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| | import os |
| | import tempfile |
| | import unittest |
| |
|
| | import nibabel as nib |
| | import numpy as np |
| | from parameterized import parameterized |
| |
|
| | from monai.data import CacheDataset |
| | from monai.transforms import Compose, LoadNiftid |
| |
|
| | TEST_CASE_1 = [0, 100, Compose([LoadNiftid(keys=["image", "label", "extra"])])] |
| |
|
| | TEST_CASE_2 = [4, 100, Compose([LoadNiftid(keys=["image", "label", "extra"])])] |
| |
|
| | TEST_CASE_3 = [4, 100, None] |
| |
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| |
|
| | class TestCacheDatasetParallel(unittest.TestCase): |
| | @parameterized.expand([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3]) |
| | def test_shape(self, num_workers, dataset_size, transform): |
| | test_image = nib.Nifti1Image(np.random.randint(0, 2, size=[128, 128, 128]), np.eye(4)) |
| | with tempfile.TemporaryDirectory() as tempdir: |
| | nib.save(test_image, os.path.join(tempdir, "test_image1.nii.gz")) |
| | nib.save(test_image, os.path.join(tempdir, "test_label1.nii.gz")) |
| | nib.save(test_image, os.path.join(tempdir, "test_extra1.nii.gz")) |
| | test_data = [ |
| | { |
| | "image": os.path.join(tempdir, "test_image1.nii.gz"), |
| | "label": os.path.join(tempdir, "test_label1.nii.gz"), |
| | "extra": os.path.join(tempdir, "test_extra1.nii.gz"), |
| | } |
| | ] * dataset_size |
| | dataset = CacheDataset( |
| | data=test_data, |
| | transform=transform, |
| | cache_rate=1, |
| | num_workers=num_workers, |
| | ) |
| |
|
| | self.assertEqual(len(dataset._cache), dataset.cache_num) |
| | for i in range(dataset.cache_num): |
| | self.assertIsNotNone(dataset._cache[i]) |
| |
|
| |
|
| | if __name__ == "__main__": |
| | unittest.main() |
| |
|