testbed/deepset-ai__haystack/haystack/components/preprocessors/document_cleaner.py

# SPDX-FileCopyrightText: 2022-present deepset GmbH <info@deepset.ai>
#
# SPDX-License-Identifier: Apache-2.0

import re
from copy import deepcopy
from functools import partial, reduce
from itertools import chain
from typing import Generator, List, Literal, Optional, Set
from unicodedata import normalize

from haystack import Document, component, logging

logger = logging.getLogger(__name__)


@component
class DocumentCleaner:
    """
    Cleans the text in the documents.

    It removes extra whitespaces,
    empty lines, specified substrings, regexes,
    page headers and footers (in this order).

    ### Usage example:

    ```python
    from haystack import Document
    from haystack.components.preprocessors import DocumentCleaner

    doc = Document(content="This   is  a  document  to  clean\\n\\n\\nsubstring to remove")

    cleaner = DocumentCleaner(remove_substrings = ["substring to remove"])
    result = cleaner.run(documents=[doc])

    assert result["documents"][0].content == "This is a document to clean "
    ```
    """

    def __init__(
        self,
        remove_empty_lines: bool = True,
        remove_extra_whitespaces: bool = True,
        remove_repeated_substrings: bool = False,
        keep_id: bool = False,
        remove_substrings: Optional[List[str]] = None,
        remove_regex: Optional[str] = None,
        unicode_normalization: Optional[Literal["NFC", "NFKC", "NFD", "NFKD"]] = None,
        ascii_only: bool = False,
    ):
        """
        Initialize DocumentCleaner.

        :param remove_empty_lines: If `True`, removes empty lines.
        :param remove_extra_whitespaces: If `True`, removes extra whitespaces.
        :param remove_repeated_substrings: If `True`, removes repeated substrings (headers and footers) from pages.
            Pages must be separated by a form feed character "\\f",
            which is supported by `TextFileToDocument` and `AzureOCRDocumentConverter`.
        :param remove_substrings: List of substrings to remove from the text.
        :param remove_regex: Regex to match and replace substrings by "".
        :param keep_id: If `True`, keeps the IDs of the original documents.
        :param unicode_normalization: Unicode normalization form to apply to the text.
            Note: This will run before any other steps.
        :param ascii_only: Whether to convert the text to ASCII only.
            Will remove accents from characters and replace them with ASCII characters.
            Other non-ASCII characters will be removed.
            Note: This will run before any pattern matching or removal.
        """

        self._validate_params(unicode_normalization=unicode_normalization)

        self.remove_empty_lines = remove_empty_lines
        self.remove_extra_whitespaces = remove_extra_whitespaces
        self.remove_repeated_substrings = remove_repeated_substrings
        self.remove_substrings = remove_substrings
        self.remove_regex = remove_regex
        self.keep_id = keep_id
        self.unicode_normalization = unicode_normalization
        self.ascii_only = ascii_only

    def _validate_params(self, unicode_normalization: Optional[str]):
        """
        Validate the parameters of the DocumentCleaner.

        :param unicode_normalization: Unicode normalization form to apply to the text.
        :raises ValueError: if the parameters are not valid.
        """
        if unicode_normalization and unicode_normalization not in ["NFC", "NFKC", "NFD", "NFKD"]:
            raise ValueError("unicode_normalization must be one of 'NFC', 'NFKC', 'NFD', 'NFKD'.")

    @component.output_types(documents=List[Document])
    def run(self, documents: List[Document]):
        """
        Cleans up the documents.

        :param documents: List of Documents to clean.

        :returns: A dictionary with the following key:
            - `documents`: List of cleaned Documents.

