from dataclasses import dataclass import os @dataclass class FlowConfig: # Flow model type model_type: str = 'hierarchical' # Flow Matching specific parameters batch_size: int = 32 ntoken: int = 512 d_model: int = 512 lr: float = 1e-5 steps: int = 5000 eta_min: float = 1e-7 devices: str = "1" test_only: bool = False # Perturbation related parameters data_name: str = "combosciplex" perturbation_function: str = 'crisper' noise_type: str = "Gaussian" poisson_alpha: float = 0.8 poisson_target_sum: int = -1 print_every: int = 5000 mode: str = 'predict_y' # predict_y, predict_p result_path: str = './result' perturbation_fusion_method: str = 'sum' # mlp, sum fusion_method: str = 'cross' # cross , concat, add infer_top_gene: int = 1000 n_top_genes: int = 5000 checkpoint_path: str = '' gamma: float = 0.0 split_method: str = 'additive' use_mmd_loss: bool = False fold: int = 0 use_negative_edge: bool = False topk: int = 15 def __post_init__(self): if self.data_name == 'norman_umi_go_filtered': self.n_top_genes = 5054 if self.data_name == 'norman': self.n_top_genes = 5000 path = self.make_path() def make_path(self): exp_name = '-'.join(['flow', f'fusion_{self.fusion_method}', f'{self.data_name}', self.model_type, self.mode, f'gamma_{self.gamma}', f'perturbation_function_{self.perturbation_function}', f'lr_{self.lr}', f'dim_model_{self.d_model}', f'infer_top_gene_{self.infer_top_gene}', f'split_method_{self.split_method}', f'use_mmd_loss_{self.use_mmd_loss}', f'fold_{self.fold}', f'use_negative_edge_{self.use_negative_edge}', f'topk_{self.topk}', ]) return os.path.join(self.result_path, exp_name)