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2020 2021 2022 2023 2024 2025 2026 2027 2028 2029 2030 2031 2032 2033 2034 2035 2036 2037 2038 2039 2040 2041 2042 2043 2044 2045 2046 2047 2048 2049 | # Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
"""This module configures the SageMaker Clarify bias and model explainability processor jobs.
SageMaker Clarify
==================
"""
from __future__ import absolute_import, print_function
import copy
import json
import logging
import os
import re
import tempfile
from abc import ABC, abstractmethod
from typing import List, Union, Dict, Optional, Any
from schema import Schema, And, Use, Or, Optional as SchemaOptional, Regex
from sagemaker import image_uris, s3, utils
from sagemaker.session import Session
from sagemaker.network import NetworkConfig
from sagemaker.processing import ProcessingInput, ProcessingOutput, Processor
logger = logging.getLogger(__name__)
ENDPOINT_NAME_PREFIX_PATTERN = "^[a-zA-Z0-9](-*[a-zA-Z0-9])"
ANALYSIS_CONFIG_SCHEMA_V1_0 = Schema(
{
SchemaOptional("version"): str,
"dataset_type": And(
str,
Use(str.lower),
lambda s: s
in (
"text/csv",
"application/jsonlines",
"application/sagemakercapturejson",
"application/x-parquet",
"application/x-image",
),
),
SchemaOptional("dataset_uri"): str,
SchemaOptional("headers"): [str],
SchemaOptional("label"): Or(str, int),
# this field indicates user provides predicted_label in dataset
SchemaOptional("predicted_label"): Or(str, int),
SchemaOptional("features"): str,
SchemaOptional("label_values_or_threshold"): [Or(int, float, str)],
SchemaOptional("probability_threshold"): float,
SchemaOptional("facet"): [
{
"name_or_index": Or(str, int),
SchemaOptional("value_or_threshold"): [Or(int, float, str)],
}
],
SchemaOptional("facet_dataset_uri"): str,
SchemaOptional("facet_headers"): [str],
SchemaOptional("predicted_label_dataset_uri"): str,
SchemaOptional("predicted_label_headers"): [str],
SchemaOptional("excluded_columns"): [Or(int, str)],
SchemaOptional("joinsource_name_or_index"): Or(str, int),
SchemaOptional("group_variable"): Or(str, int),
"methods": {
SchemaOptional("shap"): {
SchemaOptional("baseline"): Or(
# URI of the baseline data file
str,
# Inplace baseline data (a list of something)
[
Or(
# CSV row
[Or(int, float, str, None)],
# JSON row (any JSON object). As I write this only
# SageMaker JSONLines Dense Format ([1])
# is supported and the validation is NOT done
# by the schema but by the data loader.
# [1] https://docs.aws.amazon.com/sagemaker/latest/dg/cdf-inference.html#cm-jsonlines
{object: object},
)
],
),
SchemaOptional("num_clusters"): int,
SchemaOptional("use_logit"): bool,
SchemaOptional("num_samples"): int,
SchemaOptional("agg_method"): And(
str, Use(str.lower), lambda s: s in ("mean_abs", "median", "mean_sq")
),
SchemaOptional("save_local_shap_values"): bool,
SchemaOptional("text_config"): {
"granularity": And(
str, Use(str.lower), lambda s: s in ("token", "sentence", "paragraph")
),
"language": And(
str,
Use(str.lower),
lambda s: s
in (
"chinese",
"zh",
"danish",
"da",
"dutch",
"nl",
"english",
"en",
"french",
"fr",
"german",
"de",
"greek",
"el",
"italian",
"it",
"japanese",
"ja",
"lithuanian",
"lt",
"multi-language",
"xx",
"norwegian bokmål",
"nb",
"polish",
"pl",
"portuguese",
"pt",
"romanian",
"ro",
"russian",
"ru",
"spanish",
"es",
"afrikaans",
"af",
"albanian",
"sq",
"arabic",
"ar",
"armenian",
"hy",
"basque",
"eu",
"bengali",
"bn",
"bulgarian",
"bg",
"catalan",
"ca",
"croatian",
"hr",
"czech",
"cs",
"estonian",
"et",
"finnish",
"fi",
"gujarati",
"gu",
"hebrew",
"he",
"hindi",
"hi",
"hungarian",
"hu",
"icelandic",
"is",
"indonesian",
"id",
"irish",
"ga",
"kannada",
"kn",
"kyrgyz",
"ky",
"latvian",
"lv",
"ligurian",
"lij",
"luxembourgish",
"lb",
"macedonian",
"mk",
"malayalam",
"ml",
"marathi",
"mr",
"nepali",
"ne",
"persian",
"fa",
"sanskrit",
"sa",
"serbian",
"sr",
"setswana",
"tn",
"sinhala",
"si",
"slovak",
"sk",
"slovenian",
"sl",
"swedish",
"sv",
"tagalog",
"tl",
"tamil",
"ta",
"tatar",
"tt",
"telugu",
"te",
"thai",
"th",
"turkish",
"tr",
"ukrainian",
"uk",
"urdu",
"ur",
"vietnamese",
"vi",
"yoruba",
"yo",
),
),
SchemaOptional("max_top_tokens"): int,
},
SchemaOptional("image_config"): {
SchemaOptional("num_segments"): int,
SchemaOptional("segment_compactness"): int,
SchemaOptional("feature_extraction_method"): str,
SchemaOptional("model_type"): str,
SchemaOptional("max_objects"): int,
SchemaOptional("iou_threshold"): float,
SchemaOptional("context"): float,
SchemaOptional("debug"): {
SchemaOptional("image_names"): [str],
SchemaOptional("class_ids"): [int],
SchemaOptional("sample_from"): int,
SchemaOptional("sample_to"): int,
},
},
SchemaOptional("seed"): int,
},
SchemaOptional("pre_training_bias"): {"methods": Or(str, [str])},
SchemaOptional("post_training_bias"): {"methods": Or(str, [str])},
SchemaOptional("pdp"): {
"grid_resolution": int,
SchemaOptional("features"): [Or(str, int)],
SchemaOptional("top_k_features"): int,
},
SchemaOptional("report"): {"name": str, SchemaOptional("title"): str},
},
SchemaOptional("predictor"): {
SchemaOptional("endpoint_name"): str,
SchemaOptional("endpoint_name_prefix"): And(str, Regex(ENDPOINT_NAME_PREFIX_PATTERN)),
SchemaOptional("model_name"): str,
SchemaOptional("target_model"): str,
SchemaOptional("instance_type"): str,
SchemaOptional("initial_instance_count"): int,
SchemaOptional("accelerator_type"): str,
SchemaOptional("content_type"): And(
str,
Use(str.lower),
lambda s: s
in (
"text/csv",
"application/jsonlines",
"image/jpeg",
"image/jpg",
"image/png",
"application/x-npy",
),
),
SchemaOptional("accept_type"): And(
str,
Use(str.lower),
lambda s: s in ("text/csv", "application/jsonlines", "application/json"),
),
SchemaOptional("label"): Or(str, int),
SchemaOptional("probability"): Or(str, int),
SchemaOptional("label_headers"): [Or(str, int)],
SchemaOptional("content_template"): Or(str, {str: str}),
SchemaOptional("custom_attributes"): str,
},
}
)
class DataConfig:
"""Config object related to configurations of the input and output dataset."""
def __init__(
self,
s3_data_input_path: str,
s3_output_path: str,
s3_analysis_config_output_path: Optional[str] = None,
label: Optional[str] = None,
headers: Optional[List[str]] = None,
features: Optional[List[str]] = None,
dataset_type: str = "text/csv",
s3_compression_type: str = "None",
joinsource: Optional[Union[str, int]] = None,
facet_dataset_uri: Optional[str] = None,
facet_headers: Optional[List[str]] = None,
predicted_label_dataset_uri: Optional[str] = None,
predicted_label_headers: Optional[List[str]] = None,
predicted_label: Optional[Union[str, int]] = None,
excluded_columns: Optional[Union[List[int], List[str]]] = None,
):
"""Initializes a configuration of both input and output datasets.
Args:
s3_data_input_path (str): Dataset S3 prefix/object URI.
s3_output_path (str): S3 prefix to store the output.
s3_analysis_config_output_path (str): S3 prefix to store the analysis config output.
If this field is None, then the ``s3_output_path`` will be used
to store the ``analysis_config`` output.
label (str): Target attribute of the model required by bias metrics.
Specified as column name or index for CSV dataset or as JSONPath for JSONLines.
*Required parameter* except for when the input dataset does not contain the label.
features (List[str]): JSONPath for locating the feature columns for bias metrics if the
dataset format is JSONLines.
dataset_type (str): Format of the dataset. Valid values are ``"text/csv"`` for CSV,
``"application/jsonlines"`` for JSONLines, and
``"application/x-parquet"`` for Parquet.
s3_compression_type (str): Valid options are "None" or ``"Gzip"``.
joinsource (str or int): The name or index of the column in the dataset that
acts as an identifier column (for instance, while performing a join).
This column is only used as an identifier, and not used for any other computations.
This is an optional field in all cases except:
* The dataset contains more than one file and `save_local_shap_values`
is set to true in :class:`~sagemaker.clarify.ShapConfig`, and/or
* When the dataset and/or facet dataset and/or predicted label dataset
are in separate files.
facet_dataset_uri (str): Dataset S3 prefix/object URI that contains facet attribute(s),
used for bias analysis on datasets without facets.
* If the dataset and the facet dataset are one single file each, then
the original dataset and facet dataset must have the same number of rows.
* If the dataset and facet dataset are in multiple files (either one), then
an index column, ``joinsource``, is required to join the two datasets.
Clarify will not use the ``joinsource`` column and columns present in the facet
dataset when calling model inference APIs.
facet_headers (list[str]): List of column names in the facet dataset.
predicted_label_dataset_uri (str): Dataset S3 prefix/object URI with predicted labels,
which are used directly for analysis instead of making model inference API calls.
* If the dataset and the predicted label dataset are one single file each, then the
original dataset and predicted label dataset must have the same number of rows.
* If the dataset and predicted label dataset are in multiple files (either one),
then an index column, ``joinsource``, is required to join the two datasets.
predicted_label_headers (list[str]): List of column names in the predicted label dataset
predicted_label (str or int): Predicted label of the target attribute of the model
required for running bias analysis. Specified as column name or index for CSV data.
Clarify uses the predicted labels directly instead of making model inference API
calls.
excluded_columns (list[int] or list[str]): A list of names or indices of the columns
which are to be excluded from making model inference API calls.
Raises:
ValueError: when the ``dataset_type`` is invalid, predicted label dataset parameters
are used with un-supported ``dataset_type``, or facet dataset parameters
are used with un-supported ``dataset_type``
"""
if dataset_type not in [
"text/csv",
"application/jsonlines",
"application/x-parquet",
"application/x-image",
]:
raise ValueError(
f"Invalid dataset_type '{dataset_type}'."
f" Please check the API documentation for the supported dataset types."
)
# parameters for analysis on datasets without facets are only supported for CSV datasets
if dataset_type != "text/csv":
if predicted_label:
raise ValueError(
f"The parameter 'predicted_label' is not supported"
f" for dataset_type '{dataset_type}'."
f" Please check the API documentation for the supported dataset types."
)
if excluded_columns:
raise ValueError(
f"The parameter 'excluded_columns' is not supported"
f" for dataset_type '{dataset_type}'."
f" Please check the API documentation for the supported dataset types."
)
if facet_dataset_uri or facet_headers:
raise ValueError(
f"The parameters 'facet_dataset_uri' and 'facet_headers'"
f" are not supported for dataset_type '{dataset_type}'."
f" Please check the API documentation for the supported dataset types."
)
if predicted_label_dataset_uri or predicted_label_headers:
raise ValueError(
f"The parameters 'predicted_label_dataset_uri' and 'predicted_label_headers'"
f" are not supported for dataset_type '{dataset_type}'."
f" Please check the API documentation for the supported dataset types."
)
self.s3_data_input_path = s3_data_input_path
self.s3_output_path = s3_output_path
self.s3_analysis_config_output_path = s3_analysis_config_output_path
self.s3_data_distribution_type = "FullyReplicated"
self.s3_compression_type = s3_compression_type
self.label = label
self.headers = headers
self.features = features
self.facet_dataset_uri = facet_dataset_uri
self.facet_headers = facet_headers
self.predicted_label_dataset_uri = predicted_label_dataset_uri
self.predicted_label_headers = predicted_label_headers
self.predicted_label = predicted_label
self.excluded_columns = excluded_columns
self.analysis_config = {
"dataset_type": dataset_type,
}
_set(features, "features", self.analysis_config)
_set(headers, "headers", self.analysis_config)
_set(label, "label", self.analysis_config)
_set(joinsource, "joinsource_name_or_index", self.analysis_config)
_set(facet_dataset_uri, "facet_dataset_uri", self.analysis_config)
_set(facet_headers, "facet_headers", self.analysis_config)
_set(
predicted_label_dataset_uri,
"predicted_label_dataset_uri",
self.analysis_config,
)
_set(predicted_label_headers, "predicted_label_headers", self.analysis_config)
_set(predicted_label, "predicted_label", self.analysis_config)
_set(excluded_columns, "excluded_columns", self.analysis_config)
def get_config(self):
"""Returns part of an analysis config dictionary."""
return copy.deepcopy(self.analysis_config)
class BiasConfig:
"""Config object with user-defined bias configurations of the input dataset."""
def __init__(
self,
label_values_or_threshold: Union[int, float, str],
facet_name: Union[str, int, List[str], List[int]],
facet_values_or_threshold: Optional[Union[int, float, str]] = None,
group_name: Optional[str] = None,
):
"""Initializes a configuration of the sensitive groups in the dataset.
Args:
label_values_or_threshold ([int or float or str]): List of label value(s) or threshold
to indicate positive outcome used for bias metrics.
The appropriate threshold depends on the problem type:
* Binary: The list has one positive value.
* Categorical:The list has one or more (but not all) categories
which are the positive values.
* Regression: The list should include one threshold that defines the **exclusive**
lower bound of positive values.
facet_name (str or int or list[str] or list[int]): Sensitive attribute column name
(or index in the input data) to use when computing bias metrics. It can also be a
list of names (or indexes) for computing metrics for multiple sensitive attributes.
facet_values_or_threshold ([int or float or str] or [[int or float or str]]):
The parameter controls the values of the sensitive group.
If ``facet_name`` is a scalar, then it can be None or a list.
Depending on the data type of the facet column, the values mean:
* Binary data: None means computing the bias metrics for each binary value.
Or add one binary value to the list, to compute its bias metrics only.
* Categorical data: None means computing the bias metrics for each category. Or add
one or more (but not all) categories to the list, to compute their
bias metrics v.s. the other categories.
* Continuous data: The list should include one and only one threshold which defines
the **exclusive** lower bound of a sensitive group.
If ``facet_name`` is a list, then ``facet_values_or_threshold`` can be None
if all facets are of binary or categorical type.
Otherwise, ``facet_values_or_threshold`` should be a list, and each element
is the value or threshold of the corresponding facet.
group_name (str): Optional column name or index to indicate a group column to be used
for the bias metric
`Conditional Demographic Disparity in Labels `(CDDL) <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-cddl.html>`_
or
`Conditional Demographic Disparity in Predicted Labels (CDDPL) <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-cddpl.html>`_.
Raises:
ValueError: If the number of ``facet_names`` doesn't equal number of ``facet values``
""" # noqa E501 # pylint: disable=c0301
if isinstance(facet_name, list):
assert len(facet_name) > 0, "Please provide at least one facet"
if facet_values_or_threshold is None:
facet_list = [
{"name_or_index": single_facet_name} for single_facet_name in facet_name
]
elif len(facet_values_or_threshold) == len(facet_name):
facet_list = []
for i, single_facet_name in enumerate(facet_name):
facet = {"name_or_index": single_facet_name}
if facet_values_or_threshold is not None:
_set(facet_values_or_threshold[i], "value_or_threshold", facet)
facet_list.append(facet)
else:
raise ValueError(
"The number of facet names doesn't match the number of facet values"
)
else:
facet = {"name_or_index": facet_name}
_set(facet_values_or_threshold, "value_or_threshold", facet)
facet_list = [facet]
self.analysis_config = {
"label_values_or_threshold": label_values_or_threshold,
"facet": facet_list,
}
_set(group_name, "group_variable", self.analysis_config)
def get_config(self):
"""Returns a dictionary of bias detection configurations, part of the analysis config"""
return copy.deepcopy(self.analysis_config)
class ModelConfig:
"""Config object related to a model and its endpoint to be created."""
def __init__(
self,
model_name: Optional[str] = None,
instance_count: Optional[int] = None,
instance_type: Optional[str] = None,
accept_type: Optional[str] = None,
content_type: Optional[str] = None,
content_template: Optional[str] = None,
custom_attributes: Optional[str] = None,
accelerator_type: Optional[str] = None,
endpoint_name_prefix: Optional[str] = None,
target_model: Optional[str] = None,
endpoint_name: Optional[str] = None,
):
r"""Initializes a configuration of a model and the endpoint to be created for it.
Args:
model_name (str): Model name (as created by
`CreateModel <https://docs.aws.amazon.com/sagemaker/latest/APIReference/API_CreateModel.html>`_.
Cannot be set when ``endpoint_name`` is set.
Must be set with ``instance_count``, ``instance_type``
instance_count (int): The number of instances of a new endpoint for model inference.
Cannot be set when ``endpoint_name`` is set.
Must be set with ``model_name``, ``instance_type``
instance_type (str): The type of
`EC2 instance <https://aws.amazon.com/ec2/instance-types/>`_
to use for model inference; for example, ``"ml.c5.xlarge"``.
Cannot be set when ``endpoint_name`` is set.
Must be set with ``instance_count``, ``model_name``
accept_type (str): The model output format to be used for getting inferences with the
shadow endpoint. Valid values are ``"text/csv"`` for CSV and
``"application/jsonlines"``. Default is the same as ``content_type``.
content_type (str): The model input format to be used for getting inferences with the
shadow endpoint. Valid values are ``"text/csv"`` for CSV and
``"application/jsonlines"``. Default is the same as ``dataset_format``.
content_template (str): A template string to be used to construct the model input from
dataset instances. It is only used when ``model_content_type`` is
``"application/jsonlines"``. The template should have one and only one placeholder,
``"features"``, which will be replaced by a features list to form the model
inference input.
custom_attributes (str): Provides additional information about a request for an
inference submitted to a model hosted at an Amazon SageMaker endpoint. The
information is an opaque value that is forwarded verbatim. You could use this
value, for example, to provide an ID that you can use to track a request or to
provide other metadata that a service endpoint was programmed to process. The value
must consist of no more than 1024 visible US-ASCII characters as specified in
Section 3.3.6.
`Field Value Components <https://tools.ietf.org/html/rfc7230#section-3.2.6>`_
of the Hypertext Transfer Protocol (HTTP/1.1).
accelerator_type (str): SageMaker
`Elastic Inference <https://docs.aws.amazon.com/sagemaker/latest/dg/ei.html>`_
accelerator type to deploy to the model endpoint instance
for making inferences to the model.
endpoint_name_prefix (str): The endpoint name prefix of a new endpoint. Must follow
pattern ``^[a-zA-Z0-9](-\*[a-zA-Z0-9]``.
target_model (str): Sets the target model name when using a multi-model endpoint. For
more information about multi-model endpoints, see
https://docs.aws.amazon.com/sagemaker/latest/dg/multi-model-endpoints.html
endpoint_name (str): Sets the endpoint_name when re-uses an existing endpoint.
Cannot be set when ``model_name``, ``instance_count``,
and ``instance_type`` set
Raises:
ValueError: when the
- ``endpoint_name_prefix`` is invalid,
- ``accept_type`` is invalid,
- ``content_type`` is invalid,
- ``content_template`` has no placeholder "features"
- both [``endpoint_name``]
AND [``model_name``, ``instance_count``, ``instance_type``] are set
- both [``endpoint_name``] AND [``endpoint_name_prefix``] are set
"""
# validation
_model_endpoint_config_rule = (
all([model_name, instance_count, instance_type]),
all([endpoint_name]),
)
assert any(_model_endpoint_config_rule) and not all(_model_endpoint_config_rule)
if endpoint_name:
assert not endpoint_name_prefix
# main init logic
self.predictor_config = (
{
"model_name": model_name,
"instance_type": instance_type,
"initial_instance_count": instance_count,
}
if not endpoint_name
else {"endpoint_name": endpoint_name}
)
if endpoint_name_prefix:
if re.search("^[a-zA-Z0-9](-*[a-zA-Z0-9])", endpoint_name_prefix) is None:
raise ValueError(
"Invalid endpoint_name_prefix."
" Please follow pattern ^[a-zA-Z0-9](-*[a-zA-Z0-9])."
)
self.predictor_config["endpoint_name_prefix"] = endpoint_name_prefix
if accept_type is not None:
if accept_type not in ["text/csv", "application/jsonlines"]:
raise ValueError(
f"Invalid accept_type {accept_type}."
f" Please choose text/csv or application/jsonlines."
)
self.predictor_config["accept_type"] = accept_type
if content_type is not None:
if content_type not in [
"text/csv",
"application/jsonlines",
"image/jpeg",
"image/jpg",
"image/png",
"application/x-npy",
]:
raise ValueError(
f"Invalid content_type {content_type}."
f" Please choose text/csv or application/jsonlines."
)
self.predictor_config["content_type"] = content_type
if content_template is not None:
if "$features" not in content_template:
raise ValueError(
f"Invalid content_template {content_template}."
f" Please include a placeholder $features."
)
self.predictor_config["content_template"] = content_template
_set(custom_attributes, "custom_attributes", self.predictor_config)
_set(accelerator_type, "accelerator_type", self.predictor_config)
_set(target_model, "target_model", self.predictor_config)
def get_predictor_config(self):
"""Returns part of the predictor dictionary of the analysis config."""
return copy.deepcopy(self.predictor_config)
class ModelPredictedLabelConfig:
"""Config object to extract a predicted label from the model output."""
def __init__(
self,
label: Optional[Union[str, int]] = None,
probability: Optional[Union[str, int]] = None,
probability_threshold: Optional[float] = None,
label_headers: Optional[List[str]] = None,
):
"""Initializes a model output config to extract the predicted label or predicted score(s).
The following examples show different parameter configurations depending on the endpoint:
* **Regression task:**
The model returns the score, e.g. ``1.2``. We don't need to specify
anything. For json output, e.g. ``{'score': 1.2}``, we can set ``label='score'``.
* **Binary classification:**
* The model returns a single probability score. We want to classify as ``"yes"``
predictions with a probability score over ``0.2``.
We can set ``probability_threshold=0.2`` and ``label_headers="yes"``.
* The model returns ``{"probability": 0.3}``, for which we would like to apply a
threshold of ``0.5`` to obtain a predicted label in ``{0, 1}``.
In this case we can set ``label="probability"``.
* The model returns a tuple of the predicted label and the probability.
In this case we can set ``label = 0``.
* **Multiclass classification:**
* The model returns ``{'labels': ['cat', 'dog', 'fish'],
'probabilities': [0.35, 0.25, 0.4]}``. In this case we would set
``probability='probabilities'``, ``label='labels'``,
and infer the predicted label to be ``'fish'``.
* The model returns ``{'predicted_label': 'fish', 'probabilities': [0.35, 0.25, 0.4]}``.
In this case we would set the ``label='predicted_label'``.
* The model returns ``[0.35, 0.25, 0.4]``. In this case, we can set
``label_headers=['cat','dog','fish']`` and infer the predicted label to be ``'fish'``.
Args:
label (str or int): Index or JSONPath location in the model output for the prediction.
In case, this is a predicted label of the same type as the label in the dataset,
no further arguments need to be specified.
probability (str or int): Index or JSONPath location in the model output
for the predicted score(s).
probability_threshold (float): An optional value for binary prediction tasks in which
the model returns a probability, to indicate the threshold to convert the
prediction to a boolean value. Default is ``0.5``.
label_headers (list[str]): List of headers, each for a predicted score in model output.
For bias analysis, it is used to extract the label value with the highest score as
predicted label. For explainability jobs, it is used to beautify the analysis report
by replacing placeholders like ``'label0'``.
Raises:
TypeError: when the ``probability_threshold`` cannot be cast to a float
"""
self.label = label
self.probability = probability
self.probability_threshold = probability_threshold
self.label_headers = label_headers
if probability_threshold is not None:
try:
float(probability_threshold)
except ValueError:
raise TypeError(
f"Invalid probability_threshold {probability_threshold}. "
f"Please choose one that can be cast to float."
)
self.predictor_config = {}
_set(label, "label", self.predictor_config)
_set(probability, "probability", self.predictor_config)
_set(label_headers, "label_headers", self.predictor_config)
def get_predictor_config(self):
"""Returns ``probability_threshold`` and predictor config dictionary."""
return self.probability_threshold, copy.deepcopy(self.predictor_config)
class ExplainabilityConfig(ABC):
"""Abstract config class to configure an explainability method."""
@abstractmethod
def get_explainability_config(self):
"""Returns config."""
return None
class PDPConfig(ExplainabilityConfig):
"""Config class for Partial Dependence Plots (PDP).
`PDPs <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-partial-dependence-plots.html>`_
show the marginal effect (the dependence) a subset of features has on the predicted
outcome of an ML model.
When PDP is requested (by passing in a :class:`~sagemaker.clarify.PDPConfig` to the
``explainability_config`` parameter of :class:`~sagemaker.clarify.SageMakerClarifyProcessor`),
the Partial Dependence Plots are included in the output
`report <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-feature-attribute-baselines-reports.html>`__
and the corresponding values are included in the analysis output.
""" # noqa E501
def __init__(
self, features: Optional[List] = None, grid_resolution: int = 15, top_k_features: int = 10
):
"""Initializes PDP config.
Args:
features (None or list): List of feature names or indices for which partial dependence
plots are computed and plotted. When :class:`~sagemaker.clarify.ShapConfig`
is provided, this parameter is optional, as Clarify will compute the
partial dependence plots for top features based on
`SHAP <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-shapley-values.html>`__
attributions. When :class:`~sagemaker.clarify.ShapConfig` is not provided,
``features`` must be provided.
grid_resolution (int): When using numerical features, this integer represents the
number of buckets that the range of values must be divided into. This decides the
granularity of the grid in which the PDP are plotted.
top_k_features (int): Sets the number of top SHAP attributes used to compute
partial dependence plots.
""" # noqa E501
self.pdp_config = {
"grid_resolution": grid_resolution,
"top_k_features": top_k_features,
}
if features is not None:
self.pdp_config["features"] = features
def get_explainability_config(self):
"""Returns PDP config dictionary."""
return copy.deepcopy({"pdp": self.pdp_config})
class TextConfig:
"""Config object to handle text features for text explainability
`SHAP analysis <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-model-explainability.html>`__
breaks down longer text into chunks (e.g. tokens, sentences, or paragraphs)
and replaces them with the strings specified in the baseline for that feature.
The `shap value <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-shapley-values.html>`_
of a chunk then captures how much replacing it affects the prediction.
""" # noqa E501 # pylint: disable=c0301
_SUPPORTED_GRANULARITIES = ["token", "sentence", "paragraph"]
_SUPPORTED_LANGUAGES = [
"chinese",
"zh",
"danish",
"da",
"dutch",
"nl",
"english",
"en",
"french",
"fr",
"german",
"de",
"greek",
"el",
"italian",
"it",
"japanese",
"ja",
"lithuanian",
"lt",
"multi-language",
"xx",
"norwegian bokmål",
"nb",
"polish",
"pl",
"portuguese",
"pt",
"romanian",
"ro",
"russian",
"ru",
"spanish",
"es",
"afrikaans",
"af",
"albanian",
"sq",
"arabic",
"ar",
"armenian",
"hy",
"basque",
"eu",
"bengali",
"bn",
"bulgarian",
"bg",
"catalan",
"ca",
"croatian",
"hr",
"czech",
"cs",
"estonian",
"et",
"finnish",
"fi",
"gujarati",
"gu",
"hebrew",
"he",
"hindi",
"hi",
"hungarian",
"hu",
"icelandic",
"is",
"indonesian",
"id",
"irish",
"ga",
"kannada",
"kn",
"kyrgyz",
"ky",
"latvian",
"lv",
"ligurian",
"lij",
"luxembourgish",
"lb",
"macedonian",
"mk",
"malayalam",
"ml",
"marathi",
"mr",
"nepali",
"ne",
"persian",
"fa",
"sanskrit",
"sa",
"serbian",
"sr",
"setswana",
"tn",
"sinhala",
"si",
"slovak",
"sk",
"slovenian",
"sl",
"swedish",
"sv",
"tagalog",
"tl",
"tamil",
"ta",
"tatar",
"tt",
"telugu",
"te",
"thai",
"th",
"turkish",
"tr",
"ukrainian",
"uk",
"urdu",
"ur",
"vietnamese",
"vi",
"yoruba",
"yo",
]
def __init__(
self,
granularity: str,
language: str,
):
"""Initializes a text configuration.
Args:
granularity (str): Determines the granularity in which text features are broken down
to. Accepted values are ``"token"``, ``"sentence"``, or ``"paragraph"``.
Computes `shap values <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-shapley-values.html>`_
for these units.
language (str): Specifies the language of the text features. Accepted values are
one of the following:
``"chinese"``, ``"danish"``, ``"dutch"``, ``"english"``, ``"french"``, ``"german"``,
``"greek"``, ``"italian"``, ``"japanese"``, ``"lithuanian"``, ``"multi-language"``,
``"norwegian bokmål"``, ``"polish"``, ``"portuguese"``, ``"romanian"``,
``"russian"``, ``"spanish"``, ``"afrikaans"``, ``"albanian"``, ``"arabic"``,
``"armenian"``, ``"basque"``, ``"bengali"``, ``"bulgarian"``, ``"catalan"``,
``"croatian"``, ``"czech"``, ``"estonian"``, ``"finnish"``, ``"gujarati"``,
``"hebrew"``, ``"hindi"``, ``"hungarian"``, ``"icelandic"``, ``"indonesian"``,
``"irish"``, ``"kannada"``, ``"kyrgyz"``, ``"latvian"``, ``"ligurian"``,
``"luxembourgish"``, ``"macedonian"``, ``"malayalam"``, ``"marathi"``, ``"nepali"``,
``"persian"``, ``"sanskrit"``, ``"serbian"``, ``"setswana"``, ``"sinhala"``,
``"slovak"``, ``"slovenian"``, ``"swedish"``, ``"tagalog"``, ``"tamil"``,
``"tatar"``, ``"telugu"``, ``"thai"``, ``"turkish"``, ``"ukrainian"``, ``"urdu"``,
``"vietnamese"``, ``"yoruba"``. Use "multi-language" for a mix of multiple
languages. The corresponding two-letter ISO codes are also accepted.
Raises:
ValueError: when ``granularity`` is not in list of supported values
or ``language`` is not in list of supported values
""" # noqa E501 # pylint: disable=c0301
if granularity not in TextConfig._SUPPORTED_GRANULARITIES:
raise ValueError(
f"Invalid granularity {granularity}. Please choose among "
f"{TextConfig._SUPPORTED_GRANULARITIES}"
)
if language not in TextConfig._SUPPORTED_LANGUAGES:
raise ValueError(
f"Invalid language {language}. Please choose among "
f"{TextConfig._SUPPORTED_LANGUAGES}"
)
self.text_config = {
"granularity": granularity,
"language": language,
}
def get_text_config(self):
"""Returns a text config dictionary, part of the analysis config dictionary."""
return copy.deepcopy(self.text_config)
class ImageConfig:
"""Config object for handling images"""
def __init__(
self,
model_type: str,
num_segments: Optional[int] = None,
feature_extraction_method: Optional[str] = None,
segment_compactness: Optional[float] = None,
max_objects: Optional[int] = None,
iou_threshold: Optional[float] = None,
context: Optional[float] = None,
):
"""Initializes a config object for Computer Vision (CV) Image explainability.
`SHAP for CV explainability <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-model-explainability-computer-vision.html>`__.
generating heat maps that visualize feature attributions for input images.
These heat maps highlight the image's features according
to how much they contribute to the CV model prediction.
``"IMAGE_CLASSIFICATION"`` and ``"OBJECT_DETECTION"`` are the two supported CV use cases.
Args:
model_type (str): Specifies the type of CV model and use case. Accepted options:
``"IMAGE_CLASSIFICATION"`` or ``"OBJECT_DETECTION"``.
num_segments (None or int): Approximate number of segments to generate when running
SKLearn's `SLIC method <https://scikit-image.org/docs/dev/api/skimage.segmentation.html?highlight=slic#skimage.segmentation.slic>`_
for image segmentation to generate features/superpixels.
The default is None. When set to None, runs SLIC with 20 segments.
feature_extraction_method (None or str): method used for extracting features from the
image (ex: "segmentation"). Default is ``"segmentation"``.
segment_compactness (None or float): Balances color proximity and space proximity.
Higher values give more weight to space proximity, making superpixel
shapes more square/cubic. We recommend exploring possible values on a log
scale, e.g., 0.01, 0.1, 1, 10, 100, before refining around a chosen value.
The default is None. When set to None, runs with the default value of ``5``.
max_objects (None or int): Maximum number of objects displayed when running SHAP
with an ``"OBJECT_DETECTION"`` model. The Object detection algorithm may detect
more than the ``max_objects`` number of objects in a single image.
In that case, the algorithm displays the top ``max_objects`` number of objects
according to confidence score. Default value is None. In the ``"OBJECT_DETECTION"``
case, passing in None leads to a default value of ``3``.
iou_threshold (None or float): Minimum intersection over union for the object
bounding box to consider its confidence score for computing SHAP values,
in the range ``[0.0, 1.0]``. Used only for the ``"OBJECT_DETECTION"`` case,
where passing in None sets the default value of ``0.5``.
context (None or float): The portion of the image outside the bounding box used
in SHAP analysis, in the range ``[0.0, 1.0]``. If set to ``1.0``, the whole image
is considered; if set to ``0.0`` only the image inside bounding box is considered.
Only used for the ``"OBJECT_DETECTION"`` case,
when passing in None sets the default value of ``1.0``.
""" # noqa E501 # pylint: disable=c0301
self.image_config = {}
if model_type not in ["OBJECT_DETECTION", "IMAGE_CLASSIFICATION"]:
raise ValueError(
"Clarify SHAP only supports object detection and image classification methods. "
"Please set model_type to OBJECT_DETECTION or IMAGE_CLASSIFICATION."
)
self.image_config["model_type"] = model_type
_set(num_segments, "num_segments", self.image_config)
_set(feature_extraction_method, "feature_extraction_method", self.image_config)
_set(segment_compactness, "segment_compactness", self.image_config)
_set(max_objects, "max_objects", self.image_config)
_set(iou_threshold, "iou_threshold", self.image_config)
_set(context, "context", self.image_config)
def get_image_config(self):
"""Returns the image config part of an analysis config dictionary."""
return copy.deepcopy(self.image_config)
class SHAPConfig(ExplainabilityConfig):
"""Config class for `SHAP <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-model-explainability.html>`__.
The SHAP algorithm calculates feature attributions by computing
the contribution of each feature to the prediction outcome, using the concept of
`Shapley values <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-shapley-values.html>`_.
These attributions can be provided for specific predictions (locally)
and at a global level for the model as a whole.
""" # noqa E501 # pylint: disable=c0301
def __init__(
self,
baseline: Optional[Union[str, List]] = None,
num_samples: Optional[int] = None,
agg_method: Optional[str] = None,
use_logit: bool = False,
save_local_shap_values: bool = True,
seed: Optional[int] = None,
num_clusters: Optional[int] = None,
text_config: Optional[TextConfig] = None,
image_config: Optional[ImageConfig] = None,
):
"""Initializes config for SHAP analysis.
Args:
baseline (None or str or list): `Baseline dataset <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-feature-attribute-shap-baselines.html>`_
for the Kernel SHAP algorithm, accepted in the form of:
S3 object URI, a list of rows (with at least one element),
or None (for no input baseline). The baseline dataset must have the same format
as the input dataset specified in :class:`~sagemaker.clarify.DataConfig`.
Each row must have only the feature columns/values and omit the label column/values.
If None, a baseline will be calculated automatically on the input dataset
using K-means (for numerical data) or K-prototypes (if there is categorical data).
num_samples (None or int): Number of samples to be used in the Kernel SHAP algorithm.
This number determines the size of the generated synthetic dataset to compute the
SHAP values. If not provided then Clarify job will choose a proper value according
to the count of features.
agg_method (None or str): Aggregation method for global SHAP values. Valid values are
``"mean_abs"`` (mean of absolute SHAP values for all instances),
``"median"`` (median of SHAP values for all instances) and
``"mean_sq"`` (mean of squared SHAP values for all instances).
If None is provided, then Clarify job uses the method ``"mean_abs"``.
use_logit (bool): Indicates whether to apply the logit function to model predictions.
Default is False. If ``use_logit`` is true then the SHAP values will
have log-odds units.
save_local_shap_values (bool): Indicates whether to save the local SHAP values
in the output location. Default is True.
seed (int): Seed value to get deterministic SHAP values. Default is None.
num_clusters (None or int): If a ``baseline`` is not provided, Clarify automatically
computes a baseline dataset via a clustering algorithm (K-means/K-prototypes), which
takes ``num_clusters`` as a parameter. ``num_clusters`` will be the resulting size
of the baseline dataset. If not provided, Clarify job uses a default value.
text_config (:class:`~sagemaker.clarify.TextConfig`): Config object for handling
text features. Default is None.
image_config (:class:`~sagemaker.clarify.ImageConfig`): Config for handling image
features. Default is None.
""" # noqa E501 # pylint: disable=c0301
if agg_method is not None and agg_method not in [
"mean_abs",
"median",
"mean_sq",
]:
raise ValueError(
f"Invalid agg_method {agg_method}." f" Please choose mean_abs, median, or mean_sq."
)
if num_clusters is not None and baseline is not None:
raise ValueError(
"Baseline and num_clusters cannot be provided together. "
"Please specify one of the two."
)
self.shap_config = {
"use_logit": use_logit,
"save_local_shap_values": save_local_shap_values,
}
_set(baseline, "baseline", self.shap_config)
_set(num_samples, "num_samples", self.shap_config)
_set(agg_method, "agg_method", self.shap_config)
_set(seed, "seed", self.shap_config)
_set(num_clusters, "num_clusters", self.shap_config)
if text_config:
_set(text_config.get_text_config(), "text_config", self.shap_config)
if not save_local_shap_values:
logger.warning(
"Global aggregation is not yet supported for text features. "
"Consider setting save_local_shap_values=True to inspect local text "
"explanations."
)
if image_config:
_set(image_config.get_image_config(), "image_config", self.shap_config)
def get_explainability_config(self):
"""Returns a shap config dictionary."""
return copy.deepcopy({"shap": self.shap_config})
class SageMakerClarifyProcessor(Processor):
"""Handles SageMaker Processing tasks to compute bias metrics and model explanations."""
_CLARIFY_DATA_INPUT = "/opt/ml/processing/input/data"
_CLARIFY_CONFIG_INPUT = "/opt/ml/processing/input/config"
_CLARIFY_OUTPUT = "/opt/ml/processing/output"
def __init__(
self,
role: str,
instance_count: int,
instance_type: str,
volume_size_in_gb: int = 30,
volume_kms_key: Optional[str] = None,
output_kms_key: Optional[str] = None,
max_runtime_in_seconds: Optional[int] = None,
sagemaker_session: Optional[Session] = None,
env: Optional[Dict[str, str]] = None,
tags: Optional[List[Dict[str, str]]] = None,
network_config: Optional[NetworkConfig] = None,
job_name_prefix: Optional[str] = None,
version: Optional[str] = None,
skip_early_validation: bool = False,
):
"""Initializes a SageMakerClarifyProcessor to compute bias metrics and model explanations.
Instance of :class:`~sagemaker.processing.Processor`.
Args:
role (str): An AWS IAM role name or ARN. Amazon SageMaker Processing
uses this role to access AWS resources, such as
data stored in Amazon S3.
instance_count (int): The number of instances to run
a processing job with.
instance_type (str): The type of
`EC2 instance <https://aws.amazon.com/ec2/instance-types/>`_
to use for model inference; for example, ``"ml.c5.xlarge"``.
volume_size_in_gb (int): Size in GB of the
`EBS volume <https://docs.aws.amazon.com/sagemaker/latest/dg/host-instance-storage.html>`_.
to use for storing data during processing (default: 30 GB).
volume_kms_key (str): A
`KMS key <https://docs.aws.amazon.com/sagemaker/latest/dg/key-management.html>`_
for the processing volume (default: None).
output_kms_key (str): The KMS key ID for processing job outputs (default: None).
max_runtime_in_seconds (int): Timeout in seconds (default: None).
After this amount of time, Amazon SageMaker terminates the job,
regardless of its current status. If ``max_runtime_in_seconds`` is not
specified, the default value is ``86400`` seconds (24 hours).
sagemaker_session (:class:`~sagemaker.session.Session`):
:class:`~sagemaker.session.Session` object which manages interactions
with Amazon SageMaker and any other AWS services needed. If not specified,
the Processor creates a :class:`~sagemaker.session.Session`
using the default AWS configuration chain.
env (dict[str, str]): Environment variables to be passed to
the processing jobs (default: None).
tags (list[dict]): List of tags to be passed to the processing job
(default: None). For more, see
https://docs.aws.amazon.com/sagemaker/latest/dg/API_Tag.html.
network_config (:class:`~sagemaker.network.NetworkConfig`):
A :class:`~sagemaker.network.NetworkConfig`
object that configures network isolation, encryption of
inter-container traffic, security group IDs, and subnets.
job_name_prefix (str): Processing job name prefix.
version (str): Clarify version to use.
skip_early_validation (bool): To skip schema validation of the generated analysis_schema.json.
""" # noqa E501 # pylint: disable=c0301
container_uri = image_uris.retrieve("clarify", sagemaker_session.boto_region_name, version)
self._last_analysis_config = None
self.job_name_prefix = job_name_prefix
self.skip_early_validation = skip_early_validation
super(SageMakerClarifyProcessor, self).__init__(
role,
container_uri,
instance_count,
instance_type,
None, # We manage the entrypoint.
volume_size_in_gb,
volume_kms_key,
output_kms_key,
max_runtime_in_seconds,
None, # We set method-specific job names below.
sagemaker_session,
env,
tags,
network_config,
)
def run(self, **_):
"""Overriding the base class method but deferring to specific run_* methods."""
raise NotImplementedError(
"Please choose a method of run_pre_training_bias, run_post_training_bias or "
"run_explainability."
)
def _run(
self,
data_config: DataConfig,
analysis_config: Dict[str, Any],
wait: bool,
logs: bool,
job_name: str,
kms_key: str,
experiment_config: Dict[str, str],
):
"""Runs a :class:`~sagemaker.processing.ProcessingJob` with the SageMaker Clarify container
and analysis config.
Args:
data_config (:class:`~sagemaker.clarify.DataConfig`): Config of the input/output data.
analysis_config (dict): Config following the analysis_config.json format.
wait (bool): Whether the call should wait until the job completes (default: True).
logs (bool): Whether to show the logs produced by the job.
Only meaningful when ``wait`` is True (default: True).
job_name (str): Processing job name.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
experiment_config (dict[str, str]): Experiment management configuration.
Optionally, the dict can contain three keys:
``'ExperimentName'``, ``'TrialName'``, and ``'TrialComponentDisplayName'``.
The behavior of setting these keys is as follows:
* If ``'ExperimentName'`` is supplied but ``'TrialName'`` is not, a Trial will be
automatically created and the job's Trial Component associated with the Trial.
* If ``'TrialName'`` is supplied and the Trial already exists,
the job's Trial Component will be associated with the Trial.
* If both ``'ExperimentName'`` and ``'TrialName'`` are not supplied,
the Trial Component will be unassociated.
* ``'TrialComponentDisplayName'`` is used for display in Amazon SageMaker Studio.
"""
# for debugging: to access locally, i.e. without a need to look for it in an S3 bucket
self._last_analysis_config = analysis_config
logger.info("Analysis Config: %s", analysis_config)
if not self.skip_early_validation:
ANALYSIS_CONFIG_SCHEMA_V1_0.validate(analysis_config)
with tempfile.TemporaryDirectory() as tmpdirname:
analysis_config_file = os.path.join(tmpdirname, "analysis_config.json")
with open(analysis_config_file, "w") as f:
json.dump(analysis_config, f)
s3_analysis_config_file = _upload_analysis_config(
analysis_config_file,
data_config.s3_analysis_config_output_path or data_config.s3_output_path,
self.sagemaker_session,
kms_key,
)
config_input = ProcessingInput(
input_name="analysis_config",
source=s3_analysis_config_file,
destination=self._CLARIFY_CONFIG_INPUT,
s3_data_type="S3Prefix",
s3_input_mode="File",
s3_compression_type="None",
)
data_input = ProcessingInput(
input_name="dataset",
source=data_config.s3_data_input_path,
destination=self._CLARIFY_DATA_INPUT,
s3_data_type="S3Prefix",
s3_input_mode="File",
s3_data_distribution_type=data_config.s3_data_distribution_type,
s3_compression_type=data_config.s3_compression_type,
)
result_output = ProcessingOutput(
source=self._CLARIFY_OUTPUT,
destination=data_config.s3_output_path,
output_name="analysis_result",
s3_upload_mode="EndOfJob",
)
return super().run(
inputs=[data_input, config_input],
outputs=[result_output],
wait=wait,
logs=logs,
job_name=job_name,
kms_key=kms_key,
experiment_config=experiment_config,
)
def run_pre_training_bias(
self,
data_config: DataConfig,
data_bias_config: BiasConfig,
methods: Union[str, List[str]] = "all",
wait: bool = True,
logs: bool = True,
job_name: Optional[str] = None,
kms_key: Optional[str] = None,
experiment_config: Optional[Dict[str, str]] = None,
):
"""Runs a :class:`~sagemaker.processing.ProcessingJob` to compute pre-training bias methods
Computes the requested ``methods`` on the input data. The ``methods`` compare
metrics (e.g. fraction of examples) for the sensitive group(s) vs. the other examples.
Args:
data_config (:class:`~sagemaker.clarify.DataConfig`): Config of the input/output data.
data_bias_config (:class:`~sagemaker.clarify.BiasConfig`): Config of sensitive groups.
methods (str or list[str]): Selects a subset of potential metrics:
["`CI <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-bias-metric-class-imbalance.html>`_",
"`DPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-true-label-imbalance.html>`_",
"`KL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-kl-divergence.html>`_",
"`JS <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-jensen-shannon-divergence.html>`_",
"`LP <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-lp-norm.html>`_",
"`TVD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-total-variation-distance.html>`_",
"`KS <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-kolmogorov-smirnov.html>`_",
"`CDDL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-cddl.html>`_"].
Defaults to str "all" to run all metrics if left unspecified.
wait (bool): Whether the call should wait until the job completes (default: True).
logs (bool): Whether to show the logs produced by the job.
Only meaningful when ``wait`` is True (default: True).
job_name (str): Processing job name. When ``job_name`` is not specified,
if ``job_name_prefix`` in :class:`~sagemaker.clarify.SageMakerClarifyProcessor` is
specified, the job name will be the ``job_name_prefix`` and current timestamp;
otherwise use ``"Clarify-Pretraining-Bias"`` as prefix.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
experiment_config (dict[str, str]): Experiment management configuration.
Optionally, the dict can contain three keys:
``'ExperimentName'``, ``'TrialName'``, and ``'TrialComponentDisplayName'``.
The behavior of setting these keys is as follows:
* If ``'ExperimentName'`` is supplied but ``'TrialName'`` is not, a Trial will be
automatically created and the job's Trial Component associated with the Trial.
* If ``'TrialName'`` is supplied and the Trial already exists,
the job's Trial Component will be associated with the Trial.
* If both ``'ExperimentName'`` and ``'TrialName'`` are not supplied,
the Trial Component will be unassociated.
* ``'TrialComponentDisplayName'`` is used for display in Amazon SageMaker Studio.
""" # noqa E501 # pylint: disable=c0301
analysis_config = _AnalysisConfigGenerator.bias_pre_training(
data_config, data_bias_config, methods
)
# when name is either not provided (is None) or an empty string ("")
job_name = job_name or utils.name_from_base(
self.job_name_prefix or "Clarify-Pretraining-Bias"
)
return self._run(
data_config,
analysis_config,
wait,
logs,
job_name,
kms_key,
experiment_config,
)
def run_post_training_bias(
self,
data_config: DataConfig,
data_bias_config: BiasConfig,
model_config: ModelConfig,
model_predicted_label_config: ModelPredictedLabelConfig,
methods: Union[str, List[str]] = "all",
wait: bool = True,
logs: bool = True,
job_name: Optional[str] = None,
kms_key: Optional[str] = None,
experiment_config: Optional[Dict[str, str]] = None,
):
"""Runs a :class:`~sagemaker.processing.ProcessingJob` to compute posttraining bias
Spins up a model endpoint and runs inference over the input dataset in
the ``s3_data_input_path`` (from the :class:`~sagemaker.clarify.DataConfig`) to obtain
predicted labels. Using model predictions, computes the requested posttraining bias
``methods`` that compare metrics (e.g. accuracy, precision, recall) for the
sensitive group(s) versus the other examples.
Args:
data_config (:class:`~sagemaker.clarify.DataConfig`): Config of the input/output data.
data_bias_config (:class:`~sagemaker.clarify.BiasConfig`): Config of sensitive groups.
model_config (:class:`~sagemaker.clarify.ModelConfig`): Config of the model and its
endpoint to be created.
model_predicted_label_config (:class:`~sagemaker.clarify.ModelPredictedLabelConfig`):
Config of how to extract the predicted label from the model output.
methods (str or list[str]): Selector of a subset of potential metrics:
["`DPPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dppl.html>`_"
, "`DI <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-di.html>`_",
"`DCA <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dca.html>`_",
"`DCR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dcr.html>`_",
"`RD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-rd.html>`_",
"`DAR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dar.html>`_",
"`DRR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-drr.html>`_",
"`AD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-ad.html>`_",
"`CDDPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-cddpl.html>`_
", "`TE <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-te.html>`_",
"`FT <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-ft.html>`_"].
Defaults to str "all" to run all metrics if left unspecified.
wait (bool): Whether the call should wait until the job completes (default: True).
logs (bool): Whether to show the logs produced by the job.
Only meaningful when ``wait`` is True (default: True).
job_name (str): Processing job name. When ``job_name`` is not specified,
if ``job_name_prefix`` in :class:`~sagemaker.clarify.SageMakerClarifyProcessor`
is specified, the job name will be the ``job_name_prefix`` and current timestamp;
otherwise use ``"Clarify-Posttraining-Bias"`` as prefix.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
experiment_config (dict[str, str]): Experiment management configuration.
Optionally, the dict can contain three keys:
``'ExperimentName'``, ``'TrialName'``, and ``'TrialComponentDisplayName'``.
The behavior of setting these keys is as follows:
* If ``'ExperimentName'`` is supplied but ``'TrialName'`` is not, a Trial will be
automatically created and the job's Trial Component associated with the Trial.
* If ``'TrialName'`` is supplied and the Trial already exists,
the job's Trial Component will be associated with the Trial.
* If both ``'ExperimentName'`` and ``'TrialName'`` are not supplied,
the Trial Component will be unassociated.
* ``'TrialComponentDisplayName'`` is used for display in Amazon SageMaker Studio.
""" # noqa E501 # pylint: disable=c0301
analysis_config = _AnalysisConfigGenerator.bias_post_training(
data_config,
data_bias_config,
model_predicted_label_config,
methods,
model_config,
)
# when name is either not provided (is None) or an empty string ("")
job_name = job_name or utils.name_from_base(
self.job_name_prefix or "Clarify-Posttraining-Bias"
)
return self._run(
data_config,
analysis_config,
wait,
logs,
job_name,
kms_key,
experiment_config,
)
def run_bias(
self,
data_config: DataConfig,
bias_config: BiasConfig,
model_config: ModelConfig,
model_predicted_label_config: Optional[ModelPredictedLabelConfig] = None,
pre_training_methods: Union[str, List[str]] = "all",
post_training_methods: Union[str, List[str]] = "all",
wait: bool = True,
logs: bool = True,
job_name: Optional[str] = None,
kms_key: Optional[str] = None,
experiment_config: Optional[Dict[str, str]] = None,
):
"""Runs a :class:`~sagemaker.processing.ProcessingJob` to compute the requested bias methods
Computes metrics for both the pre-training and the post-training methods.
To calculate post-training methods, it spins up a model endpoint and runs inference over the
input examples in 's3_data_input_path' (from the :class:`~sagemaker.clarify.DataConfig`)
to obtain predicted labels.
Args:
data_config (:class:`~sagemaker.clarify.DataConfig`): Config of the input/output data.
bias_config (:class:`~sagemaker.clarify.BiasConfig`): Config of sensitive groups.
model_config (:class:`~sagemaker.clarify.ModelConfig`): Config of the model and its
endpoint to be created.
model_predicted_label_config (:class:`~sagemaker.clarify.ModelPredictedLabelConfig`):
Config of how to extract the predicted label from the model output.
pre_training_methods (str or list[str]): Selector of a subset of potential metrics:
["`CI <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-bias-metric-class-imbalance.html>`_",
"`DPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-true-label-imbalance.html>`_",
"`KL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-kl-divergence.html>`_",
"`JS <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-jensen-shannon-divergence.html>`_",
"`LP <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-lp-norm.html>`_",
"`TVD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-total-variation-distance.html>`_",
"`KS <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-kolmogorov-smirnov.html>`_",
"`CDDL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-cddl.html>`_"].
Defaults to str "all" to run all metrics if left unspecified.
post_training_methods (str or list[str]): Selector of a subset of potential metrics:
["`DPPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dppl.html>`_"
, "`DI <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-di.html>`_",
"`DCA <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dca.html>`_",
"`DCR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dcr.html>`_",
"`RD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-rd.html>`_",
"`DAR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dar.html>`_",
"`DRR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-drr.html>`_",
"`AD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-ad.html>`_",
"`CDDPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-cddpl.html>`_
", "`TE <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-te.html>`_",
"`FT <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-ft.html>`_"].
Defaults to str "all" to run all metrics if left unspecified.
wait (bool): Whether the call should wait until the job completes (default: True).
logs (bool): Whether to show the logs produced by the job.
Only meaningful when ``wait`` is True (default: True).
job_name (str): Processing job name. When ``job_name`` is not specified,
if ``job_name_prefix`` in :class:`~sagemaker.clarify.SageMakerClarifyProcessor` is
specified, the job name will be ``job_name_prefix`` and the current timestamp;
otherwise use ``"Clarify-Bias"`` as prefix.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
experiment_config (dict[str, str]): Experiment management configuration.
Optionally, the dict can contain three keys:
``'ExperimentName'``, ``'TrialName'``, and ``'TrialComponentDisplayName'``.
The behavior of setting these keys is as follows:
* If ``'ExperimentName'`` is supplied but ``'TrialName'`` is not, a Trial will be
automatically created and the job's Trial Component associated with the Trial.
* If ``'TrialName'`` is supplied and the Trial already exists,
the job's Trial Component will be associated with the Trial.
* If both ``'ExperimentName'`` and ``'TrialName'`` are not supplied,
the Trial Component will be unassociated.
* ``'TrialComponentDisplayName'`` is used for display in Amazon SageMaker Studio.
""" # noqa E501 # pylint: disable=c0301
analysis_config = _AnalysisConfigGenerator.bias(
data_config,
bias_config,
model_config,
model_predicted_label_config,
pre_training_methods,
post_training_methods,
)
# when name is either not provided (is None) or an empty string ("")
job_name = job_name or utils.name_from_base(self.job_name_prefix or "Clarify-Bias")
return self._run(
data_config,
analysis_config,
wait,
logs,
job_name,
kms_key,
experiment_config,
)
def run_explainability(
self,
data_config: DataConfig,
model_config: ModelConfig,
explainability_config: Union[ExplainabilityConfig, List],
model_scores: Optional[Union[int, str, ModelPredictedLabelConfig]] = None,
wait: bool = True,
logs: bool = True,
job_name: Optional[str] = None,
kms_key: Optional[str] = None,
experiment_config: Optional[Dict[str, str]] = None,
):
"""Runs a :class:`~sagemaker.processing.ProcessingJob` computing feature attributions.
Spins up a model endpoint.
Currently, only SHAP and Partial Dependence Plots (PDP) are supported
as explainability methods.
You can request both methods or one at a time with the ``explainability_config`` parameter.
When SHAP is requested in the ``explainability_config``,
the SHAP algorithm calculates the feature importance for each input example
in the ``s3_data_input_path`` of the :class:`~sagemaker.clarify.DataConfig`,
by creating ``num_samples`` copies of the example with a subset of features
replaced with values from the ``baseline``.
It then runs model inference to see how the model's prediction changes with the replaced
features. If the model output returns multiple scores importance is computed for each score.
Across examples, feature importance is aggregated using ``agg_method``.
When PDP is requested in the ``explainability_config``,
the PDP algorithm calculates the dependence of the target response
on the input features and marginalizes over the values of all other input features.
The Partial Dependence Plots are included in the output
`report <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-feature-attribute-baselines-reports.html>`__
and the corresponding values are included in the analysis output.
Args:
data_config (:class:`~sagemaker.clarify.DataConfig`): Config of the input/output data.
model_config (:class:`~sagemaker.clarify.ModelConfig`): Config of the model and its
endpoint to be created.
explainability_config (:class:`~sagemaker.clarify.ExplainabilityConfig` or list):
Config of the specific explainability method or a list of
:class:`~sagemaker.clarify.ExplainabilityConfig` objects.
Currently, SHAP and PDP are the two methods supported.
You can request multiple methods at once by passing in a list of
`~sagemaker.clarify.ExplainabilityConfig`.
model_scores (int or str or :class:`~sagemaker.clarify.ModelPredictedLabelConfig`):
Index or JSONPath to locate the predicted scores in the model output. This is not
required if the model output is a single score. Alternatively, it can be an instance
of :class:`~sagemaker.clarify.SageMakerClarifyProcessor`
to provide more parameters like ``label_headers``.
wait (bool): Whether the call should wait until the job completes (default: True).
logs (bool): Whether to show the logs produced by the job.
Only meaningful when ``wait`` is True (default: True).
job_name (str): Processing job name. When ``job_name`` is not specified,
if ``job_name_prefix`` in :class:`~sagemaker.clarify.SageMakerClarifyProcessor`
is specified, the job name will be composed of ``job_name_prefix`` and current
timestamp; otherwise use ``"Clarify-Explainability"`` as prefix.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
experiment_config (dict[str, str]): Experiment management configuration.
Optionally, the dict can contain three keys:
``'ExperimentName'``, ``'TrialName'``, and ``'TrialComponentDisplayName'``.
The behavior of setting these keys is as follows:
* If ``'ExperimentName'`` is supplied but ``'TrialName'`` is not, a Trial will be
automatically created and the job's Trial Component associated with the Trial.
* If ``'TrialName'`` is supplied and the Trial already exists,
the job's Trial Component will be associated with the Trial.
* If both ``'ExperimentName'`` and ``'TrialName'`` are not supplied,
the Trial Component will be unassociated.
* ``'TrialComponentDisplayName'`` is used for display in Amazon SageMaker Studio.
""" # noqa E501 # pylint: disable=c0301
analysis_config = _AnalysisConfigGenerator.explainability(
data_config, model_config, model_scores, explainability_config
)
# when name is either not provided (is None) or an empty string ("")
job_name = job_name or utils.name_from_base(
self.job_name_prefix or "Clarify-Explainability"
)
return self._run(
data_config,
analysis_config,
wait,
logs,
job_name,
kms_key,
experiment_config,
)
def run_bias_and_explainability(
self,
data_config: DataConfig,
model_config: ModelConfig,
explainability_config: Union[ExplainabilityConfig, List[ExplainabilityConfig]],
bias_config: BiasConfig,
pre_training_methods: Union[str, List[str]] = "all",
post_training_methods: Union[str, List[str]] = "all",
model_predicted_label_config: ModelPredictedLabelConfig = None,
wait=True,
logs=True,
job_name=None,
kms_key=None,
experiment_config=None,
):
"""Runs a :class:`~sagemaker.processing.ProcessingJob` computing feature attributions.
For bias:
Computes metrics for both the pre-training and the post-training methods.
To calculate post-training methods, it spins up a model endpoint and runs inference over the
input examples in 's3_data_input_path' (from the :class:`~sagemaker.clarify.DataConfig`)
to obtain predicted labels.
For Explainability:
Spins up a model endpoint.
Currently, only SHAP and Partial Dependence Plots (PDP) are supported
as explainability methods.
You can request both methods or one at a time with the ``explainability_config`` parameter.
When SHAP is requested in the ``explainability_config``,
the SHAP algorithm calculates the feature importance for each input example
in the ``s3_data_input_path`` of the :class:`~sagemaker.clarify.DataConfig`,
by creating ``num_samples`` copies of the example with a subset of features
replaced with values from the ``baseline``.
It then runs model inference to see how the model's prediction changes with the replaced
features. If the model output returns multiple scores importance is computed for each score.
Across examples, feature importance is aggregated using ``agg_method``.
When PDP is requested in the ``explainability_config``,
the PDP algorithm calculates the dependence of the target response
on the input features and marginalizes over the values of all other input features.
The Partial Dependence Plots are included in the output
`report <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-feature-attribute-baselines-reports.html>`__
and the corresponding values are included in the analysis output.
Args:
data_config (:class:`~sagemaker.clarify.DataConfig`): Config of the input/output data.
model_config (:class:`~sagemaker.clarify.ModelConfig`): Config of the model and its
endpoint to be created.
explainability_config (:class:`~sagemaker.clarify.ExplainabilityConfig` or list):
Config of the specific explainability method or a list of
:class:`~sagemaker.clarify.ExplainabilityConfig` objects.
Currently, SHAP and PDP are the two methods supported.
You can request multiple methods at once by passing in a list of
`~sagemaker.clarify.ExplainabilityConfig`.
bias_config (:class:`~sagemaker.clarify.BiasConfig`): Config of sensitive groups.
pre_training_methods (str or list[str]): Selector of a subset of potential metrics:
["`CI <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-bias-metric-class-imbalance.html>`_",
"`DPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-true-label-imbalance.html>`_",
"`KL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-kl-divergence.html>`_",
"`JS <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-jensen-shannon-divergence.html>`_",
"`LP <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-lp-norm.html>`_",
"`TVD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-total-variation-distance.html>`_",
"`KS <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-kolmogorov-smirnov.html>`_",
"`CDDL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-data-bias-metric-cddl.html>`_"].
Defaults to str "all" to run all metrics if left unspecified.
post_training_methods (str or list[str]): Selector of a subset of potential metrics:
["`DPPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dppl.html>`_"
, "`DI <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-di.html>`_",
"`DCA <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dca.html>`_",
"`DCR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dcr.html>`_",
"`RD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-rd.html>`_",
"`DAR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-dar.html>`_",
"`DRR <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-drr.html>`_",
"`AD <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-ad.html>`_",
"`CDDPL <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-cddpl.html>`_
", "`TE <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-te.html>`_",
"`FT <https://docs.aws.amazon.com/sagemaker/latest/dg/clarify-post-training-bias-metric-ft.html>`_"].
Defaults to str "all" to run all metrics if left unspecified.
model_predicted_label_config (
int or
str or
:class:`~sagemaker.clarify.ModelPredictedLabelConfig`
):
Index or JSONPath to locate the predicted scores in the model output. This is not
required if the model output is a single score. Alternatively, it can be an instance
of :class:`~sagemaker.clarify.SageMakerClarifyProcessor`
to provide more parameters like ``label_headers``.
wait (bool): Whether the call should wait until the job completes (default: True).
logs (bool): Whether to show the logs produced by the job.
Only meaningful when ``wait`` is True (default: True).
job_name (str): Processing job name. When ``job_name`` is not specified,
if ``job_name_prefix`` in :class:`~sagemaker.clarify.SageMakerClarifyProcessor`
is specified, the job name will be composed of ``job_name_prefix`` and current
timestamp; otherwise use ``"Clarify-Explainability"`` as prefix.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
experiment_config (dict[str, str]): Experiment management configuration.
Optionally, the dict can contain three keys:
``'ExperimentName'``, ``'TrialName'``, and ``'TrialComponentDisplayName'``.
The behavior of setting these keys is as follows:
* If ``'ExperimentName'`` is supplied but ``'TrialName'`` is not, a Trial will be
automatically created and the job's Trial Component associated with the Trial.
* If ``'TrialName'`` is supplied and the Trial already exists,
the job's Trial Component will be associated with the Trial.
* If both ``'ExperimentName'`` and ``'TrialName'`` are not supplied,
the Trial Component will be unassociated.
* ``'TrialComponentDisplayName'`` is used for display in Amazon SageMaker Studio.
""" # noqa E501 # pylint: disable=c0301
analysis_config = _AnalysisConfigGenerator.bias_and_explainability(
data_config,
model_config,
model_predicted_label_config,
explainability_config,
bias_config,
pre_training_methods,
post_training_methods,
)
# when name is either not provided (is None) or an empty string ("")
job_name = job_name or utils.name_from_base(
self.job_name_prefix or "Clarify-Bias-And-Explainability"
)
return self._run(
data_config,
analysis_config,
wait,
logs,
job_name,
kms_key,
experiment_config,
)
class _AnalysisConfigGenerator:
"""Creates analysis_config objects for different type of runs."""
@classmethod
def bias_and_explainability(
cls,
data_config: DataConfig,
model_config: ModelConfig,
model_predicted_label_config: ModelPredictedLabelConfig,
explainability_config: Union[ExplainabilityConfig, List[ExplainabilityConfig]],
bias_config: BiasConfig,
pre_training_methods: Union[str, List[str]] = "all",
post_training_methods: Union[str, List[str]] = "all",
):
"""Generates a config for Bias and Explainability"""
analysis_config = {**data_config.get_config(), **bias_config.get_config()}
analysis_config = cls._add_methods(
analysis_config,
pre_training_methods=pre_training_methods,
post_training_methods=post_training_methods,
explainability_config=explainability_config,
)
analysis_config = cls._add_predictor(
analysis_config, model_config, model_predicted_label_config
)
return analysis_config
@classmethod
def explainability(
cls,
data_config: DataConfig,
model_config: ModelConfig,
model_predicted_label_config: ModelPredictedLabelConfig,
explainability_config: Union[ExplainabilityConfig, List[ExplainabilityConfig]],
):
"""Generates a config for Explainability"""
analysis_config = data_config.analysis_config
analysis_config = cls._add_predictor(
analysis_config, model_config, model_predicted_label_config
)
analysis_config = cls._add_methods(
analysis_config, explainability_config=explainability_config
)
return analysis_config
@classmethod
def bias_pre_training(
cls,
data_config: DataConfig,
bias_config: BiasConfig,
methods: Union[str, List[str]],
):
"""Generates a config for Bias Pre Training"""
analysis_config = {**data_config.get_config(), **bias_config.get_config()}
analysis_config = cls._add_methods(analysis_config, pre_training_methods=methods)
return analysis_config
@classmethod
def bias_post_training(
cls,
data_config: DataConfig,
bias_config: BiasConfig,
model_predicted_label_config: ModelPredictedLabelConfig,
methods: Union[str, List[str]],
model_config: ModelConfig,
):
"""Generates a config for Bias Post Training"""
analysis_config = {**data_config.get_config(), **bias_config.get_config()}
analysis_config = cls._add_methods(analysis_config, post_training_methods=methods)
analysis_config = cls._add_predictor(
analysis_config, model_config, model_predicted_label_config
)
return analysis_config
@classmethod
def bias(
cls,
data_config: DataConfig,
bias_config: BiasConfig,
model_config: ModelConfig,
model_predicted_label_config: ModelPredictedLabelConfig,
pre_training_methods: Union[str, List[str]] = "all",
post_training_methods: Union[str, List[str]] = "all",
):
"""Generates a config for Bias"""
analysis_config = {**data_config.get_config(), **bias_config.get_config()}
analysis_config = cls._add_methods(
analysis_config,
pre_training_methods=pre_training_methods,
post_training_methods=post_training_methods,
)
analysis_config = cls._add_predictor(
analysis_config, model_config, model_predicted_label_config
)
return analysis_config
@classmethod
def _add_predictor(
cls,
analysis_config: Dict,
model_config: ModelConfig,
model_predicted_label_config: ModelPredictedLabelConfig,
):
"""Extends analysis config with predictor."""
analysis_config = {**analysis_config}
analysis_config["predictor"] = model_config.get_predictor_config()
if isinstance(model_predicted_label_config, ModelPredictedLabelConfig):
(
probability_threshold,
predictor_config,
) = model_predicted_label_config.get_predictor_config()
if predictor_config:
analysis_config["predictor"].update(predictor_config)
_set(probability_threshold, "probability_threshold", analysis_config)
else:
_set(model_predicted_label_config, "label", analysis_config["predictor"])
return analysis_config
@classmethod
def _add_methods(
cls,
analysis_config: Dict,
pre_training_methods: Union[str, List[str]] = None,
post_training_methods: Union[str, List[str]] = None,
explainability_config: Union[ExplainabilityConfig, List[ExplainabilityConfig]] = None,
report=True,
):
"""Extends analysis config with methods."""
# validate
params = [pre_training_methods, post_training_methods, explainability_config]
if not any(params):
raise AttributeError(
"analysis_config must have at least one working method: "
"One of the "
"`pre_training_methods`, `post_training_methods`, `explainability_config`."
)
# main logic
analysis_config = {**analysis_config}
if "methods" not in analysis_config:
analysis_config["methods"] = {}
if report:
analysis_config["methods"]["report"] = {
"name": "report",
"title": "Analysis Report",
}
if pre_training_methods:
analysis_config["methods"]["pre_training_bias"] = {"methods": pre_training_methods}
if post_training_methods:
analysis_config["methods"]["post_training_bias"] = {"methods": post_training_methods}
if explainability_config is not None:
explainability_methods = cls._merge_explainability_configs(explainability_config)
analysis_config["methods"] = {
**analysis_config["methods"],
**explainability_methods,
}
return analysis_config
@classmethod
def _merge_explainability_configs(
cls,
explainability_config: Union[ExplainabilityConfig, List[ExplainabilityConfig]],
):
"""Merges explainability configs, when more than one."""
if isinstance(explainability_config, list):
explainability_methods = {}
if len(explainability_config) == 0:
raise ValueError("Please provide at least one explainability config.")
for config in explainability_config:
explain_config = config.get_explainability_config()
explainability_methods.update(explain_config)
if not len(explainability_methods) == len(explainability_config):
raise ValueError("Duplicate explainability configs are provided")
if (
"shap" not in explainability_methods
and "features" not in explainability_methods["pdp"]
):
raise ValueError("PDP features must be provided when ShapConfig is not provided")
return explainability_methods
if (
isinstance(explainability_config, PDPConfig)
and "features" not in explainability_config.get_explainability_config()["pdp"]
):
raise ValueError("PDP features must be provided when ShapConfig is not provided")
return explainability_config.get_explainability_config()
def _upload_analysis_config(analysis_config_file, s3_output_path, sagemaker_session, kms_key):
"""Uploads the local ``analysis_config_file`` to the ``s3_output_path``.
Args:
analysis_config_file (str): File path to the local analysis config file.
s3_output_path (str): S3 prefix to store the analysis config file.
sagemaker_session (:class:`~sagemaker.session.Session`):
:class:`~sagemaker.session.Session` object which manages interactions with
Amazon SageMaker and any other AWS services needed. If not specified,
the processor creates a :class:`~sagemaker.session.Session`
using the default AWS configuration chain.
kms_key (str): The ARN of the KMS key that is used to encrypt the
user code file (default: None).
Returns:
The S3 URI of the uploaded file.
"""
return s3.S3Uploader.upload(
local_path=analysis_config_file,
desired_s3_uri=s3_output_path,
sagemaker_session=sagemaker_session,
kms_key=kms_key,
)
def _set(value, key, dictionary):
"""Sets dictionary[key] = value if value is not None."""
if value is not None:
dictionary[key] = value
|