        :raises TypeError: if documents is not a list of Documents.
        """
        if not isinstance(documents, list) or documents and not isinstance(documents[0], Document):
            raise TypeError("DocumentCleaner expects a List of Documents as input.")

        cleaned_docs = []
        for doc in documents:
            if doc.content is None:
                logger.warning(
                    "DocumentCleaner only cleans text documents but document.content for document ID"
                    " %{document_id} is None.",
                    document_id=doc.id,
                )
                cleaned_docs.append(doc)
                continue
            text = doc.content

            if self.unicode_normalization:
                text = self._normalize_unicode(text, self.unicode_normalization)
            if self.ascii_only:
                text = self._ascii_only(text)
            if self.remove_extra_whitespaces:
                text = self._remove_extra_whitespaces(text)
            if self.remove_empty_lines:
                text = self._remove_empty_lines(text)
            if self.remove_substrings:
                text = self._remove_substrings(text, self.remove_substrings)
            if self.remove_regex:
                text = self._remove_regex(text, self.remove_regex)
            if self.remove_repeated_substrings:
                text = self._remove_repeated_substrings(text)

            cleaned_docs.append(Document(content=text, meta=deepcopy(doc.meta), id=doc.id if self.keep_id else ""))

        return {"documents": cleaned_docs}

    def _normalize_unicode(self, text: str, form: Literal["NFC", "NFKC", "NFD", "NFKD"]) -> str:
        """
        Normalize the unicode of the text.

        :param text: Text to normalize.
        :param form: Unicode normalization form to apply to the text.
            Options: "NFC", "NFKC", "NFD", "NFKD".
        :returns: The normalized text.
        """
        return normalize(form, text)

    def _ascii_only(self, text: str) -> str:
        """
        Convert the text to ASCII only.

        Will remove accents from characters and replace them with ASCII characters.
        Other non-ASCII characters will be removed.

        :param text: Text to convert to ASCII only.
        :returns: The text in ASCII only.
        """

        # First normalize the text to NFKD to separate the characters and their diacritics
        # Then encode it to ASCII and ignore any characters that can't be encoded
        return self._normalize_unicode(text, "NFKD").encode("ascii", "ignore").decode("utf-8")

    def _remove_empty_lines(self, text: str) -> str:
        """
        Remove empty lines and lines that contain nothing but whitespaces from text.

        :param text: Text to clean.
        :returns: The text without empty lines.
        """
        pages = text.split("\f")
        cleaned_pages = ["\n".join(line for line in page.split("\n") if line.strip()) for page in pages]
        return "\f".join(cleaned_pages)

    def _remove_extra_whitespaces(self, text: str) -> str:
        """
        Remove extra whitespaces from text.

        :param text: Text to clean.
        :returns: The text without extra whitespaces.
        """
        texts = text.split("\f")
        cleaned_text = [re.sub(r"\s\s+", " ", text).strip() for text in texts]
        return "\f".join(cleaned_text)

    def _remove_regex(self, text: str, regex: str) -> str:
        """
        Remove substrings that match the specified regex from the text.

        :param text: Text to clean.
        :param regex: Regex to match and replace substrings by "".
        :returns: The text without the substrings that match the regex.
        """
        texts = text.split("\f")
        cleaned_text = [re.sub(regex, "", text).strip() for text in texts]
        return "\f".join(cleaned_text)

    def _remove_substrings(self, text: str, substrings: List[str]) -> str:
        """
        Remove all specified substrings from the text.

        :param text: Text to clean.
        :param substrings: Substrings to remove.
        :returns: The text without the specified substrings.
        """
        for substring in substrings:
            text = text.replace(substring, "")
        return text

    def _remove_repeated_substrings(self, text: str) -> str:
        """
        Remove any substrings from the text that occur repeatedly on every page. For example headers or footers.

        Pages in the text need to be separated by form feed character "\f".
        :param text: Text to clean.
        :returns: The text without the repeated substrings.
        """
        return self._find_and_remove_header_footer(
            text, n_chars=300, n_first_pages_to_ignore=1, n_last_pages_to_ignore=1
        )

    def _find_and_remove_header_footer(
        self, text: str, n_chars: int, n_first_pages_to_ignore: int, n_last_pages_to_ignore: int
    ) -> str:
        """
        Heuristic to find footers and headers across different pages by searching for the longest common string.

        Pages in the text need to be separated by form feed character "\f".
        For headers, we only search in the first n_chars characters (for footer: last n_chars).
        Note: This heuristic uses exact matches and therefore works well for footers like "Copyright 2019 by XXX",
         but won't detect "Page 3 of 4" or similar.

        :param n_chars: The number of first/last characters where the header/footer shall be searched in.
        :param n_first_pages_to_ignore: The number of first pages to ignore
            (e.g. TOCs often don't contain footer/header).
        :param n_last_pages_to_ignore: The number of last pages to ignore.
        :returns: The text without the found headers and footers.
        """

        pages = text.split("\f")

        # header
        start_of_pages = [p[:n_chars] for p in pages[n_first_pages_to_ignore:-n_last_pages_to_ignore]]
        found_header = self._find_longest_common_ngram(start_of_pages)
        if found_header:
            pages = [page.replace(found_header, "") for page in pages]

        # footer
        end_of_pages = [p[-n_chars:] for p in pages[n_first_pages_to_ignore:-n_last_pages_to_ignore]]
        found_footer = self._find_longest_common_ngram(end_of_pages)
        if found_footer:
            pages = [page.replace(found_footer, "") for page in pages]

        logger.debug(
            "Removed header '{header}' and footer '{footer}' in document", header=found_header, footer=found_footer
        )
        text = "\f".join(pages)
        return text

    def _ngram(self, seq: str, n: int) -> Generator[str, None, None]:
        """
        Return all ngrams of length n from a text sequence. Each ngram consists of n words split by whitespace.

        :param seq: The sequence to generate ngrams from.
        :param n: The length of the ngrams to generate.
        :returns: A Generator generating all ngrams of length n from the given sequence.
        """

        # In order to maintain the original whitespace, but still consider \n and \t for n-gram tokenization,
        # we add a space here and remove it after creation of the ngrams again (see below)
        seq = seq.replace("\n", " \n")
        seq = seq.replace("\t", " \t")

        words = seq.split(" ")
        ngrams = (
            " ".join(words[i : i + n]).replace(" \n", "\n").replace(" \t", "\t") for i in range(0, len(words) - n + 1)
        )

        return ngrams

    def _allngram(self, seq: str, min_ngram: int, max_ngram: int) -> Set[str]:
        """
        Generates all possible ngrams from a given sequence of text.

        Considering all ngram lengths between the minimum and maximum length.

        :param seq: The sequence to generate ngrams from.
        :param min_ngram: The minimum length of ngram to consider.
        :param max_ngram: The maximum length of ngram to consider.
        :returns: A set of all ngrams from the given sequence.
        """
        lengths = range(min_ngram, max_ngram) if max_ngram else range(min_ngram, len(seq))
        ngrams = map(partial(self._ngram, seq), lengths)
        res = set(chain.from_iterable(ngrams))
        return res

    def _find_longest_common_ngram(self, sequences: List[str], min_ngram: int = 3, max_ngram: int = 30) -> str:
        """
        Find the longest common ngram across a list of text sequences (e.g. start of pages).

        Considering all ngram lengths between the minimum and maximum length. Helpful for finding footers, headers etc.
        Empty sequences are ignored.

        :param sequences: The list of strings that shall be searched for common n_grams.
        :param max_ngram: The maximum length of ngram to consider.
        :param min_ngram: The minimum length of ngram to consider.
        :returns: The longest ngram that all sequences have in common.
        """
        sequences = [s for s in sequences if s]  # filter empty sequences
        if not sequences:
            return ""
        seqs_ngrams = map(partial(self._allngram, min_ngram=min_ngram, max_ngram=max_ngram), sequences)
        intersection = reduce(set.intersection, seqs_ngrams)

        longest = max(intersection, key=len, default="")
        return longest if longest.strip() else ""