoclass:: ScaleIntensityRange :members: :special-members: __call__ `ScaleIntensityRangePercentiles` """""""""""""""""""""""""""""""" .. autoclass:: ScaleIntensityRangePercentiles :members: :special-members: __call__ `AdjustContrast` """""""""""""""" .. autoclass:: AdjustContrast :members: :special-members: __call__ `RandAdjustContrast` """""""""""""""""""" .. autoclass:: RandAdjustContrast :members: :special-members: __call__ `MaskIntensity` """"""""""""""" .. autoclass:: MaskIntensity :members: :special-members: __call__ `GaussianSmooth` """""""""""""""" .. autoclass:: GaussianSmooth :members: :special-members: __call__ `RandGaussianSmooth` """""""""""""""""""" .. autoclass:: RandGaussianSmooth :members: :special-members: __call__ `GaussianSharpen` """"""""""""""""" .. autoclass:: GaussianSharpen :members: :special-members: __call__ `RandGaussianSharpen` """"""""""""""""""""" .. autoclass:: RandGaussianSharpen :members: :special-members: __call__ IO ^^ `LoadImage` """"""""""" .. autoclass:: LoadImage :members: :special-members: __call__ `LoadNifti` """"""""""" .. autoclass:: LoadNifti :members: :special-members: __call__ `LoadPNG` """"""""" .. autoclass:: LoadPNG :members: :special-members: __call__ `LoadNumpy` """"""""""" .. autoclass:: LoadNumpy :members: :special-members: __call__ Post-processing ^^^^^^^^^^^^^^^ `SplitChannel` """""""""""""" .. autoclass:: SplitChannel :members: :special-members: __call__ `Activations` """"""""""""" .. autoclass:: Activations :members: :special-members: __call__ `AsDiscrete` """""""""""" .. autoclass:: AsDiscrete :members: :special-members: __call__ `KeepLargestConnectedComponent` """"""""""""""""""""""""""""""" .. autoclass:: KeepLargestConnectedComponent :members: :special-members: __call__ `LabelToContour` """""""""""""""" .. autoclass:: LabelToContour :members: :special-members: __call__ `MeanEnsemble` """""""""""""" .. autoclass:: MeanEnsemble :members: :special-members: __call__ `VoteEnsemble` """""""""""""" .. autoclass:: VoteEnsemble :members: :special-members: __call__ Spatial ^^^^^^^ `Spacing` """"""""" .. autoclass:: Spacing :members: :special-members: __call__ `Orientation` """"""""""""" .. autoclass:: Orientation :members: :special-members: __call__ `RandRotate` """""""""""" .. autoclass:: RandRotate :members: :special-members: __call__ `RandFlip` """""""""" .. autoclass:: RandFlip :members: :special-members: __call__ `RandZoom` """""""""" .. autoclass:: RandZoom :members: :special-members: __call__ `Affine` """""""" .. autoclass:: Affine :members: :special-members: __call__ `Resample` """""""""" .. autoclass:: Resample :members: :special-members: __call__ `RandAffine` """""""""""" .. autoclass:: RandAffine :members: :special-members: __call__ `RandDeformGrid` """""""""""""""" .. autoclass:: RandDeformGrid :members: :special-members: __call__ `AffineGrid` """""""""""""""" .. autoclass:: AffineGrid :members: :special-members: __call__ `RandAffineGrid` """""""""""""""" .. autoclass:: RandAffineGrid :members: :special-members: __call__ `Rand2DElastic` """"""""""""""" .. autoclass:: Rand2DElastic :members: :special-members: __call__ `Rand3DElastic` """"""""""""""" .. autoclass:: Rand3DElastic :members: :special-members: __call__ `Rotate90` """""""""" .. autoclass:: Rotate90 :members: :special-members: __call__ `RandRotate90` """""""""""""" .. autoclass:: RandRotate90 :members: :special-members: __call__ `Flip` """""" .. autoclass:: Flip :members: :special-members: __call__ `Resize` """""""" .. autoclass:: Resize :members: :special-members: __call__ `Rotate` """""""" .. autoclass:: Rotate :members: :special-members: __call__ `Zoom` """""" .. autoclass:: Zoom :members: :special-members: __call__ Utility ^^^^^^^ `Identity` """""""""" .. autoclass:: Identity :members: :special-members: __call__ `AsChannelFirst` """""""""""""""" .. autoclass:: AsChannelFirst :members: :special-members: __call__ `AsChannelLast` """"""""""""""" .. autoclass:: AsChannelLast :members: :special-members: __call__ `AddChannel` """""""""""" .. autoclass:: AddChannel :members: :special-members: __call__ `RepeatChannel` """"""""""""""" .. autoclass:: RepeatChannel :members: :special-members: __call__ `CastToType` """""""""""" .. autoclass:: CastToType :members: :special-members: __call__ `ToTensor` """""""""" .. autoclass:: ToTensor :members: :special-members: __call__ `ToNumpy` """"""""" .. autoclass:: ToNumpy :members: :special-members: __call__ `Transpose` """"""""""" .. autoclass:: Transpose :members: :special-members: __call__ `SqueezeDim` """""""""""" .. autoclass:: SqueezeDim :members: :special-members: __call__ `DataStats` """"""""""" .. autoclass:: DataStats :members: :special-members: __call__ `SimulateDelay` """"""""""""""" .. autoclass:: SimulateDelay :members: :special-members: __call__ `Lambda` """""""" .. autoclass:: Lambda :members: :special-members: __call__ `LabelToMask` """"""""""""" .. autoclass:: LabelToMask :members: :special-members: __call__ `FgBgToIndices` """"""""""""""" .. autoclass:: FgBgToIndices :members: :special-members: __call__ Dictionary Transforms --------------------- Crop and Pad (Dict) ^^^^^^^^^^^^^^^^^^^ `SpatialPadd` """"""""""""" .. autoclass:: SpatialPadd :members: :special-members: __call__ `BorderPadd` """""""""""" .. autoclass:: BorderPadd :members: :special-members: __call__ `DivisiblePadd` """"""""""""""" .. autoclass:: DivisiblePadd :members: :special-members: __call__ `SpatialCropd` """""""""""""" .. autoclass:: SpatialCropd :members: :special-members: __call__ `CenterSpatialCropd` """""""""""""""""""" .. autoclass:: CenterSpatialCropd :members: :special-members: __call__ `RandSpatialCropd` """""""""""""""""" .. autoclass:: RandSpatialCropd :members: :special-members: __call__ `RandSpatialCropSamplesd` """"""""""""""""""""""""" .. autoclass:: RandSpatialCropSamplesd :members: :special-members: __call__ `CropForegroundd` """"""""""""""""" .. autoclass:: CropForegroundd :members: :special-members: __call__ `RandCropByPosNegLabeld` """""""""""""""""""""""" .. autoclass:: RandCropByPosNegLabeld :members: :special-members: __call__ Instensity (Dict) ^^^^^^^^^^^^^^^^^ `RandGaussianNoised` """""""""""""""""""" .. autoclass:: RandGaussianNoised :members: :special-members: __call__ `ShiftIntensityd` """"""""""""""""" .. autoclass:: ShiftIntensityd :members: :special-members: __call__ `RandShiftIntensityd` """"""""""""""""""""" .. autoclass:: RandShiftIntensityd :members: :special-members: __call__ `ScaleIntensityd` """"""""""""""""" .. autoclass:: ScaleIntensityd :members: :special-members: __call__ `RandScaleIntensityd` """"""""""""""""""""" .. autoclass:: RandScaleIntensityd :members: :special-members: __call__ `NormalizeIntensityd` """"""""""""""""""""" .. autoclass:: NormalizeIntensityd :members: :special-members: __call__ `ThresholdIntensityd` """"""""""""""""""""" .. autoclass:: ThresholdIntensityd :members: :special-members: __call__ `ScaleIntensityRanged` """""""""""""""""""""" .. autoclass:: ScaleIntensityRanged :members: :special-members: __call__ `ScaleIntensityRangePercentilesd` """"""""""""""""""""""""""""""""" .. autoclass:: ScaleIntensityRangePercentilesd :members: :special-members: __call__ `AdjustContrastd` """"""""""""""""" .. autoclass:: AdjustContrastd :members: :special-members: __call__ `RandAdjustContrastd` """"""""""""""""""""" .. autoclass:: RandAdjustContrastd :members: :special-members: __call__ `MaskIntensityd` """""""""""""""" .. autoclass:: MaskIntensityd :members: :special-members: __call__ `GaussianSmoothd` """"""""""""""""" .. autoclass:: GaussianSmoothd :members: :special-members: __call__ `RandGaussianSmoothd` """"""""""""""""""""" .. autoclass:: RandGaussianSmoothd :members: :special-members: __call__ `GaussianSharpend` """""""""""""""""" .. autoclass:: GaussianSharpend :members: :special-members: __call__ `RandGaussianSharpend` """""""""""""""""""""" .. autoclass:: RandGaussianSharpend :members: :special-members: __call__ IO (Dict) ^^^^^^^^^ `LoadDatad` """"""""""" .. autoclass:: LoadDatad :members: :special-members: __call__ `LoadImaged` """""""""""" .. autoclass:: LoadImaged :members: :special-members: __call__ `LoadNiftid` """""""""""" .. autoclass:: LoadNiftid :members: :special-members: __call__ `LoadPNGd` """""""""" .. autoclass:: LoadPNGd :members: :special-members: __call__ `LoadNumpyd` """""""""""" .. autoclass:: LoadNumpyd :members: :special-members: __call__ Post-processing (Dict) ^^^^^^^^^^^^^^^^^^^^^^ `SplitChanneld` """"""""""""""" .. autoclass:: SplitChanneld :members: :special-members: __call__ `Activationsd` """""""""""""" .. autoclass:: Activationsd :members: :special-members: __call__ `AsDiscreted` """"""""""""" .. autoclass:: AsDiscreted :members: :special-members: __call__ `KeepLargestConnectedComponentd` """""""""""""""""""""""""""""""" .. autoclass:: KeepLargestConnectedComponentd :members: :special-members: __call__ `LabelToContourd` """"""""""""""""" .. autoclass:: LabelToContourd :members: :special-members: __call__ `Ensembled` """"""""""" .. autoclass:: Ensembled :members: :special-members: __call__ `MeanEnsembled` """"""""""""""" .. autoclass:: MeanEnsembled :members: :special-members: __call__ `VoteEnsembled` """"""""""""""" .. autoclass:: VoteEnsembled :members: :special-members: __call__ Spatial (Dict) ^^^^^^^^^^^^^^ `Spacingd` """""""""" .. autoclass:: Spacingd :members: :special-members: __call__ `Orientationd` """""""""""""" .. autoclass:: Orientationd :members: :special-members: __call__ `Flipd` """"""" .. autoclass:: Flipd :members: :special-members: __call__ `RandFlipd` """"""""""" .. autoclass:: RandFlipd :members: :special-members: __call__ `Rotated` """"""""" .. autoclass:: Rotated :members: :special-members: __call__ `RandRotated` """"""""""""" .. autoclass:: RandRotated :members: :special-members: __call__ `Zoomd` """"""" .. autoclass:: Zoomd :members: :special-members: __call__ `RandZoomd` """"""""""" .. autoclass:: RandZoomd :members: :special-members: __call__ `RandRotate90d` """"""""""""""" .. autoclass:: RandRotate90d :members: :special-members: __call__ `Rotate90d` """"""""""" .. autoclass:: Rotate90d :members: :special-members: __call__ `Resized` """"""""" .. autoclass:: Resized :members: :special-members: __call__ `RandAffined` """"""""""""" .. autoclass:: RandAffined :members: :special-members: __call__ `Rand2DElasticd` """""""""""""""" .. autoclass:: Rand2DElasticd :members: :special-members: __call__ `Rand3DElasticd` """""""""""""""" .. autoclass:: Rand3DElasticd :members: :special-members: __call__ Utility (Dict) ^^^^^^^^^^^^^^ `Identityd` """"""""""" .. autoclass:: Identityd :members: :special-members: __call__ `AsChannelFirstd` """"""""""""""""" .. autoclass:: AsChannelFirstd :members: :special-members: __call__ `AsChannelLastd` """""""""""""""" .. autoclass:: AsChannelLastd :members: :special-members: __call__ `AddChanneld` """"""""""""" .. autoclass:: AddChanneld :members: :special-members: __call__ `RepeatChanneld` """""""""""""""" .. autoclass:: RepeatChanneld :members: :special-members: __call__ `CastToTyped` """"""""""""" .. autoclass:: CastToTyped :members: :special-members: __call__ `ToTensord` """"""""""" .. autoclass:: ToTensord :members: :special-members: __call__ `ToNumpyd` """""""""" .. autoclass:: ToNumpyd :members: :special-members: __call__ `DeleteItemsd` """""""""""""" .. autoclass:: DeleteItemsd :members: :special-members: __call__ `SqueezeDimd` """"""""""""" .. autoclass:: SqueezeDimd :members: :special-members: __call__ `DataStatsd` """""""""""" .. autoclass:: DataStatsd :members: :special-members: __call__ `SimulateDelayd` """""""""""""""" .. autoclass:: SimulateDelayd :members: :special-members: __call__ `CopyItemsd` """""""""""" .. autoclass:: CopyItemsd :members: :special-members: __call__ `ConcatItemsd` """""""""""""" .. autoclass:: ConcatItemsd :members: :special-members: __call__ `Lambdad` """"""""" .. autoclass:: Lambdad :members: :special-members: __call__ `LabelToMaskd` """""""""""""" .. autoclass:: LabelToMaskd :members: :special-members: __call__ `FgBgToIndicesd` """""""""""""""" .. autoclass:: FgBgToIndicesd :members: :special-members: __call__ Transform Adaptors ------------------ .. automodule:: monai.transforms.adaptors `adaptor` ^^^^^^^^^ .. autofunction:: monai.transforms.adaptors.adaptor `apply_alias` ^^^^^^^^^^^^^ .. autofunction:: monai.transforms.adaptors.apply_alias `to_kwargs` ^^^^^^^^^^^ .. autofunction:: monai.transforms.adaptors.to_kwargs Utilities --------- .. automodule:: monai.transforms.utils :members: